Query psy7473
Match_columns 136
No_of_seqs 202 out of 1173
Neff 9.5
Searched_HMMs 46136
Date Fri Aug 16 19:14:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7473.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7473hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12361 hypothetical protein; 100.0 1E-30 2.2E-35 203.0 11.9 130 1-135 66-199 (547)
2 KOG1719|consensus 100.0 3E-30 6.6E-35 166.2 11.0 133 1-136 1-134 (183)
3 smart00195 DSPc Dual specifici 100.0 1.6E-29 3.5E-34 164.8 10.9 102 26-135 1-102 (138)
4 cd00127 DSPc Dual specificity 100.0 8.4E-28 1.8E-32 156.6 10.7 104 26-135 2-105 (139)
5 KOG1717|consensus 99.9 1.1E-26 2.5E-31 161.5 7.6 108 23-136 169-276 (343)
6 PF00782 DSPc: Dual specificit 99.9 1.6E-26 3.4E-31 149.7 7.8 97 33-135 1-97 (133)
7 KOG1718|consensus 99.9 2.2E-25 4.7E-30 145.7 9.7 104 25-136 16-119 (198)
8 KOG1716|consensus 99.9 6.4E-24 1.4E-28 153.3 10.1 107 25-136 74-180 (285)
9 PTZ00242 protein tyrosine phos 99.9 2.9E-23 6.3E-28 139.0 12.0 107 24-136 9-123 (166)
10 PTZ00393 protein tyrosine phos 99.9 1.9E-21 4.1E-26 135.0 12.2 104 26-135 84-194 (241)
11 PF05706 CDKN3: Cyclin-depende 99.9 1.1E-21 2.4E-26 129.3 9.5 104 31-135 41-157 (168)
12 PF03162 Y_phosphatase2: Tyros 99.8 2.8E-20 6.2E-25 124.2 7.9 104 26-133 7-113 (164)
13 TIGR01244 conserved hypothetic 99.8 2.2E-18 4.9E-23 111.9 11.3 102 27-134 3-108 (135)
14 KOG1720|consensus 99.8 8.8E-19 1.9E-23 118.5 9.5 83 46-135 89-171 (225)
15 PF04273 DUF442: Putative phos 99.8 6.4E-19 1.4E-23 110.2 8.1 101 26-132 2-106 (110)
16 COG2453 CDC14 Predicted protei 99.7 6.4E-18 1.4E-22 114.7 8.0 64 72-136 67-130 (180)
17 PLN02727 NAD kinase 99.7 3.7E-17 8E-22 130.3 10.4 102 31-135 261-365 (986)
18 PF13350 Y_phosphatase3: Tyros 99.6 8.4E-15 1.8E-19 98.1 8.3 104 28-134 15-147 (164)
19 COG3453 Uncharacterized protei 99.6 2.1E-14 4.5E-19 89.3 8.3 97 26-128 3-103 (130)
20 KOG1572|consensus 99.5 3.3E-13 7.1E-18 93.2 9.4 103 26-132 60-169 (249)
21 smart00404 PTPc_motif Protein 99.4 2.1E-12 4.6E-17 79.6 7.1 57 79-135 4-63 (105)
22 smart00012 PTPc_DSPc Protein t 99.4 2.1E-12 4.6E-17 79.6 7.1 57 79-135 4-63 (105)
23 KOG2836|consensus 99.4 9.3E-12 2E-16 79.2 9.1 106 23-134 6-120 (173)
24 PF14566 PTPlike_phytase: Inos 99.3 1E-11 2.3E-16 81.9 5.6 64 70-135 85-148 (149)
25 cd00047 PTPc Protein tyrosine 99.1 1.5E-10 3.2E-15 81.3 5.2 60 75-134 127-189 (231)
26 smart00194 PTPc Protein tyrosi 99.0 7.2E-10 1.6E-14 79.1 6.2 51 84-134 165-216 (258)
27 KOG2283|consensus 99.0 7.7E-10 1.7E-14 83.8 5.3 104 25-136 14-132 (434)
28 PHA02740 protein tyrosine phos 99.0 1.1E-09 2.5E-14 79.7 6.0 51 83-133 184-243 (298)
29 PRK15375 pathogenicity island 99.0 1.6E-09 3.4E-14 82.8 6.8 52 84-135 430-490 (535)
30 COG5350 Predicted protein tyro 98.9 2.4E-09 5.1E-14 69.6 5.8 87 39-130 20-112 (172)
31 PHA02738 hypothetical protein; 98.9 1.9E-09 4.1E-14 79.3 5.8 51 83-133 185-249 (320)
32 PHA02742 protein tyrosine phos 98.9 1.6E-09 3.4E-14 79.2 5.2 52 83-134 189-252 (303)
33 PHA02747 protein tyrosine phos 98.9 2.9E-09 6.3E-14 78.1 6.5 50 84-133 191-251 (312)
34 COG2365 Protein tyrosine/serin 98.9 2.3E-09 5E-14 76.3 4.6 105 26-134 47-159 (249)
35 PHA02746 protein tyrosine phos 98.9 3.2E-09 6.8E-14 78.3 4.9 50 84-133 209-269 (323)
36 COG5599 PTP2 Protein tyrosine 98.8 4.9E-09 1.1E-13 73.9 3.1 98 22-133 137-240 (302)
37 KOG0792|consensus 98.7 4E-08 8.7E-13 80.0 5.3 50 84-133 1035-1085(1144)
38 PF00102 Y_phosphatase: Protei 98.6 8.9E-08 1.9E-12 66.9 6.4 52 84-135 142-194 (235)
39 PF04179 Init_tRNA_PT: Initiat 98.5 7.4E-07 1.6E-11 68.2 7.8 101 29-135 292-400 (451)
40 KOG0791|consensus 98.4 6.4E-07 1.4E-11 65.9 5.0 99 21-131 207-307 (374)
41 KOG2386|consensus 98.3 7.6E-07 1.6E-11 66.6 4.5 90 43-135 53-148 (393)
42 KOG0790|consensus 98.3 8.2E-07 1.8E-11 66.9 3.3 86 45-130 374-470 (600)
43 KOG0789|consensus 98.1 8.7E-06 1.9E-10 61.7 5.6 23 110-132 298-320 (415)
44 KOG4228|consensus 97.8 1.1E-05 2.5E-10 66.5 2.7 49 79-130 697-749 (1087)
45 KOG0793|consensus 97.6 0.00013 2.8E-09 58.2 5.7 98 33-130 804-946 (1004)
46 KOG4228|consensus 96.6 0.0026 5.7E-08 53.1 4.1 24 111-134 1018-1041(1087)
47 PLN02160 thiosulfate sulfurtra 96.6 0.0059 1.3E-07 39.6 4.9 22 108-130 78-99 (136)
48 KOG4471|consensus 96.4 0.0068 1.5E-07 47.8 5.0 34 98-131 361-394 (717)
49 cd01518 RHOD_YceA Member of th 96.4 0.024 5.2E-07 34.4 6.5 23 109-133 59-81 (101)
50 PRK01415 hypothetical protein; 96.2 0.022 4.7E-07 40.7 6.3 81 35-134 110-192 (247)
51 PF06602 Myotub-related: Myotu 95.7 0.034 7.4E-07 41.8 5.8 23 109-131 229-251 (353)
52 COG0607 PspE Rhodanese-related 95.7 0.047 1E-06 33.3 5.5 65 46-130 14-79 (110)
53 cd01523 RHOD_Lact_B Member of 95.3 0.15 3.2E-06 30.8 6.8 21 109-130 59-79 (100)
54 KOG1089|consensus 95.1 0.061 1.3E-06 42.6 5.4 32 100-131 332-364 (573)
55 PRK00142 putative rhodanese-re 94.9 0.079 1.7E-06 39.2 5.4 23 110-134 170-192 (314)
56 cd01522 RHOD_1 Member of the R 94.5 0.28 6.1E-06 30.7 6.7 66 52-130 15-82 (117)
57 cd01448 TST_Repeat_1 Thiosulfa 94.2 0.27 5.8E-06 30.8 6.0 24 109-133 77-100 (122)
58 PRK05320 rhodanese superfamily 94.1 0.21 4.6E-06 35.9 6.0 23 110-134 174-196 (257)
59 PF00581 Rhodanese: Rhodanese- 93.9 0.49 1.1E-05 28.7 6.7 74 49-131 10-86 (113)
60 KOG1530|consensus 93.9 0.12 2.6E-06 33.2 3.9 74 43-128 29-105 (136)
61 cd01520 RHOD_YbbB Member of th 92.6 0.7 1.5E-05 29.3 6.1 22 108-129 83-104 (128)
62 cd01528 RHOD_2 Member of the R 92.6 0.4 8.7E-06 28.9 4.8 18 110-128 57-74 (101)
63 cd01519 RHOD_HSP67B2 Member of 92.2 0.26 5.7E-06 29.8 3.7 19 109-128 64-82 (106)
64 cd01527 RHOD_YgaP Member of th 91.7 0.56 1.2E-05 28.1 4.7 20 109-129 52-71 (99)
65 PF14671 DSPn: Dual specificit 91.1 0.61 1.3E-05 30.5 4.6 50 85-135 38-94 (141)
66 PRK11784 tRNA 2-selenouridine 90.9 1.7 3.7E-05 32.7 7.4 21 110-130 87-107 (345)
67 COG1054 Predicted sulfurtransf 90.3 2 4.3E-05 31.6 7.0 86 29-133 105-192 (308)
68 smart00450 RHOD Rhodanese Homo 90.0 1.1 2.5E-05 26.1 4.9 19 109-128 54-72 (100)
69 cd01533 4RHOD_Repeat_2 Member 89.1 1.1 2.3E-05 27.4 4.4 17 110-127 65-81 (109)
70 PRK10886 DnaA initiator-associ 89.0 1.1 2.4E-05 31.0 4.7 36 94-132 24-59 (196)
71 cd01534 4RHOD_Repeat_3 Member 89.0 1.3 2.9E-05 26.3 4.6 18 110-128 55-72 (95)
72 PF04343 DUF488: Protein of un 88.9 2 4.4E-05 27.0 5.7 43 45-87 7-54 (122)
73 PF02571 CbiJ: Precorrin-6x re 88.9 0.67 1.4E-05 33.2 3.8 83 32-116 46-135 (249)
74 PF03668 ATP_bind_2: P-loop AT 88.8 1.4 3.1E-05 32.2 5.4 18 113-130 244-261 (284)
75 COG1660 Predicted P-loop-conta 88.7 1.2 2.6E-05 32.3 4.8 35 96-130 221-262 (286)
76 cd01531 Acr2p Eukaryotic arsen 87.8 4.5 9.7E-05 24.8 6.6 21 110-130 61-81 (113)
77 COG0279 GmhA Phosphoheptose is 87.4 1.3 2.9E-05 29.8 4.1 32 92-126 22-53 (176)
78 TIGR03865 PQQ_CXXCW PQQ-depend 87.2 2.4 5.3E-05 28.2 5.4 21 109-129 114-134 (162)
79 PRK13938 phosphoheptose isomer 86.8 2 4.4E-05 29.6 5.0 39 91-132 25-63 (196)
80 TIGR03167 tRNA_sel_U_synt tRNA 86.4 3.7 7.9E-05 30.5 6.4 20 111-130 74-93 (311)
81 PRK05416 glmZ(sRNA)-inactivati 86.3 2.2 4.8E-05 31.3 5.2 36 95-130 222-264 (288)
82 PRK08057 cobalt-precorrin-6x r 86.3 1.6 3.4E-05 31.3 4.3 81 32-116 45-132 (248)
83 TIGR02981 phageshock_pspE phag 86.2 1.9 4.1E-05 26.3 4.2 19 110-129 57-75 (101)
84 PRK05600 thiamine biosynthesis 86.0 1.9 4.2E-05 32.7 4.9 20 112-133 333-352 (370)
85 cd01449 TST_Repeat_2 Thiosulfa 85.9 1.2 2.7E-05 27.4 3.3 20 109-129 76-95 (118)
86 cd01443 Cdc25_Acr2p Cdc25 enzy 84.9 6.8 0.00015 24.0 6.9 18 111-128 66-83 (113)
87 PRK07411 hypothetical protein; 83.6 2.6 5.6E-05 32.2 4.7 18 110-128 341-358 (390)
88 PRK00162 glpE thiosulfate sulf 82.9 8.2 0.00018 23.4 6.2 18 109-127 56-73 (108)
89 PF10302 DUF2407: DUF2407 ubiq 80.7 0.94 2E-05 27.7 1.2 10 112-121 86-95 (97)
90 PRK11493 sseA 3-mercaptopyruva 79.7 1.2 2.7E-05 32.2 1.7 19 109-128 229-247 (281)
91 PRK10287 thiosulfate:cyanide s 79.5 4.7 0.0001 24.8 4.1 20 110-130 59-78 (104)
92 COG0794 GutQ Predicted sugar p 79.1 4.6 0.0001 28.1 4.3 35 95-135 26-60 (202)
93 PRK05728 DNA polymerase III su 78.6 4.6 9.9E-05 26.3 4.0 26 96-121 14-39 (142)
94 cd01532 4RHOD_Repeat_1 Member 78.3 3.8 8.3E-05 24.2 3.3 24 110-133 49-72 (92)
95 PF13292 DXP_synthase_N: 1-deo 77.8 3.8 8.3E-05 29.7 3.7 40 71-118 229-268 (270)
96 COG2927 HolC DNA polymerase II 77.5 3.2 7E-05 27.2 3.0 22 99-120 17-38 (144)
97 cd01529 4RHOD_Repeats Member o 77.2 3 6.4E-05 24.7 2.6 23 109-133 54-76 (96)
98 PF13580 SIS_2: SIS domain; PD 77.1 6 0.00013 25.4 4.2 33 93-128 17-49 (138)
99 COG2897 SseA Rhodanese-related 77.0 1.8 3.8E-05 31.8 1.8 18 108-125 231-248 (285)
100 TIGR00715 precor6x_red precorr 76.8 3.7 8E-05 29.6 3.4 84 33-116 47-134 (256)
101 cd01447 Polysulfide_ST Polysul 76.4 3.8 8.3E-05 24.3 3.0 18 109-127 59-76 (103)
102 cd01444 GlpE_ST GlpE sulfurtra 75.8 4.2 9E-05 23.9 3.0 20 108-128 53-72 (96)
103 cd01526 RHOD_ThiF Member of th 75.3 4.2 9.1E-05 25.4 3.1 19 109-128 70-88 (122)
104 PF04364 DNA_pol3_chi: DNA pol 74.2 5.8 0.00013 25.6 3.6 24 97-120 15-38 (137)
105 PRK06646 DNA polymerase III su 72.8 8.3 0.00018 25.6 4.0 27 95-121 13-39 (154)
106 cd01530 Cdc25 Cdc25 phosphatas 72.1 6 0.00013 24.8 3.2 21 109-130 66-87 (121)
107 PF10673 DUF2487: Protein of u 72.0 25 0.00054 23.1 6.9 20 45-64 78-97 (142)
108 PRK05772 translation initiatio 71.7 8.4 0.00018 29.3 4.3 15 108-122 164-178 (363)
109 PRK06036 translation initiatio 71.3 6.4 0.00014 29.6 3.6 17 109-125 146-162 (339)
110 cd01525 RHOD_Kc Member of the 70.2 6.5 0.00014 23.5 3.0 19 111-130 65-83 (105)
111 COG2099 CobK Precorrin-6x redu 69.2 9.8 0.00021 27.5 4.0 81 33-116 47-133 (257)
112 PRK08057 cobalt-precorrin-6x r 68.7 16 0.00035 26.2 5.1 70 37-107 176-246 (248)
113 cd00158 RHOD Rhodanese Homolog 67.6 20 0.00043 20.2 5.3 18 109-127 48-65 (89)
114 PF14532 Sigma54_activ_2: Sigm 66.6 19 0.00041 22.9 4.8 34 95-128 5-38 (138)
115 TIGR00512 salvage_mtnA S-methy 65.6 13 0.00028 27.9 4.2 14 108-121 140-157 (331)
116 COG0084 TatD Mg-dependent DNas 65.4 14 0.0003 26.7 4.2 31 95-125 109-139 (256)
117 TIGR00640 acid_CoA_mut_C methy 65.1 10 0.00022 24.4 3.2 31 32-62 86-116 (132)
118 PRK08762 molybdopterin biosynt 64.9 34 0.00074 26.0 6.5 18 109-127 55-72 (376)
119 cd01521 RHOD_PspE2 Member of t 64.6 11 0.00024 23.0 3.2 22 108-129 61-83 (110)
120 TIGR03642 cas_csx13 CRISPR-ass 64.2 35 0.00077 21.8 5.5 51 83-134 59-112 (124)
121 TIGR03217 4OH_2_O_val_ald 4-hy 63.9 60 0.0013 24.4 8.1 76 46-123 122-200 (333)
122 COG3564 Uncharacterized protei 63.9 13 0.00028 22.7 3.2 26 97-122 10-35 (116)
123 cd02071 MM_CoA_mut_B12_BD meth 63.3 9.3 0.0002 24.0 2.8 32 32-63 83-114 (122)
124 cd01317 DHOase_IIa Dihydroorot 62.6 65 0.0014 24.3 7.9 18 102-119 124-141 (374)
125 PF02571 CbiJ: Precorrin-6x re 61.7 21 0.00046 25.6 4.6 69 36-105 179-248 (249)
126 cd07944 DRE_TIM_HOA_like 4-hyd 61.6 59 0.0013 23.5 7.8 76 46-123 117-195 (266)
127 COG1448 TyrB Aspartate/tyrosin 61.4 31 0.00068 26.5 5.5 66 47-118 114-179 (396)
128 COG1154 Dxs Deoxyxylulose-5-ph 61.3 16 0.00034 29.8 4.1 41 72-120 238-278 (627)
129 TIGR00190 thiC thiamine biosyn 61.2 68 0.0015 25.0 7.3 83 47-135 86-194 (423)
130 cd03174 DRE_TIM_metallolyase D 60.0 58 0.0013 22.9 7.7 73 46-121 123-200 (265)
131 COG0182 Predicted translation 59.8 15 0.00034 27.5 3.6 15 108-122 147-161 (346)
132 PRK09284 thiamine biosynthesis 59.7 61 0.0013 26.3 7.0 83 47-135 241-347 (607)
133 PF06415 iPGM_N: BPG-independe 58.7 14 0.00031 26.1 3.2 29 98-126 46-76 (223)
134 PF09707 Cas_Cas2CT1978: CRISP 58.6 5.3 0.00011 23.9 0.9 19 23-41 18-36 (86)
135 PRK08195 4-hyroxy-2-oxovalerat 57.9 79 0.0017 23.8 8.4 76 46-123 123-201 (337)
136 cd01720 Sm_D2 The eukaryotic S 57.8 17 0.00037 21.7 3.0 25 101-125 4-28 (87)
137 PLN02444 HMP-P synthase 57.3 64 0.0014 26.3 6.8 83 47-135 246-352 (642)
138 PLN02225 1-deoxy-D-xylulose-5- 57.3 22 0.00048 29.6 4.5 46 71-124 320-367 (701)
139 PF13378 MR_MLE_C: Enolase C-t 57.0 19 0.0004 21.9 3.3 23 97-119 32-54 (111)
140 PRK01269 tRNA s(4)U8 sulfurtra 57.0 20 0.00043 28.3 4.1 20 109-129 447-466 (482)
141 PRK06371 translation initiatio 56.9 18 0.0004 27.1 3.7 21 102-122 128-148 (329)
142 PRK09629 bifunctional thiosulf 56.8 17 0.00036 29.7 3.7 20 109-129 221-240 (610)
143 TIGR00204 dxs 1-deoxy-D-xylulo 56.4 23 0.00049 29.0 4.4 40 73-120 234-273 (617)
144 PRK02947 hypothetical protein; 55.8 42 0.00092 23.9 5.3 35 93-130 22-56 (246)
145 PRK08334 translation initiatio 55.7 16 0.00035 27.8 3.2 12 110-122 160-171 (356)
146 TIGR00715 precor6x_red precorr 55.5 36 0.00077 24.6 4.9 72 36-107 182-254 (256)
147 COG3265 GntK Gluconate kinase 55.0 20 0.00042 24.0 3.2 35 83-120 42-76 (161)
148 PF01964 ThiC: ThiC family; I 54.4 29 0.00063 26.9 4.4 87 47-135 85-193 (420)
149 PF00762 Ferrochelatase: Ferro 54.4 21 0.00046 26.5 3.7 63 26-89 230-301 (316)
150 PRK11449 putative deoxyribonuc 52.6 42 0.00091 24.1 4.9 29 94-122 110-138 (258)
151 PRK05720 mtnA methylthioribose 52.5 35 0.00075 25.8 4.6 18 108-125 144-161 (344)
152 PRK13936 phosphoheptose isomer 52.2 60 0.0013 22.2 5.5 32 95-129 27-58 (197)
153 cd04866 LigD_Pol_like_3 LigD_P 51.6 60 0.0013 23.0 5.4 53 76-132 137-204 (223)
154 PLN02723 3-mercaptopyruvate su 51.3 16 0.00035 27.1 2.7 19 109-128 267-285 (320)
155 PRK12446 undecaprenyldiphospho 51.0 1E+02 0.0022 23.1 8.7 62 74-135 47-114 (352)
156 PRK08335 translation initiatio 50.8 23 0.0005 25.9 3.3 14 108-121 107-120 (275)
157 KOG1611|consensus 50.4 70 0.0015 23.0 5.5 70 45-119 22-92 (249)
158 smart00488 DEXDc2 DEAD-like he 50.4 51 0.0011 24.1 5.1 36 98-133 14-49 (289)
159 smart00489 DEXDc3 DEAD-like he 50.4 51 0.0011 24.1 5.1 36 98-133 14-49 (289)
160 PF10727 Rossmann-like: Rossma 49.9 9.8 0.00021 24.4 1.2 40 78-124 69-109 (127)
161 KOG3354|consensus 49.6 27 0.00059 23.7 3.2 36 83-121 59-94 (191)
162 PF03102 NeuB: NeuB family; I 49.2 44 0.00096 23.9 4.5 29 92-121 123-151 (241)
163 PRK10812 putative DNAse; Provi 49.0 43 0.00094 24.1 4.5 30 94-123 107-136 (265)
164 cd01524 RHOD_Pyr_redox Member 48.8 25 0.00053 20.4 2.8 20 108-128 48-67 (90)
165 KOG1905|consensus 48.5 25 0.00055 26.2 3.2 36 91-126 35-70 (353)
166 cd00530 PTE Phosphotriesterase 47.6 37 0.00079 24.5 4.0 27 95-121 133-159 (293)
167 PF10096 DUF2334: Uncharacteri 47.4 69 0.0015 22.8 5.3 26 94-119 51-76 (243)
168 cd01310 TatD_DNAse TatD like p 46.6 39 0.00083 23.4 3.9 24 98-121 108-131 (251)
169 PRK13352 thiamine biosynthesis 46.6 1.4E+02 0.0031 23.4 7.0 83 47-135 86-197 (431)
170 PF01026 TatD_DNase: TatD rela 46.1 20 0.00043 25.5 2.4 35 91-125 104-138 (255)
171 PLN02449 ferrochelatase 46.1 94 0.002 24.8 6.2 80 26-110 327-415 (485)
172 cd01535 4RHOD_Repeat_4 Member 45.6 54 0.0012 21.2 4.2 23 109-133 47-69 (145)
173 KOG1529|consensus 45.3 23 0.0005 26.0 2.6 27 107-133 232-258 (286)
174 PF04263 TPK_catalytic: Thiami 45.2 78 0.0017 20.0 5.9 46 71-125 53-98 (123)
175 PRK10425 DNase TatD; Provision 45.1 41 0.00089 24.2 3.9 27 95-121 105-131 (258)
176 PRK00414 gmhA phosphoheptose i 45.0 68 0.0015 21.9 4.8 33 93-128 26-58 (192)
177 COG3233 Predicted deacetylase 44.0 53 0.0012 23.3 4.1 67 52-120 6-76 (233)
178 PLN02582 1-deoxy-D-xylulose-5- 44.0 60 0.0013 27.0 5.0 41 72-120 277-319 (677)
179 PRK09287 6-phosphogluconate de 44.0 76 0.0016 25.0 5.4 69 52-120 82-163 (459)
180 PLN02790 transketolase 43.5 46 0.001 27.5 4.4 47 71-124 194-241 (654)
181 TIGR00010 hydrolase, TatD fami 43.4 66 0.0014 22.3 4.7 25 96-120 106-130 (252)
182 PRK05993 short chain dehydroge 43.4 1E+02 0.0022 21.9 5.7 63 45-119 22-84 (277)
183 PF01026 TatD_DNase: TatD rela 43.2 48 0.001 23.6 4.0 27 96-122 134-160 (255)
184 TIGR01873 cas_CT1978 CRISPR-as 43.1 13 0.00027 22.3 0.8 19 23-41 18-36 (87)
185 TIGR00524 eIF-2B_rel eIF-2B al 42.8 33 0.0007 25.4 3.1 13 109-121 117-129 (303)
186 COG5456 Predicted integral mem 42.3 34 0.00074 22.7 2.8 52 10-61 29-83 (166)
187 KOG0235|consensus 42.2 54 0.0012 23.1 4.0 32 94-125 135-170 (214)
188 PRK15129 L-Ala-D/L-Glu epimera 42.0 30 0.00064 25.7 2.9 25 97-121 254-278 (321)
189 KOG3020|consensus 41.4 36 0.00077 25.2 3.1 9 113-121 176-184 (296)
190 TIGR03569 NeuB_NnaB N-acetylne 41.1 1.3E+02 0.0028 22.6 6.1 29 93-121 144-173 (329)
191 TIGR02990 ectoine_eutA ectoine 41.1 1.2E+02 0.0025 21.7 5.6 74 45-120 113-191 (239)
192 PLN03134 glycine-rich RNA-bind 41.1 89 0.0019 20.3 4.7 34 26-59 30-65 (144)
193 PF00255 GSHPx: Glutathione pe 41.0 60 0.0013 20.1 3.7 39 51-89 22-65 (108)
194 cd05006 SIS_GmhA Phosphoheptos 40.5 97 0.0021 20.5 5.0 34 93-129 15-48 (177)
195 COG5016 Pyruvate/oxaloacetate 40.2 84 0.0018 24.6 4.9 46 71-120 163-208 (472)
196 TIGR03675 arCOG00543 arCOG0054 39.6 97 0.0021 25.6 5.6 36 93-129 384-419 (630)
197 PRK11558 putative ssRNA endonu 39.6 15 0.00033 22.4 0.8 19 23-41 20-38 (97)
198 cd03796 GT1_PIG-A_like This fa 39.5 1.5E+02 0.0032 22.3 6.4 74 45-122 25-98 (398)
199 PRK12571 1-deoxy-D-xylulose-5- 39.3 54 0.0012 27.0 4.1 42 71-120 240-282 (641)
200 COG2099 CobK Precorrin-6x redu 39.3 1.5E+02 0.0032 21.6 6.1 70 36-106 181-250 (257)
201 cd04861 LigD_Pol_like LigD_Pol 39.2 1.2E+02 0.0027 21.6 5.4 51 76-132 142-208 (227)
202 PF02775 TPP_enzyme_C: Thiamin 39.2 53 0.0011 21.2 3.5 21 98-118 133-153 (153)
203 COG0386 BtuE Glutathione perox 38.9 61 0.0013 21.7 3.6 52 50-101 25-83 (162)
204 PF03807 F420_oxidored: NADP o 38.9 45 0.00097 19.4 2.9 24 96-121 73-96 (96)
205 PRK12315 1-deoxy-D-xylulose-5- 38.9 79 0.0017 25.7 5.0 42 72-121 202-243 (581)
206 cd07943 DRE_TIM_HOA 4-hydroxy- 38.6 1.5E+02 0.0032 21.3 7.9 75 46-123 120-197 (263)
207 cd08175 G1PDH Glycerol-1-phosp 38.2 1.3E+02 0.0029 22.4 5.8 76 31-106 2-79 (348)
208 TIGR02638 lactal_redase lactal 37.5 1.5E+02 0.0034 22.4 6.2 86 31-121 8-96 (379)
209 COG3268 Uncharacterized conser 37.5 1.2E+02 0.0027 23.1 5.4 66 50-123 70-135 (382)
210 PRK15378 inositol phosphate ph 36.8 14 0.0003 29.3 0.4 20 111-130 456-475 (564)
211 TIGR01120 rpiB ribose 5-phosph 36.7 1.2E+02 0.0026 19.9 4.7 48 74-125 22-71 (143)
212 cd08197 DOIS 2-deoxy-scyllo-in 36.4 1.9E+02 0.0041 21.9 6.5 89 33-121 4-94 (355)
213 TIGR01927 menC_gamma/gm+ o-suc 36.0 55 0.0012 24.1 3.5 32 97-128 243-276 (307)
214 PRK12331 oxaloacetate decarbox 35.9 2.2E+02 0.0047 22.5 6.9 79 46-128 131-216 (448)
215 cd04864 LigD_Pol_like_1 LigD_P 35.7 62 0.0013 23.1 3.5 48 80-132 146-209 (228)
216 COG0422 ThiC Thiamine biosynth 35.7 2.1E+02 0.0046 22.3 6.8 79 48-135 88-195 (432)
217 COG2230 Cfa Cyclopropane fatty 35.6 61 0.0013 23.9 3.5 37 96-132 154-194 (283)
218 COG0696 GpmI Phosphoglyceromut 35.2 80 0.0017 25.2 4.2 56 76-133 107-164 (509)
219 PRK05105 O-succinylbenzoate sy 35.1 57 0.0012 24.2 3.5 35 97-131 244-280 (322)
220 PHA03338 US22 family homolog; 34.9 33 0.0007 25.4 2.0 20 115-134 160-179 (344)
221 PF12683 DUF3798: Protein of u 34.7 1.4E+02 0.0029 22.0 5.1 72 47-121 126-209 (275)
222 PF08353 DUF1727: Domain of un 33.9 60 0.0013 20.3 2.9 65 42-118 44-108 (113)
223 PLN02234 1-deoxy-D-xylulose-5- 33.7 84 0.0018 26.0 4.4 43 71-121 277-321 (641)
224 TIGR01119 lacB galactose-6-pho 33.7 1.3E+02 0.0029 20.4 4.7 13 113-125 60-72 (171)
225 PRK11070 ssDNA exonuclease Rec 33.6 93 0.002 25.4 4.6 31 90-120 48-78 (575)
226 cd04865 LigD_Pol_like_2 LigD_P 33.6 1.6E+02 0.0035 21.0 5.3 51 76-132 143-209 (228)
227 PF13579 Glyco_trans_4_4: Glyc 33.5 54 0.0012 20.3 2.8 69 45-120 12-81 (160)
228 COG2089 SpsE Sialic acid synth 33.5 68 0.0015 24.3 3.5 30 92-122 157-186 (347)
229 TIGR00689 rpiB_lacA_lacB sugar 33.5 1.3E+02 0.0028 19.8 4.5 48 74-125 21-70 (144)
230 PF00076 RRM_1: RNA recognitio 33.3 46 0.00099 17.6 2.2 17 33-49 1-17 (70)
231 cd07995 TPK Thiamine pyrophosp 33.2 1.2E+02 0.0026 20.9 4.6 45 72-125 59-104 (208)
232 PRK05571 ribose-5-phosphate is 33.2 1.4E+02 0.003 19.7 4.6 12 113-125 62-73 (148)
233 cd00308 enolase_like Enolase-s 33.1 74 0.0016 22.1 3.6 30 97-126 182-213 (229)
234 PF10740 DUF2529: Protein of u 33.1 85 0.0018 21.3 3.6 28 93-120 20-47 (172)
235 COG0149 TpiA Triosephosphate i 33.0 1.3E+02 0.0029 21.8 4.8 79 46-124 116-213 (251)
236 PF09345 DUF1987: Domain of un 32.9 95 0.0021 19.0 3.6 38 81-119 47-84 (99)
237 PF05582 Peptidase_U57: YabG p 32.6 23 0.00049 26.1 0.9 11 109-119 225-235 (287)
238 KOG0348|consensus 32.6 70 0.0015 26.1 3.6 31 26-57 238-268 (708)
239 PF12091 DUF3567: Protein of u 32.5 71 0.0015 19.0 2.8 25 91-117 61-85 (85)
240 COG0205 PfkA 6-phosphofructoki 32.4 2.3E+02 0.0049 21.6 8.4 77 45-124 88-175 (347)
241 TIGR01928 menC_lowGC/arch o-su 32.3 94 0.002 23.0 4.2 37 97-133 260-298 (324)
242 PRK10624 L-1,2-propanediol oxi 32.3 1.8E+02 0.004 22.1 5.8 86 31-121 9-97 (382)
243 TIGR02855 spore_yabG sporulati 32.1 24 0.00051 25.9 1.0 11 110-120 225-235 (283)
244 PF13344 Hydrolase_6: Haloacid 32.0 1.1E+02 0.0025 18.3 3.9 33 97-130 16-48 (101)
245 PRK08535 translation initiatio 31.9 67 0.0015 23.8 3.3 12 109-120 119-130 (310)
246 PRK14118 gpmA phosphoglyceromu 31.9 1.1E+02 0.0023 21.4 4.3 35 91-125 149-187 (227)
247 COG0406 phoE Broad specificity 31.9 91 0.002 21.1 3.9 34 91-124 123-158 (208)
248 cd04863 MtLigD_Pol_like MtLigD 31.8 74 0.0016 22.7 3.4 48 80-132 149-212 (231)
249 PF00676 E1_dh: Dehydrogenase 31.8 85 0.0019 23.1 3.9 40 75-119 184-223 (300)
250 PRK07634 pyrroline-5-carboxyla 31.7 79 0.0017 22.0 3.6 27 97-125 79-105 (245)
251 PF00682 HMGL-like: HMGL-like 31.6 1.8E+02 0.0039 20.2 6.7 83 45-130 115-202 (237)
252 PRK08622 galactose-6-phosphate 31.6 1.4E+02 0.0031 20.2 4.6 13 113-125 60-72 (171)
253 PF00308 Bac_DnaA: Bacterial d 31.6 1.5E+02 0.0033 20.6 5.0 20 112-131 35-54 (219)
254 TIGR02133 RPI_actino ribose 5- 31.4 1.5E+02 0.0033 19.5 4.6 12 113-125 62-73 (148)
255 cd06831 PLPDE_III_ODC_like_AZI 31.4 2.4E+02 0.0053 21.6 6.5 31 33-64 84-114 (394)
256 KOG1549|consensus 31.3 67 0.0015 25.1 3.3 44 54-99 133-176 (428)
257 KOG4388|consensus 31.3 59 0.0013 26.9 3.0 11 111-121 395-405 (880)
258 PF09623 Cas_NE0113: CRISPR-as 31.2 1.3E+02 0.0028 21.4 4.5 37 97-133 97-133 (224)
259 COG2185 Sbm Methylmalonyl-CoA 30.9 69 0.0015 21.1 2.9 38 45-84 85-122 (143)
260 PRK07878 molybdopterin biosynt 30.9 59 0.0013 24.9 3.0 19 109-128 341-359 (392)
261 PF03959 FSH1: Serine hydrolas 30.6 33 0.00073 23.6 1.5 42 91-134 80-121 (212)
262 PRK12615 galactose-6-phosphate 30.5 1.5E+02 0.0032 20.2 4.5 13 113-125 60-72 (171)
263 PF02375 JmjN: jmjN domain; I 30.4 51 0.0011 15.9 1.7 21 92-112 5-25 (34)
264 PRK15454 ethanol dehydrogenase 30.3 2E+02 0.0043 22.1 5.8 86 31-121 28-116 (395)
265 PF08974 DUF1877: Domain of un 30.3 1.1E+02 0.0025 20.3 4.0 24 94-117 143-166 (167)
266 PTZ00138 small nuclear ribonuc 30.1 69 0.0015 19.2 2.6 22 103-124 18-39 (89)
267 TIGR00511 ribulose_e2b2 ribose 30.0 79 0.0017 23.4 3.4 13 108-120 113-125 (301)
268 PF02673 BacA: Bacitracin resi 30.0 39 0.00085 24.4 1.8 16 119-134 159-174 (259)
269 COG2243 CobF Precorrin-2 methy 29.9 1.4E+02 0.003 21.4 4.5 44 76-119 55-98 (234)
270 KOG0397|consensus 29.9 1.2E+02 0.0027 19.9 3.8 12 109-120 61-72 (176)
271 TIGR01307 pgm_bpd_ind 2,3-bisp 29.8 1.2E+02 0.0026 24.4 4.5 54 77-133 105-161 (501)
272 PRK10318 hypothetical protein; 29.8 75 0.0016 20.3 2.8 27 98-124 71-101 (121)
273 cd02008 TPP_IOR_alpha Thiamine 29.7 64 0.0014 21.5 2.7 25 95-119 151-175 (178)
274 cd08189 Fe-ADH5 Iron-containin 29.7 2.1E+02 0.0046 21.7 5.8 85 32-121 6-93 (374)
275 cd02007 TPP_DXS Thiamine pyrop 29.4 70 0.0015 21.9 2.9 23 98-120 167-189 (195)
276 cd01294 DHOase Dihydroorotase 29.4 75 0.0016 23.5 3.3 24 98-121 113-136 (335)
277 PF05925 IpgD: Enterobacterial 29.4 18 0.00039 28.9 0.0 21 110-130 452-472 (559)
278 COG1964 Predicted Fe-S oxidore 29.3 2.9E+02 0.0064 22.0 8.0 83 34-116 116-206 (475)
279 PRK14116 gpmA phosphoglyceromu 29.3 1.3E+02 0.0029 20.9 4.4 35 91-125 150-188 (228)
280 cd03316 MR_like Mandelate race 29.3 1.2E+02 0.0026 22.6 4.4 25 97-121 277-301 (357)
281 PF09002 DUF1887: Domain of un 29.2 2.6E+02 0.0057 21.4 7.8 93 35-133 8-104 (381)
282 TIGR02764 spore_ybaN_pdaB poly 29.2 1.8E+02 0.0039 19.4 5.8 49 73-125 116-166 (191)
283 COG3867 Arabinogalactan endo-1 29.1 2.3E+02 0.005 21.5 5.5 48 70-117 69-123 (403)
284 PRK09629 bifunctional thiosulf 28.8 2.2E+02 0.0048 23.4 6.0 18 109-126 79-96 (610)
285 PF13899 Thioredoxin_7: Thiore 28.7 58 0.0013 18.5 2.1 19 102-120 8-26 (82)
286 COG4860 Uncharacterized protei 28.6 1.8E+02 0.0039 19.3 4.4 40 93-132 109-148 (170)
287 cd03323 D-glucarate_dehydratas 28.4 94 0.002 23.9 3.7 31 97-127 298-330 (395)
288 PF00158 Sigma54_activat: Sigm 28.4 1.8E+02 0.004 19.3 5.3 33 95-127 6-38 (168)
289 PF01904 DUF72: Protein of unk 28.4 2.1E+02 0.0046 20.0 8.9 77 42-120 133-213 (230)
290 PRK14071 6-phosphofructokinase 28.3 2.7E+02 0.0059 21.2 7.2 82 44-129 100-192 (360)
291 KOG1018|consensus 28.2 93 0.002 21.0 3.3 29 92-121 10-43 (169)
292 smart00411 BHL bacterial (prok 28.2 1.3E+02 0.0028 17.4 3.6 27 91-117 19-45 (90)
293 cd02002 TPP_BFDC Thiamine pyro 28.2 87 0.0019 20.7 3.2 23 97-119 155-177 (178)
294 cd02072 Glm_B12_BD B12 binding 28.1 83 0.0018 20.2 2.9 26 32-57 83-114 (128)
295 cd04862 PaeLigD_Pol_like PaeLi 27.9 96 0.0021 22.1 3.4 23 109-132 186-208 (227)
296 KOG0538|consensus 27.8 2E+02 0.0043 21.8 5.0 34 24-57 216-250 (363)
297 PRK06463 fabG 3-ketoacyl-(acyl 27.8 2.1E+02 0.0046 19.8 6.1 65 45-121 25-89 (255)
298 COG0276 HemH Protoheme ferro-l 27.6 1.6E+02 0.0035 22.2 4.6 77 26-107 232-317 (320)
299 cd03315 MLE_like Muconate lact 27.5 83 0.0018 22.4 3.2 32 97-128 217-250 (265)
300 cd00079 HELICc Helicase superf 27.4 1.4E+02 0.0031 17.8 4.4 25 96-120 13-37 (131)
301 PF09419 PGP_phosphatase: Mito 27.4 46 0.001 22.4 1.7 30 26-56 14-45 (168)
302 PRK11858 aksA trans-homoaconit 27.3 2.8E+02 0.0062 21.1 8.9 74 46-123 124-200 (378)
303 PRK05986 cob(I)alamin adenolsy 27.2 2E+02 0.0042 19.9 4.7 21 109-129 20-40 (191)
304 PRK05434 phosphoglyceromutase; 27.1 1.4E+02 0.0031 23.9 4.6 55 76-133 108-165 (507)
305 PRK05451 dihydroorotase; Provi 26.8 90 0.002 23.4 3.3 21 100-120 120-140 (345)
306 COG4936 PocR Predicted sensor 26.8 1.6E+02 0.0035 19.5 4.0 48 74-122 21-86 (169)
307 PRK07414 cob(I)yrinic acid a,c 26.8 95 0.0021 21.2 3.1 22 108-129 18-39 (178)
308 PRK13107 preprotein translocas 26.8 1.7E+02 0.0038 25.4 5.2 49 72-120 401-458 (908)
309 PF11871 DUF3391: Domain of un 26.7 65 0.0014 20.0 2.2 22 40-61 37-58 (128)
310 PF08114 PMP1_2: ATPase proteo 26.6 29 0.00062 17.6 0.4 13 110-122 7-19 (43)
311 cd07937 DRE_TIM_PC_TC_5S Pyruv 26.6 2.5E+02 0.0055 20.3 8.2 74 46-123 126-204 (275)
312 TIGR02571 ComEB ComE operon pr 26.4 2E+02 0.0042 19.0 4.5 51 32-84 89-139 (151)
313 TIGR00109 hemH ferrochelatase. 26.3 1.4E+02 0.003 22.3 4.2 63 26-89 235-306 (322)
314 COG5495 Uncharacterized conser 26.3 75 0.0016 23.0 2.6 20 102-121 82-101 (289)
315 PTZ00215 ribose 5-phosphate is 26.2 2E+02 0.0044 19.1 4.6 14 112-125 63-76 (151)
316 PF08288 PIGA: PIGA (GPI ancho 26.1 1.6E+02 0.0034 17.8 3.9 51 73-123 11-61 (90)
317 PRK00042 tpiA triosephosphate 26.1 2.3E+02 0.0049 20.4 5.1 38 88-125 173-215 (250)
318 TIGR03819 heli_sec_ATPase heli 26.0 2.1E+02 0.0046 21.5 5.2 33 98-130 165-197 (340)
319 PF15414 DUF4621: Protein of u 25.8 1.3E+02 0.0028 21.0 3.7 35 26-60 132-167 (329)
320 PRK09875 putative hydrolase; P 25.7 2.4E+02 0.0052 20.8 5.3 37 94-130 30-67 (292)
321 PLN02538 2,3-bisphosphoglycera 25.7 1.2E+02 0.0026 24.7 3.9 54 77-133 126-182 (558)
322 PHA02754 hypothetical protein; 25.6 1.3E+02 0.0028 16.6 3.3 24 94-118 13-36 (67)
323 PF06110 DUF953: Eukaryotic pr 25.4 42 0.00091 21.3 1.2 10 112-121 58-67 (119)
324 PRK11608 pspF phage shock prot 25.4 2.3E+02 0.005 21.0 5.3 34 95-128 13-46 (326)
325 PF13607 Succ_CoA_lig: Succiny 25.2 1E+02 0.0023 19.9 3.0 65 50-122 26-91 (138)
326 TIGR00112 proC pyrroline-5-car 25.2 1.2E+02 0.0027 21.4 3.7 29 96-125 55-83 (245)
327 TIGR00644 recJ single-stranded 25.1 1.3E+02 0.0028 24.2 4.0 30 91-120 34-63 (539)
328 COG0005 Pnp Purine nucleoside 25.1 1.8E+02 0.004 21.2 4.4 21 43-63 87-107 (262)
329 cd01425 RPS2 Ribosomal protein 25.0 1.6E+02 0.0034 20.1 4.0 29 92-120 37-65 (193)
330 cd03320 OSBS o-Succinylbenzoat 24.9 1.1E+02 0.0023 21.9 3.3 31 97-127 213-245 (263)
331 TIGR01133 murG undecaprenyldip 24.8 2.7E+02 0.006 20.1 9.2 73 45-122 22-100 (348)
332 PTZ00286 6-phospho-1-fructokin 24.8 3.6E+02 0.0078 21.5 8.1 98 31-129 152-267 (459)
333 TIGR03586 PseI pseudaminic aci 24.7 3.1E+02 0.0067 20.7 7.0 29 93-122 145-173 (327)
334 TIGR03848 MSMEG_4193 probable 24.5 2.3E+02 0.0049 19.2 4.8 35 92-126 118-159 (204)
335 PF00288 GHMP_kinases_N: GHMP 24.3 81 0.0018 17.1 2.1 15 120-134 12-26 (67)
336 PF00834 Ribul_P_3_epim: Ribul 24.3 81 0.0018 21.8 2.5 21 72-92 20-40 (201)
337 KOG3153|consensus 24.2 2.2E+02 0.0049 20.4 4.6 46 72-124 89-138 (250)
338 TIGR01011 rpsB_bact ribosomal 24.2 1.6E+02 0.0035 20.8 4.0 29 92-120 43-71 (225)
339 TIGR01460 HAD-SF-IIA Haloacid 24.1 1.3E+02 0.0029 21.0 3.6 37 97-134 16-52 (236)
340 cd07940 DRE_TIM_IPMS 2-isoprop 24.0 2.8E+02 0.006 19.9 8.1 78 46-125 122-203 (268)
341 PF04898 Glu_syn_central: Glut 24.0 3E+02 0.0065 20.4 5.4 49 76-125 117-169 (287)
342 KOG0207|consensus 23.9 3.5E+02 0.0076 23.7 6.3 29 102-131 776-804 (951)
343 PLN02282 phosphoglycerate kina 23.8 1.7E+02 0.0038 22.8 4.4 43 81-123 26-68 (401)
344 PF09289 FOLN: Follistatin/Ost 23.8 22 0.00048 15.5 -0.2 7 116-122 4-10 (22)
345 TIGR00753 undec_PP_bacA undeca 23.8 52 0.0011 23.8 1.5 15 120-134 160-174 (255)
346 PRK03906 mannonate dehydratase 23.7 3.5E+02 0.0076 20.9 7.2 80 34-114 7-99 (385)
347 PRK14040 oxaloacetate decarbox 23.6 2.6E+02 0.0056 23.0 5.5 44 74-121 165-208 (593)
348 PRK05597 molybdopterin biosynt 23.6 95 0.0021 23.5 2.9 20 109-129 312-331 (355)
349 PRK08903 DnaA regulatory inact 23.6 2.5E+02 0.0054 19.2 5.1 22 109-130 40-61 (227)
350 PRK14017 galactonate dehydrata 23.6 1.2E+02 0.0026 23.0 3.5 31 97-127 265-296 (382)
351 PF14417 MEDS: MEDS: MEthanoge 23.6 1.7E+02 0.0036 19.8 4.0 29 92-120 28-56 (191)
352 TIGR00695 uxuA mannonate dehyd 23.5 3.6E+02 0.0078 21.0 7.5 81 34-115 7-100 (394)
353 CHL00067 rps2 ribosomal protei 23.3 1.7E+02 0.0037 20.7 4.0 29 92-120 49-77 (230)
354 PRK12311 rpsB 30S ribosomal pr 23.3 1.6E+02 0.0035 22.2 4.0 29 92-120 40-68 (326)
355 PF01715 IPPT: IPP transferase 23.2 1.8E+02 0.0039 20.9 4.2 39 74-112 18-57 (253)
356 PRK06555 pyrophosphate--fructo 23.1 3.7E+02 0.008 21.0 8.5 84 45-129 106-203 (403)
357 PRK05692 hydroxymethylglutaryl 23.1 3.1E+02 0.0067 20.1 5.8 51 75-128 166-218 (287)
358 PRK12554 undecaprenyl pyrophos 23.0 55 0.0012 24.0 1.5 15 120-134 166-180 (276)
359 PRK06830 diphosphate--fructose 22.8 3.9E+02 0.0084 21.2 7.6 97 31-128 148-262 (443)
360 TIGR01118 lacA galactose-6-pho 22.7 2.1E+02 0.0045 18.8 4.0 13 112-125 58-70 (141)
361 cd03322 rpsA The starvation se 22.6 1.2E+02 0.0025 23.0 3.3 31 97-127 251-284 (361)
362 TIGR01839 PHA_synth_II poly(R) 22.6 4.4E+02 0.0094 21.7 6.6 49 73-121 243-299 (560)
363 COG0052 RpsB Ribosomal protein 22.4 1.5E+02 0.0033 21.5 3.5 28 92-119 45-72 (252)
364 KOG1208|consensus 22.3 1.2E+02 0.0026 22.6 3.2 72 45-124 53-126 (314)
365 cd06135 Orn DEDDh 3'-5' exonuc 22.2 1.3E+02 0.0028 20.0 3.2 35 91-125 73-107 (173)
366 PF05562 WCOR413: Cold acclima 22.2 1.8E+02 0.004 20.0 3.7 26 109-134 29-59 (187)
367 PF12146 Hydrolase_4: Putative 22.1 1.7E+02 0.0037 16.7 4.1 32 95-126 27-58 (79)
368 cd03325 D-galactonate_dehydrat 22.1 1.3E+02 0.0028 22.6 3.4 29 97-125 264-293 (352)
369 PF00216 Bac_DNA_binding: Bact 22.1 1.5E+02 0.0032 17.1 3.1 27 91-117 19-45 (90)
370 PTZ00142 6-phosphogluconate de 22.0 3.2E+02 0.007 21.7 5.6 68 53-120 95-174 (470)
371 PF10652 DUF2480: Protein of u 22.0 1.2E+02 0.0027 20.4 2.8 42 80-121 28-72 (167)
372 cd08186 Fe-ADH8 Iron-containin 22.0 3.2E+02 0.007 20.8 5.6 73 32-106 3-82 (383)
373 PF14538 Raptor_N: Raptor N-te 21.9 1.4E+02 0.003 19.8 3.2 33 91-124 71-104 (154)
374 PRK13462 acid phosphatase; Pro 21.9 2.2E+02 0.0047 19.5 4.3 35 91-125 117-153 (203)
375 cd06543 GH18_PF-ChiA-like PF-C 21.8 3.4E+02 0.0073 20.0 7.0 66 42-108 58-134 (294)
376 cd01292 metallo-dependent_hydr 21.8 1.5E+02 0.0032 20.3 3.5 28 93-123 131-158 (275)
377 cd08551 Fe-ADH iron-containing 21.7 3.4E+02 0.0074 20.4 5.6 73 32-106 3-78 (370)
378 smart00274 FOLN Follistatin-N- 21.6 62 0.0013 14.6 1.0 7 116-122 5-11 (26)
379 PRK14117 gpmA phosphoglyceromu 21.6 2.1E+02 0.0045 20.0 4.2 36 91-126 150-189 (230)
380 PRK14119 gpmA phosphoglyceromu 21.6 1.9E+02 0.0042 20.1 4.0 35 91-125 150-188 (228)
381 PRK08621 galactose-6-phosphate 21.4 2.2E+02 0.0048 18.6 4.0 13 112-125 58-70 (142)
382 cd08190 HOT Hydroxyacid-oxoaci 21.4 3E+02 0.0065 21.3 5.3 73 32-106 3-78 (414)
383 PRK00281 undecaprenyl pyrophos 21.4 64 0.0014 23.5 1.6 15 120-134 164-178 (268)
384 PRK05693 short chain dehydroge 21.3 3E+02 0.0065 19.3 5.8 63 45-120 19-81 (274)
385 PRK00002 aroB 3-dehydroquinate 21.2 3.7E+02 0.0079 20.3 6.9 76 32-107 11-88 (358)
386 PRK00726 murG undecaprenyldiph 21.2 3.4E+02 0.0074 19.9 9.2 73 45-122 23-101 (357)
387 PF05938 Self-incomp_S1: Plant 21.1 71 0.0015 19.4 1.6 14 109-122 10-23 (110)
388 KOG1468|consensus 21.1 1.2E+02 0.0027 22.5 2.9 23 100-122 142-166 (354)
389 cd04261 AAK_AKii-LysC-BS AAK_A 21.1 2.3E+02 0.005 19.9 4.4 28 94-121 14-42 (239)
390 PF00106 adh_short: short chai 21.1 2.3E+02 0.005 17.9 6.2 73 45-123 18-92 (167)
391 TIGR00856 pyrC_dimer dihydroor 21.1 1.3E+02 0.0029 22.5 3.3 22 100-121 117-138 (341)
392 COG1454 EutG Alcohol dehydroge 21.1 3.7E+02 0.0081 20.8 5.6 76 30-107 7-85 (377)
393 cd00568 TPP_enzymes Thiamine p 21.1 1.5E+02 0.0032 19.1 3.2 22 98-119 146-167 (168)
394 cd02015 TPP_AHAS Thiamine pyro 21.0 1.5E+02 0.0032 19.9 3.2 23 98-120 151-173 (186)
395 cd07948 DRE_TIM_HCS Saccharomy 20.9 3.3E+02 0.0072 19.6 6.5 80 47-130 121-205 (262)
396 TIGR00873 gnd 6-phosphoglucona 20.9 3.5E+02 0.0075 21.5 5.6 68 53-120 92-171 (467)
397 COG5329 Phosphoinositide polyp 20.9 4E+02 0.0087 21.9 5.9 84 45-128 300-407 (570)
398 PRK02090 phosphoadenosine phos 20.8 1.2E+02 0.0026 21.5 2.9 27 99-125 27-54 (241)
399 PF10114 PocR: Sensory domain 20.6 1.1E+02 0.0023 20.1 2.5 20 104-123 66-85 (173)
400 COG0126 Pgk 3-phosphoglycerate 20.6 1.8E+02 0.004 22.6 3.9 41 81-122 23-63 (395)
401 COG0036 Rpe Pentose-5-phosphat 20.4 1.5E+02 0.0033 21.0 3.2 20 70-89 22-41 (220)
402 COG0653 SecA Preprotein transl 20.4 1.5E+02 0.0033 25.4 3.6 25 92-116 410-434 (822)
403 KOG1196|consensus 20.3 3.9E+02 0.0085 20.3 5.5 85 32-116 225-310 (343)
404 cd00763 Bacterial_PFK Phosphof 20.1 3.8E+02 0.0083 20.0 8.6 41 45-88 86-127 (317)
405 PF14399 Transpep_BrtH: NlpC/p 20.1 1.6E+02 0.0035 21.3 3.5 39 74-121 60-98 (317)
406 COG3473 Maleate cis-trans isom 20.1 3.4E+02 0.0073 19.4 5.3 77 44-121 110-190 (238)
407 PF07521 RMMBL: RNA-metabolisi 20.0 1.1E+02 0.0024 15.3 1.9 19 98-117 21-39 (43)
No 1
>PRK12361 hypothetical protein; Provisional
Probab=99.97 E-value=1e-30 Score=203.02 Aligned_cols=130 Identities=25% Similarity=0.467 Sum_probs=113.1
Q ss_pred Ccceeeecchh----HHHHHHHHhcCCCccccccCcEEEeCCCCcccHHHHHhcCCCEEEEcccCcccccccChhhhhhc
Q psy7473 1 MFARVTFYPSL----FYNVFMEKVTSRRWYDRIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKV 76 (136)
Q Consensus 1 ~~~~~~~~p~~----~~~~~~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~ 76 (136)
++|+|+|+||+ .++++..+..+.+++++|.|+||+|+.+.+.+.+.|++.||++|||++.+.+. .+......
T Consensus 66 ~~~~~l~~P~l~~~~~~~~~~r~~~~~~~~~~I~~~l~lG~~~~a~d~~~L~~~gI~~Vldlt~E~~~----~~~~~~~~ 141 (547)
T PRK12361 66 WYIRWVFIPFLLGTRLYNAWARKRDSVPAIQKIDENLYLGCRLFPADLEKLKSNKITAILDVTAEFDG----LDWSLTEE 141 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCcceEEcCcEEECCCCCcccHHHHHHcCCCEEEEccccccc----cccccccc
Confidence 46899999999 55666666778899999999999999999999999999999999999976541 11122346
Q ss_pred CCeEEEeeCCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCCCCChHHHHHHHHhhc
Q psy7473 77 GVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLMK 135 (136)
Q Consensus 77 ~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~ 135 (136)
+++|+++|+.|.. .|..+++++++++|++..++|++|||||.+|+|||+++++||||+
T Consensus 142 ~i~yl~iPi~D~~-~p~~~~l~~a~~~i~~~~~~~~~VlVHC~~G~sRSa~vv~ayLm~ 199 (547)
T PRK12361 142 DIDYLNIPILDHS-VPTLAQLNQAINWIHRQVRANKSVVVHCALGRGRSVLVLAAYLLC 199 (547)
T ss_pred CceEEEeecCCCC-CCcHHHHHHHHHHHHHHHHCCCeEEEECCCCCCcHHHHHHHHHHH
Confidence 7999999999986 678899999999999999999999999999999999999999995
No 2
>KOG1719|consensus
Probab=99.97 E-value=3e-30 Score=166.15 Aligned_cols=133 Identities=53% Similarity=0.926 Sum_probs=120.3
Q ss_pred CcceeeecchhHHHHHHHHhcCCCccccccCcEEEeCCCCcc-cHHHHHhcCCCEEEEcccCcccccccChhhhhhcCCe
Q psy7473 1 MFARVTFYPSLFYNVFMEKVTSRRWYDRIDENIILGALPFKR-LTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVE 79 (136)
Q Consensus 1 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~l~~g~~~~~~-~~~~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~i~ 79 (136)
|+||+.|+|+|+||+++.+-+.++|+ ++.+.+.+|..|..+ +...+++.|+..|+.++++.|...+ ...|...|++
T Consensus 1 ~~ar~~fyptllynvv~~k~s~~~wy-~~~~~v~~~~~~FrS~~~~~i~ke~v~gvv~~ne~yE~~a~--s~~wk~~giE 77 (183)
T KOG1719|consen 1 MGARVLFYPTLLYNVVREKASAFRWY-RIDEFVILGAMPFRSMDVPLIKKENVGGVVTLNEPYELLAP--SNLWKNYGIE 77 (183)
T ss_pred CCceeeecHHHHHHHHHHHHhhhcee-eecceEEEeecccccccchHHHhcCCCeEEEeCCchhhhhh--hHHHHhccce
Confidence 78999999999999999999999998 888899999998775 4566777999999999998886333 2378899999
Q ss_pred EEEeeCCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCCCCChHHHHHHHHhhcC
Q psy7473 80 FLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLMKC 136 (136)
Q Consensus 80 ~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~ 136 (136)
++.+|..|....|+.+.+.++++||.+....|+.|+|||++|++||+|+++||||..
T Consensus 78 ~L~i~T~D~~~~Ps~~~i~~aVeFi~k~asLGktvYVHCKAGRtRSaTvV~cYLmq~ 134 (183)
T KOG1719|consen 78 FLVIPTRDYTGAPSLENIQKAVEFIHKNASLGKTVYVHCKAGRTRSATVVACYLMQH 134 (183)
T ss_pred eEEeccccccCCCCHHHHHHHHHHHHhccccCCeEEEEecCCCccchhhhhhhhhhh
Confidence 999999999999999999999999999999999999999999999999999999963
No 3
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.96 E-value=1.6e-29 Score=164.80 Aligned_cols=102 Identities=31% Similarity=0.438 Sum_probs=93.0
Q ss_pred cccccCcEEEeCCCCcccHHHHHhcCCCEEEEcccCcccccccChhhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHH
Q psy7473 26 YDRIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQ 105 (136)
Q Consensus 26 ~~~i~~~l~~g~~~~~~~~~~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~ 105 (136)
|++|.|+||+|+.+.+.+.+.+++.||++|||++.+.+. ....+++|+++|+.|....+..+.+++++++|+
T Consensus 1 ~~~I~~~l~~G~~~~~~~~~~l~~~gi~~Vi~l~~~~~~--------~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~ 72 (138)
T smart00195 1 PSEILPHLYLGSYSSALNLALLKKLGITHVINVTNEVPN--------LNKKGFTYLGVPILDNTETKISPYFPEAVEFIE 72 (138)
T ss_pred CcEEeCCeEECChhHcCCHHHHHHcCCCEEEEccCCCCC--------CCCCCCEEEEEECCCCCCCChHHHHHHHHHHHH
Confidence 579999999999999999999999999999999987541 125789999999999766788899999999999
Q ss_pred HHHHcCCeEEEEcCCCCChHHHHHHHHhhc
Q psy7473 106 RISKTGGTVYVHCKAGRTRSATLVGCYLMK 135 (136)
Q Consensus 106 ~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~ 135 (136)
+..++|++|||||.+|+||||++++||||+
T Consensus 73 ~~~~~~~~VlVHC~~G~~RS~~v~~~yl~~ 102 (138)
T smart00195 73 DAEKKGGKVLVHCQAGVSRSATLIIAYLMK 102 (138)
T ss_pred HHhcCCCeEEEECCCCCchHHHHHHHHHHH
Confidence 999999999999999999999999999996
No 4
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.95 E-value=8.4e-28 Score=156.56 Aligned_cols=104 Identities=30% Similarity=0.435 Sum_probs=94.5
Q ss_pred cccccCcEEEeCCCCcccHHHHHhcCCCEEEEcccCcccccccChhhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHH
Q psy7473 26 YDRIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQ 105 (136)
Q Consensus 26 ~~~i~~~l~~g~~~~~~~~~~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~ 105 (136)
+++|.|+||+|+.+.+.+.+.|++.||++|||++.+.+. +.....+++|+++|+.|....+....++.++++|+
T Consensus 2 ~~~i~~~l~~g~~~~~~d~~~L~~~gi~~VI~l~~~~~~------~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~ 75 (139)
T cd00127 2 LSEITPGLYLGSYPAASDKELLKKLGITHVLNVAKEVPN------ENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFID 75 (139)
T ss_pred cCEEcCCeEECChhHhcCHHHHHHcCCCEEEEcccCCCC------cccCCCCceEEEEEceeCCCCChHHHHHHHHHHHH
Confidence 578999999999999999999999999999999988651 33456899999999999886777889999999999
Q ss_pred HHHHcCCeEEEEcCCCCChHHHHHHHHhhc
Q psy7473 106 RISKTGGTVYVHCKAGRTRSATLVGCYLMK 135 (136)
Q Consensus 106 ~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~ 135 (136)
...+++++|+|||.+|.|||++++++|||+
T Consensus 76 ~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~ 105 (139)
T cd00127 76 DAREKGGKVLVHCLAGVSRSATLVIAYLMK 105 (139)
T ss_pred HHHhcCCcEEEECCCCCchhHHHHHHHHHH
Confidence 999999999999999999999999999986
No 5
>KOG1717|consensus
Probab=99.94 E-value=1.1e-26 Score=161.49 Aligned_cols=108 Identities=22% Similarity=0.233 Sum_probs=96.9
Q ss_pred CCccccccCcEEEeCCCCcccHHHHHhcCCCEEEEcccCcccccccChhhhhhcCCeEEEeeCCCCCCCchHHHHHHHHH
Q psy7473 23 RRWYDRIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVD 102 (136)
Q Consensus 23 ~~~~~~i~~~l~~g~~~~~~~~~~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~ 102 (136)
-.+|.+|.|+||+|+..+..+.+.|+++||++|||++...+. ..-....+.|..+|+.|.-..+....|.+++.
T Consensus 169 a~FPV~ilp~LYLg~a~ds~NldvLkk~gI~yviNVTpnlpn------~fe~~g~f~YkqipisDh~Sqnls~ffpEAIs 242 (343)
T KOG1717|consen 169 ASFPVEILPNLYLGCAKDSTNLDVLKKYGIKYVINVTPNLPN------NFENNGEFIYKQIPISDHASQNLSQFFPEAIS 242 (343)
T ss_pred cCcchhhccchhcccccccccHHHHHhcCceEEEecCCCCcc------hhhcCCceeEEeeeccchhhhhhhhhhHHHHH
Confidence 346899999999999999999999999999999999987642 11124567899999999988999999999999
Q ss_pred HHHHHHHcCCeEEEEcCCCCChHHHHHHHHhhcC
Q psy7473 103 FIQRISKTGGTVYVHCKAGRTRSATLVGCYLMKC 136 (136)
Q Consensus 103 ~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~ 136 (136)
||++++.++..|||||-+|++||+|+++||||++
T Consensus 243 fIdeArsk~cgvLVHClaGISRSvTvtvaYLMqk 276 (343)
T KOG1717|consen 243 FIDEARSKNCGVLVHCLAGISRSVTVTVAYLMQK 276 (343)
T ss_pred HHHHhhccCCcEEEeeeccccchhHHHHHHHHHH
Confidence 9999999999999999999999999999999974
No 6
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.94 E-value=1.6e-26 Score=149.72 Aligned_cols=97 Identities=31% Similarity=0.552 Sum_probs=88.2
Q ss_pred EEEeCCCCcccHHHHHhcCCCEEEEcccCcccccccChhhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHHHHcCC
Q psy7473 33 IILGALPFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGG 112 (136)
Q Consensus 33 l~~g~~~~~~~~~~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~~~ 112 (136)
||+|+.+.+. ...+++.||++|||++.+.+. .......+++|+++|+.|....+..+.+++++++|+++.++|+
T Consensus 1 lylG~~~~a~-~~~l~~~~I~~Vin~~~~~~~-----~~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~ 74 (133)
T PF00782_consen 1 LYLGSYPAAS-IAFLKNLGITHVINLQEECPN-----PYFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGG 74 (133)
T ss_dssp EEEEEHHHHC-HHHHHHTTEEEEEECSSSSST-----SHHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTS
T ss_pred CEEeCHHHHh-HHHHHHCCCCEEEEccCCCcC-----chhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccc
Confidence 7999999999 999999999999999998652 1345678899999999996668899999999999999999999
Q ss_pred eEEEEcCCCCChHHHHHHHHhhc
Q psy7473 113 TVYVHCKAGRTRSATLVGCYLMK 135 (136)
Q Consensus 113 ~VlVHC~~G~~RS~~v~~ayLm~ 135 (136)
+|||||.+|+|||+++++||||+
T Consensus 75 ~VlVHC~~G~~RS~~v~~ayLm~ 97 (133)
T PF00782_consen 75 KVLVHCKAGLSRSGAVAAAYLMK 97 (133)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred eeEEEeCCCcccchHHHHHHHHH
Confidence 99999999999999999999996
No 7
>KOG1718|consensus
Probab=99.93 E-value=2.2e-25 Score=145.67 Aligned_cols=104 Identities=21% Similarity=0.290 Sum_probs=94.3
Q ss_pred ccccccCcEEEeCCCCcccHHHHHhcCCCEEEEcccCcccccccChhhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHH
Q psy7473 25 WYDRIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFI 104 (136)
Q Consensus 25 ~~~~i~~~l~~g~~~~~~~~~~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i 104 (136)
-+++|+++||+++--.+.+...+++.+|++|||.+.+.+. ..-.+++|..+|+.|.+...+.++|+.+.+.|
T Consensus 16 ~~SqIt~sLfl~~GvaA~~k~~l~~~~It~IiNat~E~pn--------~~l~~~qy~kv~~~D~p~~~l~~hfD~vAD~I 87 (198)
T KOG1718|consen 16 GMSQITPSLFLSNGVAANDKLLLKKRKITCIINATTEVPN--------TSLPDIQYMKVPLEDTPQARLYDHFDPVADKI 87 (198)
T ss_pred chhhcCcceeEeccccccCHHHHHhcCceEEEEcccCCCC--------ccCCCceeEEEEcccCCcchhhhhhhHHHHHH
Confidence 3899999999997767888889999999999999988641 12357899999999999999999999999999
Q ss_pred HHHHHcCCeEEEEcCCCCChHHHHHHHHhhcC
Q psy7473 105 QRISKTGGTVYVHCKAGRTRSATLVGCYLMKC 136 (136)
Q Consensus 105 ~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~ 136 (136)
+.....||++||||.+|+|||+++|.|||||+
T Consensus 88 ~~v~~~gG~TLvHC~AGVSRSAsLClAYLmK~ 119 (198)
T KOG1718|consen 88 HSVIMRGGKTLVHCVAGVSRSASLCLAYLMKY 119 (198)
T ss_pred HHHHhcCCcEEEEEccccchhHHHHHHHHHHH
Confidence 99999999999999999999999999999985
No 8
>KOG1716|consensus
Probab=99.91 E-value=6.4e-24 Score=153.26 Aligned_cols=107 Identities=28% Similarity=0.405 Sum_probs=95.7
Q ss_pred ccccccCcEEEeCCCCcccHHHHHhcCCCEEEEcccCcccccccChhhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHH
Q psy7473 25 WYDRIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFI 104 (136)
Q Consensus 25 ~~~~i~~~l~~g~~~~~~~~~~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i 104 (136)
-+..|.|++|+|+...+.+...+++.||++|+|+....+. .......+++|+++|+.|.+..++..+++++++||
T Consensus 74 ~~~~i~p~l~lg~~~~~~~~~~l~~~~it~vln~~~~~~~-----~~~~~~~~~~y~~i~~~D~~~~~i~~~~~~~~~fI 148 (285)
T KOG1716|consen 74 PIVEILPNLYLGSQGVASDPDLLKKLGITHVLNVSSSCPN-----PRFLKEQGIKYLRIPVEDNPSTDILQHFPEAISFI 148 (285)
T ss_pred CceeecCCceecCcccccchhhHHHcCCCEEEEecccCCc-----cccccccCceEEeccccCCccccHHHHHHHHHHHH
Confidence 4788999999999999999999999999999999988652 11122338999999999999899999999999999
Q ss_pred HHHHHcCCeEEEEcCCCCChHHHHHHHHhhcC
Q psy7473 105 QRISKTGGTVYVHCKAGRTRSATLVGCYLMKC 136 (136)
Q Consensus 105 ~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~ 136 (136)
+.+...|++|||||.+|+|||+++++||||++
T Consensus 149 ~~a~~~~~~vlVHC~~GvSRSat~viAYlM~~ 180 (285)
T KOG1716|consen 149 EKAREKGGKVLVHCQAGVSRSATLVIAYLMKY 180 (285)
T ss_pred HHHHhCCCeEEEEcCCccchhHHHHHHHHHHH
Confidence 99999999999999999999999999999974
No 9
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.91 E-value=2.9e-23 Score=139.03 Aligned_cols=107 Identities=21% Similarity=0.212 Sum_probs=90.7
Q ss_pred CccccccCcEEEeCCCCcccH----HHHHhcCCCEEEEcccCcccccccChhhhhhcCCeEEEeeCCCCCCCchHHHHHH
Q psy7473 24 RWYDRIDENIILGALPFKRLT----NKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLER 99 (136)
Q Consensus 24 ~~~~~i~~~l~~g~~~~~~~~----~~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~ 99 (136)
+-.+.++.++..-..|..... +.|+++||++|||++.+.. ..+.+...|++++++|+.|.. +|..+.+.+
T Consensus 9 ~~~~~~~~r~~~~~~P~~~~~~~~l~~L~~~gI~~Iv~l~~~~~-----~~~~~~~~gi~~~~~p~~D~~-~P~~~~i~~ 82 (166)
T PTZ00242 9 RQIEYVLFKFLILDAPSPSNLPLYIKELQRYNVTHLVRVCGPTY-----DAELLEKNGIEVHDWPFDDGA-PPPKAVIDN 82 (166)
T ss_pred cceeeeceEEEEecCCCcccHHHHHHHHHhCCCeEEEecCCCCC-----CHHHHHHCCCEEEecCCCCCC-CCCHHHHHH
Confidence 346778889999999888444 7789999999999987533 245677789999999999976 788888999
Q ss_pred HHHHHHHHHHc----CCeEEEEcCCCCChHHHHHHHHhhcC
Q psy7473 100 GVDFIQRISKT----GGTVYVHCKAGRTRSATLVGCYLMKC 136 (136)
Q Consensus 100 ~~~~i~~~~~~----~~~VlVHC~~G~~RS~~v~~ayLm~~ 136 (136)
+++++++.... |++|+|||.+|+||||+++++|||++
T Consensus 83 ~~~~i~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~ 123 (166)
T PTZ00242 83 WLRLLDQEFAKQSTPPETIAVHCVAGLGRAPILVALALVEY 123 (166)
T ss_pred HHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 99999987754 99999999999999999999999963
No 10
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.87 E-value=1.9e-21 Score=135.03 Aligned_cols=104 Identities=23% Similarity=0.316 Sum_probs=88.1
Q ss_pred cccccC---cEEEeCCCCcccH----HHHHhcCCCEEEEcccCcccccccChhhhhhcCCeEEEeeCCCCCCCchHHHHH
Q psy7473 26 YDRIDE---NIILGALPFKRLT----NKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLE 98 (136)
Q Consensus 26 ~~~i~~---~l~~g~~~~~~~~----~~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~ 98 (136)
+.+|.- ++.+-..|..... +.|++.||+.||+++++.. ..+.++..|++++++|++|.. .|..+.++
T Consensus 84 ~~~ie~~~~rfLi~~~P~~~~~~~yl~eLk~~gV~~lVrlcE~~Y-----d~~~~~~~GI~~~~lpipDg~-aPs~~~i~ 157 (241)
T PTZ00393 84 PTKIEHGKIKILILDAPTNDLLPLYIKEMKNYNVTDLVRTCERTY-----NDGEITSAGINVHELIFPDGD-APTVDIVS 157 (241)
T ss_pred chhhccCceeEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCCCC-----CHHHHHHcCCeEEEeecCCCC-CCCHHHHH
Confidence 455543 4667777776444 7799999999999987643 366778899999999999987 88888999
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCCChHHHHHHHHhhc
Q psy7473 99 RGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLMK 135 (136)
Q Consensus 99 ~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~ 135 (136)
++++++++..++|++|+|||.+|+||||+++++|||.
T Consensus 158 ~~l~~i~~~l~~g~~VaVHC~AGlGRTGtl~AayLI~ 194 (241)
T PTZ00393 158 NWLTIVNNVIKNNRAVAVHCVAGLGRAPVLASIVLIE 194 (241)
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999986
No 11
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.87 E-value=1.1e-21 Score=129.26 Aligned_cols=104 Identities=23% Similarity=0.291 Sum_probs=74.3
Q ss_pred CcEEEeCCCC----------cccHHHHHhcCCCEEEEcccCccc---ccccChhhhhhcCCeEEEeeCCCCCCCchHHHH
Q psy7473 31 ENIILGALPF----------KRLTNKLLEENVKGVVSMNEDYEL---YFANGREEWNKVGVEFLQLSTRDIFDTPDQDKL 97 (136)
Q Consensus 31 ~~l~~g~~~~----------~~~~~~l~~~gi~~Vi~l~~~~~~---~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~ 97 (136)
..|.+...|- ..|.+.|++.|++.||.+++..|. ..+...+.++..|+.++|+|+.|.. .|..+..
T Consensus 41 ~~Lglt~~PG~k~~d~~RdL~~DL~~Lk~~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~-aPd~~~~ 119 (168)
T PF05706_consen 41 GFLGLTFLPGCKFKDWRRDLQADLERLKDWGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGS-APDFAAA 119 (168)
T ss_dssp SEEEEES-TT-EETTEEB-HHHHHHHHHHTT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS----HHHH
T ss_pred ceeeeecCCCcccccccchHHHHHHHHHHCCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCC-CCCHHHH
Confidence 4577777776 355668999999999999999887 5556677888999999999999998 5666677
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCCCCChHHHHHHHHhhc
Q psy7473 98 ERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLMK 135 (136)
Q Consensus 98 ~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~ 135 (136)
.++++.+...+++|++|+|||.+|.||||++++|+|+.
T Consensus 120 ~~i~~eL~~~L~~g~~V~vHC~GGlGRtGlvAAcLLl~ 157 (168)
T PF05706_consen 120 WQILEELAARLENGRKVLVHCRGGLGRTGLVAACLLLE 157 (168)
T ss_dssp HHHHHHHHHHHHTT--EEEE-SSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 78888899999999999999999999999999999974
No 12
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=99.83 E-value=2.8e-20 Score=124.22 Aligned_cols=104 Identities=15% Similarity=0.299 Sum_probs=67.4
Q ss_pred cccccCcEEEeCCCCcccHHHHHhcCCCEEEEcccCcccccccChhhhhhcCCeEEEeeCCCCCC---CchHHHHHHHHH
Q psy7473 26 YDRIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFD---TPDQDKLERGVD 102 (136)
Q Consensus 26 ~~~i~~~l~~g~~~~~~~~~~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~i~~~~~p~~D~~~---~~~~~~~~~~~~ 102 (136)
+..|.++||.|++|.+.+...|+++|+++||+|+.+... .......+..|++++++++..... +...+.+.++++
T Consensus 7 F~~V~~~vYRS~~P~~~n~~fL~~L~LKTII~L~~e~~~--~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~ 84 (164)
T PF03162_consen 7 FGMVEPGVYRSAQPTPANFPFLERLGLKTIINLRPEPPS--QDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALE 84 (164)
T ss_dssp -EEEETTEEEESS--HHHHHHHHHHT-SEEEE--SS-----HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHH
T ss_pred ccCCCCCccCCCCCChhhHHHHHHCCCceEEEecCCCCC--HHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHH
Confidence 788999999999999999999999999999999987542 112234578999999999987652 245667777777
Q ss_pred HHHHHHHcCCeEEEEcCCCCChHHHHHHHHh
Q psy7473 103 FIQRISKTGGTVYVHCKAGRTRSATLVGCYL 133 (136)
Q Consensus 103 ~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL 133 (136)
.|.+. .+.||||||..|.+|||+|++||=
T Consensus 85 ~ild~--~n~PvLiHC~~G~~rTG~vvg~lR 113 (164)
T PF03162_consen 85 IILDP--RNYPVLIHCNHGKDRTGLVVGCLR 113 (164)
T ss_dssp HHH-G--GG-SEEEE-SSSSSHHHHHHHHHH
T ss_pred HHhCC--CCCCEEEEeCCCCcchhhHHHHHH
Confidence 66443 347999999999999999999984
No 13
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.79 E-value=2.2e-18 Score=111.91 Aligned_cols=102 Identities=19% Similarity=0.163 Sum_probs=78.7
Q ss_pred ccccCcEEEeCCCCcccHHHHHhcCCCEEEEcccCccc-ccccCh---hhhhhcCCeEEEeeCCCCCCCchHHHHHHHHH
Q psy7473 27 DRIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYEL-YFANGR---EEWNKVGVEFLQLSTRDIFDTPDQDKLERGVD 102 (136)
Q Consensus 27 ~~i~~~l~~g~~~~~~~~~~l~~~gi~~Vi~l~~~~~~-~~~~~~---~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~ 102 (136)
.+|++++|+++.+...+.+.|+++||++|||++++.|. ..+... +.....|++|+++|+.... ...+.+..+.+
T Consensus 3 ~~i~~~~~~s~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~~--~~~~~v~~f~~ 80 (135)
T TIGR01244 3 RKLTEHLYVSPQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAGD--ITPDDVETFRA 80 (135)
T ss_pred eEcCCCeeEcCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCCC--CCHHHHHHHHH
Confidence 57899999999999999999999999999999987664 111111 1224579999999988643 45556666666
Q ss_pred HHHHHHHcCCeEEEEcCCCCChHHHHHHHHhh
Q psy7473 103 FIQRISKTGGTVYVHCKAGRTRSATLVGCYLM 134 (136)
Q Consensus 103 ~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm 134 (136)
+++ +..+|||+||++|. ||+++.+.++.
T Consensus 81 ~~~---~~~~pvL~HC~sG~-Rt~~l~al~~~ 108 (135)
T TIGR01244 81 AIG---AAEGPVLAYCRSGT-RSSLLWGFRQA 108 (135)
T ss_pred HHH---hCCCCEEEEcCCCh-HHHHHHHHHHH
Confidence 665 34689999999999 99998876654
No 14
>KOG1720|consensus
Probab=99.79 E-value=8.8e-19 Score=118.51 Aligned_cols=83 Identities=31% Similarity=0.551 Sum_probs=75.5
Q ss_pred HHHhcCCCEEEEcccCcccccccChhhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCCCCChH
Q psy7473 46 KLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRS 125 (136)
Q Consensus 46 ~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS 125 (136)
.+++.++++++.+..... +.+.+...|+.++++|+.|.. .|..+.+.++++.++.+.+ +++|.|||++|.|||
T Consensus 89 ~~~~~~v~s~vrln~~~y-----d~~~f~~~Gi~h~~l~f~Dg~-tP~~~~v~~fv~i~e~~~~-~g~iaVHCkaGlGRT 161 (225)
T KOG1720|consen 89 YFKNNNVTSIVRLNKRLY-----DAKRFTDAGIDHHDLFFADGS-TPTDAIVKEFVKIVENAEK-GGKIAVHCKAGLGRT 161 (225)
T ss_pred HhhhcccceEEEcCCCCC-----ChHHhcccCceeeeeecCCCC-CCCHHHHHHHHHHHHHHHh-cCeEEEEeccCCCch
Confidence 366789999999987743 467788999999999999998 8999999999999999988 999999999999999
Q ss_pred HHHHHHHhhc
Q psy7473 126 ATLVGCYLMK 135 (136)
Q Consensus 126 ~~v~~ayLm~ 135 (136)
|+++||||||
T Consensus 162 G~liAc~lmy 171 (225)
T KOG1720|consen 162 GTLIACYLMY 171 (225)
T ss_pred hHHHHHHHHH
Confidence 9999999997
No 15
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=99.79 E-value=6.4e-19 Score=110.20 Aligned_cols=101 Identities=16% Similarity=0.272 Sum_probs=67.0
Q ss_pred cccccCcEEEeCCCCcccHHHHHhcCCCEEEEcccCccc-ccc---cChhhhhhcCCeEEEeeCCCCCCCchHHHHHHHH
Q psy7473 26 YDRIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYEL-YFA---NGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGV 101 (136)
Q Consensus 26 ~~~i~~~l~~g~~~~~~~~~~l~~~gi~~Vi~l~~~~~~-~~~---~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~ 101 (136)
+.+|++++++++++...+...+++.|+++|||++.+.|. ..+ ...+..+..|++|+|+|+... ....++++.+.
T Consensus 2 i~~i~~~~~vs~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~--~~~~~~v~~f~ 79 (110)
T PF04273_consen 2 IRQISDDLSVSGQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGG--AITEEDVEAFA 79 (110)
T ss_dssp -EEEETTEEEECS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TT--T--HHHHHHHH
T ss_pred CEecCCCeEECCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCC--CCCHHHHHHHH
Confidence 468999999999999999999999999999999988663 111 122446679999999999974 46677777777
Q ss_pred HHHHHHHHcCCeEEEEcCCCCChHHHHHHHH
Q psy7473 102 DFIQRISKTGGTVYVHCKAGRTRSATLVGCY 132 (136)
Q Consensus 102 ~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ay 132 (136)
+.+++ .++|||+||+.|. ||+++.+..
T Consensus 80 ~~l~~---~~~Pvl~hC~sG~-Ra~~l~~l~ 106 (110)
T PF04273_consen 80 DALES---LPKPVLAHCRSGT-RASALWALA 106 (110)
T ss_dssp HHHHT---TTTSEEEE-SCSH-HHHHHHHHH
T ss_pred HHHHh---CCCCEEEECCCCh-hHHHHHHHH
Confidence 76665 3579999999995 998876653
No 16
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.75 E-value=6.4e-18 Score=114.72 Aligned_cols=64 Identities=36% Similarity=0.566 Sum_probs=58.8
Q ss_pred hhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCCCCChHHHHHHHHhhcC
Q psy7473 72 EWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLMKC 136 (136)
Q Consensus 72 ~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~ 136 (136)
.....++.+.++|+.|.. .+..+.+++++++|+...++|++|+|||.+|+|||||+++||||++
T Consensus 67 ~~~~~~~~~~~~~~~D~~-~p~~~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~ 130 (180)
T COG2453 67 IEENDGIQVLHLPILDGT-VPDLEDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLY 130 (180)
T ss_pred eeccCCceeeeeeecCCC-CCcHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHH
Confidence 345678999999999998 7777999999999999999999999999999999999999999974
No 17
>PLN02727 NAD kinase
Probab=99.72 E-value=3.7e-17 Score=130.34 Aligned_cols=102 Identities=16% Similarity=0.241 Sum_probs=84.9
Q ss_pred CcEEEeCCCCcccHHHHHhcCCCEEEEcccCccc-ccc--cChhhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHH
Q psy7473 31 ENIILGALPFKRLTNKLLEENVKGVVSMNEDYEL-YFA--NGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRI 107 (136)
Q Consensus 31 ~~l~~g~~~~~~~~~~l~~~gi~~Vi~l~~~~~~-~~~--~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~ 107 (136)
-.+|++++|.+.+.+.+.+.|+++|||++.+.+. .+. ...+..+..|++|+|+|+.+.. ++..++++++.+.+++
T Consensus 261 ~~~~rsgQpspe~la~LA~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~~-apt~EqVe~fa~~l~~- 338 (986)
T PLN02727 261 AAFWRGGQVTEEGLKWLLEKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVRT-APSAEQVEKFASLVSD- 338 (986)
T ss_pred eeEEEeCCCCHHHHHHHHHCCCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCCC-CCCHHHHHHHHHHHHh-
Confidence 3689999999999999999999999999998763 111 1233455689999999998876 7888999999998855
Q ss_pred HHcCCeEEEEcCCCCChHHHHHHHHhhc
Q psy7473 108 SKTGGTVYVHCKAGRTRSATLVGCYLMK 135 (136)
Q Consensus 108 ~~~~~~VlVHC~~G~~RS~~v~~ayLm~ 135 (136)
...+|||+||+.|.+|+|++++||+.+
T Consensus 339 -slpkPVLvHCKSGarRAGamvA~yl~~ 365 (986)
T PLN02727 339 -SSKKPIYLHSKEGVWRTSAMVSRWKQY 365 (986)
T ss_pred -hcCCCEEEECCCCCchHHHHHHHHHHH
Confidence 336799999999999999999999964
No 18
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=99.59 E-value=8.4e-15 Score=98.05 Aligned_cols=104 Identities=15% Similarity=0.196 Sum_probs=54.9
Q ss_pred cccCc-EEEeCCCCc---ccHHHHHhcCCCEEEEcccCcccccccChhhhhhcCCeEEEeeCCCCCCCc---h-------
Q psy7473 28 RIDEN-IILGALPFK---RLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTP---D------- 93 (136)
Q Consensus 28 ~i~~~-l~~g~~~~~---~~~~~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~i~~~~~p~~D~~~~~---~------- 93 (136)
.|-++ ||.++.+.. .+.+.|.++||++||||+++.|... .+.....|++++++|+.+..... .
T Consensus 15 ~ir~g~lyRS~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~---~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~ 91 (164)
T PF13350_consen 15 RIRPGRLYRSGNLSNLTEADLERLRELGIRTIIDLRSPTERER---APDPLIDGVQYVHIPIFGDDASSPDKLAELLQSS 91 (164)
T ss_dssp TS-TTSEEEES--TT--HHHHHHHHHTT--EEEE-S-HHHHHH---HS----TT-EEEE--SS-S-TTH----------H
T ss_pred eecCCcEEecCCcCcCCHHHHHHHHhCCCCEEEECCCcccccc---CCCCCcCCceeeeecccccccccccccccccccc
Confidence 34454 899988774 4566888999999999999987511 12223458999999998765331 0
Q ss_pred ---HHHH------------HHHHHHHHHHHHcCCeEEEEcCCCCChHHHHHHHHhh
Q psy7473 94 ---QDKL------------ERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLM 134 (136)
Q Consensus 94 ---~~~~------------~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm 134 (136)
...+ +.+.++++...++.++||+||++|++|||.+++..|.
T Consensus 92 ~~~~~~~~~~Y~~~~~~~~~~~~~~~~~l~~~~~p~l~HC~aGKDRTG~~~alll~ 147 (164)
T PF13350_consen 92 ADAPRGMLEFYREMLESYAEAYRKIFELLADAPGPVLFHCTAGKDRTGVVAALLLS 147 (164)
T ss_dssp HHHHHHHHHHHHHGGGSTHHHHHHHHHHHH-TT--EEEE-SSSSSHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHhhhHHHHHHHHHhccCCCcEEEECCCCCccHHHHHHHHHH
Confidence 0000 1112222222334479999999999999999988774
No 19
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.57 E-value=2.1e-14 Score=89.26 Aligned_cols=97 Identities=15% Similarity=0.157 Sum_probs=74.8
Q ss_pred cccccCcEEEeCCCCcccHHHHHhcCCCEEEEcccCccc-ccc---cChhhhhhcCCeEEEeeCCCCCCCchHHHHHHHH
Q psy7473 26 YDRIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYEL-YFA---NGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGV 101 (136)
Q Consensus 26 ~~~i~~~l~~g~~~~~~~~~~l~~~gi~~Vi~l~~~~~~-~~~---~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~ 101 (136)
+.+|++.+.+++++...|...++..|+++|||.+.+.|. ..| ...+..+..|+.|.|+|+.... ...+.++.+.
T Consensus 3 i~~I~d~lsVsgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~~--iT~~dV~~f~ 80 (130)
T COG3453 3 IRRINDRLSVSGQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGGG--ITEADVEAFQ 80 (130)
T ss_pred ceecccceeecCCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCCC--CCHHHHHHHH
Confidence 457899999999999999999999999999999988765 111 1234456789999999998743 3445555555
Q ss_pred HHHHHHHHcCCeEEEEcCCCCChHHHH
Q psy7473 102 DFIQRISKTGGTVYVHCKAGRTRSATL 128 (136)
Q Consensus 102 ~~i~~~~~~~~~VlVHC~~G~~RS~~v 128 (136)
+.+++ .++|||.||+.| .||-++
T Consensus 81 ~Al~e---aegPVlayCrsG-tRs~~l 103 (130)
T COG3453 81 RALDE---AEGPVLAYCRSG-TRSLNL 103 (130)
T ss_pred HHHHH---hCCCEEeeecCC-chHHHH
Confidence 55544 478999999999 588554
No 20
>KOG1572|consensus
Probab=99.48 E-value=3.3e-13 Score=93.20 Aligned_cols=103 Identities=17% Similarity=0.326 Sum_probs=82.5
Q ss_pred cccccCcEEEeCCCCcccHHHHHhcCCCEEEEcccCcccccccChhhhhhcCCeEEEeeCCCCC-------CCchHHHHH
Q psy7473 26 YDRIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIF-------DTPDQDKLE 98 (136)
Q Consensus 26 ~~~i~~~l~~g~~~~~~~~~~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~i~~~~~p~~D~~-------~~~~~~~~~ 98 (136)
++.|.++||.|++|...+...|+..+.++||.|+.+... ...-..++..+|++.++.+.... .+...+.+.
T Consensus 60 Fs~V~~~lyRSg~P~~~NfsFL~~L~LksIisL~pE~yp--~~nl~f~~~~~Ik~~~i~ie~~k~~~k~P~~~~~~~~i~ 137 (249)
T KOG1572|consen 60 FSMVDNGLYRSGFPRPENFSFLKTLHLKSIISLCPEPYP--EENLNFLESNGIKLYQIGIEGEKDNKKEPFVNIPDHSIR 137 (249)
T ss_pred ccccccceeecCCCCccchHHHHHhhhheEEEecCCCCC--hHHHHHHHhcCceEEEEecccccccccCCCCCChHHHHH
Confidence 788889999999999999999999999999999998642 11234677899999999987654 223345566
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCCChHHHHHHHH
Q psy7473 99 RGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCY 132 (136)
Q Consensus 99 ~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ay 132 (136)
.+++++-. +.+.|+||||..|..|+|+++.|.
T Consensus 138 ~~l~~lld--~~N~P~Lihc~rGkhRtg~lVgcl 169 (249)
T KOG1572|consen 138 KALKVLLD--KRNYPILIHCKRGKHRTGCLVGCL 169 (249)
T ss_pred HHHHHHhc--ccCCceEEecCCCCcchhhhHHHH
Confidence 66666433 456799999999999999999985
No 21
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=99.38 E-value=2.1e-12 Score=79.58 Aligned_cols=57 Identities=21% Similarity=0.267 Sum_probs=45.3
Q ss_pred eEEEeeCCCCCCCchHHHHHHHHHHHHHHHH---cCCeEEEEcCCCCChHHHHHHHHhhc
Q psy7473 79 EFLQLSTRDIFDTPDQDKLERGVDFIQRISK---TGGTVYVHCKAGRTRSATLVGCYLMK 135 (136)
Q Consensus 79 ~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~---~~~~VlVHC~~G~~RS~~v~~ayLm~ 135 (136)
.|++.+|+|...+...+.+.++++.+++..+ .+++|+|||.+|+||||+++++|++.
T Consensus 4 ~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~ 63 (105)
T smart00404 4 HYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILL 63 (105)
T ss_pred EEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHH
Confidence 4566778887645555778888888877654 36899999999999999999999874
No 22
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=99.38 E-value=2.1e-12 Score=79.58 Aligned_cols=57 Identities=21% Similarity=0.267 Sum_probs=45.3
Q ss_pred eEEEeeCCCCCCCchHHHHHHHHHHHHHHHH---cCCeEEEEcCCCCChHHHHHHHHhhc
Q psy7473 79 EFLQLSTRDIFDTPDQDKLERGVDFIQRISK---TGGTVYVHCKAGRTRSATLVGCYLMK 135 (136)
Q Consensus 79 ~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~---~~~~VlVHC~~G~~RS~~v~~ayLm~ 135 (136)
.|++.+|+|...+...+.+.++++.+++..+ .+++|+|||.+|+||||+++++|++.
T Consensus 4 ~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~ 63 (105)
T smart00012 4 HYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILL 63 (105)
T ss_pred EEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHH
Confidence 4566778887645555778888888877654 36899999999999999999999874
No 23
>KOG2836|consensus
Probab=99.36 E-value=9.3e-12 Score=79.20 Aligned_cols=106 Identities=23% Similarity=0.259 Sum_probs=79.3
Q ss_pred CCccccccC---cEEEeCCCCccc----HHHHHhcCCCEEEEcccCcccccccChhhhhhcCCeEEEeeCCCCCCCchHH
Q psy7473 23 RRWYDRIDE---NIILGALPFKRL----TNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQD 95 (136)
Q Consensus 23 ~~~~~~i~~---~l~~g~~~~~~~----~~~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~ 95 (136)
+|-|.+|.= ...|-..|.... .++|+++|+++|+.+|+... +....+..||..+..|.+|.. +|..+
T Consensus 6 rPAPveIsy~~MrFLIThnPtnaTln~fieELkKygvttvVRVCe~TY-----dt~~lek~GI~Vldw~f~dg~-ppp~q 79 (173)
T KOG2836|consen 6 RPAPVEISYKNMRFLITHNPTNATLNKFIEELKKYGVTTVVRVCEPTY-----DTTPLEKEGITVLDWPFDDGA-PPPNQ 79 (173)
T ss_pred CCCCeeeeccceEEEEecCCCchhHHHHHHHHHhcCCeEEEEeccccc-----CCchhhhcCceEeecccccCC-CCchH
Confidence 444555542 245555555543 35799999999999998743 466677899999999999986 67777
Q ss_pred HHHHHHHHHHHHH--HcCCeEEEEcCCCCChHHHHHHHHhh
Q psy7473 96 KLERGVDFIQRIS--KTGGTVYVHCKAGRTRSATLVGCYLM 134 (136)
Q Consensus 96 ~~~~~~~~i~~~~--~~~~~VlVHC~~G~~RS~~v~~ayLm 134 (136)
..++..+.+.... .+|.-|.|||-+|.||++++++.-|+
T Consensus 80 vv~~w~~l~~~~f~e~p~~cvavhcvaglgrapvlvalali 120 (173)
T KOG2836|consen 80 VVDDWLSLVKTKFREEPGCCVAVHCVAGLGRAPVLVALALI 120 (173)
T ss_pred HHHHHHHHHHHHHhhCCCCeEEEEeecccCcchHHHHHHHH
Confidence 7777777654433 56789999999999999999988775
No 24
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=99.26 E-value=1e-11 Score=81.88 Aligned_cols=64 Identities=22% Similarity=0.462 Sum_probs=49.7
Q ss_pred hhhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCCCCChHHHHHHHHhhc
Q psy7473 70 REEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLMK 135 (136)
Q Consensus 70 ~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~ 135 (136)
....+..|+.|+++|+.|.. .|..+.++++++++... .++..+.+||.+|.|||.+..+.|.|.
T Consensus 85 ~~~~~~~g~~Y~Ripitd~~-~P~~~~iD~fi~~v~~~-p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 85 EELVEGNGLRYYRIPITDHQ-APDPEDIDAFINFVKSL-PKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp HHHHHHTT-EEEEEEE-TTS----HHHHHHHHHHHHTS--TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred HHHHhcCCceEEEEeCCCcC-CCCHHHHHHHHHHHHhC-CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 34456789999999999997 99999999999999988 667899999999999999998888774
No 25
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=99.10 E-value=1.5e-10 Score=81.34 Aligned_cols=60 Identities=22% Similarity=0.304 Sum_probs=43.8
Q ss_pred hcCCeEEEee-CCCCCCCchHHHHHHHHHHHHHHHH--cCCeEEEEcCCCCChHHHHHHHHhh
Q psy7473 75 KVGVEFLQLS-TRDIFDTPDQDKLERGVDFIQRISK--TGGTVYVHCKAGRTRSATLVGCYLM 134 (136)
Q Consensus 75 ~~~i~~~~~p-~~D~~~~~~~~~~~~~~~~i~~~~~--~~~~VlVHC~~G~~RS~~v~~ayLm 134 (136)
...+.+++++ +.|...++..+.+.++++.+++... .++||+|||.+|.||||++++++++
T Consensus 127 ~~~V~~~~~~~W~d~~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~ 189 (231)
T cd00047 127 TRTVTHFQYTGWPDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDIL 189 (231)
T ss_pred ceEEEEEeECCCCCCCccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHH
Confidence 3445555544 6676645555677777777766542 4689999999999999999999875
No 26
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=99.02 E-value=7.2e-10 Score=79.14 Aligned_cols=51 Identities=22% Similarity=0.307 Sum_probs=38.0
Q ss_pred eCCCCCCCchHHHHHHHHHHHHHHHHc-CCeEEEEcCCCCChHHHHHHHHhh
Q psy7473 84 STRDIFDTPDQDKLERGVDFIQRISKT-GGTVYVHCKAGRTRSATLVGCYLM 134 (136)
Q Consensus 84 p~~D~~~~~~~~~~~~~~~~i~~~~~~-~~~VlVHC~~G~~RS~~v~~ayLm 134 (136)
.+.|.+.+...+.+.++++.+++.... ++||+|||.+|+||||++++++++
T Consensus 165 ~W~d~~~P~~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~ 216 (258)
T smart00194 165 NWPDHGVPESPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDIL 216 (258)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHH
Confidence 355655444556666666666665443 789999999999999999999875
No 27
>KOG2283|consensus
Probab=98.98 E-value=7.7e-10 Score=83.83 Aligned_cols=104 Identities=18% Similarity=0.242 Sum_probs=76.8
Q ss_pred ccccccCcEEEeCCCCcccHHH-----------HHh--cCCCEEEEcccCcccccccChhhhhhcCCeEEEeeCCCCCCC
Q psy7473 25 WYDRIDENIILGALPFKRLTNK-----------LLE--ENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDT 91 (136)
Q Consensus 25 ~~~~i~~~l~~g~~~~~~~~~~-----------l~~--~gi~~Vi~l~~~~~~~~~~~~~~~~~~~i~~~~~p~~D~~~~ 91 (136)
.++-|+++|...++|....... |.. .+--.|.||+.+.- .....+.. ....+|+.|.. +
T Consensus 14 DltYIT~rIIamsfPa~~~es~yRN~l~dV~~fL~s~H~~~y~vyNL~~er~----yd~~~f~g---~V~~~~~~Dh~-~ 85 (434)
T KOG2283|consen 14 DLTYITSRIIAMSFPAEGIESLYRNNLEDVVLFLDSKHKDHYKVYNLSSERL----YDPSRFHG---RVARFGFDDHN-P 85 (434)
T ss_pred cceeeeeeEEEEeCCCCcchhhhcCCHHHHHHHHhhccCCceEEEecCcccc----CCcccccc---ceeecCCCCCC-C
Confidence 3888999999999987755432 222 24445778886321 11222222 24458999987 8
Q ss_pred chHHHHHHHHHHHHHHHH--cCCeEEEEcCCCCChHHHHHHHHhhcC
Q psy7473 92 PDQDKLERGVDFIQRISK--TGGTVYVHCKAGRTRSATLVGCYLMKC 136 (136)
Q Consensus 92 ~~~~~~~~~~~~i~~~~~--~~~~VlVHC~~G~~RS~~v~~ayLm~~ 136 (136)
|..+.+..+++-++.+++ ....|.|||++|++|||++++||||+.
T Consensus 86 P~L~~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~icA~L~~~ 132 (434)
T KOG2283|consen 86 PPLELLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGVMICAYLIYS 132 (434)
T ss_pred CcHHHHHHHHHCHHHHHhcCccceEEEEccCCCcceEEEEeHHHHhh
Confidence 999999999999999984 446899999999999999999999973
No 28
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=98.98 E-value=1.1e-09 Score=79.71 Aligned_cols=51 Identities=14% Similarity=0.029 Sum_probs=35.5
Q ss_pred eeCCCCCCCchHHHHHHHHHHHHHHH---------HcCCeEEEEcCCCCChHHHHHHHHh
Q psy7473 83 LSTRDIFDTPDQDKLERGVDFIQRIS---------KTGGTVYVHCKAGRTRSATLVGCYL 133 (136)
Q Consensus 83 ~p~~D~~~~~~~~~~~~~~~~i~~~~---------~~~~~VlVHC~~G~~RS~~v~~ayL 133 (136)
..|+|.+.+.....|-+++..+++.. ...+||+|||++|+||||++++.-.
T Consensus 184 t~WPd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~PIVVHCSaGvGRTGtFcaiDi 243 (298)
T PHA02740 184 TAWPADGFSHDPDAFIDFFCNIDDLCADLEKHKADGKIAPIIIDCIDGISSSAVFCVFDI 243 (298)
T ss_pred cCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEECCCCCchhHHHHHHHH
Confidence 35777765555656665555554321 1247999999999999999998754
No 29
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=98.97 E-value=1.6e-09 Score=82.75 Aligned_cols=52 Identities=25% Similarity=0.405 Sum_probs=38.4
Q ss_pred eCCCCCCCchHHHHHHHHHHHHHHHHcC---------CeEEEEcCCCCChHHHHHHHHhhc
Q psy7473 84 STRDIFDTPDQDKLERGVDFIQRISKTG---------GTVYVHCKAGRTRSATLVGCYLMK 135 (136)
Q Consensus 84 p~~D~~~~~~~~~~~~~~~~i~~~~~~~---------~~VlVHC~~G~~RS~~v~~ayLm~ 135 (136)
.|+|++.++..+.+.++++.++...+.+ ++.+|||++|+||||+++++++|+
T Consensus 430 nWPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRTGTFIAi~llk 490 (535)
T PRK15375 430 NWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLK 490 (535)
T ss_pred CCCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchHHHHHHHHHHh
Confidence 4778775566666777777776653221 234799999999999999999985
No 30
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=98.95 E-value=2.4e-09 Score=69.62 Aligned_cols=87 Identities=17% Similarity=0.233 Sum_probs=56.4
Q ss_pred CCcccHHHHHhcCCCEEEEcccCcccccccChhhhhhcCCeEEEeeCCC-----CC-CCchHHHHHHHHHHHHHHHHcCC
Q psy7473 39 PFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRD-----IF-DTPDQDKLERGVDFIQRISKTGG 112 (136)
Q Consensus 39 ~~~~~~~~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~i~~~~~p~~D-----~~-~~~~~~~~~~~~~~i~~~~~~~~ 112 (136)
|.....+...+.|-++++++....+. +.. +...... .++.+-+.| .+ ..+.+++.+.+++|++++-+. .
T Consensus 20 Pl~~~ae~~~rh~~t~mlsl~a~~t~-~~~-pa~~~~e--rhL~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp~~-a 94 (172)
T COG5350 20 PLSVIAETAARHGPTHMLSLLAKGTY-FHR-PAVIAAE--RHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPRF-A 94 (172)
T ss_pred hHHHHHHHHhhcCCceEEEeeccccc-ccC-ccccchh--hceeEeeccccCCCccccCCCHHHHHHHHHHHhcCccc-c
Confidence 33344455666899999999986542 110 0010011 223333333 22 467789999999999998665 7
Q ss_pred eEEEEcCCCCChHHHHHH
Q psy7473 113 TVYVHCKAGRTRSATLVG 130 (136)
Q Consensus 113 ~VlVHC~~G~~RS~~v~~ 130 (136)
++||||.+|+|||.+.+.
T Consensus 95 pllIHC~aGISRStA~A~ 112 (172)
T COG5350 95 PLLIHCYAGISRSTAAAL 112 (172)
T ss_pred ceeeeeccccccchHHHH
Confidence 999999999999976543
No 31
>PHA02738 hypothetical protein; Provisional
Probab=98.93 E-value=1.9e-09 Score=79.34 Aligned_cols=51 Identities=18% Similarity=0.140 Sum_probs=36.2
Q ss_pred eeCCCCCCCchHHHHHHHHHHHHHHHH--------------cCCeEEEEcCCCCChHHHHHHHHh
Q psy7473 83 LSTRDIFDTPDQDKLERGVDFIQRISK--------------TGGTVYVHCKAGRTRSATLVGCYL 133 (136)
Q Consensus 83 ~p~~D~~~~~~~~~~~~~~~~i~~~~~--------------~~~~VlVHC~~G~~RS~~v~~ayL 133 (136)
..|+|.+.+.....|-+++..+++..+ ..+||+|||.+|+||||++++.-.
T Consensus 185 ~~Wpd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~~~~~~PIVVHCs~GiGRtGtFcaidi 249 (320)
T PHA02738 185 TAWPDHDVPKNTSEFLNFVLEVRQCQKELAQESLQIGHNRLQPPPIVVHCNAGLGRTPCYCVVDI 249 (320)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhhhcccCccccCCCCeEEEcCCCCChhhhhhHHHH
Confidence 357777655566666666666654321 136999999999999999988654
No 32
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=98.93 E-value=1.6e-09 Score=79.23 Aligned_cols=52 Identities=17% Similarity=0.121 Sum_probs=37.6
Q ss_pred eeCCCCCCCchHHHHHHHHHHHHHHHH------------cCCeEEEEcCCCCChHHHHHHHHhh
Q psy7473 83 LSTRDIFDTPDQDKLERGVDFIQRISK------------TGGTVYVHCKAGRTRSATLVGCYLM 134 (136)
Q Consensus 83 ~p~~D~~~~~~~~~~~~~~~~i~~~~~------------~~~~VlVHC~~G~~RS~~v~~ayLm 134 (136)
..|+|.+.+.....+-+++..+++... ..+||+|||.+|+||||++++...+
T Consensus 189 ~~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtF~aid~~ 252 (303)
T PHA02742 189 EDWPHGGLPRDPNKFLDFVLAVREADLKADVDIKGENIVKEPPILVHCSAGLDRAGAFCAIDIC 252 (303)
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEECCCCCchhHHHHHHHHH
Confidence 357777755566667666666655321 1379999999999999999987653
No 33
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=98.93 E-value=2.9e-09 Score=78.10 Aligned_cols=50 Identities=14% Similarity=0.162 Sum_probs=36.1
Q ss_pred eCCCCCCCchHHHHHHHHHHHHHHHH-----------cCCeEEEEcCCCCChHHHHHHHHh
Q psy7473 84 STRDIFDTPDQDKLERGVDFIQRISK-----------TGGTVYVHCKAGRTRSATLVGCYL 133 (136)
Q Consensus 84 p~~D~~~~~~~~~~~~~~~~i~~~~~-----------~~~~VlVHC~~G~~RS~~v~~ayL 133 (136)
.|+|.+.+.....+.+++..+++..+ ..+||+|||.+|+||||++++.-.
T Consensus 191 ~Wpd~~~P~~~~~~l~fi~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRtGtfcaidi 251 (312)
T PHA02747 191 EWFEDETPSDHPDFIKFIKIIDINRKKSGKLFNPKDALLCPIVVHCSDGVGKTGIFCAVDI 251 (312)
T ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhhccccccccCCCCEEEEecCCCcchhHHHHHHH
Confidence 57777655556666666666655432 126999999999999999998764
No 34
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=98.89 E-value=2.3e-09 Score=76.30 Aligned_cols=105 Identities=17% Similarity=0.282 Sum_probs=57.6
Q ss_pred cccccC-cEEEeCCCCcccHH--HHHhcCCCEEEEcccCccc---ccccChhhh-hhcCCeEEEeeCCCCCCCchHHHHH
Q psy7473 26 YDRIDE-NIILGALPFKRLTN--KLLEENVKGVVSMNEDYEL---YFANGREEW-NKVGVEFLQLSTRDIFDTPDQDKLE 98 (136)
Q Consensus 26 ~~~i~~-~l~~g~~~~~~~~~--~l~~~gi~~Vi~l~~~~~~---~~~~~~~~~-~~~~i~~~~~p~~D~~~~~~~~~~~ 98 (136)
...+.+ ..|.++.|...+.. .....++++++++..+.+. ........+ ...++....++..... .. ..+
T Consensus 47 ~~~i~~~~~~Rs~~p~~~~~~~~~~~~~~l~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~e 122 (249)
T COG2365 47 FLGIIPIIDYRSGQPVPVQPDPELLDALYLKTIINLRDESNTNVELYTDHLINWDKAAIIMFESYRSFPTR-ED---AAE 122 (249)
T ss_pred cccccceeEcCCCCcccccCCccccccccccccccccccchhhhhhhhhhhhhhccccchhhhhhccCccc-hh---hHH
Confidence 344444 47888888877666 4555888888888862211 111001000 0111111111211111 22 233
Q ss_pred HHHHHHHHHHHcC-CeEEEEcCCCCChHHHHHHHHhh
Q psy7473 99 RGVDFIQRISKTG-GTVYVHCKAGRTRSATLVGCYLM 134 (136)
Q Consensus 99 ~~~~~i~~~~~~~-~~VlVHC~~G~~RS~~v~~ayLm 134 (136)
.+.+++.-.+..+ +|||+||.+|+.|||.++++|+.
T Consensus 123 ~~~~~~~l~~~~e~~PvL~HC~~GkdRTGl~~al~r~ 159 (249)
T COG2365 123 RLVELLQLLADAENGPVLIHCTAGKDRTGLVAALYRK 159 (249)
T ss_pred HHHHHHHHHhhcccCCEEEecCCCCcchHHHHHHHHH
Confidence 3344443444443 89999999999999999999985
No 35
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=98.86 E-value=3.2e-09 Score=78.26 Aligned_cols=50 Identities=18% Similarity=0.155 Sum_probs=35.5
Q ss_pred eCCCCCCCchHHHHHHHHHHHHHHHH--------c---CCeEEEEcCCCCChHHHHHHHHh
Q psy7473 84 STRDIFDTPDQDKLERGVDFIQRISK--------T---GGTVYVHCKAGRTRSATLVGCYL 133 (136)
Q Consensus 84 p~~D~~~~~~~~~~~~~~~~i~~~~~--------~---~~~VlVHC~~G~~RS~~v~~ayL 133 (136)
.|+|.+.+.....+-++++.+++..+ . .+||+|||.+|+||||++++.-.
T Consensus 209 ~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtfcaid~ 269 (323)
T PHA02746 209 DWPDNGIPTGMAEFLELINKVNEEQAELIKQADNDPQTLGPIVVHCSAGIGRAGTFCAIDN 269 (323)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCEEEEcCCCCCcchhHHHHHH
Confidence 46776655556666666666655321 1 27999999999999999998654
No 36
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.77 E-value=4.9e-09 Score=73.92 Aligned_cols=98 Identities=21% Similarity=0.399 Sum_probs=54.4
Q ss_pred CCCccccccCcEEEeCCCCcccHHHHHhcCCCEEEEcccCcccccccChhhhhhcCCeEEEee---CCCCCCCchHHHHH
Q psy7473 22 SRRWYDRIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLS---TRDIFDTPDQDKLE 98 (136)
Q Consensus 22 ~~~~~~~i~~~l~~g~~~~~~~~~~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~i~~~~~p---~~D~~~~~~~~~~~ 98 (136)
...||..+.+.+-+|..-...-..++. ...++++.. .+. . .. ...+...+|+- |.|.. .| .+.
T Consensus 137 ~qYWp~~~~~~~~~G~~v~~~~~~e~~---~d~~~~~~~-f~L--~--~~--~~~~k~Ihhf~y~nW~D~~-~p---~i~ 202 (302)
T COG5599 137 DQYWPLGYDDTLIIGLRVIKQKKYELF---NDNIVNVHN-FEL--T--SI--NGPPKKIHHFQYINWVDFN-VP---DIR 202 (302)
T ss_pred hhhCCCCcCcceeeeeEEEEEeccccc---ccceeeeee-ccc--c--cC--CCCccEEEEEEecCccccC-Cc---CHH
Confidence 456778888888888443222212222 223333221 111 0 00 12333344443 66665 44 445
Q ss_pred HHHHHHHHHH---HcCCeEEEEcCCCCChHHHHHHHHh
Q psy7473 99 RGVDFIQRIS---KTGGTVYVHCKAGRTRSATLVGCYL 133 (136)
Q Consensus 99 ~~~~~i~~~~---~~~~~VlVHC~~G~~RS~~v~~ayL 133 (136)
+..+++.... -+++|++|||.||+|||||+++.-.
T Consensus 203 sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ 240 (302)
T COG5599 203 SLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDI 240 (302)
T ss_pred HHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHH
Confidence 5555555554 2578999999999999999987643
No 37
>KOG0792|consensus
Probab=98.65 E-value=4e-08 Score=79.99 Aligned_cols=50 Identities=18% Similarity=0.228 Sum_probs=40.1
Q ss_pred eCCCCCCCchHHHHHHHHHHHHHHHHc-CCeEEEEcCCCCChHHHHHHHHh
Q psy7473 84 STRDIFDTPDQDKLERGVDFIQRISKT-GGTVYVHCKAGRTRSATLVGCYL 133 (136)
Q Consensus 84 p~~D~~~~~~~~~~~~~~~~i~~~~~~-~~~VlVHC~~G~~RS~~v~~ayL 133 (136)
.|+|.+.+....+|.++++.|+..++. +-||+|||.+|+||||+++++=+
T Consensus 1035 aWPDHg~P~D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~ 1085 (1144)
T KOG0792|consen 1035 AWPDHGVPDDPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMET 1085 (1144)
T ss_pred ccccCCCCCChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHH
Confidence 466766677778888888888877765 56999999999999999887544
No 38
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=98.65 E-value=8.9e-08 Score=66.92 Aligned_cols=52 Identities=19% Similarity=0.284 Sum_probs=37.2
Q ss_pred eCCCCCCCchHHHHHHHHHHHHHHH-HcCCeEEEEcCCCCChHHHHHHHHhhc
Q psy7473 84 STRDIFDTPDQDKLERGVDFIQRIS-KTGGTVYVHCKAGRTRSATLVGCYLMK 135 (136)
Q Consensus 84 p~~D~~~~~~~~~~~~~~~~i~~~~-~~~~~VlVHC~~G~~RS~~v~~ayLm~ 135 (136)
.+.|...++..+.+-++++.+.+.. ..++|++|||..|.||||+++++.++.
T Consensus 142 ~W~~~~~P~~~~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~ 194 (235)
T PF00102_consen 142 NWPDDGVPPSPESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILI 194 (235)
T ss_dssp SSSSSSSGSSSHHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHH
T ss_pred eccccccccccchhhhhhhhccccccCCccceEeecccccccccccccchhhc
Confidence 4555543334555556666655554 355899999999999999999998763
No 39
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=98.48 E-value=7.4e-07 Score=68.18 Aligned_cols=101 Identities=18% Similarity=0.196 Sum_probs=75.8
Q ss_pred ccCcEEEeCCCCcccH----HHHHhcCCCEEEEcccCcccccccChhhhhhcCCeEEEeeCCCCC--CCchHHHHHHHHH
Q psy7473 29 IDENIILGALPFKRLT----NKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIF--DTPDQDKLERGVD 102 (136)
Q Consensus 29 i~~~l~~g~~~~~~~~----~~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~i~~~~~p~~D~~--~~~~~~~~~~~~~ 102 (136)
++.+||+|........ ..-....+..||++...... .........++++|+.... ...+...+.++++
T Consensus 292 ~~~~i~ig~~~~~l~~~~~~~~~~~~~~~~vI~~s~~~~~------~~~~~~~~~~L~l~i~~~K~gs~~LR~~LP~i~~ 365 (451)
T PF04179_consen 292 GTTGIYIGKISSNLAISKAQLPDLESEFDCVINCSESPTP------KESWPKSPKYLHLPIPSSKKGSRDLRKALPKICS 365 (451)
T ss_pred CCCCeEEeccCCccccchhhccccCCCcCEEEEcCCCccc------ccccCCCceEEeCcCCCCcccHHHHHHHHHHHHH
Confidence 4668999998763211 11223678899999877531 1223456789999998764 3456788999999
Q ss_pred HHHHHHHc--CCeEEEEcCCCCChHHHHHHHHhhc
Q psy7473 103 FIQRISKT--GGTVYVHCKAGRTRSATLVGCYLMK 135 (136)
Q Consensus 103 ~i~~~~~~--~~~VlVHC~~G~~RS~~v~~ayLm~ 135 (136)
|+...+.+ +++|+|+|..|+..|..++.|.|++
T Consensus 366 fv~~~L~~~~~~~iLV~C~sGkDlSVgVaLaILc~ 400 (451)
T PF04179_consen 366 FVRSHLSSDPGKPILVCCDSGKDLSVGVALAILCK 400 (451)
T ss_pred HHHHHhcccCCCcEEEEcCCcchHHHHHHHHHHHH
Confidence 99998876 8999999999999999999998875
No 40
>KOG0791|consensus
Probab=98.37 E-value=6.4e-07 Score=65.88 Aligned_cols=99 Identities=16% Similarity=0.241 Sum_probs=60.3
Q ss_pred cCCCccccccCcEEEeCCCCcccHHHHHhcCCCEEEEcccCcccccccChhhhhhcC-CeEEEeeCCCCCCCchHHHHHH
Q psy7473 21 TSRRWYDRIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVG-VEFLQLSTRDIFDTPDQDKLER 99 (136)
Q Consensus 21 ~~~~~~~~i~~~l~~g~~~~~~~~~~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~-i~~~~~p~~D~~~~~~~~~~~~ 99 (136)
.+..||.+-.+ ++.|......-.+. ...=..|+++.-... .+... ..++..-++|++.+.....+.+
T Consensus 207 c~~ywP~~~~~-~~~gdi~V~~v~e~--~~~~w~ir~~~l~~~---------~~sr~ir~f~y~~wPd~gvp~~~~sl~~ 274 (374)
T KOG0791|consen 207 CDEYWPDEEVP-VAYGDITVTMVSEE--SLDEWTIREFRLNYA---------GESRKIRHFHYTAWPDFGVPSSTESLLQ 274 (374)
T ss_pred hhhhccccccc-ceeccEEEEEechh--hcCCceEEEEeeecc---------cccceeEEEEEeeccccCCCCCchhHHH
Confidence 45667777777 88887755432221 111123333332210 01222 3455567888885544556666
Q ss_pred HHHHHHHHH-HcCCeEEEEcCCCCChHHHHHHH
Q psy7473 100 GVDFIQRIS-KTGGTVYVHCKAGRTRSATLVGC 131 (136)
Q Consensus 100 ~~~~i~~~~-~~~~~VlVHC~~G~~RS~~v~~a 131 (136)
+.....+.. ...++++|||.+|+|||||+.+.
T Consensus 275 f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFial 307 (374)
T KOG0791|consen 275 FVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIAL 307 (374)
T ss_pred HHHHHHhhcccCCCceeEEeecccccccchHhH
Confidence 666666666 34589999999999999999875
No 41
>KOG2386|consensus
Probab=98.32 E-value=7.6e-07 Score=66.56 Aligned_cols=90 Identities=20% Similarity=0.304 Sum_probs=64.8
Q ss_pred cHHHHHh--cCCCEEEEcccCcccccccChhhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHH----HHcCCeEEE
Q psy7473 43 LTNKLLE--ENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRI----SKTGGTVYV 116 (136)
Q Consensus 43 ~~~~l~~--~gi~~Vi~l~~~~~~~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~----~~~~~~VlV 116 (136)
....|++ ..+.-+||++...- -...+..+..|+.|+.+........|..+....+.+.+++- ...++=|+|
T Consensus 53 l~~~l~~~~~~vgl~iDltnt~r---yy~~~~~~~~g~~Y~K~~c~g~~~vp~~~~v~~fv~~v~~f~~~~~~~~~LI~v 129 (393)
T KOG2386|consen 53 LFELLKEHNYKVGLKIDLTNTLR---YYDKPELEERGVKYLKRNCPGRGVVPRTELVDKFVKLVKGFVDDTKLDDELIGV 129 (393)
T ss_pred HHHHHHhcCceEEEEEeccceee---eeccccccccceeEEEeccCCcccCCCccchHHHHHHHHHHHhcccCCCCEEEE
Confidence 3344555 66778898886643 12466777899999988877766455555555555554443 457789999
Q ss_pred EcCCCCChHHHHHHHHhhc
Q psy7473 117 HCKAGRTRSATLVGCYLMK 135 (136)
Q Consensus 117 HC~~G~~RS~~v~~ayLm~ 135 (136)
||..|++|+|-++++|||.
T Consensus 130 hcthG~NrtgyLI~~yL~~ 148 (393)
T KOG2386|consen 130 HCTHGLNRTGYLICAYLAD 148 (393)
T ss_pred eCCCcccccceeeeeeeee
Confidence 9999999999999999984
No 42
>KOG0790|consensus
Probab=98.25 E-value=8.2e-07 Score=66.95 Aligned_cols=86 Identities=19% Similarity=0.173 Sum_probs=52.2
Q ss_pred HHHHhcCCCEEEEcccCcccccc-----cC---hhhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHH---HHcCCe
Q psy7473 45 NKLLEENVKGVVSMNEDYELYFA-----NG---REEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRI---SKTGGT 113 (136)
Q Consensus 45 ~~l~~~gi~~Vi~l~~~~~~~~~-----~~---~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~---~~~~~~ 113 (136)
..+.++|+-.|-|+.+.....+. .. .......-..|+...|+|++.+..+.-+..+++-++.- +..-+|
T Consensus 374 ~~~e~~G~~~v~~v~E~~t~dY~LR~l~vs~~~~g~~~R~I~~yh~~tWPDHGvP~dPg~vLnFLe~V~~rq~~l~~Agp 453 (600)
T KOG0790|consen 374 GALEEYGVMRVRNVKESDTHDYTLRELKVSKLGNGNLEREIWHYHYLTWPDHGVPSDPGGVLNFLEEVNHRQESLMDAGP 453 (600)
T ss_pred cchhhcCceEEEeccccccccceehheeeccccCCcchhhhhhhheeecccCCCcCCccHHHHHHHHhhhhhccccccCc
Confidence 34666788887777654322000 00 00112234467778899988555555555555555432 223479
Q ss_pred EEEEcCCCCChHHHHHH
Q psy7473 114 VYVHCKAGRTRSATLVG 130 (136)
Q Consensus 114 VlVHC~~G~~RS~~v~~ 130 (136)
|.|||++|+||||++++
T Consensus 454 IvVHCSAGIGrTGTfiV 470 (600)
T KOG0790|consen 454 IVVHCSAGIGRTGTFIV 470 (600)
T ss_pred EEEEccCCcCCcceEEE
Confidence 99999999999999764
No 43
>KOG0789|consensus
Probab=98.06 E-value=8.7e-06 Score=61.72 Aligned_cols=23 Identities=39% Similarity=0.510 Sum_probs=20.4
Q ss_pred cCCeEEEEcCCCCChHHHHHHHH
Q psy7473 110 TGGTVYVHCKAGRTRSATLVGCY 132 (136)
Q Consensus 110 ~~~~VlVHC~~G~~RS~~v~~ay 132 (136)
..+|+.|||.+|+||||++++.-
T Consensus 298 ~~~P~vVhcsaG~gRtgt~v~~~ 320 (415)
T KOG0789|consen 298 KQEPIEVHCSAGAGRAGTLVLIE 320 (415)
T ss_pred CCCCeEEECCCCCCccchHHHHH
Confidence 45899999999999999999754
No 44
>KOG4228|consensus
Probab=97.83 E-value=1.1e-05 Score=66.50 Aligned_cols=49 Identities=22% Similarity=0.317 Sum_probs=32.8
Q ss_pred eEEEeeCCCCCCCchHHHHHHHHHHHHHHHH----cCCeEEEEcCCCCChHHHHHH
Q psy7473 79 EFLQLSTRDIFDTPDQDKLERGVDFIQRISK----TGGTVYVHCKAGRTRSATLVG 130 (136)
Q Consensus 79 ~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~----~~~~VlVHC~~G~~RS~~v~~ 130 (136)
+++.-.++|++.+. .-..+++|+++... ..||++|||.+|+||||++++
T Consensus 697 qfhFt~Wpd~gvPe---~~t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi~ 749 (1087)
T KOG4228|consen 697 QFHFTAWPDHGVPE---TPTGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFIV 749 (1087)
T ss_pred eeeeccCCCCCCcc---cchHHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEEE
Confidence 34444577776333 33455566666553 349999999999999998653
No 45
>KOG0793|consensus
Probab=97.63 E-value=0.00013 Score=58.16 Aligned_cols=98 Identities=16% Similarity=0.132 Sum_probs=60.4
Q ss_pred EEEeCCCCc-c----cHHHHHhcCCCEEEEcccCccc-------ccccChhh------------------------h---
Q psy7473 33 IILGALPFK-R----LTNKLLEENVKGVVSMNEDYEL-------YFANGREE------------------------W--- 73 (136)
Q Consensus 33 l~~g~~~~~-~----~~~~l~~~gi~~Vi~l~~~~~~-------~~~~~~~~------------------------~--- 73 (136)
.||..+... . -++..=+.|+..||+|+...|. +|+....+ |
T Consensus 804 aYIAtQgPl~stiA~FWQmvWe~G~~vIV~Lt~l~Engv~qc~rYWPdeGselyhiyEV~LVSEHIWceDfLVRSFYLKN 883 (1004)
T KOG0793|consen 804 AYIATQGPLPSTIADFWQMVWESGCVVIVMLTPLAENGVRQCYRYWPDEGSELYHIYEVNLVSEHIWCEDFLVRSFYLKN 883 (1004)
T ss_pred ceeeccCCCchHHHHHHHHHHHcCcEEEEEecChhhcchhhhhhcCCCCCcceeeeEEeeeehhhhhhhhHHHHHHHHhh
Confidence 677665322 2 2244567999999999986654 45543211 0
Q ss_pred ----hh-cCCeEEEeeCCCCCCCchHHHHHHHHHHHHHHH-HcCCeEEEEcCCCCChHHHHHH
Q psy7473 74 ----NK-VGVEFLQLSTRDIFDTPDQDKLERGVDFIQRIS-KTGGTVYVHCKAGRTRSATLVG 130 (136)
Q Consensus 74 ----~~-~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~-~~~~~VlVHC~~G~~RS~~v~~ 130 (136)
+. .-.+++.+.|.+.+.+.+...+.++-.-+.+.. -+..+|+|||+.|-||||+-++
T Consensus 884 lqtseTRTvTQFHfLSWp~egvPasarslLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~Yil 946 (1004)
T KOG0793|consen 884 LQTSETRTVTQFHFLSWPDEGVPASARSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYIL 946 (1004)
T ss_pred cccccceeeeeeeeecccccCCccchHHHHHHHHHhhhhccCCCCceEEEccCCCCccceeee
Confidence 00 122456677887775555555554444444443 2457999999999999998654
No 46
>KOG4228|consensus
Probab=96.61 E-value=0.0026 Score=53.12 Aligned_cols=24 Identities=29% Similarity=0.632 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCChHHHHHHHHhh
Q psy7473 111 GGTVYVHCKAGRTRSATLVGCYLM 134 (136)
Q Consensus 111 ~~~VlVHC~~G~~RS~~v~~ayLm 134 (136)
.+|+.|||..|.||||+++++-++
T Consensus 1018 ~~P~~Vhc~nG~~rsg~f~ai~~l 1041 (1087)
T KOG4228|consen 1018 DGPIIVHCLNGVGRTGTFCAISIL 1041 (1087)
T ss_pred CCCEEEEEcCCCcceeehHHHHHH
Confidence 589999999999999999987653
No 47
>PLN02160 thiosulfate sulfurtransferase
Probab=96.59 E-value=0.0059 Score=39.57 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=16.8
Q ss_pred HHcCCeEEEEcCCCCChHHHHHH
Q psy7473 108 SKTGGTVYVHCKAGRTRSATLVG 130 (136)
Q Consensus 108 ~~~~~~VlVHC~~G~~RS~~v~~ 130 (136)
...+++|++||..| .||...+.
T Consensus 78 ~~~~~~IivyC~sG-~RS~~Aa~ 99 (136)
T PLN02160 78 LNPADDILVGCQSG-ARSLKATT 99 (136)
T ss_pred cCCCCcEEEECCCc-HHHHHHHH
Confidence 35678999999999 58865543
No 48
>KOG4471|consensus
Probab=96.42 E-value=0.0068 Score=47.83 Aligned_cols=34 Identities=29% Similarity=0.536 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCCCCChHHHHHHH
Q psy7473 98 ERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGC 131 (136)
Q Consensus 98 ~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~a 131 (136)
..++...++....+.+|||||..|-+||+-+++.
T Consensus 361 aga~~Ia~kVe~~~~sVlVHCSDGWDRT~QlvsL 394 (717)
T KOG4471|consen 361 AGAVRIADKVESESRSVLVHCSDGWDRTAQLVSL 394 (717)
T ss_pred HHHHHHHHHHhcCCceEEEEcCCCccchHHHHHH
Confidence 4444555555677889999999999999876653
No 49
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=96.38 E-value=0.024 Score=34.41 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=16.8
Q ss_pred HcCCeEEEEcCCCCChHHHHHHHHh
Q psy7473 109 KTGGTVYVHCKAGRTRSATLVGCYL 133 (136)
Q Consensus 109 ~~~~~VlVHC~~G~~RS~~v~~ayL 133 (136)
..+++|+|+|..| .||... +.+|
T Consensus 59 ~~~~~ivvyC~~G-~rs~~a-~~~L 81 (101)
T cd01518 59 LKGKKVLMYCTGG-IRCEKA-SAYL 81 (101)
T ss_pred cCCCEEEEECCCc-hhHHHH-HHHH
Confidence 4668999999998 588654 3344
No 50
>PRK01415 hypothetical protein; Validated
Probab=96.19 E-value=0.022 Score=40.71 Aligned_cols=81 Identities=16% Similarity=0.282 Sum_probs=41.4
Q ss_pred EeCCCCcccHHHHHhcCCCEEEEcccCcccccccChhhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHH--HHHcCC
Q psy7473 35 LGALPFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQR--ISKTGG 112 (136)
Q Consensus 35 ~g~~~~~~~~~~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~--~~~~~~ 112 (136)
.|..-.+.+...+.+..=..|||++.+.|. .. | |+ .+.- .+....+.++-+.+++ ....++
T Consensus 110 ~g~~i~p~e~~~ll~~~~~vvIDVRn~~E~---------~~-G----hi--~gAi-nip~~~f~e~~~~~~~~~~~~k~k 172 (247)
T PRK01415 110 KGEYIEPKDWDEFITKQDVIVIDTRNDYEV---------EV-G----TF--KSAI-NPNTKTFKQFPAWVQQNQELLKGK 172 (247)
T ss_pred CccccCHHHHHHHHhCCCcEEEECCCHHHH---------hc-C----Cc--CCCC-CCChHHHhhhHHHHhhhhhhcCCC
Confidence 444444445555555444578898887652 10 0 11 1111 1112223332222221 124668
Q ss_pred eEEEEcCCCCChHHHHHHHHhh
Q psy7473 113 TVYVHCKAGRTRSATLVGCYLM 134 (136)
Q Consensus 113 ~VlVHC~~G~~RS~~v~~ayLm 134 (136)
+|+++|++|+ || ..++++|.
T Consensus 173 ~Iv~yCtgGi-Rs-~kAa~~L~ 192 (247)
T PRK01415 173 KIAMVCTGGI-RC-EKSTSLLK 192 (247)
T ss_pred eEEEECCCCh-HH-HHHHHHHH
Confidence 9999999995 88 55556664
No 51
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=95.72 E-value=0.034 Score=41.78 Aligned_cols=23 Identities=35% Similarity=0.684 Sum_probs=18.0
Q ss_pred HcCCeEEEEcCCCCChHHHHHHH
Q psy7473 109 KTGGTVYVHCKAGRTRSATLVGC 131 (136)
Q Consensus 109 ~~~~~VlVHC~~G~~RS~~v~~a 131 (136)
.+|..|||||..|-+||+-+++.
T Consensus 229 ~~~~~Vlvh~~dGwDrt~q~~sL 251 (353)
T PF06602_consen 229 DEGSSVLVHCSDGWDRTSQLSSL 251 (353)
T ss_dssp TT--EEEEECTTSSSHHHHHHHH
T ss_pred ccCceEEEEcCCCCcccHHHHHH
Confidence 57889999999999999776654
No 52
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=95.67 E-value=0.047 Score=33.31 Aligned_cols=65 Identities=17% Similarity=0.169 Sum_probs=38.9
Q ss_pred HHHhcCCCEEEEcccCcccccccChhhhhhcCCe-EEEeeCCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCh
Q psy7473 46 KLLEENVKGVVSMNEDYELYFANGREEWNKVGVE-FLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTR 124 (136)
Q Consensus 46 ~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~i~-~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~R 124 (136)
.+...+-..+|+++++.|. + ..+-.. ..++|+.+......... ...+++++|+|..|. |
T Consensus 14 ~~~~~~~~~liDvR~~~e~------~--~~~i~~~~~~ip~~~~~~~~~~~~-----------~~~~~~ivv~C~~G~-r 73 (110)
T COG0607 14 LLLAGEDAVLLDVREPEEY------E--RGHIPGAAINIPLSELKAAENLLE-----------LPDDDPIVVYCASGV-R 73 (110)
T ss_pred HhhccCCCEEEeccChhHh------h--hcCCCcceeeeecccchhhhcccc-----------cCCCCeEEEEeCCCC-C
Confidence 3444667789999988553 1 112223 66777777542110000 556789999999994 8
Q ss_pred HHHHHH
Q psy7473 125 SATLVG 130 (136)
Q Consensus 125 S~~v~~ 130 (136)
|...+.
T Consensus 74 S~~aa~ 79 (110)
T COG0607 74 SAAAAA 79 (110)
T ss_pred hHHHHH
Confidence 855443
No 53
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=95.32 E-value=0.15 Score=30.80 Aligned_cols=21 Identities=19% Similarity=0.170 Sum_probs=15.7
Q ss_pred HcCCeEEEEcCCCCChHHHHHH
Q psy7473 109 KTGGTVYVHCKAGRTRSATLVG 130 (136)
Q Consensus 109 ~~~~~VlVHC~~G~~RS~~v~~ 130 (136)
..+++|+|+|..| +||...+.
T Consensus 59 ~~~~~ivv~C~~G-~rs~~aa~ 79 (100)
T cd01523 59 PDDQEVTVICAKE-GSSQFVAE 79 (100)
T ss_pred CCCCeEEEEcCCC-CcHHHHHH
Confidence 4568999999999 48855443
No 54
>KOG1089|consensus
Probab=95.06 E-value=0.061 Score=42.58 Aligned_cols=32 Identities=25% Similarity=0.457 Sum_probs=23.6
Q ss_pred HHHHHHHHHH-cCCeEEEEcCCCCChHHHHHHH
Q psy7473 100 GVDFIQRISK-TGGTVYVHCKAGRTRSATLVGC 131 (136)
Q Consensus 100 ~~~~i~~~~~-~~~~VlVHC~~G~~RS~~v~~a 131 (136)
...++.+.+. +|.+|||||..|.+||.-|+..
T Consensus 332 ~a~~ia~~l~~~~~sVlvhcsdGwDrT~qV~SL 364 (573)
T KOG1089|consen 332 AAAEIAKCLSSEGASVLVHCSDGWDRTCQVSSL 364 (573)
T ss_pred HHHHHHHHHHhCCCeEEEEccCCcchhHHHHHH
Confidence 3344444554 5689999999999999877654
No 55
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=94.89 E-value=0.079 Score=39.22 Aligned_cols=23 Identities=17% Similarity=0.384 Sum_probs=17.4
Q ss_pred cCCeEEEEcCCCCChHHHHHHHHhh
Q psy7473 110 TGGTVYVHCKAGRTRSATLVGCYLM 134 (136)
Q Consensus 110 ~~~~VlVHC~~G~~RS~~v~~ayLm 134 (136)
++++|+|+|.+|. ||. .++.+|.
T Consensus 170 kdk~IvvyC~~G~-Rs~-~aa~~L~ 192 (314)
T PRK00142 170 KDKKVVMYCTGGI-RCE-KASAWMK 192 (314)
T ss_pred CcCeEEEECCCCc-HHH-HHHHHHH
Confidence 5689999999994 884 4566664
No 56
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=94.53 E-value=0.28 Score=30.68 Aligned_cols=66 Identities=15% Similarity=0.161 Sum_probs=34.5
Q ss_pred CCEEEEcccCcccccccChhhhh-hcCC-eEEEeeCCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCCCCChHHHHH
Q psy7473 52 VKGVVSMNEDYELYFANGREEWN-KVGV-EFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLV 129 (136)
Q Consensus 52 i~~Vi~l~~~~~~~~~~~~~~~~-~~~i-~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~ 129 (136)
=..|||++++.+. + ...+ .-+++|..+........ .+...+......+.+|+++|..| .||...+
T Consensus 15 ~~~vIDvR~~~e~---------~~~ghIpgA~~ip~~~~~~~~~~~---~~~~~l~~~~~~~~~ivv~C~~G-~rs~~aa 81 (117)
T cd01522 15 QAVLVDVRTEAEW---------KFVGGVPDAVHVAWQVYPDMEINP---NFLAELEEKVGKDRPVLLLCRSG-NRSIAAA 81 (117)
T ss_pred CeEEEECCCHHHH---------hcccCCCCceecchhhccccccCH---HHHHHHHhhCCCCCeEEEEcCCC-ccHHHHH
Confidence 4568999987552 1 1111 12455655433111111 12223333335678999999998 5886544
Q ss_pred H
Q psy7473 130 G 130 (136)
Q Consensus 130 ~ 130 (136)
.
T Consensus 82 ~ 82 (117)
T cd01522 82 E 82 (117)
T ss_pred H
Confidence 3
No 57
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=94.18 E-value=0.27 Score=30.75 Aligned_cols=24 Identities=25% Similarity=0.031 Sum_probs=16.9
Q ss_pred HcCCeEEEEcCCCCChHHHHHHHHh
Q psy7473 109 KTGGTVYVHCKAGRTRSATLVGCYL 133 (136)
Q Consensus 109 ~~~~~VlVHC~~G~~RS~~v~~ayL 133 (136)
..+.+|+++|..| ++++..++..|
T Consensus 77 ~~~~~vv~~c~~g-~~~a~~~~~~l 100 (122)
T cd01448 77 SNDDTVVVYDDGG-GFFAARAWWTL 100 (122)
T ss_pred CCCCEEEEECCCC-CccHHHHHHHH
Confidence 4578999999997 45555555444
No 58
>PRK05320 rhodanese superfamily protein; Provisional
Probab=94.09 E-value=0.21 Score=35.92 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=17.2
Q ss_pred cCCeEEEEcCCCCChHHHHHHHHhh
Q psy7473 110 TGGTVYVHCKAGRTRSATLVGCYLM 134 (136)
Q Consensus 110 ~~~~VlVHC~~G~~RS~~v~~ayLm 134 (136)
.+++|+++|.+|. ||. .++.+|.
T Consensus 174 kdk~IvvyC~~G~-Rs~-~Aa~~L~ 196 (257)
T PRK05320 174 AGKTVVSFCTGGI-RCE-KAAIHMQ 196 (257)
T ss_pred CCCeEEEECCCCH-HHH-HHHHHHH
Confidence 5689999999994 884 4555554
No 59
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=93.88 E-value=0.49 Score=28.66 Aligned_cols=74 Identities=14% Similarity=0.159 Sum_probs=42.7
Q ss_pred hcCCCEEEEcccCcccccccChhhhhhcCCeEEEeeCCCC---CCCchHHHHHHHHHHHHHHHHcCCeEEEEcCCCCChH
Q psy7473 49 EENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDI---FDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRS 125 (136)
Q Consensus 49 ~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~i~~~~~p~~D~---~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS 125 (136)
+.+=..|||+++..+. . ..+-..-+++|.... ........+.............+..|+++|..|. |+
T Consensus 10 ~~~~~~liD~R~~~~~------~--~~hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~-~~ 80 (113)
T PF00581_consen 10 ENESVLLIDVRSPEEY------E--RGHIPGAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGW-RS 80 (113)
T ss_dssp TTTTEEEEEESSHHHH------H--HSBETTEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSC-HH
T ss_pred hCCCeEEEEeCCHHHH------H--cCCCCCCccccccccccccccccccccccccccccccccccccceeeeeccc-cc
Confidence 4456689999977542 0 111112367777432 2234444555555544444567779999997774 66
Q ss_pred HHHHHH
Q psy7473 126 ATLVGC 131 (136)
Q Consensus 126 ~~v~~a 131 (136)
...+++
T Consensus 81 ~~~~~~ 86 (113)
T PF00581_consen 81 GSAAAA 86 (113)
T ss_dssp HHHHHH
T ss_pred chhHHH
Confidence 665554
No 60
>KOG1530|consensus
Probab=93.87 E-value=0.12 Score=33.22 Aligned_cols=74 Identities=11% Similarity=0.084 Sum_probs=41.4
Q ss_pred cHHHHHhcCCCEEEEcccCcccccccChhhhhhcCCeEEEeeCCCCCC--CchHHHHHHHHHHHHHHH-HcCCeEEEEcC
Q psy7473 43 LTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFD--TPDQDKLERGVDFIQRIS-KTGGTVYVHCK 119 (136)
Q Consensus 43 ~~~~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~i~~~~~p~~D~~~--~~~~~~~~~~~~~i~~~~-~~~~~VlVHC~ 119 (136)
+...|.+.+-...||++++.|. . +.+--.-+++|..-.+. ......|. +-+.... .....++++|.
T Consensus 29 qvk~L~~~~~~~llDVRepeEf------k--~gh~~~siNiPy~~~~~~~~l~~~eF~---kqvg~~kp~~d~eiIf~C~ 97 (136)
T KOG1530|consen 29 QVKNLLQHPDVVLLDVREPEEF------K--QGHIPASINIPYMSRPGAGALKNPEFL---KQVGSSKPPHDKEIIFGCA 97 (136)
T ss_pred HHHHHhcCCCEEEEeecCHHHh------h--ccCCcceEeccccccccccccCCHHHH---HHhcccCCCCCCcEEEEec
Confidence 3445666776889999987663 1 11223456778754331 11222222 3332332 23458999999
Q ss_pred CCCChHHHH
Q psy7473 120 AGRTRSATL 128 (136)
Q Consensus 120 ~G~~RS~~v 128 (136)
.|. ||...
T Consensus 98 SG~-Rs~~A 105 (136)
T KOG1530|consen 98 SGV-RSLKA 105 (136)
T ss_pred cCc-chhHH
Confidence 995 88543
No 61
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=92.60 E-value=0.7 Score=29.32 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=15.2
Q ss_pred HHcCCeEEEEcCCCCChHHHHH
Q psy7473 108 SKTGGTVYVHCKAGRTRSATLV 129 (136)
Q Consensus 108 ~~~~~~VlVHC~~G~~RS~~v~ 129 (136)
..++.+|+|.|..|-.||...+
T Consensus 83 i~~~~~vvvyC~~~G~rs~~a~ 104 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQSLA 104 (128)
T ss_pred cCCCCeEEEEeCCCCccHHHHH
Confidence 3567899999975435776444
No 62
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=92.57 E-value=0.4 Score=28.92 Aligned_cols=18 Identities=28% Similarity=0.508 Sum_probs=14.2
Q ss_pred cCCeEEEEcCCCCChHHHH
Q psy7473 110 TGGTVYVHCKAGRTRSATL 128 (136)
Q Consensus 110 ~~~~VlVHC~~G~~RS~~v 128 (136)
.+.+|+++|..| .||...
T Consensus 57 ~~~~vv~~c~~g-~rs~~~ 74 (101)
T cd01528 57 PDKDIVVLCHHG-GRSMQV 74 (101)
T ss_pred CCCeEEEEeCCC-chHHHH
Confidence 468999999998 587544
No 63
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=92.21 E-value=0.26 Score=29.83 Aligned_cols=19 Identities=32% Similarity=0.452 Sum_probs=14.2
Q ss_pred HcCCeEEEEcCCCCChHHHH
Q psy7473 109 KTGGTVYVHCKAGRTRSATL 128 (136)
Q Consensus 109 ~~~~~VlVHC~~G~~RS~~v 128 (136)
..+.+|+++|..|. ||..+
T Consensus 64 ~~~~~ivv~c~~g~-~s~~~ 82 (106)
T cd01519 64 SKDKELIFYCKAGV-RSKAA 82 (106)
T ss_pred CCCCeEEEECCCcH-HHHHH
Confidence 34679999999985 77443
No 64
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=91.74 E-value=0.56 Score=28.09 Aligned_cols=20 Identities=20% Similarity=0.509 Sum_probs=14.6
Q ss_pred HcCCeEEEEcCCCCChHHHHH
Q psy7473 109 KTGGTVYVHCKAGRTRSATLV 129 (136)
Q Consensus 109 ~~~~~VlVHC~~G~~RS~~v~ 129 (136)
..+++|+++|..|. ||...+
T Consensus 52 ~~~~~iv~~c~~g~-~s~~~~ 71 (99)
T cd01527 52 VGANAIIFHCRSGM-RTQQNA 71 (99)
T ss_pred CCCCcEEEEeCCCc-hHHHHH
Confidence 45679999999984 665443
No 65
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=91.09 E-value=0.61 Score=30.50 Aligned_cols=50 Identities=20% Similarity=0.193 Sum_probs=31.7
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHc---CCeEEEEcCCCCCh----HHHHHHHHhhc
Q psy7473 85 TRDIFDTPDQDKLERGVDFIQRISKT---GGTVYVHCKAGRTR----SATLVGCYLMK 135 (136)
Q Consensus 85 ~~D~~~~~~~~~~~~~~~~i~~~~~~---~~~VlVHC~~G~~R----S~~v~~ayLm~ 135 (136)
..|.+ +....++-+++..+++.++. .++.+|||.+.-.+ ++.+++||+|.
T Consensus 38 ~~DFG-PlnL~~lyrfc~~l~~~L~~~~~~~k~iv~yts~d~~kRaNAA~Lig~y~Vi 94 (141)
T PF14671_consen 38 YADFG-PLNLAQLYRFCCKLNKKLKSPELKKKKIVHYTSSDPKKRANAAFLIGAYAVI 94 (141)
T ss_dssp SS-------HHHHHHHHHHHHHHHH-GGGTTSEEEEEE-S-HHHHHHHHHHHHHHHHH
T ss_pred cCcCC-CccHHHHHHHHHHHHHHHcCHHhcCCeEEEECCCChhHHHHHHHHHHHHHHH
Confidence 46666 88888899999988888754 57888888875443 47788888874
No 66
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=90.95 E-value=1.7 Score=32.72 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=15.6
Q ss_pred cCCeEEEEcCCCCChHHHHHH
Q psy7473 110 TGGTVYVHCKAGRTRSATLVG 130 (136)
Q Consensus 110 ~~~~VlVHC~~G~~RS~~v~~ 130 (136)
.+.+|+|+|..|-.||..++.
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa~ 107 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQQ 107 (345)
T ss_pred CCCeEEEEECCCChHHHHHHH
Confidence 578999999654469877653
No 67
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=90.32 E-value=2 Score=31.63 Aligned_cols=86 Identities=17% Similarity=0.215 Sum_probs=50.0
Q ss_pred ccCcEEEeCCCCcccHHHHHhcCCCEEEEcccCcccccccChhhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHHH
Q psy7473 29 IDENIILGALPFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRIS 108 (136)
Q Consensus 29 i~~~l~~g~~~~~~~~~~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~ 108 (136)
|.|.-.+|..-.+.+...+....=+.|||.+...|. --=-+.+. ..|..+.|.++-+.+++..
T Consensus 105 v~p~~~vG~yl~p~~wn~~l~D~~~vviDtRN~YE~----------------~iG~F~gA-v~p~~~tFrefP~~v~~~~ 167 (308)
T COG1054 105 VDPLENVGTYLSPKDWNELLSDPDVVVIDTRNDYEV----------------AIGHFEGA-VEPDIETFREFPAWVEENL 167 (308)
T ss_pred cCccccccCccCHHHHHHHhcCCCeEEEEcCcceeE----------------eeeeecCc-cCCChhhhhhhHHHHHHHH
Confidence 555555555555555555544344666666655442 10012222 3566677888888887655
Q ss_pred --HcCCeEEEEcCCCCChHHHHHHHHh
Q psy7473 109 --KTGGTVYVHCKAGRTRSATLVGCYL 133 (136)
Q Consensus 109 --~~~~~VlVHC~~G~~RS~~v~~ayL 133 (136)
..+++|...|++|+ |. =-+.+||
T Consensus 168 ~~~~~KkVvmyCTGGI-RC-EKas~~m 192 (308)
T COG1054 168 DLLKDKKVVMYCTGGI-RC-EKASAWM 192 (308)
T ss_pred HhccCCcEEEEcCCce-ee-hhhHHHH
Confidence 35689999999998 65 3333443
No 68
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=89.97 E-value=1.1 Score=26.08 Aligned_cols=19 Identities=37% Similarity=0.593 Sum_probs=13.5
Q ss_pred HcCCeEEEEcCCCCChHHHH
Q psy7473 109 KTGGTVYVHCKAGRTRSATL 128 (136)
Q Consensus 109 ~~~~~VlVHC~~G~~RS~~v 128 (136)
..+.+|+|+|..| .|+..+
T Consensus 54 ~~~~~iv~~c~~g-~~a~~~ 72 (100)
T smart00450 54 DKDKPVVVYCRSG-NRSAKA 72 (100)
T ss_pred CCCCeEEEEeCCC-cHHHHH
Confidence 5668999999766 466433
No 69
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=89.10 E-value=1.1 Score=27.43 Aligned_cols=17 Identities=24% Similarity=0.405 Sum_probs=13.5
Q ss_pred cCCeEEEEcCCCCChHHH
Q psy7473 110 TGGTVYVHCKAGRTRSAT 127 (136)
Q Consensus 110 ~~~~VlVHC~~G~~RS~~ 127 (136)
.+.+|+|+|..|. ||..
T Consensus 65 ~~~~ivv~C~~G~-rs~~ 81 (109)
T cd01533 65 PRTPIVVNCAGRT-RSII 81 (109)
T ss_pred CCCeEEEECCCCc-hHHH
Confidence 4579999999995 8843
No 70
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=88.96 E-value=1.1 Score=30.96 Aligned_cols=36 Identities=19% Similarity=0.343 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEEcCCCCChHHHHHHHH
Q psy7473 94 QDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCY 132 (136)
Q Consensus 94 ~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ay 132 (136)
.+.++++++.+.+...++++|++ | |.|+|+.++.-+
T Consensus 24 ~~~i~~a~~~l~~~l~~~~rI~~-~--G~GgSa~~A~~~ 59 (196)
T PRK10886 24 PDAISRAAMTLVQSLLNGNKILC-C--GNGTSAANAQHF 59 (196)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEE-E--ECcHHHHHHHHH
Confidence 46788999999999999999998 5 777887766543
No 71
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=88.95 E-value=1.3 Score=26.26 Aligned_cols=18 Identities=17% Similarity=0.278 Sum_probs=13.7
Q ss_pred cCCeEEEEcCCCCChHHHH
Q psy7473 110 TGGTVYVHCKAGRTRSATL 128 (136)
Q Consensus 110 ~~~~VlVHC~~G~~RS~~v 128 (136)
.+.+|+++|..|. ||...
T Consensus 55 ~~~~iv~~c~~G~-rs~~a 72 (95)
T cd01534 55 RGARIVLADDDGV-RADMT 72 (95)
T ss_pred CCCeEEEECCCCC-hHHHH
Confidence 3579999999984 77543
No 72
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=88.94 E-value=2 Score=27.03 Aligned_cols=43 Identities=12% Similarity=0.116 Sum_probs=28.6
Q ss_pred HHHHhcCCCEEEEcccCccccccc-C----hhhhhhcCCeEEEeeCCC
Q psy7473 45 NKLLEENVKGVVSMNEDYELYFAN-G----REEWNKVGVEFLQLSTRD 87 (136)
Q Consensus 45 ~~l~~~gi~~Vi~l~~~~~~~~~~-~----~~~~~~~~i~~~~~p~~D 87 (136)
+.|++.||+.+||++..+....+. . .......||.|.|+|-..
T Consensus 7 ~~l~~~~i~~lVDVR~~P~S~~~~~~k~~l~~~l~~~gi~Y~~~~~Lg 54 (122)
T PF04343_consen 7 DLLKKNGIRVLVDVRLWPRSRKPGFNKEDLASFLEEAGIEYVWLPELG 54 (122)
T ss_pred HHHHHCCCeEEEEECCCCCCCCCCCCHHHHHHHHHHCCceEeechhhc
Confidence 467889999999988765421111 1 233456899999988643
No 73
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=88.94 E-value=0.67 Score=33.23 Aligned_cols=83 Identities=17% Similarity=0.365 Sum_probs=51.3
Q ss_pred cEEEeCC-CCcccHHHHHhcCCCEEEEcccCcccccc-cChhhhhhcCCeEEEeeCCCCCC-----CchHHHHHHHHHHH
Q psy7473 32 NIILGAL-PFKRLTNKLLEENVKGVVSMNEDYELYFA-NGREEWNKVGVEFLQLSTRDIFD-----TPDQDKLERGVDFI 104 (136)
Q Consensus 32 ~l~~g~~-~~~~~~~~l~~~gi~~Vi~l~~~~~~~~~-~~~~~~~~~~i~~~~~p~~D~~~-----~~~~~~~~~~~~~i 104 (136)
.+..|++ ......+.+++++|+.|||.+.+.-.... +..+.....|+.|+++--+.... --..+.++++++.+
T Consensus 46 ~v~~G~lg~~~~l~~~l~~~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~eRp~~~~~~~~~~~~v~~~~eA~~~l 125 (249)
T PF02571_consen 46 EVRVGRLGDEEGLAEFLRENGIDAVIDATHPFAAEISQNAIEACRELGIPYLRFERPSWQPEPDDNWHYVDSYEEAAELL 125 (249)
T ss_pred eEEECCCCCHHHHHHHHHhCCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEEEcCCcccCCCCeEEEeCCHHHHHHHH
Confidence 5888998 44445566777999999999987532111 11344567899998885444331 12234566666665
Q ss_pred HHHHHcCCeEEE
Q psy7473 105 QRISKTGGTVYV 116 (136)
Q Consensus 105 ~~~~~~~~~VlV 116 (136)
.+. .+++||.
T Consensus 126 ~~~--~~~~ifl 135 (249)
T PF02571_consen 126 KEL--GGGRIFL 135 (249)
T ss_pred hhc--CCCCEEE
Confidence 332 2367775
No 74
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=88.82 E-value=1.4 Score=32.18 Aligned_cols=18 Identities=28% Similarity=0.643 Sum_probs=15.8
Q ss_pred eEEEEcCCCCChHHHHHH
Q psy7473 113 TVYVHCKAGRTRSATLVG 130 (136)
Q Consensus 113 ~VlVHC~~G~~RS~~v~~ 130 (136)
.|-|=|++|+.||.+++=
T Consensus 244 tIaiGCTGG~HRSV~iae 261 (284)
T PF03668_consen 244 TIAIGCTGGQHRSVAIAE 261 (284)
T ss_pred EEEEEcCCCcCcHHHHHH
Confidence 688999999999988764
No 75
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=88.71 E-value=1.2 Score=32.32 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHH----HcCC---eEEEEcCCCCChHHHHHH
Q psy7473 96 KLERGVDFIQRIS----KTGG---TVYVHCKAGRTRSATLVG 130 (136)
Q Consensus 96 ~~~~~~~~i~~~~----~~~~---~VlVHC~~G~~RS~~v~~ 130 (136)
.++++.++++..+ ++|+ .|-|=|++|..||.+++=
T Consensus 221 f~~~l~~~l~~~LP~y~~egks~lTIaIGCTGGqHRSV~iae 262 (286)
T COG1660 221 FYEKLRDLLEFWLPRYEKEGKSYLTIAIGCTGGQHRSVYIAE 262 (286)
T ss_pred HHHHHHHHHHHHhHHHHhcCCeEEEEEEccCCCccchHHHHH
Confidence 3444444444433 4555 577899999999988864
No 76
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=87.79 E-value=4.5 Score=24.82 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=14.1
Q ss_pred cCCeEEEEcCCCCChHHHHHH
Q psy7473 110 TGGTVYVHCKAGRTRSATLVG 130 (136)
Q Consensus 110 ~~~~VlVHC~~G~~RS~~v~~ 130 (136)
.+.+|++||..+-.|+...+.
T Consensus 61 ~~~~iv~yC~~~~~r~~~aa~ 81 (113)
T cd01531 61 KKDTVVFHCALSQVRGPSAAR 81 (113)
T ss_pred CCCeEEEEeecCCcchHHHHH
Confidence 357999999844357755443
No 77
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=87.40 E-value=1.3 Score=29.77 Aligned_cols=32 Identities=25% Similarity=0.413 Sum_probs=24.3
Q ss_pred chHHHHHHHHHHHHHHHHcCCeEEEEcCCCCChHH
Q psy7473 92 PDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSA 126 (136)
Q Consensus 92 ~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~ 126 (136)
...+.++++.+.|-+....|++||+ |..| +|.
T Consensus 22 ~l~~~I~~aa~~i~~~l~~G~Kvl~-cGNG--gSa 53 (176)
T COG0279 22 ALIEAIERAAQLLVQSLLNGNKVLA-CGNG--GSA 53 (176)
T ss_pred HhHHHHHHHHHHHHHHHHcCCEEEE-ECCC--cch
Confidence 3456788888888889999999998 7444 554
No 78
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=87.15 E-value=2.4 Score=28.20 Aligned_cols=21 Identities=14% Similarity=0.017 Sum_probs=16.3
Q ss_pred HcCCeEEEEcCCCCChHHHHH
Q psy7473 109 KTGGTVYVHCKAGRTRSATLV 129 (136)
Q Consensus 109 ~~~~~VlVHC~~G~~RS~~v~ 129 (136)
..+.+|++.|..|..||...+
T Consensus 114 ~~d~~IVvYC~~G~~~S~~aa 134 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWNAA 134 (162)
T ss_pred CCCCEEEEEECCCCHHHHHHH
Confidence 466899999999877776543
No 79
>PRK13938 phosphoheptose isomerase; Provisional
Probab=86.83 E-value=2 Score=29.61 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=30.5
Q ss_pred CchHHHHHHHHHHHHHHHHcCCeEEEEcCCCCChHHHHHHHH
Q psy7473 91 TPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCY 132 (136)
Q Consensus 91 ~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ay 132 (136)
....+.+.++.+.+.+.+++|++|++ | |.|+|+.++.-+
T Consensus 25 ~~~~~~~~~~a~~~~~~l~~g~rI~i-~--G~G~S~~~A~~f 63 (196)
T PRK13938 25 RVLLEAARAIGDRLIAGYRAGARVFM-C--GNGGSAADAQHF 63 (196)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCEEEE-E--eCcHHHHHHHHH
Confidence 45667888888999899999999988 5 667887766543
No 80
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=86.36 E-value=3.7 Score=30.50 Aligned_cols=20 Identities=25% Similarity=0.268 Sum_probs=13.2
Q ss_pred CCeEEEEcCCCCChHHHHHH
Q psy7473 111 GGTVYVHCKAGRTRSATLVG 130 (136)
Q Consensus 111 ~~~VlVHC~~G~~RS~~v~~ 130 (136)
+..|+|+|..|-.||..++.
T Consensus 74 ~~~vvvyC~~gG~RS~~aa~ 93 (311)
T TIGR03167 74 PPQPLLYCWRGGMRSGSLAW 93 (311)
T ss_pred CCcEEEEECCCChHHHHHHH
Confidence 34599999644368876543
No 81
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=86.33 E-value=2.2 Score=31.27 Aligned_cols=36 Identities=22% Similarity=0.457 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHH----HcCC---eEEEEcCCCCChHHHHHH
Q psy7473 95 DKLERGVDFIQRIS----KTGG---TVYVHCKAGRTRSATLVG 130 (136)
Q Consensus 95 ~~~~~~~~~i~~~~----~~~~---~VlVHC~~G~~RS~~v~~ 130 (136)
+.++.+.++++..+ ++|+ .|-|=|++|..||.+++=
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~igCtGG~HRSV~~~e 264 (288)
T PRK05416 222 EFLDKIRDLLEFWLPGYEREGKSYLTIAIGCTGGQHRSVAIAE 264 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEEecCCCcccHHHHHH
Confidence 34445455554433 3443 488999999999988763
No 82
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=86.26 E-value=1.6 Score=31.34 Aligned_cols=81 Identities=17% Similarity=0.304 Sum_probs=49.8
Q ss_pred cEEEeCC-CCcccHHHHHhcCCCEEEEcccCcccccc-cChhhhhhcCCeEEEeeCCCCCC-----CchHHHHHHHHHHH
Q psy7473 32 NIILGAL-PFKRLTNKLLEENVKGVVSMNEDYELYFA-NGREEWNKVGVEFLQLSTRDIFD-----TPDQDKLERGVDFI 104 (136)
Q Consensus 32 ~l~~g~~-~~~~~~~~l~~~gi~~Vi~l~~~~~~~~~-~~~~~~~~~~i~~~~~p~~D~~~-----~~~~~~~~~~~~~i 104 (136)
.+..|++ ....-.+.+++++|+.|||.+.+.-.... +..+.++..++.|+++--+.... --..+.++++++.+
T Consensus 45 ~v~~G~l~~~~~l~~~l~~~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~eR~~~~~~~~~~~~~v~s~~~a~~~l 124 (248)
T PRK08057 45 PVRVGGFGGAEGLAAYLREEGIDLVIDATHPYAAQISANAAAACRALGIPYLRLERPSWLPQPGDRWIEVDDIEEAAEAL 124 (248)
T ss_pred eEEECCCCCHHHHHHHHHHCCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEeCCCcCCCCCCCEEEECCHHHHHHHh
Confidence 5778888 44445566778999999999987642111 11344567899998886443211 11234566666665
Q ss_pred HHHHHcCCeEEE
Q psy7473 105 QRISKTGGTVYV 116 (136)
Q Consensus 105 ~~~~~~~~~VlV 116 (136)
.+. ++||.
T Consensus 125 ~~~----~~vll 132 (248)
T PRK08057 125 APF----RRVLL 132 (248)
T ss_pred hcc----CCEEE
Confidence 433 56665
No 83
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=86.22 E-value=1.9 Score=26.34 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=14.2
Q ss_pred cCCeEEEEcCCCCChHHHHH
Q psy7473 110 TGGTVYVHCKAGRTRSATLV 129 (136)
Q Consensus 110 ~~~~VlVHC~~G~~RS~~v~ 129 (136)
.+.+|+++|..| .||...+
T Consensus 57 ~~~~vvlyC~~G-~rS~~aa 75 (101)
T TIGR02981 57 KNDTVKLYCNAG-RQSGMAK 75 (101)
T ss_pred CCCeEEEEeCCC-HHHHHHH
Confidence 456899999999 4775554
No 84
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=86.02 E-value=1.9 Score=32.70 Aligned_cols=20 Identities=35% Similarity=0.401 Sum_probs=14.6
Q ss_pred CeEEEEcCCCCChHHHHHHHHh
Q psy7473 112 GTVYVHCKAGRTRSATLVGCYL 133 (136)
Q Consensus 112 ~~VlVHC~~G~~RS~~v~~ayL 133 (136)
.+|+|||..| .||... +..|
T Consensus 333 ~~Ivv~C~sG-~RS~~A-a~~L 352 (370)
T PRK05600 333 DNVVVYCASG-IRSADF-IEKY 352 (370)
T ss_pred CcEEEECCCC-hhHHHH-HHHH
Confidence 3899999999 588654 4444
No 85
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=85.86 E-value=1.2 Score=27.39 Aligned_cols=20 Identities=25% Similarity=0.443 Sum_probs=14.8
Q ss_pred HcCCeEEEEcCCCCChHHHHH
Q psy7473 109 KTGGTVYVHCKAGRTRSATLV 129 (136)
Q Consensus 109 ~~~~~VlVHC~~G~~RS~~v~ 129 (136)
..+.+|+++|..|. ||..++
T Consensus 76 ~~~~~iv~yc~~g~-~s~~~~ 95 (118)
T cd01449 76 TPDKPVIVYCGSGV-TACVLL 95 (118)
T ss_pred CCCCCEEEECCcHH-HHHHHH
Confidence 45689999999884 775543
No 86
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=84.92 E-value=6.8 Score=24.01 Aligned_cols=18 Identities=11% Similarity=0.148 Sum_probs=13.1
Q ss_pred CCeEEEEcCCCCChHHHH
Q psy7473 111 GGTVYVHCKAGRTRSATL 128 (136)
Q Consensus 111 ~~~VlVHC~~G~~RS~~v 128 (136)
..+|++||..|-.||...
T Consensus 66 ~~~iv~~C~~~g~rs~~a 83 (113)
T cd01443 66 VKLAIFYCGSSQGRGPRA 83 (113)
T ss_pred CCEEEEECCCCCcccHHH
Confidence 468999999754576543
No 87
>PRK07411 hypothetical protein; Validated
Probab=83.61 E-value=2.6 Score=32.25 Aligned_cols=18 Identities=44% Similarity=0.750 Sum_probs=14.2
Q ss_pred cCCeEEEEcCCCCChHHHH
Q psy7473 110 TGGTVYVHCKAGRTRSATL 128 (136)
Q Consensus 110 ~~~~VlVHC~~G~~RS~~v 128 (136)
.+++|+|+|..|. ||...
T Consensus 341 ~d~~IVvyC~~G~-RS~~a 358 (390)
T PRK07411 341 NGHRLIAHCKMGG-RSAKA 358 (390)
T ss_pred CCCeEEEECCCCH-HHHHH
Confidence 4679999999985 88553
No 88
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=82.93 E-value=8.2 Score=23.37 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=13.6
Q ss_pred HcCCeEEEEcCCCCChHHH
Q psy7473 109 KTGGTVYVHCKAGRTRSAT 127 (136)
Q Consensus 109 ~~~~~VlVHC~~G~~RS~~ 127 (136)
..+.+++|+|..|. ||..
T Consensus 56 ~~~~~ivv~c~~g~-~s~~ 73 (108)
T PRK00162 56 DFDTPVMVMCYHGN-SSQG 73 (108)
T ss_pred CCCCCEEEEeCCCC-CHHH
Confidence 45679999999885 6643
No 89
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=80.72 E-value=0.94 Score=27.66 Aligned_cols=10 Identities=40% Similarity=1.185 Sum_probs=8.9
Q ss_pred CeEEEEcCCC
Q psy7473 112 GTVYVHCKAG 121 (136)
Q Consensus 112 ~~VlVHC~~G 121 (136)
.+|+|||.-|
T Consensus 86 ~~~yIhCsIG 95 (97)
T PF10302_consen 86 PRIYIHCSIG 95 (97)
T ss_pred CeEEEEEecc
Confidence 6999999877
No 90
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=79.67 E-value=1.2 Score=32.25 Aligned_cols=19 Identities=16% Similarity=0.363 Sum_probs=14.2
Q ss_pred HcCCeEEEEcCCCCChHHHH
Q psy7473 109 KTGGTVYVHCKAGRTRSATL 128 (136)
Q Consensus 109 ~~~~~VlVHC~~G~~RS~~v 128 (136)
..+++|+++|..|. ||+.+
T Consensus 229 ~~~~~ii~yC~~G~-~A~~~ 247 (281)
T PRK11493 229 SFDRPIIASCGSGV-TAAVV 247 (281)
T ss_pred CCCCCEEEECCcHH-HHHHH
Confidence 45679999999886 65443
No 91
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=79.53 E-value=4.7 Score=24.77 Aligned_cols=20 Identities=30% Similarity=0.428 Sum_probs=14.5
Q ss_pred cCCeEEEEcCCCCChHHHHHH
Q psy7473 110 TGGTVYVHCKAGRTRSATLVG 130 (136)
Q Consensus 110 ~~~~VlVHC~~G~~RS~~v~~ 130 (136)
.+.+|+++|..| .||...+.
T Consensus 59 ~~~~IVlyC~~G-~rS~~aa~ 78 (104)
T PRK10287 59 KNDTVKLYCNAG-RQSGQAKE 78 (104)
T ss_pred CCCeEEEEeCCC-hHHHHHHH
Confidence 456899999988 47755543
No 92
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=79.12 E-value=4.6 Score=28.07 Aligned_cols=35 Identities=23% Similarity=0.440 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEEcCCCCChHHHHHHHHhhc
Q psy7473 95 DKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLMK 135 (136)
Q Consensus 95 ~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~ 135 (136)
+.|.++++.|.+ ..|+|+| .|+||||.++-++-|+
T Consensus 26 ~~~~~a~~~i~~---~~gkv~V---~G~GkSG~Igkk~Aa~ 60 (202)
T COG0794 26 EDFVRAVELILE---CKGKVFV---TGVGKSGLIGKKFAAR 60 (202)
T ss_pred HHHHHHHHHHHh---cCCcEEE---EcCChhHHHHHHHHHH
Confidence 345555554433 3677877 4999999998776654
No 93
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=78.58 E-value=4.6 Score=26.33 Aligned_cols=26 Identities=15% Similarity=0.248 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHcCCeEEEEcCCC
Q psy7473 96 KLERGVDFIQRISKTGGTVYVHCKAG 121 (136)
Q Consensus 96 ~~~~~~~~i~~~~~~~~~VlVHC~~G 121 (136)
...-+++.++++.++|.+|+|+|..-
T Consensus 14 ~~~~~c~L~~ka~~~g~rv~I~~~d~ 39 (142)
T PRK05728 14 LEALLCELAEKALRAGWRVLVQCEDE 39 (142)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 56678889999999999999999643
No 94
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=78.30 E-value=3.8 Score=24.17 Aligned_cols=24 Identities=17% Similarity=0.083 Sum_probs=15.4
Q ss_pred cCCeEEEEcCCCCChHHHHHHHHh
Q psy7473 110 TGGTVYVHCKAGRTRSATLVGCYL 133 (136)
Q Consensus 110 ~~~~VlVHC~~G~~RS~~v~~ayL 133 (136)
++.+|++.|..|...++..++..|
T Consensus 49 ~~~~ivl~c~~G~~~~s~~aa~~L 72 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRAARRL 72 (92)
T ss_pred CCCeEEEEeCCCCchHHHHHHHHH
Confidence 367999999998533334444443
No 95
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=77.76 E-value=3.8 Score=29.72 Aligned_cols=40 Identities=15% Similarity=0.387 Sum_probs=27.5
Q ss_pred hhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEc
Q psy7473 71 EEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHC 118 (136)
Q Consensus 71 ~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC 118 (136)
..++..|+.|.- |++.+. +++.++.++++.+..+||+||.
T Consensus 229 ~lFe~LG~~Y~G-PiDGHd-------l~~Li~~l~~~K~~~gPvllHV 268 (270)
T PF13292_consen 229 NLFEELGFDYIG-PIDGHD-------LEELIEVLENAKDIDGPVLLHV 268 (270)
T ss_dssp CCCHHCT-EEEE-EEETT--------HHHHHHHHHHHCCSSSEEEEEE
T ss_pred HHHHHcCCeEEe-ccCCCC-------HHHHHHHHHHHhcCCCCEEEEE
Confidence 456778888863 666543 5666666777777789999996
No 96
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=77.50 E-value=3.2 Score=27.23 Aligned_cols=22 Identities=14% Similarity=0.422 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHcCCeEEEEcCC
Q psy7473 99 RGVDFIQRISKTGGTVYVHCKA 120 (136)
Q Consensus 99 ~~~~~i~~~~~~~~~VlVHC~~ 120 (136)
-++.+++++..+|.+|+|+|..
T Consensus 17 ~~c~L~~k~~~~G~rvlI~~~d 38 (144)
T COG2927 17 AACRLAEKAWRSGWRVLIQCED 38 (144)
T ss_pred HHHHHHHHHHHcCCeEEEEeCC
Confidence 7889999999999999999953
No 97
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=77.23 E-value=3 Score=24.75 Aligned_cols=23 Identities=9% Similarity=0.047 Sum_probs=16.2
Q ss_pred HcCCeEEEEcCCCCChHHHHHHHHh
Q psy7473 109 KTGGTVYVHCKAGRTRSATLVGCYL 133 (136)
Q Consensus 109 ~~~~~VlVHC~~G~~RS~~v~~ayL 133 (136)
..+.+|+|+|..| +||... +.+|
T Consensus 54 ~~~~~ivv~c~~g-~~s~~~-~~~l 76 (96)
T cd01529 54 GRATRYVLTCDGS-LLARFA-AQEL 76 (96)
T ss_pred CCCCCEEEEeCCh-HHHHHH-HHHH
Confidence 4568999999987 587554 3344
No 98
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=77.11 E-value=6 Score=25.44 Aligned_cols=33 Identities=30% Similarity=0.745 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEEEEcCCCCChHHHH
Q psy7473 93 DQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATL 128 (136)
Q Consensus 93 ~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v 128 (136)
..+.+.++.+.+.+..++|++|++ |-.| -|+.+
T Consensus 17 ~~~~i~~aa~~i~~~~~~gg~i~~-~G~G--~S~~~ 49 (138)
T PF13580_consen 17 QAEAIEKAADLIAEALRNGGRIFV-CGNG--HSAAI 49 (138)
T ss_dssp SHHHHHHHHHHHHHHHHTT--EEE-EEST--HHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEE-EcCc--hhhhH
Confidence 356788999999999999888888 6544 55444
No 99
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=76.98 E-value=1.8 Score=31.77 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=13.9
Q ss_pred HHcCCeEEEEcCCCCChH
Q psy7473 108 SKTGGTVYVHCKAGRTRS 125 (136)
Q Consensus 108 ~~~~~~VlVHC~~G~~RS 125 (136)
+..+++|.++|..|..=|
T Consensus 231 i~~~~~vI~yCgsG~~As 248 (285)
T COG2897 231 IDPDKEVIVYCGSGVRAS 248 (285)
T ss_pred CCCCCCEEEEcCCchHHH
Confidence 467789999999886333
No 100
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=76.84 E-value=3.7 Score=29.58 Aligned_cols=84 Identities=13% Similarity=0.213 Sum_probs=47.4
Q ss_pred EEEeCCCCcccHHHHHhcCCCEEEEcccCcccccc-cChhhhhhcCCeEEEeeCCC---CCCCchHHHHHHHHHHHHHHH
Q psy7473 33 IILGALPFKRLTNKLLEENVKGVVSMNEDYELYFA-NGREEWNKVGVEFLQLSTRD---IFDTPDQDKLERGVDFIQRIS 108 (136)
Q Consensus 33 l~~g~~~~~~~~~~l~~~gi~~Vi~l~~~~~~~~~-~~~~~~~~~~i~~~~~p~~D---~~~~~~~~~~~~~~~~i~~~~ 108 (136)
+..|.+........+.+.+++.|||.+.+.-.... +........|+.|+++--+. .+.....+.++++++.+.+..
T Consensus 47 v~~g~l~~~~l~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~eR~~~~~~~~~~~v~~~~ea~~~~~~~~ 126 (256)
T TIGR00715 47 VHTGALDPQELREFLKRHSIDILVDATHPFAAQITTNATAVCKELGIPYVRFERPPLALGKNIIEVPDIEEATRVAYQPY 126 (256)
T ss_pred EEECCCCHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEEECCCCCCCCCeEEeCCHHHHHHHhhhcc
Confidence 55566544443356777999999999987532111 12344567899999884332 111222345666666553311
Q ss_pred HcCCeEEE
Q psy7473 109 KTGGTVYV 116 (136)
Q Consensus 109 ~~~~~VlV 116 (136)
..+++||.
T Consensus 127 ~~~~~i~l 134 (256)
T TIGR00715 127 LRGKRVFL 134 (256)
T ss_pred ccCCcEEE
Confidence 13456665
No 101
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=76.37 E-value=3.8 Score=24.34 Aligned_cols=18 Identities=28% Similarity=0.350 Sum_probs=14.0
Q ss_pred HcCCeEEEEcCCCCChHHH
Q psy7473 109 KTGGTVYVHCKAGRTRSAT 127 (136)
Q Consensus 109 ~~~~~VlVHC~~G~~RS~~ 127 (136)
..+.+|+|+|..| .||..
T Consensus 59 ~~~~~ivv~c~~g-~~s~~ 76 (103)
T cd01447 59 AEDKPFVFYCASG-WRSAL 76 (103)
T ss_pred CCCCeEEEEcCCC-CcHHH
Confidence 5678999999988 57744
No 102
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=75.78 E-value=4.2 Score=23.87 Aligned_cols=20 Identities=35% Similarity=0.418 Sum_probs=14.4
Q ss_pred HHcCCeEEEEcCCCCChHHHH
Q psy7473 108 SKTGGTVYVHCKAGRTRSATL 128 (136)
Q Consensus 108 ~~~~~~VlVHC~~G~~RS~~v 128 (136)
...+.+|+|+|..| .||...
T Consensus 53 ~~~~~~ivv~c~~g-~~s~~a 72 (96)
T cd01444 53 LDRDRPVVVYCYHG-NSSAQL 72 (96)
T ss_pred cCCCCCEEEEeCCC-ChHHHH
Confidence 35678999999977 366443
No 103
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=75.34 E-value=4.2 Score=25.40 Aligned_cols=19 Identities=32% Similarity=0.649 Sum_probs=14.7
Q ss_pred HcCCeEEEEcCCCCChHHHH
Q psy7473 109 KTGGTVYVHCKAGRTRSATL 128 (136)
Q Consensus 109 ~~~~~VlVHC~~G~~RS~~v 128 (136)
..+++|+++|..|. ||...
T Consensus 70 ~~~~~ivv~C~~G~-rs~~a 88 (122)
T cd01526 70 DKDSPIYVVCRRGN-DSQTA 88 (122)
T ss_pred CCCCcEEEECCCCC-cHHHH
Confidence 45789999999994 88533
No 104
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=74.24 E-value=5.8 Score=25.64 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHcCCeEEEEcCC
Q psy7473 97 LERGVDFIQRISKTGGTVYVHCKA 120 (136)
Q Consensus 97 ~~~~~~~i~~~~~~~~~VlVHC~~ 120 (136)
..-+++.++++.++|++|+|+|..
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d 38 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPD 38 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SS
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCC
Confidence 577788999999999999999964
No 105
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=72.77 E-value=8.3 Score=25.61 Aligned_cols=27 Identities=7% Similarity=-0.081 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEEcCCC
Q psy7473 95 DKLERGVDFIQRISKTGGTVYVHCKAG 121 (136)
Q Consensus 95 ~~~~~~~~~i~~~~~~~~~VlVHC~~G 121 (136)
....-+++.++++.++|.+|+|+|...
T Consensus 13 ~~~~~acrL~~Ka~~~G~rv~I~~~d~ 39 (154)
T PRK06646 13 LLLKSILLLIEKCYYSDLKSVILTADA 39 (154)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 356778889999999999999999654
No 106
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=72.09 E-value=6 Score=24.83 Aligned_cols=21 Identities=19% Similarity=0.476 Sum_probs=15.0
Q ss_pred HcCCeEEEEcC-CCCChHHHHHH
Q psy7473 109 KTGGTVYVHCK-AGRTRSATLVG 130 (136)
Q Consensus 109 ~~~~~VlVHC~-~G~~RS~~v~~ 130 (136)
..+.+|++||. +| .||+..+.
T Consensus 66 ~~~~~vv~yC~~sg-~rs~~aa~ 87 (121)
T cd01530 66 KKRRVLIFHCEFSS-KRGPRMAR 87 (121)
T ss_pred CCCCEEEEECCCcc-ccHHHHHH
Confidence 45689999997 66 58755433
No 107
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=72.04 E-value=25 Score=23.07 Aligned_cols=20 Identities=30% Similarity=0.350 Sum_probs=17.1
Q ss_pred HHHHhcCCCEEEEcccCccc
Q psy7473 45 NKLLEENVKGVVSMNEDYEL 64 (136)
Q Consensus 45 ~~l~~~gi~~Vi~l~~~~~~ 64 (136)
..|++.|++||+-++.+.+.
T Consensus 78 ~~l~~~GFkhV~~lT~D~~W 97 (142)
T PF10673_consen 78 EELKESGFKHVFYLTSDSEW 97 (142)
T ss_pred HHHHhcCCcEEEEEecCccc
Confidence 46888999999999998764
No 108
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=71.74 E-value=8.4 Score=29.32 Aligned_cols=15 Identities=40% Similarity=0.729 Sum_probs=11.8
Q ss_pred HHcCCeEEEEcCCCC
Q psy7473 108 SKTGGTVYVHCKAGR 122 (136)
Q Consensus 108 ~~~~~~VlVHC~~G~ 122 (136)
+.+|..||.||.+|-
T Consensus 164 I~dg~~ILThcnsg~ 178 (363)
T PRK05772 164 LNDGDTVLTQCNAGG 178 (363)
T ss_pred cCCCCEEEEecCCcc
Confidence 346789999998873
No 109
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=71.32 E-value=6.4 Score=29.64 Aligned_cols=17 Identities=47% Similarity=0.862 Sum_probs=14.0
Q ss_pred HcCCeEEEEcCCCCChH
Q psy7473 109 KTGGTVYVHCKAGRTRS 125 (136)
Q Consensus 109 ~~~~~VlVHC~~G~~RS 125 (136)
..|..||.||.+|..+|
T Consensus 146 ~~g~~ILThc~sg~lat 162 (339)
T PRK06036 146 EDGDTVLTHCNAGRLAC 162 (339)
T ss_pred cCCCEEEEecCCccccc
Confidence 46789999999997665
No 110
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=70.16 E-value=6.5 Score=23.50 Aligned_cols=19 Identities=11% Similarity=0.291 Sum_probs=14.4
Q ss_pred CCeEEEEcCCCCChHHHHHH
Q psy7473 111 GGTVYVHCKAGRTRSATLVG 130 (136)
Q Consensus 111 ~~~VlVHC~~G~~RS~~v~~ 130 (136)
+.+|+++|..|. ||..++.
T Consensus 65 ~~~vv~~c~~g~-~s~~~a~ 83 (105)
T cd01525 65 GKIIVIVSHSHK-HAALFAA 83 (105)
T ss_pred CCeEEEEeCCCc-cHHHHHH
Confidence 578999999985 7765443
No 111
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=69.20 E-value=9.8 Score=27.47 Aligned_cols=81 Identities=16% Similarity=0.287 Sum_probs=46.4
Q ss_pred EEEeCCCCcc-cHHHHHhcCCCEEEEcccCcccccc-cChhhhhhcCCeEEEeeCCCCCC-Cc---hHHHHHHHHHHHHH
Q psy7473 33 IILGALPFKR-LTNKLLEENVKGVVSMNEDYELYFA-NGREEWNKVGVEFLQLSTRDIFD-TP---DQDKLERGVDFIQR 106 (136)
Q Consensus 33 l~~g~~~~~~-~~~~l~~~gi~~Vi~l~~~~~~~~~-~~~~~~~~~~i~~~~~p~~D~~~-~~---~~~~~~~~~~~i~~ 106 (136)
.-+|+..... ....|++++|+.+||-+.+.-.... +-....+..|+.|+++--+.... .+ ....++++++.+.
T Consensus 47 ~~~~G~l~~e~l~~~l~e~~i~llIDATHPyAa~iS~Na~~aake~gipy~r~eRP~~~~~gd~~~~V~d~~ea~~~~~- 125 (257)
T COG2099 47 VRVGGFLGAEGLAAFLREEGIDLLIDATHPYAARISQNAARAAKETGIPYLRLERPPWAPNGDNWIEVADIEEAAEAAK- 125 (257)
T ss_pred eeecCcCCHHHHHHHHHHcCCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEEECCccccCCCceEEecCHHHHHHHHh-
Confidence 4555555554 4456788999999999887532111 11234566899999886554432 12 2344555555443
Q ss_pred HHHcCCeEEE
Q psy7473 107 ISKTGGTVYV 116 (136)
Q Consensus 107 ~~~~~~~VlV 116 (136)
+.+++|+.
T Consensus 126 --~~~~rVfl 133 (257)
T COG2099 126 --QLGRRVFL 133 (257)
T ss_pred --ccCCcEEE
Confidence 34455554
No 112
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=68.68 E-value=16 Score=26.21 Aligned_cols=70 Identities=10% Similarity=0.132 Sum_probs=41.8
Q ss_pred CCCCcccHHHHHhcCCCEEEEcccCcccccccChhhhhhcCCeEEEeeCCCCCCC-chHHHHHHHHHHHHHH
Q psy7473 37 ALPFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDT-PDQDKLERGVDFIQRI 107 (136)
Q Consensus 37 ~~~~~~~~~~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~i~~~~~p~~D~~~~-~~~~~~~~~~~~i~~~ 107 (136)
.+....+...+++++|+.+|.=.+... ......+.....|+..+-+.-+..+.. .....++++.+++.+.
T Consensus 176 Pfs~e~n~aL~~~~~i~~lVtK~SG~~-g~~eKi~AA~~lgi~vivI~RP~~~~~~~~~~~~~e~~~~l~~~ 246 (248)
T PRK08057 176 PFSLELERALLRQHRIDVVVTKNSGGA-GTEAKLEAARELGIPVVMIARPALPYADREFEDVAELVAWLRHL 246 (248)
T ss_pred CCCHHHHHHHHHHcCCCEEEEcCCCch-hhHHHHHHHHHcCCeEEEEeCCCCCCCCcccCCHHHHHHHHHHh
Confidence 333445566788899999996554432 122223445667888877755543322 3445677777777654
No 113
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=67.57 E-value=20 Score=20.19 Aligned_cols=18 Identities=33% Similarity=0.637 Sum_probs=13.5
Q ss_pred HcCCeEEEEcCCCCChHHH
Q psy7473 109 KTGGTVYVHCKAGRTRSAT 127 (136)
Q Consensus 109 ~~~~~VlVHC~~G~~RS~~ 127 (136)
.++.+|+++|..| .|+..
T Consensus 48 ~~~~~vv~~c~~~-~~a~~ 65 (89)
T cd00158 48 DKDKPIVVYCRSG-NRSAR 65 (89)
T ss_pred CCCCeEEEEeCCC-chHHH
Confidence 5678999999987 35533
No 114
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=66.65 E-value=19 Score=22.87 Aligned_cols=34 Identities=18% Similarity=0.280 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEEcCCCCChHHHH
Q psy7473 95 DKLERGVDFIQRISKTGGTVYVHCKAGRTRSATL 128 (136)
Q Consensus 95 ~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v 128 (136)
..+.++.+.+++..+.+.||+|....|-|++-..
T Consensus 5 ~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A 38 (138)
T PF14532_consen 5 PAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLA 38 (138)
T ss_dssp HHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHH
Confidence 4577788888888888899999999999998543
No 115
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=65.57 E-value=13 Score=27.92 Aligned_cols=14 Identities=43% Similarity=0.797 Sum_probs=11.2
Q ss_pred HHcCC----eEEEEcCCC
Q psy7473 108 SKTGG----TVYVHCKAG 121 (136)
Q Consensus 108 ~~~~~----~VlVHC~~G 121 (136)
+.+|. .||.||.+|
T Consensus 140 I~dg~~~~~~ILThcnsg 157 (331)
T TIGR00512 140 IKKGVAAPLRVLTHCNTG 157 (331)
T ss_pred hcCCCCCCceEEeecCCc
Confidence 34677 899999987
No 116
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=65.44 E-value=14 Score=26.75 Aligned_cols=31 Identities=10% Similarity=0.040 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEEcCCCCChH
Q psy7473 95 DKLERGVDFIQRISKTGGTVYVHCKAGRTRS 125 (136)
Q Consensus 95 ~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS 125 (136)
.+.+-+..+|+-+.+.+.||.|||+.-...+
T Consensus 109 ~Q~~~F~~ql~lA~~~~lPviIH~R~A~~d~ 139 (256)
T COG0084 109 RQEEVFEAQLELAKELNLPVIIHTRDAHEDT 139 (256)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEccccHHHH
Confidence 4556666777777777888888887654443
No 117
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=65.11 E-value=10 Score=24.42 Aligned_cols=31 Identities=13% Similarity=0.129 Sum_probs=24.2
Q ss_pred cEEEeCCCCcccHHHHHhcCCCEEEEcccCc
Q psy7473 32 NIILGALPFKRLTNKLLEENVKGVVSMNEDY 62 (136)
Q Consensus 32 ~l~~g~~~~~~~~~~l~~~gi~~Vi~l~~~~ 62 (136)
.+++|+.....+.+.+++.|+..++...++.
T Consensus 86 ~vivGG~~~~~~~~~l~~~Gvd~~~~~gt~~ 116 (132)
T TIGR00640 86 LVVVGGVIPPQDFDELKEMGVAEIFGPGTPI 116 (132)
T ss_pred EEEEeCCCChHhHHHHHHCCCCEEECCCCCH
Confidence 4788887777777888888888888777654
No 118
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=64.94 E-value=34 Score=25.97 Aligned_cols=18 Identities=28% Similarity=0.529 Sum_probs=14.2
Q ss_pred HcCCeEEEEcCCCCChHHH
Q psy7473 109 KTGGTVYVHCKAGRTRSAT 127 (136)
Q Consensus 109 ~~~~~VlVHC~~G~~RS~~ 127 (136)
..+.+|+++|..|. ||..
T Consensus 55 ~~~~~IvvyC~~G~-rs~~ 72 (376)
T PRK08762 55 DRDREIVLICASGT-RSAH 72 (376)
T ss_pred CCCCeEEEEcCCCc-HHHH
Confidence 45789999999884 7754
No 119
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=64.58 E-value=11 Score=22.96 Aligned_cols=22 Identities=9% Similarity=0.087 Sum_probs=15.3
Q ss_pred HHcCCeEEEEcCCCC-ChHHHHH
Q psy7473 108 SKTGGTVYVHCKAGR-TRSATLV 129 (136)
Q Consensus 108 ~~~~~~VlVHC~~G~-~RS~~v~ 129 (136)
...+.+|+|+|..|. .||..++
T Consensus 61 i~~~~~vvvyc~~g~~~~s~~~a 83 (110)
T cd01521 61 LDKEKLFVVYCDGPGCNGATKAA 83 (110)
T ss_pred CCCCCeEEEEECCCCCchHHHHH
Confidence 356789999999885 3554433
No 120
>TIGR03642 cas_csx13 CRISPR-associated protein, Csx13 family. This model describes a protein N-terminal protein sequence domain strictly associated with CRISPR and CRISPR-associated protein systems. This model and TIGR02584 identify two separate clades from a larger homology domain family, both CRISPR-associated, while other homologs are found that may not be. Members are found in bacteria that include Pelotomaculum thermopropionicum SI, Thermoanaerobacter tengcongensis MB4, and Roseiflexus sp. RS-1, and in archaea that include Thermoplasma volcanium, Picrophilus torridus, and Methanospirillum hungatei. The molecular function is unknown.
Probab=64.17 E-value=35 Score=21.82 Aligned_cols=51 Identities=16% Similarity=0.203 Sum_probs=22.7
Q ss_pred eeCCCCCCCch-HHHHHHHHHHHHHHHHcCC--eEEEEcCCCCChHHHHHHHHhh
Q psy7473 83 LSTRDIFDTPD-QDKLERGVDFIQRISKTGG--TVYVHCKAGRTRSATLVGCYLM 134 (136)
Q Consensus 83 ~p~~D~~~~~~-~~~~~~~~~~i~~~~~~~~--~VlVHC~~G~~RS~~v~~ayLm 134 (136)
+|+.|..++.. ...++.+.+.|.+..++++ ++.+ |-+|=-++-++.++|.+
T Consensus 59 ~~~~DI~t~~d~~~~~~~I~~~i~~l~~~~~~~~lh~-~iaGGRK~Ms~~~~~a~ 112 (124)
T TIGR03642 59 LKFDDILSDEDILTFMSIAAKEVKKERENYGCERIIV-NISGGRKIMTIILALYA 112 (124)
T ss_pred cCccccCCHHHHHHHHHHHHHHHHHHhhCCCcceEEE-EecCCHHHHHHHHHHHH
Confidence 45555442222 2223333344444444444 3443 56663355555555543
No 121
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=63.94 E-value=60 Score=24.38 Aligned_cols=76 Identities=13% Similarity=0.023 Sum_probs=45.4
Q ss_pred HHHhcCCCEEEEcccCccc---ccccChhhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCCCC
Q psy7473 46 KLLEENVKGVVSMNEDYEL---YFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGR 122 (136)
Q Consensus 46 ~l~~~gi~~Vi~l~~~~~~---~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~ 122 (136)
..++.|....+++...... .+....+.....|.. .+-+.|....-.++.+.+.+..+++...++-++-+||+.-.
T Consensus 122 ~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~--~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~Hnnl 199 (333)
T TIGR03217 122 MARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGAD--CVYIVDSAGAMLPDDVRDRVRALKAVLKPETQVGFHAHHNL 199 (333)
T ss_pred HHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCC--EEEEccCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeCCCC
Confidence 3555677766666543211 000011222334544 34567776677788888888888877655578999998654
Q ss_pred C
Q psy7473 123 T 123 (136)
Q Consensus 123 ~ 123 (136)
|
T Consensus 200 G 200 (333)
T TIGR03217 200 S 200 (333)
T ss_pred c
Confidence 4
No 122
>COG3564 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.92 E-value=13 Score=22.70 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHcCCeEEEEcCCCC
Q psy7473 97 LERGVDFIQRISKTGGTVYVHCKAGR 122 (136)
Q Consensus 97 ~~~~~~~i~~~~~~~~~VlVHC~~G~ 122 (136)
-+.+++.|++..++-++|+.|=++|-
T Consensus 10 T~aAl~Li~~l~~~hgpvmFHQSGGC 35 (116)
T COG3564 10 TPAALDLIAELQAEHGPVMFHQSGGC 35 (116)
T ss_pred CHHHHHHHHHHHHhcCCEEEeccCCc
Confidence 35678888888888899999977663
No 123
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=63.27 E-value=9.3 Score=23.98 Aligned_cols=32 Identities=16% Similarity=0.065 Sum_probs=24.2
Q ss_pred cEEEeCCCCcccHHHHHhcCCCEEEEcccCcc
Q psy7473 32 NIILGALPFKRLTNKLLEENVKGVVSMNEDYE 63 (136)
Q Consensus 32 ~l~~g~~~~~~~~~~l~~~gi~~Vi~l~~~~~ 63 (136)
.+++|+.....+.+.+++.|++.++...++.+
T Consensus 83 ~i~~GG~~~~~~~~~~~~~G~d~~~~~~~~~~ 114 (122)
T cd02071 83 LVVGGGIIPPEDYELLKEMGVAEIFGPGTSIE 114 (122)
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEECCCCCHH
Confidence 47888776666677888889988888776643
No 124
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=62.59 E-value=65 Score=24.30 Aligned_cols=18 Identities=11% Similarity=0.065 Sum_probs=13.4
Q ss_pred HHHHHHHHcCCeEEEEcC
Q psy7473 102 DFIQRISKTGGTVYVHCK 119 (136)
Q Consensus 102 ~~i~~~~~~~~~VlVHC~ 119 (136)
+.++...+.|.+|+|||.
T Consensus 124 ~~~~~~~~~g~~v~~H~E 141 (374)
T cd01317 124 RALEYAAMLDLPIIVHPE 141 (374)
T ss_pred HHHHHHHhcCCeEEEecC
Confidence 445555567889999996
No 125
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=61.70 E-value=21 Score=25.60 Aligned_cols=69 Identities=10% Similarity=0.104 Sum_probs=40.9
Q ss_pred eCCCCcccHHHHHhcCCCEEEEcccCcccccccChhhhhhcCCeEEEeeCCCCCCCc-hHHHHHHHHHHHH
Q psy7473 36 GALPFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTP-DQDKLERGVDFIQ 105 (136)
Q Consensus 36 g~~~~~~~~~~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~i~~~~~p~~D~~~~~-~~~~~~~~~~~i~ 105 (136)
|.+....+...+++++++.+|+=.+... ......+.....|+..+-+.-+..+... ....++++++.++
T Consensus 179 GPfs~e~n~al~~~~~i~~lVtK~SG~~-g~~eKi~AA~~lgi~vivI~RP~~~~~~~~~~~~~e~l~~l~ 248 (249)
T PF02571_consen 179 GPFSKELNRALFRQYGIDVLVTKESGGS-GFDEKIEAARELGIPVIVIKRPPEPYGDPVVETIEELLDWLE 248 (249)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEcCCCch-hhHHHHHHHHHcCCeEEEEeCCCCCCCCcccCCHHHHHHHHh
Confidence 4444445666788899999996544332 2222234456688888777655544222 2356677776664
No 126
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=61.58 E-value=59 Score=23.49 Aligned_cols=76 Identities=9% Similarity=0.051 Sum_probs=46.4
Q ss_pred HHHhcCCCEEEEcccCccc---ccccChhhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCCCC
Q psy7473 46 KLLEENVKGVVSMNEDYEL---YFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGR 122 (136)
Q Consensus 46 ~l~~~gi~~Vi~l~~~~~~---~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~ 122 (136)
..++.|.+..+++...... .+........+.|... +-+.|....-.++++.+.++.+++...++-++-+||+.-.
T Consensus 117 ~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~--i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn~~ 194 (266)
T cd07944 117 AIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDV--FYIVDSFGSMYPEDIKRIISLLRSNLDKDIKLGFHAHNNL 194 (266)
T ss_pred HHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCE--EEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence 3556788877776543321 0111112223355554 4567776677788888888888876654478999997644
Q ss_pred C
Q psy7473 123 T 123 (136)
Q Consensus 123 ~ 123 (136)
|
T Consensus 195 G 195 (266)
T cd07944 195 Q 195 (266)
T ss_pred c
Confidence 3
No 127
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=61.44 E-value=31 Score=26.53 Aligned_cols=66 Identities=14% Similarity=0.141 Sum_probs=45.4
Q ss_pred HHhcCCCEEEEcccCcccccccChhhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEc
Q psy7473 47 LLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHC 118 (136)
Q Consensus 47 l~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC 118 (136)
+++..-+.-|=+..+ .|+++...++..|++....|.-|.. .....|+..+..+.++ ..|.-||.|+
T Consensus 114 l~~~~~~~~vwis~P---tW~NH~~If~~aGl~v~~Y~Yyd~~--~~~~df~~mla~L~~a-~~~~vvLLH~ 179 (396)
T COG1448 114 LARFFPDATVWISDP---TWPNHKAIFEAAGLEVETYPYYDAE--TKGLDFDGMLADLKTA-PEGSVVLLHG 179 (396)
T ss_pred HHHhCCCceEEeCCC---CcHhHHHHHHhcCCceeeeeccccc--cccccHHHHHHHHHhC-CCCCEEEEec
Confidence 444444444444433 5677888899999999999998854 3335677777777665 4467888886
No 128
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=61.32 E-value=16 Score=29.80 Aligned_cols=41 Identities=15% Similarity=0.295 Sum_probs=28.8
Q ss_pred hhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCC
Q psy7473 72 EWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKA 120 (136)
Q Consensus 72 ~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~ 120 (136)
.+++.|+.|+- |++.+. +++.+..++++.+.++||++|...
T Consensus 238 lFeelGf~YiG-PiDGHn-------i~~Li~~Lk~~kd~~gPvllHv~T 278 (627)
T COG1154 238 LFEELGFNYIG-PIDGHN-------LEELIPTLKNAKDLKGPVLLHVVT 278 (627)
T ss_pred hHHHhCCeeEC-CcCCCC-------HHHHHHHHHHHhcCCCCEEEEEEe
Confidence 45667888753 555533 566666777777788999999954
No 129
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=61.18 E-value=68 Score=24.98 Aligned_cols=83 Identities=12% Similarity=0.242 Sum_probs=48.3
Q ss_pred HHhcCCCEEEEcccCcccccccChhhhhhcCCe-----EEEeeCCCCC----CCchHHHHHHHHHHHHHHHHcC-CeEEE
Q psy7473 47 LLEENVKGVVSMNEDYELYFANGREEWNKVGVE-----FLQLSTRDIF----DTPDQDKLERGVDFIQRISKTG-GTVYV 116 (136)
Q Consensus 47 l~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~i~-----~~~~p~~D~~----~~~~~~~~~~~~~~i~~~~~~~-~~VlV 116 (136)
-.++|-.+|-+|++.... ......-++ .=.+|+-+.. .....-.-+.+++.|+++.++| .=+-|
T Consensus 86 A~~~GADtiMDLStGgdl------~~iR~~il~~s~vpvGTVPiYqa~~~~~~~~~~mt~d~~~~~ie~qa~dGVDfmTi 159 (423)
T TIGR00190 86 AIKYGADTVMDLSTGGDL------DEIRKAILDAVPVPVGTVPIYQAAEKVHGAVEDMDEDDMFRAIEKQAKDGVDFMTI 159 (423)
T ss_pred HHHcCCCeEeeccCCCCH------HHHHHHHHHcCCCCccCccHHHHHHHhcCChhhCCHHHHHHHHHHHHHhCCCEEEE
Confidence 345899999999987653 222221112 1122221100 0011112356777788887776 46789
Q ss_pred EcC-----------CC-----CChHHHHHHHHhhc
Q psy7473 117 HCK-----------AG-----RTRSATLVGCYLMK 135 (136)
Q Consensus 117 HC~-----------~G-----~~RS~~v~~ayLm~ 135 (136)
||. .| +||-|++.++|+++
T Consensus 160 H~Gi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~ 194 (423)
T TIGR00190 160 HAGVLLEYVERLKRSGRITGIVSRGGAILAAWMLH 194 (423)
T ss_pred ccchhHHHHHHHHhCCCccCeecCcHHHHHHHHHH
Confidence 995 11 68999999999876
No 130
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=60.03 E-value=58 Score=22.95 Aligned_cols=73 Identities=10% Similarity=0.144 Sum_probs=46.6
Q ss_pred HHHhcCCCEEEEcccCcc--c---ccccChhhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCC
Q psy7473 46 KLLEENVKGVVSMNEDYE--L---YFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKA 120 (136)
Q Consensus 46 ~l~~~gi~~Vi~l~~~~~--~---~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~ 120 (136)
..++.|++..+++..-.. . .+..........|...+. +.|......++.+.+.++.+.+...+ -++-+||+.
T Consensus 123 ~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~--l~Dt~G~~~P~~v~~li~~l~~~~~~-~~~~~H~Hn 199 (265)
T cd03174 123 AAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEIS--LKDTVGLATPEEVAELVKALREALPD-VPLGLHTHN 199 (265)
T ss_pred HHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEE--echhcCCcCHHHHHHHHHHHHHhCCC-CeEEEEeCC
Confidence 467799999999843221 1 111112233446666554 55665567788889888888876653 788888865
Q ss_pred C
Q psy7473 121 G 121 (136)
Q Consensus 121 G 121 (136)
-
T Consensus 200 ~ 200 (265)
T cd03174 200 T 200 (265)
T ss_pred C
Confidence 3
No 131
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=59.80 E-value=15 Score=27.49 Aligned_cols=15 Identities=47% Similarity=0.813 Sum_probs=12.2
Q ss_pred HHcCCeEEEEcCCCC
Q psy7473 108 SKTGGTVYVHCKAGR 122 (136)
Q Consensus 108 ~~~~~~VlVHC~~G~ 122 (136)
+.++..||-||.+|-
T Consensus 147 l~~~~~VLThCNaGa 161 (346)
T COG0182 147 LPDGDTVLTHCNAGA 161 (346)
T ss_pred hccCCeEEeeecCCc
Confidence 356789999999984
No 132
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=59.73 E-value=61 Score=26.30 Aligned_cols=83 Identities=10% Similarity=0.097 Sum_probs=45.8
Q ss_pred HHhcCCCEEEEcccCcccccccChhhhhh-----cCCeEEEeeCCCCC----CCchHHHHHHHHHHHHHHHHcC-CeEEE
Q psy7473 47 LLEENVKGVVSMNEDYELYFANGREEWNK-----VGVEFLQLSTRDIF----DTPDQDKLERGVDFIQRISKTG-GTVYV 116 (136)
Q Consensus 47 l~~~gi~~Vi~l~~~~~~~~~~~~~~~~~-----~~i~~~~~p~~D~~----~~~~~~~~~~~~~~i~~~~~~~-~~VlV 116 (136)
-.++|-.+|-+|.+.... ..... ..+-.=.+|+-+.- .....-..+.+.+.|.++.++| .=+-|
T Consensus 241 A~~~GADtvMDLSTGgdi------~~~R~~Il~~spvPvGTVPiYqA~~~~~~~~~~lt~e~~~d~ieeQAeqGVDf~TI 314 (607)
T PRK09284 241 ATRWGADTVMDLSTGKNI------HETREWILRNSPVPIGTVPIYQALEKVNGVAEDLTWEIFRDTLIEQAEQGVDYFTI 314 (607)
T ss_pred HHHcCCCEEEecCCCCCH------HHHHHHHHHcCCCCccCccHHHHHHHhcCChhhCCHHHHHHHHHHHHHhCCCEEEE
Confidence 345899999999987653 11111 11111122221100 0011112355566666776665 36789
Q ss_pred EcCC--------------CCChHHHHHHHHhhc
Q psy7473 117 HCKA--------------GRTRSATLVGCYLMK 135 (136)
Q Consensus 117 HC~~--------------G~~RS~~v~~ayLm~ 135 (136)
||.- =+||-|++.+.|++.
T Consensus 315 HaGv~~~~v~~~~~R~tgIVSRGGSima~Wml~ 347 (607)
T PRK09284 315 HAGVLLRYVPLTAKRVTGIVSRGGSIMAKWCLA 347 (607)
T ss_pred ChhhHHHHHHHHhCcccCcccCCHHHHHHHHHH
Confidence 9951 168899999999875
No 133
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=58.67 E-value=14 Score=26.14 Aligned_cols=29 Identities=31% Similarity=0.477 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHcC-CeEEEEcC-CCCChHH
Q psy7473 98 ERGVDFIQRISKTG-GTVYVHCK-AGRTRSA 126 (136)
Q Consensus 98 ~~~~~~i~~~~~~~-~~VlVHC~-~G~~RS~ 126 (136)
+.+...++.+.++| ++|+|||- -|+.=++
T Consensus 46 ~Hl~al~~~a~~~gv~~V~vH~f~DGRDt~P 76 (223)
T PF06415_consen 46 DHLFALIKLAKKQGVKKVYVHAFTDGRDTPP 76 (223)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEEE-SSSS-T
T ss_pred HHHHHHHHHHHHcCCCEEEEEEecCCCCCCc
Confidence 33334444444455 45777773 3554333
No 134
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=58.61 E-value=5.3 Score=23.86 Aligned_cols=19 Identities=21% Similarity=0.559 Sum_probs=16.0
Q ss_pred CCccccccCcEEEeCCCCc
Q psy7473 23 RRWYDRIDENIILGALPFK 41 (136)
Q Consensus 23 ~~~~~~i~~~l~~g~~~~~ 41 (136)
..|+.+|.+++|+|+....
T Consensus 18 trwl~Ei~~GVyVg~~s~r 36 (86)
T PF09707_consen 18 TRWLLEIRPGVYVGNVSAR 36 (86)
T ss_pred hheeEecCCCcEEcCCCHH
Confidence 5689999999999987654
No 135
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=57.90 E-value=79 Score=23.79 Aligned_cols=76 Identities=12% Similarity=-0.023 Sum_probs=46.0
Q ss_pred HHHhcCCCEEEEcccCccc---ccccChhhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCCCC
Q psy7473 46 KLLEENVKGVVSMNEDYEL---YFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGR 122 (136)
Q Consensus 46 ~l~~~gi~~Vi~l~~~~~~---~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~ 122 (136)
..++.|....+++...... .+..........|.. .+-+.|....-.++.+.+.++.+++....+-++-+||+.-.
T Consensus 123 ~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~--~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~Hnnl 200 (337)
T PRK08195 123 LARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQ--CVYVVDSAGALLPEDVRDRVRALRAALKPDTQVGFHGHNNL 200 (337)
T ss_pred HHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCC--EEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCc
Confidence 3555777777766543221 000111222334554 35677776677788888888888877655678999997644
Q ss_pred C
Q psy7473 123 T 123 (136)
Q Consensus 123 ~ 123 (136)
|
T Consensus 201 G 201 (337)
T PRK08195 201 G 201 (337)
T ss_pred c
Confidence 4
No 136
>cd01720 Sm_D2 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit D2 heterodimerizes with subunit D1 and three such heterodimers form a hexameric ring structure with alternating D1 and D2 subunits. The D1 - D2 heterodimer also assembles into a heptameric ring containing D2, D3, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=57.83 E-value=17 Score=21.69 Aligned_cols=25 Identities=12% Similarity=0.405 Sum_probs=19.0
Q ss_pred HHHHHHHHHcCCeEEEEcCCCCChH
Q psy7473 101 VDFIQRISKTGGTVYVHCKAGRTRS 125 (136)
Q Consensus 101 ~~~i~~~~~~~~~VlVHC~~G~~RS 125 (136)
.++++.+.+.+++|+|+++.|..=.
T Consensus 4 l~~L~~~~~~~~~V~V~lr~~r~~~ 28 (87)
T cd01720 4 LSLLTQAVKNNTQVLINCRNNKKLL 28 (87)
T ss_pred HHHHHHHHcCCCEEEEEEcCCCEEE
Confidence 3566777777899999999986533
No 137
>PLN02444 HMP-P synthase
Probab=57.34 E-value=64 Score=26.31 Aligned_cols=83 Identities=8% Similarity=0.059 Sum_probs=45.9
Q ss_pred HHhcCCCEEEEcccCcccccccChhhhhh-----cCCeEEEeeCCCCC----CCchHHHHHHHHHHHHHHHHcC-CeEEE
Q psy7473 47 LLEENVKGVVSMNEDYELYFANGREEWNK-----VGVEFLQLSTRDIF----DTPDQDKLERGVDFIQRISKTG-GTVYV 116 (136)
Q Consensus 47 l~~~gi~~Vi~l~~~~~~~~~~~~~~~~~-----~~i~~~~~p~~D~~----~~~~~~~~~~~~~~i~~~~~~~-~~VlV 116 (136)
-.++|-.+|-+|.+.... ..... ..+-.=.+|+-+.. .....-..+.+.+.|.++.++| .=+-|
T Consensus 246 A~~~GADTvMDLSTGgdi------~~iR~~Il~~spvPVGTVPIYqA~~~~~~~~~~lt~d~~~d~ieeQaeqGVDfmTI 319 (642)
T PLN02444 246 ATMWGADTVMDLSTGRHI------HETREWILRNSPVPVGTVPIYQALEKVDGIAENLTWEVFRETLIEQAEQGVDYFTI 319 (642)
T ss_pred HHHcCCCeEeeccCCCCH------HHHHHHHHHcCCCCccCccHHHHHHHhcCChhhCCHHHHHHHHHHHHHhCCCEEEE
Confidence 344899999999987653 11111 11111122221100 0011112355666677777665 36789
Q ss_pred EcCC--------------CCChHHHHHHHHhhc
Q psy7473 117 HCKA--------------GRTRSATLVGCYLMK 135 (136)
Q Consensus 117 HC~~--------------G~~RS~~v~~ayLm~ 135 (136)
||.- =+||-|++.+.|++.
T Consensus 320 H~Gv~~~~v~~~~~R~tgIVSRGGSi~a~Wml~ 352 (642)
T PLN02444 320 HAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLA 352 (642)
T ss_pred ChhhHHHHHHHHhCcccCceeCCcHHHHHHHHH
Confidence 9951 167889999998875
No 138
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=57.33 E-value=22 Score=29.59 Aligned_cols=46 Identities=20% Similarity=0.309 Sum_probs=28.2
Q ss_pred hhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHHHHcC--CeEEEEcCCCCCh
Q psy7473 71 EEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTG--GTVYVHCKAGRTR 124 (136)
Q Consensus 71 ~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~~--~~VlVHC~~G~~R 124 (136)
..|++.|+.|+ -|++.++ +++.++.++++.+.+ +||+||-..-+|+
T Consensus 320 ~lFe~lG~~Y~-GpvDGHd-------i~~Li~~l~~~k~~~~~~PvlvHv~T~KGk 367 (701)
T PLN02225 320 TLFEELGLYYI-GPVDGHN-------IEDLVCVLREVSSLDSMGPVLVHVITEENR 367 (701)
T ss_pred CcHHHcCCeEE-CccCCCC-------HHHHHHHHHHHHcCCCCCCEEEEEEecCCC
Confidence 35677888885 3665543 444555555555444 8999998654443
No 139
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=57.03 E-value=19 Score=21.94 Aligned_cols=23 Identities=13% Similarity=0.145 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHcCCeEEEEcC
Q psy7473 97 LERGVDFIQRISKTGGTVYVHCK 119 (136)
Q Consensus 97 ~~~~~~~i~~~~~~~~~VlVHC~ 119 (136)
+.++.+.++.+...|-++.+||.
T Consensus 32 it~~~~i~~~A~~~gi~~~~h~~ 54 (111)
T PF13378_consen 32 ITEALRIAALAEAHGIPVMPHSM 54 (111)
T ss_dssp HHHHHHHHHHHHHTT-EEEEBSS
T ss_pred HHHHHHHHHHHHHhCCCEEecCC
Confidence 67888888888889999999996
No 140
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=56.98 E-value=20 Score=28.33 Aligned_cols=20 Identities=20% Similarity=0.233 Sum_probs=15.3
Q ss_pred HcCCeEEEEcCCCCChHHHHH
Q psy7473 109 KTGGTVYVHCKAGRTRSATLV 129 (136)
Q Consensus 109 ~~~~~VlVHC~~G~~RS~~v~ 129 (136)
..+++++++|..|. ||...+
T Consensus 447 ~~~~~iivyC~~G~-rS~~aa 466 (482)
T PRK01269 447 DQSKTYLLYCDRGV-MSRLQA 466 (482)
T ss_pred CCCCeEEEECCCCH-HHHHHH
Confidence 45679999999995 875544
No 141
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=56.93 E-value=18 Score=27.14 Aligned_cols=21 Identities=29% Similarity=0.727 Sum_probs=14.8
Q ss_pred HHHHHHHHcCCeEEEEcCCCC
Q psy7473 102 DFIQRISKTGGTVYVHCKAGR 122 (136)
Q Consensus 102 ~~i~~~~~~~~~VlVHC~~G~ 122 (136)
++-.+.+.+|..||.||.+|-
T Consensus 128 ~~g~~~I~~g~~ILThcnsg~ 148 (329)
T PRK06371 128 EYGNELIKNGARILTHCNAGA 148 (329)
T ss_pred HHHHHHcCCCCEEEEeCCCCc
Confidence 333344467889999999884
No 142
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=56.83 E-value=17 Score=29.74 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=15.2
Q ss_pred HcCCeEEEEcCCCCChHHHHH
Q psy7473 109 KTGGTVYVHCKAGRTRSATLV 129 (136)
Q Consensus 109 ~~~~~VlVHC~~G~~RS~~v~ 129 (136)
..+++|.++|..|. ||+.+.
T Consensus 221 ~~~~~VVvYC~sG~-rAa~~~ 240 (610)
T PRK09629 221 TPDKEVITHCQTHH-RSGFTY 240 (610)
T ss_pred CCCCCEEEECCCCh-HHHHHH
Confidence 56789999999995 665543
No 143
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=56.36 E-value=23 Score=28.99 Aligned_cols=40 Identities=15% Similarity=0.376 Sum_probs=24.6
Q ss_pred hhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCC
Q psy7473 73 WNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKA 120 (136)
Q Consensus 73 ~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~ 120 (136)
++..|+.|.. |++.++ ++++.+.++++.+.++|++|||..
T Consensus 234 f~~~G~~~~~-~vDGhd-------~~~l~~al~~ak~~~~P~~i~~~T 273 (617)
T TIGR00204 234 FEELGFNYIG-PVDGHD-------LLELIETLKNAKKLKGPVFLHIQT 273 (617)
T ss_pred HHHcCCcEEc-ccCCCC-------HHHHHHHHHHHhcCCCCEEEEEEe
Confidence 6667887765 664322 344444444555556799999964
No 144
>PRK02947 hypothetical protein; Provisional
Probab=55.80 E-value=42 Score=23.89 Aligned_cols=35 Identities=29% Similarity=0.559 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEEEEcCCCCChHHHHHH
Q psy7473 93 DQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVG 130 (136)
Q Consensus 93 ~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ 130 (136)
..+.++++++.+.+.+.++++|++. |.|.|+.++.
T Consensus 22 ~~e~i~~aa~lla~~i~~a~~I~i~---G~G~S~~vA~ 56 (246)
T PRK02947 22 QAEAIEKAADLIADSIRNGGLIYVF---GTGHSHILAE 56 (246)
T ss_pred hHHHHHHHHHHHHHHHHCCCEEEEE---cCcHHHHHHH
Confidence 4567889999999999888999885 5556655543
No 145
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=55.65 E-value=16 Score=27.76 Aligned_cols=12 Identities=50% Similarity=1.038 Sum_probs=9.3
Q ss_pred cCCeEEEEcCCCC
Q psy7473 110 TGGTVYVHCKAGR 122 (136)
Q Consensus 110 ~~~~VlVHC~~G~ 122 (136)
+|. ||.||.+|-
T Consensus 160 dg~-ILTHcnaG~ 171 (356)
T PRK08334 160 EGN-VLTHCNAGS 171 (356)
T ss_pred CCC-EEEecCcch
Confidence 444 999998874
No 146
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=55.51 E-value=36 Score=24.57 Aligned_cols=72 Identities=13% Similarity=0.137 Sum_probs=40.4
Q ss_pred eCCCCcccHHHHHhcCCCEEEEcccCcccccccChhhhhhcCCeEEEeeCCCCCCC-chHHHHHHHHHHHHHH
Q psy7473 36 GALPFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDT-PDQDKLERGVDFIQRI 107 (136)
Q Consensus 36 g~~~~~~~~~~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~i~~~~~p~~D~~~~-~~~~~~~~~~~~i~~~ 107 (136)
|.+....+...+++++|+.+|+=.+...-......+.....|+..+-+.-+..+.+ .....++++.+++.+.
T Consensus 182 gPfs~e~n~al~~~~~i~~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP~~~~~~~~~~~~~el~~~l~~~ 254 (256)
T TIGR00715 182 GPFSEELEKALLREYRIDAVVTKASGEQGGELEKVKAAEALGINVIRIARPQTIPGVAIFDDISQLNQFVARL 254 (256)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEcCCCCccchHHHHHHHHHcCCcEEEEeCCCCCCCCccCCCHHHHHHHHHHh
Confidence 34444456667888999999964433210111122344567887776655543322 3445677777776653
No 147
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=55.00 E-value=20 Score=23.98 Aligned_cols=35 Identities=20% Similarity=0.145 Sum_probs=25.3
Q ss_pred eeCCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCC
Q psy7473 83 LSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKA 120 (136)
Q Consensus 83 ~p~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~ 120 (136)
+|+.|.+ -..+++.+-+.+....+.++.++|-|++
T Consensus 42 iPL~DdD---R~pWL~~l~~~~~~~~~~~~~~vi~CSA 76 (161)
T COG3265 42 IPLNDDD---RWPWLEALGDAAASLAQKNKHVVIACSA 76 (161)
T ss_pred CCCCcch---hhHHHHHHHHHHHHhhcCCCceEEecHH
Confidence 3777743 4457777778887777777778888975
No 148
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=54.45 E-value=29 Score=26.90 Aligned_cols=87 Identities=13% Similarity=0.176 Sum_probs=44.7
Q ss_pred HHhcCCCEEEEcccCccc-ccccChhhhhhcCCeEEEeeCCCC----CCCchHHHHHHHHHHHHHHHHcC-CeEEEEcCC
Q psy7473 47 LLEENVKGVVSMNEDYEL-YFANGREEWNKVGVEFLQLSTRDI----FDTPDQDKLERGVDFIQRISKTG-GTVYVHCKA 120 (136)
Q Consensus 47 l~~~gi~~Vi~l~~~~~~-~~~~~~~~~~~~~i~~~~~p~~D~----~~~~~~~~~~~~~~~i~~~~~~~-~~VlVHC~~ 120 (136)
-.++|-.+|-+|.+..+. .+. ........+-.-.+|+-+. ......-.-+.+.+.|+++.++| .=+-|||.-
T Consensus 85 A~~~GADtvMDLStggdl~~iR--~~il~~~~vpvGTVPiYqa~~~~~~~~~~~t~d~~~~~ie~qa~~GVDfmtiH~gi 162 (420)
T PF01964_consen 85 AEKAGADTVMDLSTGGDLDEIR--RAILENSPVPVGTVPIYQAAIRKGGSIVDMTEDDFFDVIEKQAKDGVDFMTIHCGI 162 (420)
T ss_dssp HHHTT-SEEEE---STTHHHHH--HHHHHT-SS-EEE-HHHHHHHHTTT-GGG--HHHHHHHHHHHHHHT--EEEE-TT-
T ss_pred HHHhCCCEEEEcCCCCCHHHHH--HHHHHhCCCccccchHHHHHHHhCCChhhCCHHHHHHHHHHHHHcCCCEEEEccch
Confidence 345999999999987653 000 1112223444444554221 11223334577888888888776 468899951
Q ss_pred ----------------CCChHHHHHHHHhhc
Q psy7473 121 ----------------GRTRSATLVGCYLMK 135 (136)
Q Consensus 121 ----------------G~~RS~~v~~ayLm~ 135 (136)
=+||.|++.++|+++
T Consensus 163 t~~~~~~~~~~~R~~giVSRGGs~l~~WM~~ 193 (420)
T PF01964_consen 163 TRETLERLKKSGRIMGIVSRGGSILAAWMLH 193 (420)
T ss_dssp -GGGGGGGT--TSSS----HHHHHHHHHHHH
T ss_pred hHHHHHHHhhhccccCccccchHHHHHHHHh
Confidence 168999999999875
No 149
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=54.42 E-value=21 Score=26.54 Aligned_cols=63 Identities=22% Similarity=0.242 Sum_probs=33.3
Q ss_pred cccccCcEEEeCCCCcccHHHHHhcCCCEEEEcccCccc----cccc----ChhhhhhcCC-eEEEeeCCCCC
Q psy7473 26 YDRIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYEL----YFAN----GREEWNKVGV-EFLQLSTRDIF 89 (136)
Q Consensus 26 ~~~i~~~l~~g~~~~~~~~~~l~~~gi~~Vi~l~~~~~~----~~~~----~~~~~~~~~i-~~~~~p~~D~~ 89 (136)
-|+..+.=|++..- .+..+.|.+.|++.|+-++...-. .... ..+.+...|+ +|.++|..+++
T Consensus 230 QS~~g~~~WL~P~~-~~~l~~l~~~G~~~V~v~p~gFv~D~lETl~eidie~re~~~~~G~~~~~~ip~lN~~ 301 (316)
T PF00762_consen 230 QSRFGPGEWLGPST-EDVLEELAKEGVKRVVVVPPGFVSDCLETLYEIDIEYRELAEEAGGEEFVRIPCLNDS 301 (316)
T ss_dssp ES-SSSS-BSSSBH-HHHHHHHHHCT-SEEEEEETT-SSSSHHHHCCCCCHHHHHHHHHTCCEEEE---STT-
T ss_pred ECCCCCCCCccccH-HHHHHHHHhcCCCeEEEECCccccccHhHHHHHHHHHHHHHHHcCCceEEEeCCCCCC
Confidence 44455555555542 344577888999999987654321 0000 1344566788 99999988765
No 150
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=52.56 E-value=42 Score=24.10 Aligned_cols=29 Identities=7% Similarity=-0.023 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEEcCCCC
Q psy7473 94 QDKLERGVDFIQRISKTGGTVYVHCKAGR 122 (136)
Q Consensus 94 ~~~~~~~~~~i~~~~~~~~~VlVHC~~G~ 122 (136)
..+.+-+.++++-+.+.+.||.|||....
T Consensus 110 ~~Q~~vf~~ql~lA~~~~~Pv~iH~r~a~ 138 (258)
T PRK11449 110 ERQQWLLDEQLKLAKRYDLPVILHSRRTH 138 (258)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEecCcc
Confidence 44556666667777777889999997543
No 151
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=52.52 E-value=35 Score=25.85 Aligned_cols=18 Identities=28% Similarity=0.628 Sum_probs=13.6
Q ss_pred HHcCCeEEEEcCCCCChH
Q psy7473 108 SKTGGTVYVHCKAGRTRS 125 (136)
Q Consensus 108 ~~~~~~VlVHC~~G~~RS 125 (136)
+..|..||.||.+|.-.+
T Consensus 144 I~~g~~ILThc~sg~lat 161 (344)
T PRK05720 144 IRKGQGILTHCNAGWLAT 161 (344)
T ss_pred ccCCCEEEEecCCCccee
Confidence 346788999999986443
No 152
>PRK13936 phosphoheptose isomerase; Provisional
Probab=52.20 E-value=60 Score=22.19 Aligned_cols=32 Identities=19% Similarity=0.379 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEEcCCCCChHHHHH
Q psy7473 95 DKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLV 129 (136)
Q Consensus 95 ~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~ 129 (136)
+.++++++.+.+.+.++++|++ | |.|.|+.++
T Consensus 27 ~~i~~a~~~~~~~l~~a~~I~i-~--G~G~S~~~A 58 (197)
T PRK13936 27 PPIAQAVELMVQALLNEGKILA-C--GNGGSAADA 58 (197)
T ss_pred HHHHHHHHHHHHHHHCCCEEEE-E--eCcHhHHHH
Confidence 5567888888888888999988 4 666776655
No 153
>cd04866 LigD_Pol_like_3 LigD_Pol_like_3: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 3. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated repair DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=51.60 E-value=60 Score=23.04 Aligned_cols=53 Identities=15% Similarity=0.219 Sum_probs=28.6
Q ss_pred cCCeEEEeeCCCCCCCchHHHHHHHHHHHHHH---------------HHcCCeEEEEcCCCCChHHHHHHHH
Q psy7473 76 VGVEFLQLSTRDIFDTPDQDKLERGVDFIQRI---------------SKTGGTVYVHCKAGRTRSATLVGCY 132 (136)
Q Consensus 76 ~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~---------------~~~~~~VlVHC~~G~~RS~~v~~ay 132 (136)
.|+ ++.+|+.|. .-..+....+.+.|.+. .+++++|+|=+..- +|..|+++.|
T Consensus 137 kGl-HV~vPl~~~--~~~~~~~r~fa~~iA~~l~~~~P~~~t~~~~k~~R~gkVfiDylqN-~~g~T~vapY 204 (223)
T cd04866 137 KGL-QVYIPLPDN--KFTYDETRLFTEFIAEYLCQQFPELFTTERLKKNRHNRLYLDYVQH-AEGKTIIAPY 204 (223)
T ss_pred CeE-EEEEEcCCC--CCCHHHHHHHHHHHHHHHHHHCchhhhHHhhHHhCCCCEEEECccC-CCCCeEEecc
Confidence 344 456788842 22334444444444443 23678999998543 3444555555
No 154
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=51.29 E-value=16 Score=27.10 Aligned_cols=19 Identities=16% Similarity=0.382 Sum_probs=14.0
Q ss_pred HcCCeEEEEcCCCCChHHHH
Q psy7473 109 KTGGTVYVHCKAGRTRSATL 128 (136)
Q Consensus 109 ~~~~~VlVHC~~G~~RS~~v 128 (136)
..+++|+++|..|. |++.+
T Consensus 267 ~~~~~iv~yC~sG~-~A~~~ 285 (320)
T PLN02723 267 SLDSPIVASCGTGV-TACIL 285 (320)
T ss_pred CCCCCEEEECCcHH-HHHHH
Confidence 55789999999885 55433
No 155
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=51.00 E-value=1e+02 Score=23.10 Aligned_cols=62 Identities=11% Similarity=0.171 Sum_probs=33.3
Q ss_pred hhcCCeEEEeeCCCCCCCchHHHHHHHHHHHH------HHHHcCCeEEEEcCCCCChHHHHHHHHhhc
Q psy7473 74 NKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQ------RISKTGGTVYVHCKAGRTRSATLVGCYLMK 135 (136)
Q Consensus 74 ~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~------~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~ 135 (136)
...|+.+..++............+.....++. +..++-+|=+|||.+|.-=-+++.++.+++
T Consensus 47 ~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~ 114 (352)
T PRK12446 47 EKENIPYYSISSGKLRRYFDLKNIKDPFLVMKGVMDAYVRIRKLKPDVIFSKGGFVSVPVVIGGWLNR 114 (352)
T ss_pred cccCCcEEEEeccCcCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCchhhHHHHHHHHHcC
Confidence 34577887776544321212222222222222 223455788999998865445666766654
No 156
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=50.83 E-value=23 Score=25.90 Aligned_cols=14 Identities=14% Similarity=0.290 Sum_probs=10.8
Q ss_pred HHcCCeEEEEcCCC
Q psy7473 108 SKTGGTVYVHCKAG 121 (136)
Q Consensus 108 ~~~~~~VlVHC~~G 121 (136)
+..|..||.||.+|
T Consensus 107 I~~g~~ILTh~~S~ 120 (275)
T PRK08335 107 IDDGDVIITHSFSS 120 (275)
T ss_pred cCCCCEEEEECCcH
Confidence 35678999999863
No 157
>KOG1611|consensus
Probab=50.40 E-value=70 Score=23.01 Aligned_cols=70 Identities=11% Similarity=0.128 Sum_probs=39.2
Q ss_pred HHHHhcCCCEEEEcccCcccccccChhhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHHH-HcCCeEEEEcC
Q psy7473 45 NKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRIS-KTGGTVYVHCK 119 (136)
Q Consensus 45 ~~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~-~~~~~VlVHC~ 119 (136)
+.++..||++++.-+.+.|.. ..+.+.+....-+.|-++++ -...+.++.+++.+.+.. ..|-.+|+-|.
T Consensus 22 ~llk~~~i~~iiat~r~~e~a-~~~l~~k~~~d~rvHii~Ld----vt~deS~~~~~~~V~~iVg~~GlnlLinNa 92 (249)
T KOG1611|consen 22 ELLKDKGIEVIIATARDPEKA-ATELALKSKSDSRVHIIQLD----VTCDESIDNFVQEVEKIVGSDGLNLLINNA 92 (249)
T ss_pred HHhcCCCcEEEEEecCChHHh-hHHHHHhhccCCceEEEEEe----cccHHHHHHHHHHHHhhcccCCceEEEecc
Confidence 456669999999988866521 00011111112223333432 223356777777777765 45668888775
No 158
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=50.35 E-value=51 Score=24.08 Aligned_cols=36 Identities=14% Similarity=0.193 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCCCCChHHHHHHHHh
Q psy7473 98 ERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYL 133 (136)
Q Consensus 98 ~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL 133 (136)
.++++.|.+...+|+.+++.--.|.|.|-++.++.+
T Consensus 14 ~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al 49 (289)
T smart00488 14 YEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTL 49 (289)
T ss_pred HHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHH
Confidence 344555556667789999999999999977766654
No 159
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=50.35 E-value=51 Score=24.08 Aligned_cols=36 Identities=14% Similarity=0.193 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCCCCChHHHHHHHHh
Q psy7473 98 ERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYL 133 (136)
Q Consensus 98 ~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL 133 (136)
.++++.|.+...+|+.+++.--.|.|.|-++.++.+
T Consensus 14 ~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al 49 (289)
T smart00489 14 YEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTL 49 (289)
T ss_pred HHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHH
Confidence 344555556667789999999999999977766654
No 160
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=49.91 E-value=9.8 Score=24.36 Aligned_cols=40 Identities=10% Similarity=0.179 Sum_probs=19.1
Q ss_pred CeEEEeeCCCCCCCchHHHHHHHHHHHHHHH-HcCCeEEEEcCCCCCh
Q psy7473 78 VEFLQLSTRDIFDTPDQDKLERGVDFIQRIS-KTGGTVYVHCKAGRTR 124 (136)
Q Consensus 78 i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~-~~~~~VlVHC~~G~~R 124 (136)
-+.+-+-++|+ .+.++++.+.+.. ...++++|||++..+-
T Consensus 69 aDlv~iavpDd-------aI~~va~~La~~~~~~~g~iVvHtSGa~~~ 109 (127)
T PF10727_consen 69 ADLVFIAVPDD-------AIAEVAEQLAQYGAWRPGQIVVHTSGALGS 109 (127)
T ss_dssp -SEEEE-S-CC-------HHHHHHHHHHCC--S-TT-EEEES-SS--G
T ss_pred CCEEEEEechH-------HHHHHHHHHHHhccCCCCcEEEECCCCChH
Confidence 34445555552 4666666665441 2247899999976553
No 161
>KOG3354|consensus
Probab=49.58 E-value=27 Score=23.66 Aligned_cols=36 Identities=17% Similarity=0.136 Sum_probs=27.5
Q ss_pred eeCCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCCC
Q psy7473 83 LSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAG 121 (136)
Q Consensus 83 ~p~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G 121 (136)
+|+.|. +-..++..+..........|+.|.+-|++=
T Consensus 59 ipLnD~---DR~pWL~~i~~~~~~~l~~~q~vVlACSaL 94 (191)
T KOG3354|consen 59 IPLNDD---DRWPWLKKIAVELRKALASGQGVVLACSAL 94 (191)
T ss_pred CCCCcc---cccHHHHHHHHHHHHHhhcCCeEEEEhHHH
Confidence 477773 445678888888888888889999999753
No 162
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=49.22 E-value=44 Score=23.89 Aligned_cols=29 Identities=21% Similarity=0.531 Sum_probs=17.7
Q ss_pred chHHHHHHHHHHHHHHHHcCCeEEEEcCCC
Q psy7473 92 PDQDKLERGVDFIQRISKTGGTVYVHCKAG 121 (136)
Q Consensus 92 ~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G 121 (136)
...+.++++++++++... ..-+|.||.++
T Consensus 123 stl~EI~~Av~~~~~~~~-~~l~llHC~s~ 151 (241)
T PF03102_consen 123 STLEEIERAVEVLREAGN-EDLVLLHCVSS 151 (241)
T ss_dssp --HHHHHHHHHHHHHHCT---EEEEEE-SS
T ss_pred CCHHHHHHHHHHHHhcCC-CCEEEEecCCC
Confidence 345677888888855433 36899999876
No 163
>PRK10812 putative DNAse; Provisional
Probab=49.05 E-value=43 Score=24.15 Aligned_cols=30 Identities=23% Similarity=0.150 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEEcCCCCC
Q psy7473 94 QDKLERGVDFIQRISKTGGTVYVHCKAGRT 123 (136)
Q Consensus 94 ~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~ 123 (136)
..+.+-+-..++-+.+.+.||.|||..+..
T Consensus 107 ~~Q~~vf~~ql~lA~e~~~Pv~iH~r~a~~ 136 (265)
T PRK10812 107 VRQQESFRHHIQIGRELNKPVIVHTRDARA 136 (265)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEeeCchH
Confidence 344444555555666678888888876544
No 164
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=48.81 E-value=25 Score=20.38 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=14.1
Q ss_pred HHcCCeEEEEcCCCCChHHHH
Q psy7473 108 SKTGGTVYVHCKAGRTRSATL 128 (136)
Q Consensus 108 ~~~~~~VlVHC~~G~~RS~~v 128 (136)
...+++|+++|..|. |+...
T Consensus 48 ~~~~~~vvl~c~~g~-~a~~~ 67 (90)
T cd01524 48 LPKDKEIIVYCAVGL-RGYIA 67 (90)
T ss_pred cCCCCcEEEEcCCCh-hHHHH
Confidence 355689999999873 55443
No 165
>KOG1905|consensus
Probab=48.47 E-value=25 Score=26.15 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=28.7
Q ss_pred CchHHHHHHHHHHHHHHHHcCCeEEEEcCCCCChHH
Q psy7473 91 TPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSA 126 (136)
Q Consensus 91 ~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~ 126 (136)
.+..+.++.-++.+.++.++++.++||=.+|+|-++
T Consensus 35 ~D~~e~l~~kv~elA~li~~sk~lvv~tGAGISTaa 70 (353)
T KOG1905|consen 35 FDPPEVLRTKVEELAQLIQQSKHLVVYTGAGISTAA 70 (353)
T ss_pred cCCHHHHHHHHHHHHHHHhhCCcEEEEeCCcccccc
Confidence 445567777777777888889999999999998654
No 166
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=47.61 E-value=37 Score=24.46 Aligned_cols=27 Identities=19% Similarity=0.091 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEEcCCC
Q psy7473 95 DKLERGVDFIQRISKTGGTVYVHCKAG 121 (136)
Q Consensus 95 ~~~~~~~~~i~~~~~~~~~VlVHC~~G 121 (136)
.+.+.+...++-+.+.|.||.+||..+
T Consensus 133 ~q~~~f~~~~~lA~~~~~Pv~iH~~~~ 159 (293)
T cd00530 133 LEEKVLRAAARAQKETGVPISTHTQAG 159 (293)
T ss_pred HHHHHHHHHHHHHHHHCCeEEEcCCCC
Confidence 333444455666667789999999865
No 167
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=47.40 E-value=69 Score=22.81 Aligned_cols=26 Identities=15% Similarity=0.335 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEEcC
Q psy7473 94 QDKLERGVDFIQRISKTGGTVYVHCK 119 (136)
Q Consensus 94 ~~~~~~~~~~i~~~~~~~~~VlVHC~ 119 (136)
...-.++++.++...++|+.|..|=-
T Consensus 51 l~~~~~f~~~L~~~~~~Gg~I~lHGY 76 (243)
T PF10096_consen 51 LSDNPEFVEYLRYLQARGGEIVLHGY 76 (243)
T ss_pred chhhHHHHHHHHHHHhcCCEEEEEec
Confidence 34457888888888899999999963
No 168
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=46.63 E-value=39 Score=23.44 Aligned_cols=24 Identities=13% Similarity=0.051 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCCC
Q psy7473 98 ERGVDFIQRISKTGGTVYVHCKAG 121 (136)
Q Consensus 98 ~~~~~~i~~~~~~~~~VlVHC~~G 121 (136)
+.+-.+++.+.+.+.||.+||..+
T Consensus 108 ~~~~~~~~~a~e~~~pv~iH~~~~ 131 (251)
T cd01310 108 EVFRAQLELAKELNLPVVIHSRDA 131 (251)
T ss_pred HHHHHHHHHHHHhCCCeEEEeeCc
Confidence 334445555666788999999754
No 169
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=46.56 E-value=1.4e+02 Score=23.39 Aligned_cols=83 Identities=12% Similarity=0.241 Sum_probs=48.1
Q ss_pred HHhcCCCEEEEcccCcccccccChhhhhhc-----CCeEEEeeCCCCC-------CCchHHHHHHHHHHHHHHHHcC-Ce
Q psy7473 47 LLEENVKGVVSMNEDYELYFANGREEWNKV-----GVEFLQLSTRDIF-------DTPDQDKLERGVDFIQRISKTG-GT 113 (136)
Q Consensus 47 l~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~-----~i~~~~~p~~D~~-------~~~~~~~~~~~~~~i~~~~~~~-~~ 113 (136)
-.++|-.+|-+|++.... ...... .+-.=.+|+-+.. .....-.-+.+++.|+++.++| .=
T Consensus 86 A~~~GADtiMDLStggdl------~~iR~~il~~s~vpvGTVPiYqa~~~~~~k~~~~~~mt~d~~~~~ie~qa~~GVDf 159 (431)
T PRK13352 86 AVKYGADTIMDLSTGGDL------DEIRRAIIEASPVPVGTVPIYQAAVEAARKYGSVVDMTEDDLFDVIEKQAKDGVDF 159 (431)
T ss_pred HHHcCCCeEeeccCCCCH------HHHHHHHHHcCCCCCcChhHHHHHHHHHhcCCChhhCCHHHHHHHHHHHHHhCCCE
Confidence 345999999999987753 222111 1111122221100 0111112356677787887776 46
Q ss_pred EEEEcCC----------------CCChHHHHHHHHhhc
Q psy7473 114 VYVHCKA----------------GRTRSATLVGCYLMK 135 (136)
Q Consensus 114 VlVHC~~----------------G~~RS~~v~~ayLm~ 135 (136)
+-|||.- =+||-|++.++|+++
T Consensus 160 mTiHcGi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~ 197 (431)
T PRK13352 160 MTIHCGVTRETLERLKKSGRIMGIVSRGGSFLAAWMLH 197 (431)
T ss_pred EEEccchhHHHHHHHHhcCCccCeecCCHHHHHHHHHH
Confidence 8899941 168999999999875
No 170
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=46.11 E-value=20 Score=25.52 Aligned_cols=35 Identities=11% Similarity=0.098 Sum_probs=21.2
Q ss_pred CchHHHHHHHHHHHHHHHHcCCeEEEEcCCCCChH
Q psy7473 91 TPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRS 125 (136)
Q Consensus 91 ~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS 125 (136)
.+...+.+-+.+.++-+.+.+.||.|||.....+.
T Consensus 104 ~~~~~Q~~vF~~ql~lA~~~~~pv~iH~r~a~~~~ 138 (255)
T PF01026_consen 104 EDKEVQEEVFERQLELAKELNLPVSIHCRKAHEEL 138 (255)
T ss_dssp SGHHHHHHHHHHHHHHHHHHTCEEEEEEESHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhCCcEEEecCCcHHHH
Confidence 34445555555666666666778888887654433
No 171
>PLN02449 ferrochelatase
Probab=46.10 E-value=94 Score=24.81 Aligned_cols=80 Identities=11% Similarity=0.043 Sum_probs=46.2
Q ss_pred cccccCcEEEeCCCCcccHHHHHhcCCCEEEEcccCccc-c------cc-cChhhhhhcCC-eEEEeeCCCCCCCchHHH
Q psy7473 26 YDRIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYEL-Y------FA-NGREEWNKVGV-EFLQLSTRDIFDTPDQDK 96 (136)
Q Consensus 26 ~~~i~~~l~~g~~~~~~~~~~l~~~gi~~Vi~l~~~~~~-~------~~-~~~~~~~~~~i-~~~~~p~~D~~~~~~~~~ 96 (136)
-+++.|.=|++... .+..+.|.+.|++.|+-+.-..-. + +. ...+.+.+.|+ .|.++|..++. + ..
T Consensus 327 QSR~Gp~eWL~P~t-~d~L~~L~~~Gvk~VlvvPigFvSDhiETL~EiDiE~re~a~e~G~~~~~rVP~LN~~-p---~F 401 (485)
T PLN02449 327 QSRVGPVEWLKPYT-DETIVELGKKGVKSLLAVPISFVSEHIETLEEIDMEYRELALESGIENWGRVPALGCE-P---TF 401 (485)
T ss_pred eCCCCCCCCCCCCH-HHHHHHHHHcCCCeEEEECCcccccchHHHHHHHHHHHHHHHHcCCceEEEcCCCCCC-H---HH
Confidence 44555555666542 334567888999998876543211 0 00 01233456788 69999987754 3 44
Q ss_pred HHHHHHHHHHHHHc
Q psy7473 97 LERGVDFIQRISKT 110 (136)
Q Consensus 97 ~~~~~~~i~~~~~~ 110 (136)
++.+.+.+.+.+..
T Consensus 402 I~~La~lV~~~l~~ 415 (485)
T PLN02449 402 ISDLADAVIEALPY 415 (485)
T ss_pred HHHHHHHHHHHhhc
Confidence 55555666666553
No 172
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=45.59 E-value=54 Score=21.24 Aligned_cols=23 Identities=9% Similarity=0.182 Sum_probs=15.0
Q ss_pred HcCCeEEEEcCCCCChHHHHHHHHh
Q psy7473 109 KTGGTVYVHCKAGRTRSATLVGCYL 133 (136)
Q Consensus 109 ~~~~~VlVHC~~G~~RS~~v~~ayL 133 (136)
..+.+|+|+|..| .+| ..++..|
T Consensus 47 ~~~~~vVv~c~~g-~~a-~~aa~~L 69 (145)
T cd01535 47 PAAERYVLTCGSS-LLA-RFAAADL 69 (145)
T ss_pred CCCCCEEEEeCCC-hHH-HHHHHHH
Confidence 3467999999987 355 4444443
No 173
>KOG1529|consensus
Probab=45.28 E-value=23 Score=26.01 Aligned_cols=27 Identities=22% Similarity=0.153 Sum_probs=21.0
Q ss_pred HHHcCCeEEEEcCCCCChHHHHHHHHh
Q psy7473 107 ISKTGGTVYVHCKAGRTRSATLVGCYL 133 (136)
Q Consensus 107 ~~~~~~~VlVHC~~G~~RS~~v~~ayL 133 (136)
.+..++||.+=|..|++-+-..+++++
T Consensus 232 ~l~~~~p~~~sC~~Gisa~~i~~al~r 258 (286)
T KOG1529|consen 232 GLKLSKPVIVSCGTGISASIIALALER 258 (286)
T ss_pred CcccCCCEEEeeccchhHHHHHHHHHh
Confidence 345678999999999987777666654
No 174
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=45.15 E-value=78 Score=20.02 Aligned_cols=46 Identities=22% Similarity=0.389 Sum_probs=27.2
Q ss_pred hhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCCCCChH
Q psy7473 71 EEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRS 125 (136)
Q Consensus 71 ~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS 125 (136)
+.++..|.+..+.|-.|.. .++.+++.+.+ ....+|+|-+..| ||-
T Consensus 53 ~~~~~~~~~~~~~p~kD~T------D~e~Al~~~~~--~~~~~i~v~Ga~G-gR~ 98 (123)
T PF04263_consen 53 EFYKSKGVEIIHFPEKDYT------DLEKALEYAIE--QGPDEIIVLGALG-GRF 98 (123)
T ss_dssp HHHHHCTTEEEEE-STTS-------HHHHHHHHHHH--TTTSEEEEES-SS-SSH
T ss_pred HHHHhhccceecccccccC------HHHHHHHHHHH--CCCCEEEEEecCC-CcH
Confidence 3345678888899944432 45566665533 2335788888888 575
No 175
>PRK10425 DNase TatD; Provisional
Probab=45.13 E-value=41 Score=24.18 Aligned_cols=27 Identities=15% Similarity=0.303 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEEcCCC
Q psy7473 95 DKLERGVDFIQRISKTGGTVYVHCKAG 121 (136)
Q Consensus 95 ~~~~~~~~~i~~~~~~~~~VlVHC~~G 121 (136)
.+.+-+-.+++-+.+.+.||.|||..-
T Consensus 105 ~Q~~vF~~ql~lA~~~~~Pv~iH~r~a 131 (258)
T PRK10425 105 EQERAFVAQLAIAAELNMPVFMHCRDA 131 (258)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeCc
Confidence 344555555666666677888888643
No 176
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=44.98 E-value=68 Score=21.87 Aligned_cols=33 Identities=27% Similarity=0.413 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEEEEcCCCCChHHHH
Q psy7473 93 DQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATL 128 (136)
Q Consensus 93 ~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v 128 (136)
..+.++++++.|.++..+|++|++ | |.|.|+.+
T Consensus 26 ~~~~i~~a~~~i~~al~~~~rI~i-~--G~G~S~~~ 58 (192)
T PRK00414 26 NIHAIQRAAVLIADSFKAGGKVLS-C--GNGGSHCD 58 (192)
T ss_pred hHHHHHHHHHHHHHHHHCCCEEEE-E--eCcHHHHH
Confidence 347899999999999999999977 5 55566554
No 177
>COG3233 Predicted deacetylase [General function prediction only]
Probab=44.03 E-value=53 Score=23.35 Aligned_cols=67 Identities=13% Similarity=0.092 Sum_probs=41.1
Q ss_pred CCEEEEcccCccc---ccccChhhhhhcCCeE-EEeeCCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCC
Q psy7473 52 VKGVVSMNEDYEL---YFANGREEWNKVGVEF-LQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKA 120 (136)
Q Consensus 52 i~~Vi~l~~~~~~---~~~~~~~~~~~~~i~~-~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~ 120 (136)
+..+.|+++.... .+....+++...++++ +-+|=.+.. ...+.-+++++.+.+..++|..+.+|=..
T Consensus 6 iillhdVSpv~~~~~~~i~~~ide~~~~~~t~lLViPn~~~~--~~l~~d~rf~~~l~~r~e~Gdel~lHGy~ 76 (233)
T COG3233 6 IILLHDVSPVYWPTLSNIDAAIDEYGAQNSTVLLVIPNHAND--YPLSKDPRFVDLLTEREEEGDELVLHGYD 76 (233)
T ss_pred eEEEEecCcccchhHHHHHHHHHHhCCCCceEEEEeeccCCC--CCcccChHHHHHHHHHHhcCCEEEEechh
Confidence 3455666654332 1111223445577787 566644433 33344578999999999999999999643
No 178
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=43.99 E-value=60 Score=27.03 Aligned_cols=41 Identities=15% Similarity=0.366 Sum_probs=24.5
Q ss_pred hhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHHHHc--CCeEEEEcCC
Q psy7473 72 EWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKT--GGTVYVHCKA 120 (136)
Q Consensus 72 ~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~--~~~VlVHC~~ 120 (136)
.|+.-|++|+. |++.++ +++..+.++++.+. ++|++||+..
T Consensus 277 ~fe~~G~~y~g-~iDGHd-------~~~L~~al~~~k~~~~~~P~vihv~T 319 (677)
T PLN02582 277 LFEELGLYYIG-PVDGHN-------IDDLVTILREVKSTKTTGPVLIHVVT 319 (677)
T ss_pred hHHHcCCeEEe-eeCCCC-------HHHHHHHHHHHHhcCCCCCEEEEEEe
Confidence 36667777752 564432 34444555555443 6899999954
No 179
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=43.96 E-value=76 Score=25.05 Aligned_cols=69 Identities=7% Similarity=0.016 Sum_probs=40.1
Q ss_pred CCEEEEcccCcccccccChhhhhhcCCeEEEeeCCCCCC-------------CchHHHHHHHHHHHHHHHHcCCeEEEEc
Q psy7473 52 VKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFD-------------TPDQDKLERGVDFIQRISKTGGTVYVHC 118 (136)
Q Consensus 52 i~~Vi~l~~~~~~~~~~~~~~~~~~~i~~~~~p~~D~~~-------------~~~~~~~~~~~~~i~~~~~~~~~VlVHC 118 (136)
=+.|||+.+.....-..........|+.|+..|+..... +...+.++.+++.|-.....|.|...||
T Consensus 82 GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~siM~GG~~~a~~~~~piL~~ia~~~~~g~~c~~~v 161 (459)
T PRK09287 82 GDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGPSIMPGGQKEAYELVAPILEKIAAKVEDGEPCVTYI 161 (459)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCEEEEeCCHHHHHHHHHHHHHHhhhhcCCCCceeee
Confidence 467888886543211112344567899999999987531 1122334444444433333677888998
Q ss_pred CC
Q psy7473 119 KA 120 (136)
Q Consensus 119 ~~ 120 (136)
..
T Consensus 162 G~ 163 (459)
T PRK09287 162 GP 163 (459)
T ss_pred CC
Confidence 54
No 180
>PLN02790 transketolase
Probab=43.51 E-value=46 Score=27.46 Aligned_cols=47 Identities=6% Similarity=0.049 Sum_probs=27.7
Q ss_pred hhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHHHH-cCCeEEEEcCCCCCh
Q psy7473 71 EEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISK-TGGTVYVHCKAGRTR 124 (136)
Q Consensus 71 ~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~-~~~~VlVHC~~G~~R 124 (136)
+.++..|++++. ++|.. . +++++.+.++++.+ .++|++|||..=+|+
T Consensus 194 ~~f~a~G~~~~~--vdgg~--h---d~~~l~~a~~~a~~~~~~P~lI~~~T~kG~ 241 (654)
T PLN02790 194 KRYEALGWHTIW--VKNGN--T---DYDEIRAAIKEAKAVTDKPTLIKVTTTIGY 241 (654)
T ss_pred HHHHHcCCeEEE--ECCCC--C---CHHHHHHHHHHHHhcCCCeEEEEEEEeecC
Confidence 456667888775 33321 1 23444455555554 578999999764443
No 181
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=43.38 E-value=66 Score=22.31 Aligned_cols=25 Identities=16% Similarity=0.050 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHcCCeEEEEcCC
Q psy7473 96 KLERGVDFIQRISKTGGTVYVHCKA 120 (136)
Q Consensus 96 ~~~~~~~~i~~~~~~~~~VlVHC~~ 120 (136)
+.+.+.+.++.+.+.|.+|.+||..
T Consensus 106 q~~~~~~~~~~a~~~~~pv~iH~~~ 130 (252)
T TIGR00010 106 QEEVFRAQLQLAEELNLPVIIHARD 130 (252)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEecC
Confidence 3344445566667778999999974
No 182
>PRK05993 short chain dehydrogenase; Provisional
Probab=43.35 E-value=1e+02 Score=21.89 Aligned_cols=63 Identities=11% Similarity=0.114 Sum_probs=30.5
Q ss_pred HHHHhcCCCEEEEcccCcccccccChhhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcC
Q psy7473 45 NKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCK 119 (136)
Q Consensus 45 ~~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~ 119 (136)
..|.+.|.+.++..+.+.. .+.....+++++...+.| .+.++++++.+.+.....=.++|||.
T Consensus 22 ~~l~~~G~~Vi~~~r~~~~------~~~l~~~~~~~~~~Dl~d------~~~~~~~~~~~~~~~~g~id~li~~A 84 (277)
T PRK05993 22 RALQSDGWRVFATCRKEED------VAALEAEGLEAFQLDYAE------PESIAALVAQVLELSGGRLDALFNNG 84 (277)
T ss_pred HHHHHCCCEEEEEECCHHH------HHHHHHCCceEEEccCCC------HHHHHHHHHHHHHHcCCCccEEEECC
Confidence 4566788865554433321 222333455554443332 23455555544332211226899985
No 183
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=43.21 E-value=48 Score=23.57 Aligned_cols=27 Identities=19% Similarity=0.335 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHcCCeEEEEcCCCC
Q psy7473 96 KLERGVDFIQRISKTGGTVYVHCKAGR 122 (136)
Q Consensus 96 ~~~~~~~~i~~~~~~~~~VlVHC~~G~ 122 (136)
...++++.+++....+.++++||..|-
T Consensus 134 a~~~~l~il~~~~~~~~~~i~H~f~g~ 160 (255)
T PF01026_consen 134 AHEELLEILKEYGPPNLRVIFHCFSGS 160 (255)
T ss_dssp HHHHHHHHHHHTTGGTSEEEETT--S-
T ss_pred cHHHHHHHHHhccccceeEEEecCCCC
Confidence 456666666666544458999998884
No 184
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=43.09 E-value=13 Score=22.31 Aligned_cols=19 Identities=11% Similarity=0.293 Sum_probs=15.6
Q ss_pred CCccccccCcEEEeCCCCc
Q psy7473 23 RRWYDRIDENIILGALPFK 41 (136)
Q Consensus 23 ~~~~~~i~~~l~~g~~~~~ 41 (136)
..|+-+|.+++|+|+....
T Consensus 18 t~wllEv~~GVyVg~~s~r 36 (87)
T TIGR01873 18 ALWLLEPRAGVYVGGVSAS 36 (87)
T ss_pred hhheeecCCCcEEcCCCHH
Confidence 4688999999999977543
No 185
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=42.82 E-value=33 Score=25.45 Aligned_cols=13 Identities=62% Similarity=1.104 Sum_probs=10.7
Q ss_pred HcCCeEEEEcCCC
Q psy7473 109 KTGGTVYVHCKAG 121 (136)
Q Consensus 109 ~~~~~VlVHC~~G 121 (136)
..|..||.||.+|
T Consensus 117 ~~g~~ILT~~~Sg 129 (303)
T TIGR00524 117 KDGDTVLTHCNAG 129 (303)
T ss_pred cCCCEEEEecCCc
Confidence 4677899999885
No 186
>COG5456 Predicted integral membrane protein linked to a cation pump [Inorganic ion transport and metabolism]
Probab=42.29 E-value=34 Score=22.71 Aligned_cols=52 Identities=21% Similarity=0.304 Sum_probs=38.7
Q ss_pred hhHHHHHHHHhcCCCccccccCcEEEeCCCCcccHHH---HHhcCCCEEEEcccC
Q psy7473 10 SLFYNVFMEKVTSRRWYDRIDENIILGALPFKRLTNK---LLEENVKGVVSMNED 61 (136)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~---l~~~gi~~Vi~l~~~ 61 (136)
-+..|.+|.++..+.|...|.+|-|+.++......++ -...|++........
T Consensus 29 iIaVnlvma~~A~~SwSGlVv~NtYvAsqqFN~ka~~gra~AAlGw~gkltv~~~ 83 (166)
T COG5456 29 IIAVNLVMAWNASRSWSGLVVENTYVASQQFNRKAEEGRAQAALGWKGKLTVDGG 83 (166)
T ss_pred HHHHHHHHHHHhhccccceEecchhHHHHHHHHHHHhhHHHhhcCcceeEEecCC
Confidence 3467788999999999999999999999876544332 333788876655443
No 187
>KOG0235|consensus
Probab=42.24 E-value=54 Score=23.10 Aligned_cols=32 Identities=28% Similarity=0.389 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHH----HHHcCCeEEEEcCCCCChH
Q psy7473 94 QDKLERGVDFIQR----ISKTGGTVYVHCKAGRTRS 125 (136)
Q Consensus 94 ~~~~~~~~~~i~~----~~~~~~~VlVHC~~G~~RS 125 (136)
...+.++..+.++ ...+|+.|+|+|.+..-|+
T Consensus 135 ~~~~~R~~~~~~e~i~~~~~~gk~Vli~aHGnsLR~ 170 (214)
T KOG0235|consen 135 KDCLDRLLPFWNEEIAKESKEGKNVLIVAHGNSLRA 170 (214)
T ss_pred HHHHHHHHHHHHHhhhhhhcCCcEEEEEcCcHHHHH
Confidence 3445555555554 3467899999998755555
No 188
>PRK15129 L-Ala-D/L-Glu epimerase; Provisional
Probab=42.02 E-value=30 Score=25.65 Aligned_cols=25 Identities=12% Similarity=0.234 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHcCCeEEEEcCCC
Q psy7473 97 LERGVDFIQRISKTGGTVYVHCKAG 121 (136)
Q Consensus 97 ~~~~~~~i~~~~~~~~~VlVHC~~G 121 (136)
+.++.+.++.+.+.|-++.+||..+
T Consensus 254 i~~a~~i~~~a~~~gi~~~~g~~~e 278 (321)
T PRK15129 254 LTEALALATEARAQGFALMLGCMLC 278 (321)
T ss_pred HHHHHHHHHHHHHcCCcEEEecchH
Confidence 3455566666677888999999843
No 189
>KOG3020|consensus
Probab=41.43 E-value=36 Score=25.24 Aligned_cols=9 Identities=44% Similarity=0.586 Sum_probs=5.4
Q ss_pred eEEEEcCCC
Q psy7473 113 TVYVHCKAG 121 (136)
Q Consensus 113 ~VlVHC~~G 121 (136)
+|.+||..|
T Consensus 176 ~vvvHsFtG 184 (296)
T KOG3020|consen 176 KVVVHSFTG 184 (296)
T ss_pred ceEEEeccC
Confidence 566666555
No 190
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=41.13 E-value=1.3e+02 Score=22.65 Aligned_cols=29 Identities=14% Similarity=0.405 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHcC-CeEEEEcCCC
Q psy7473 93 DQDKLERGVDFIQRISKTG-GTVYVHCKAG 121 (136)
Q Consensus 93 ~~~~~~~~~~~i~~~~~~~-~~VlVHC~~G 121 (136)
..+.++.+++.+.+.-..+ .-+|.||..+
T Consensus 144 tl~Ei~~Av~~i~~~G~~~~~i~llhC~s~ 173 (329)
T TIGR03569 144 TLEEIEAAVGVLRDAGTPDSNITLLHCTTE 173 (329)
T ss_pred CHHHHHHHHHHHHHcCCCcCcEEEEEECCC
Confidence 4566777777775432211 3689999875
No 191
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=41.11 E-value=1.2e+02 Score=21.70 Aligned_cols=74 Identities=11% Similarity=0.089 Sum_probs=41.7
Q ss_pred HHHHhcCCCEEEEcccCcccccccChhhhhhcCCeEEEe---eCCCCCC--CchHHHHHHHHHHHHHHHHcCCeEEEEcC
Q psy7473 45 NKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQL---STRDIFD--TPDQDKLERGVDFIQRISKTGGTVYVHCK 119 (136)
Q Consensus 45 ~~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~i~~~~~---p~~D~~~--~~~~~~~~~~~~~i~~~~~~~~~VlVHC~ 119 (136)
..|+..|++.|--+++..+.--....+.++..|++...+ .+.|... .-..+.+.+++..++. ..-..|++=|.
T Consensus 113 ~AL~alg~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~--~~aDAifisCT 190 (239)
T TIGR02990 113 DGLAALGVRRISLLTPYTPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFD--PDADALFLSCT 190 (239)
T ss_pred HHHHHcCCCEEEEECCCcHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcC--CCCCEEEEeCC
Confidence 458889999998888765421111234567899988766 3433221 1223444444433321 23357888897
Q ss_pred C
Q psy7473 120 A 120 (136)
Q Consensus 120 ~ 120 (136)
+
T Consensus 191 n 191 (239)
T TIGR02990 191 A 191 (239)
T ss_pred C
Confidence 4
No 192
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=41.07 E-value=89 Score=20.26 Aligned_cols=34 Identities=15% Similarity=0.292 Sum_probs=23.3
Q ss_pred cccccCcEEEeCCCCcccHHHHHh--cCCCEEEEcc
Q psy7473 26 YDRIDENIILGALPFKRLTNKLLE--ENVKGVVSMN 59 (136)
Q Consensus 26 ~~~i~~~l~~g~~~~~~~~~~l~~--~gi~~Vi~l~ 59 (136)
.......||+++++.....+.|++ ..+-.|.++.
T Consensus 30 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~ 65 (144)
T PLN03134 30 LRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAK 65 (144)
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEE
Confidence 445556799999998888777776 3444555543
No 193
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=40.95 E-value=60 Score=20.15 Aligned_cols=39 Identities=15% Similarity=0.213 Sum_probs=27.1
Q ss_pred CCCEEEEcccCccc-----ccccChhhhhhcCCeEEEeeCCCCC
Q psy7473 51 NVKGVVSMNEDYEL-----YFANGREEWNKVGVEFLQLSTRDIF 89 (136)
Q Consensus 51 gi~~Vi~l~~~~~~-----~~~~~~~~~~~~~i~~~~~p~~D~~ 89 (136)
++..|+|+.+.+.. .+....+.+...|++.+-+|..+..
T Consensus 22 kv~LIVNvAs~Cg~t~qy~~L~~L~~ky~~~gl~ILaFPcnqFg 65 (108)
T PF00255_consen 22 KVLLIVNVASKCGYTKQYKQLNELYEKYKDKGLEILAFPCNQFG 65 (108)
T ss_dssp SEEEEEEEESSSTTHHHHHHHHHHHHHHGGGTEEEEEEEBSTTT
T ss_pred CEEEEEecccccCCccccHHHHHHHHHHhcCCeEEEeeehHHhc
Confidence 67788998887643 1111124456689999999999975
No 194
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=40.53 E-value=97 Score=20.54 Aligned_cols=34 Identities=18% Similarity=0.318 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEEEEcCCCCChHHHHH
Q psy7473 93 DQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLV 129 (136)
Q Consensus 93 ~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~ 129 (136)
..+.++++++.|.+.+.++++|++. |.|.|..++
T Consensus 15 ~~~~i~~a~~~i~~~i~~~~~I~i~---G~G~S~~~A 48 (177)
T cd05006 15 LAEAIEQAAQLLAEALLNGGKILIC---GNGGSAADA 48 (177)
T ss_pred hHHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHH
Confidence 4578899999999988888888774 455665554
No 195
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=40.23 E-value=84 Score=24.65 Aligned_cols=46 Identities=20% Similarity=0.188 Sum_probs=27.6
Q ss_pred hhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCC
Q psy7473 71 EEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKA 120 (136)
Q Consensus 71 ~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~ 120 (136)
.+....|+. .+-+.|...--.+....+.++.|.+... =+|-+||++
T Consensus 163 kel~~~g~D--SIciKDmaGlltP~~ayelVk~iK~~~~--~pv~lHtH~ 208 (472)
T COG5016 163 KELLEMGVD--SICIKDMAGLLTPYEAYELVKAIKKELP--VPVELHTHA 208 (472)
T ss_pred HHHHHcCCC--EEEeecccccCChHHHHHHHHHHHHhcC--CeeEEeccc
Confidence 334445554 4556776644555556666766666544 578888864
No 196
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=39.65 E-value=97 Score=25.57 Aligned_cols=36 Identities=17% Similarity=0.281 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEEEEcCCCCChHHHHH
Q psy7473 93 DQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLV 129 (136)
Q Consensus 93 ~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~ 129 (136)
..+...++++.|.+.+++||+|+|=|.+ +||+-=++
T Consensus 384 r~~~e~~l~~~I~~tl~~gG~VLIP~fa-vGR~QEll 419 (630)
T TIGR03675 384 REEAEKELIKVVNETIKRGGKVLIPVFA-VGRAQEVM 419 (630)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEech-hHHHHHHH
Confidence 3455678889999999999999999987 67875554
No 197
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=39.63 E-value=15 Score=22.43 Aligned_cols=19 Identities=11% Similarity=0.412 Sum_probs=15.6
Q ss_pred CCccccccCcEEEeCCCCc
Q psy7473 23 RRWYDRIDENIILGALPFK 41 (136)
Q Consensus 23 ~~~~~~i~~~l~~g~~~~~ 41 (136)
..|.-+|.+++|+|+....
T Consensus 20 t~wllEv~~GVyVg~~S~r 38 (97)
T PRK11558 20 AVWLLEVRAGVYVGDVSRR 38 (97)
T ss_pred hhheEecCCCcEEcCCCHH
Confidence 5688999999999976543
No 198
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=39.53 E-value=1.5e+02 Score=22.32 Aligned_cols=74 Identities=12% Similarity=0.047 Sum_probs=38.8
Q ss_pred HHHHhcCCCEEEEcccCcccccccChhhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCCCC
Q psy7473 45 NKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGR 122 (136)
Q Consensus 45 ~~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~ 122 (136)
+.|.+.|.+.+|-....... ........|+.++++|............+......+.+...+.++=+|||....
T Consensus 25 ~~L~~~G~~V~v~~~~~~~~----~~~~~~~~~i~v~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~DiIh~~~~~ 98 (398)
T cd03796 25 QCLIKRGHKVVVITHAYGNR----VGIRYLTNGLKVYYLPFVVFYNQSTLPTFFGTFPLLRNILIRERITIVHGHQAF 98 (398)
T ss_pred HHHHHcCCeeEEEeccCCcC----CCcccccCceeEEEecceeccCCccccchhhhHHHHHHHHHhcCCCEEEECCCC
Confidence 45777888766644332210 011223457788888764322111111223344455555555678899998653
No 199
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=39.30 E-value=54 Score=27.00 Aligned_cols=42 Identities=17% Similarity=0.340 Sum_probs=25.1
Q ss_pred hhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHHHH-cCCeEEEEcCC
Q psy7473 71 EEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISK-TGGTVYVHCKA 120 (136)
Q Consensus 71 ~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~-~~~~VlVHC~~ 120 (136)
..++.-|++|+. |+ |.+ +++++.+.++++.+ .++|++|||..
T Consensus 240 ~~f~a~G~~~~~-~v-dGh------d~~~l~~al~~ak~~~~~P~~I~~~T 282 (641)
T PRK12571 240 TLFEELGFTYVG-PI-DGH------DMEALLSVLRAARARADGPVLVHVVT 282 (641)
T ss_pred hHHHHcCCEEEC-cc-CCC------CHHHHHHHHHHHHhCCCCCEEEEEEe
Confidence 456667777751 44 432 23444455555544 57899999964
No 200
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=39.25 E-value=1.5e+02 Score=21.58 Aligned_cols=70 Identities=11% Similarity=0.005 Sum_probs=38.9
Q ss_pred eCCCCcccHHHHHhcCCCEEEEcccCcccccccChhhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHH
Q psy7473 36 GALPFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQR 106 (136)
Q Consensus 36 g~~~~~~~~~~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~ 106 (136)
|.+..+.+...+.+++|+.||+=.+...-......+...+.|+..+-+--+ ...+....++.+..+.+.+
T Consensus 181 GPfs~~~n~all~q~~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~Rp-~~~~~~~~~v~~~~~~l~~ 250 (257)
T COG2099 181 GPFSEEDNKALLEQYRIDVVVTKNSGGAGGTYEKIEAARELGIPVIMIERP-IDYPAGFGDVTDLDAALAQ 250 (257)
T ss_pred CCcChHHHHHHHHHhCCCEEEEccCCcccCcHHHHHHHHHcCCcEEEEecC-CcCCcccchhhHHHHHHHH
Confidence 345555566778889999999766543311111223345678887776544 1123444445555444444
No 201
>cd04861 LigD_Pol_like LigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. Mycobacterium tuberculosis (Mt)LigD, also found in this group, is monomeric and contains the same modules but these are arranged differently: an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase do
Probab=39.24 E-value=1.2e+02 Score=21.57 Aligned_cols=51 Identities=22% Similarity=0.358 Sum_probs=27.6
Q ss_pred cCCeEEEeeCCCCCCCchHHHHHHHHHHHHHH---------------HHcCCeEEEEcC-CCCChHHHHHHHH
Q psy7473 76 VGVEFLQLSTRDIFDTPDQDKLERGVDFIQRI---------------SKTGGTVYVHCK-AGRTRSATLVGCY 132 (136)
Q Consensus 76 ~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~---------------~~~~~~VlVHC~-~G~~RS~~v~~ay 132 (136)
.|+ ++.+|+.... ..+....+.+.|.+. .+++++|+|=.. .|.|+ |+++.|
T Consensus 142 kGl-HV~vPl~~~~---~~~~~r~fa~~iA~~l~~~~P~~~t~~~~k~~R~grvfiDy~qN~~g~--T~vapY 208 (227)
T cd04861 142 KGL-HVYVPLAPRY---TWDEVRAFAKALARELARRLPDLFTAEMAKAKRGGKIFVDYLQNARGK--TTVAPY 208 (227)
T ss_pred CeE-EEEEEcCCCC---CHHHHHHHHHHHHHHHHHHCchhhhhHhhHHhCCCCEEEECccCCCCC--eEEecc
Confidence 344 4567887533 233444444444332 246899999874 45444 455544
No 202
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=39.19 E-value=53 Score=21.16 Aligned_cols=21 Identities=14% Similarity=0.294 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHcCCeEEEEc
Q psy7473 98 ERGVDFIQRISKTGGTVYVHC 118 (136)
Q Consensus 98 ~~~~~~i~~~~~~~~~VlVHC 118 (136)
+++-+.++++.+.++|.+|++
T Consensus 133 ~el~~al~~a~~~~gp~vIeV 153 (153)
T PF02775_consen 133 EELEEALREALESGGPAVIEV 153 (153)
T ss_dssp HHHHHHHHHHHHSSSEEEEEE
T ss_pred HHHHHHHHHHHhCCCcEEEEc
Confidence 455566667778899999985
No 203
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=38.91 E-value=61 Score=21.74 Aligned_cols=52 Identities=10% Similarity=0.174 Sum_probs=32.1
Q ss_pred cCCCEEEEcccCccc--ccc---cChhhhhhcCCeEEEeeCCCCC--CCchHHHHHHHH
Q psy7473 50 ENVKGVVSMNEDYEL--YFA---NGREEWNKVGVEFLQLSTRDIF--DTPDQDKLERGV 101 (136)
Q Consensus 50 ~gi~~Vi~l~~~~~~--~~~---~~~~~~~~~~i~~~~~p~~D~~--~~~~~~~~~~~~ 101 (136)
-.+-.|||..+.+-. ++. ..-+.+...|++.+-+|..+.. ++.+.+.+.+++
T Consensus 25 GkVlLIVNtASkCGfTpQYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC 83 (162)
T COG0386 25 GKVLLIVNTASKCGFTPQYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKFC 83 (162)
T ss_pred CcEEEEEEcccccCCcHhHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHHH
Confidence 355677787776533 111 1124566799999999999886 344455555444
No 204
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=38.87 E-value=45 Score=19.41 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHcCCeEEEEcCCC
Q psy7473 96 KLERGVDFIQRISKTGGTVYVHCKAG 121 (136)
Q Consensus 96 ~~~~~~~~i~~~~~~~~~VlVHC~~G 121 (136)
++.++++.+ ... ..++++|++.+|
T Consensus 73 ~~~~v~~~i-~~~-~~~~~vis~~ag 96 (96)
T PF03807_consen 73 QLPEVLSEI-PHL-LKGKLVISIAAG 96 (96)
T ss_dssp GHHHHHHHH-HHH-HTTSEEEEESTT
T ss_pred HHHHHHHHH-hhc-cCCCEEEEeCCC
Confidence 345555655 222 347899999987
No 205
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=38.85 E-value=79 Score=25.71 Aligned_cols=42 Identities=10% Similarity=0.230 Sum_probs=24.9
Q ss_pred hhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCCC
Q psy7473 72 EWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAG 121 (136)
Q Consensus 72 ~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G 121 (136)
.++..|+.++. +.|.. +++++.+.++++.+.++|++|||..=
T Consensus 202 ~~~a~G~~~~~--v~DG~------D~~~l~~a~~~a~~~~gP~~i~~~T~ 243 (581)
T PRK12315 202 LFKAMGLDYRY--VEDGN------DIESLIEAFKEVKDIDHPIVLHIHTL 243 (581)
T ss_pred HHHhcCCeEEE--eeCCC------CHHHHHHHHHHHHhCCCCEEEEEEee
Confidence 45566777654 43432 23444455555556678999999653
No 206
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=38.64 E-value=1.5e+02 Score=21.26 Aligned_cols=75 Identities=11% Similarity=-0.015 Sum_probs=42.8
Q ss_pred HHHhcCCCEEEEcccCccc---ccccChhhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCCCC
Q psy7473 46 KLLEENVKGVVSMNEDYEL---YFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGR 122 (136)
Q Consensus 46 ~l~~~gi~~Vi~l~~~~~~---~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~ 122 (136)
..++.|....+++...... .+....+.....|... +-+.|....-.++.+.+.++.+++.... .++-+||+.-.
T Consensus 120 ~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~--i~l~DT~G~~~P~~v~~lv~~l~~~~~~-~~l~~H~Hn~~ 196 (263)
T cd07943 120 AARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADC--VYVTDSAGAMLPDDVRERVRALREALDP-TPVGFHGHNNL 196 (263)
T ss_pred HHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCE--EEEcCCCCCcCHHHHHHHHHHHHHhCCC-ceEEEEecCCc
Confidence 3455777777766322111 0000112223345554 4567776667778888888888765432 48999998654
Q ss_pred C
Q psy7473 123 T 123 (136)
Q Consensus 123 ~ 123 (136)
|
T Consensus 197 G 197 (263)
T cd07943 197 G 197 (263)
T ss_pred c
Confidence 4
No 207
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=38.21 E-value=1.3e+02 Score=22.44 Aligned_cols=76 Identities=17% Similarity=0.170 Sum_probs=41.4
Q ss_pred CcEEEeCCCCcccHHHHHhcCCCEEEEcccCccc--ccccChhhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHH
Q psy7473 31 ENIILGALPFKRLTNKLLEENVKGVVSMNEDYEL--YFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQR 106 (136)
Q Consensus 31 ~~l~~g~~~~~~~~~~l~~~gi~~Vi~l~~~~~~--~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~ 106 (136)
+.+++|.-....-.+.+++.|.+.++-++.+.-. ......+.++..++++..+...+....+..+.+.++++.+.+
T Consensus 2 ~~i~~G~g~l~~l~~~~~~~~~~~~livtd~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~~~~pt~~~v~~~~~~~~~ 79 (348)
T cd08175 2 DEIVIGEGALERLPEILKEFGYKKALIVADENTYAAAGKKVEALLKRAGVVVLLIVLPAGDLIADEKAVGRVLKELER 79 (348)
T ss_pred cEEEECCCHHHHHHHHHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHCCCeeEEeecCCCcccCCHHHHHHHHHHhhc
Confidence 3456665433333345666777766655544221 111112345567887765554443334777788887777654
No 208
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=37.54 E-value=1.5e+02 Score=22.45 Aligned_cols=86 Identities=12% Similarity=0.234 Sum_probs=49.1
Q ss_pred CcEEEeCCCCcccHHHHHhcCCCEEEEcccCcccc---cccChhhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHH
Q psy7473 31 ENIILGALPFKRLTNKLLEENVKGVVSMNEDYELY---FANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRI 107 (136)
Q Consensus 31 ~~l~~g~~~~~~~~~~l~~~gi~~Vi~l~~~~~~~---~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~ 107 (136)
..++.|.-....-.+.+++.|.+.++-++.+.-.. .....+..+..++++..+ .+....+..+.++++++..++.
T Consensus 8 ~~i~fG~g~l~~l~~~l~~~g~~r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~~~--~~v~~~p~~~~v~~~~~~~~~~ 85 (379)
T TIGR02638 8 ETSYFGAGAIEDIVDEVKRRGFKKALVVTDKDLIKFGVADKVTDLLDEAGIAYELF--DEVKPNPTITVVKAGVAAFKAS 85 (379)
T ss_pred CeEEECcCHHHHHHHHHHhcCCCEEEEEcCcchhhccchHHHHHHHHHCCCeEEEE--CCCCCCcCHHHHHHHHHHHHhc
Confidence 45778855444444567778988888777653211 111233445678887654 3443456677777777766553
Q ss_pred HHcCCeEEEEcCCC
Q psy7473 108 SKTGGTVYVHCKAG 121 (136)
Q Consensus 108 ~~~~~~VlVHC~~G 121 (136)
+--++|=.-+|
T Consensus 86 ---~~D~IiaiGGG 96 (379)
T TIGR02638 86 ---GADYLIAIGGG 96 (379)
T ss_pred ---CCCEEEEeCCh
Confidence 33455544433
No 209
>COG3268 Uncharacterized conserved protein [Function unknown]
Probab=37.54 E-value=1.2e+02 Score=23.13 Aligned_cols=66 Identities=14% Similarity=0.164 Sum_probs=42.0
Q ss_pred cCCCEEEEcccCcccccccChhhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCCCCC
Q psy7473 50 ENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRT 123 (136)
Q Consensus 50 ~gi~~Vi~l~~~~~~~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~ 123 (136)
.+.+.|+|+..+...+-...-..+...|..|..+ ......|+.+++.-++..++.+.++|||- |.+
T Consensus 70 ~~~~VVlncvGPyt~~g~plv~aC~~~GTdY~Di-------TGEi~~fe~~i~~yh~~A~~~Ga~Ii~~c-GFD 135 (382)
T COG3268 70 SRTQVVLNCVGPYTRYGEPLVAACAAAGTDYADI-------TGEIMFFENSIDLYHAQAADAGARIIPGC-GFD 135 (382)
T ss_pred hcceEEEeccccccccccHHHHHHHHhCCCeeec-------cccHHHHHHHHHHHHHHHHhcCCEEeccC-CCC
Confidence 6788999998875432112234456678777532 23345677777776666666788888885 443
No 210
>PRK15378 inositol phosphate phosphatase SopB; Provisional
Probab=36.80 E-value=14 Score=29.30 Aligned_cols=20 Identities=20% Similarity=0.446 Sum_probs=15.6
Q ss_pred CCeEEEEcCCCCChHHHHHH
Q psy7473 111 GGTVYVHCKAGRTRSATLVG 130 (136)
Q Consensus 111 ~~~VlVHC~~G~~RS~~v~~ 130 (136)
|.--...|++|++|||++=+
T Consensus 456 gavP~wNCkSGKDRTGmmD~ 475 (564)
T PRK15378 456 DAVPAWNCKSGKDRTGMMDS 475 (564)
T ss_pred cceeeeccCCCCccccchHH
Confidence 33447889999999998754
No 211
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=36.73 E-value=1.2e+02 Score=19.90 Aligned_cols=48 Identities=17% Similarity=0.113 Sum_probs=21.9
Q ss_pred hhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHHHHcC--CeEEEEcCCCCChH
Q psy7473 74 NKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTG--GTVYVHCKAGRTRS 125 (136)
Q Consensus 74 ~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~~--~~VlVHC~~G~~RS 125 (136)
+..|.++..+...+.... .+..+...+.+...++ ..-.+-|..|+|=|
T Consensus 22 ~~~g~eV~D~G~~~~~~~----dYpd~a~~va~~V~~~~~~~GIliCGtGiG~s 71 (143)
T TIGR01120 22 VERGVKVIDKGTWSSERT----DYPHYAKQVALAVAGGEVDGGILICGTGIGMS 71 (143)
T ss_pred HHCCCEEEEeCCCCCCCC----CHHHHHHHHHHHHHCCCCceEEEEcCCcHHHH
Confidence 445666655554332211 2233333333333222 24444499998744
No 212
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=36.40 E-value=1.9e+02 Score=21.92 Aligned_cols=89 Identities=18% Similarity=0.076 Sum_probs=47.2
Q ss_pred EEEeCCCCcccHHHHHhcCCCEEEEcccCccc--ccccChhhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHHHHc
Q psy7473 33 IILGALPFKRLTNKLLEENVKGVVSMNEDYEL--YFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKT 110 (136)
Q Consensus 33 l~~g~~~~~~~~~~l~~~gi~~Vi~l~~~~~~--~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~ 110 (136)
+++|.-....-.+.+++.|.+.++-++.+.-. ......+..+..|+++..+-+.+....+..+.++++++.+.+..-.
T Consensus 4 v~~G~g~l~~l~~~l~~~g~~rvlvVtd~~v~~~~~~~l~~~L~~~g~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~d 83 (355)
T cd08197 4 YYLGENILDSVLGYLPELNADKYLLVTDSNVEDLYGHRLLEYLREAGAPVELLSVPSGEEHKTLSTLSDLVERALALGAT 83 (355)
T ss_pred EEEcCChHHHHHHHHHhcCCCeEEEEECccHHHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 44553333333345666777777766654321 1111123445567766555566655566777888877776554322
Q ss_pred CCeEEEEcCCC
Q psy7473 111 GGTVYVHCKAG 121 (136)
Q Consensus 111 ~~~VlVHC~~G 121 (136)
...++|=.-+|
T Consensus 84 r~~~IIAvGGG 94 (355)
T cd08197 84 RRSVIVALGGG 94 (355)
T ss_pred CCcEEEEECCc
Confidence 22366655555
No 213
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=36.03 E-value=55 Score=24.14 Aligned_cols=32 Identities=9% Similarity=-0.029 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHcCCeEEEEcCC--CCChHHHH
Q psy7473 97 LERGVDFIQRISKTGGTVYVHCKA--GRTRSATL 128 (136)
Q Consensus 97 ~~~~~~~i~~~~~~~~~VlVHC~~--G~~RS~~v 128 (136)
+.++.+.++.+...|-++.+||.. |+++++++
T Consensus 243 i~~~~~i~~~a~~~gi~~~~~~~~es~i~~aa~~ 276 (307)
T TIGR01927 243 PAKLRDLAQKAHRLGLQAVFSSVFESSIALGQLA 276 (307)
T ss_pred HHHHHHHHHHHHHcCCCEEEECccchHHHHHHHH
Confidence 455566666667788999999964 45555443
No 214
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=35.85 E-value=2.2e+02 Score=22.49 Aligned_cols=79 Identities=16% Similarity=0.139 Sum_probs=43.3
Q ss_pred HHHhcCCCEEEEcccCccc-----ccccChhhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCC
Q psy7473 46 KLLEENVKGVVSMNEDYEL-----YFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKA 120 (136)
Q Consensus 46 ~l~~~gi~~Vi~l~~~~~~-----~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~ 120 (136)
..++.|....++++..... .+..........|... +-+.|...--.+....+.++.+++.. +-++-+||+.
T Consensus 131 ~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~--I~i~Dt~G~l~P~~v~~lv~alk~~~--~~pi~~H~Hn 206 (448)
T PRK12331 131 ATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADS--ICIKDMAGILTPYVAYELVKRIKEAV--TVPLEVHTHA 206 (448)
T ss_pred HHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCE--EEEcCCCCCCCHHHHHHHHHHHHHhc--CCeEEEEecC
Confidence 3555776655544433211 0111122334456654 45667665666777788887777655 3688888865
Q ss_pred --CCChHHHH
Q psy7473 121 --GRTRSATL 128 (136)
Q Consensus 121 --G~~RS~~v 128 (136)
|.+=+.++
T Consensus 207 t~GlA~AN~l 216 (448)
T PRK12331 207 TSGIAEMTYL 216 (448)
T ss_pred CCCcHHHHHH
Confidence 54433333
No 215
>cd04864 LigD_Pol_like_1 LigD_Pol_like_1: Polymerase (Pol) domain of mostly bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 1. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=35.72 E-value=62 Score=23.06 Aligned_cols=48 Identities=17% Similarity=0.131 Sum_probs=27.1
Q ss_pred EEEeeCCCCCCCchHHHHHHHHHHHHHH---------------HHcCCeEEEEcC-CCCChHHHHHHHH
Q psy7473 80 FLQLSTRDIFDTPDQDKLERGVDFIQRI---------------SKTGGTVYVHCK-AGRTRSATLVGCY 132 (136)
Q Consensus 80 ~~~~p~~D~~~~~~~~~~~~~~~~i~~~---------------~~~~~~VlVHC~-~G~~RS~~v~~ay 132 (136)
++.+|+.... ..+....+.+.|.+. .+++++|+|=+. .|.|+ |+++.|
T Consensus 146 Hv~vPl~~~~---~~~~~r~fa~~lA~~l~~~~P~~~t~~~~k~~R~grvfiDylqN~~g~--T~vapY 209 (228)
T cd04864 146 HVVVPLDGRG---DFDDVRAFAAEAADALAKRDPDLLTTEARKAKRGDRVFLDIGRNAYGQ--TAVAPY 209 (228)
T ss_pred EEEEEcCCCC---CHHHHHHHHHHHHHHHHHHCchhhhHHhhHHhCCCcEEEECccCCCCC--eEEecc
Confidence 3557887633 233444444444442 246889999996 45444 455555
No 216
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=35.71 E-value=2.1e+02 Score=22.27 Aligned_cols=79 Identities=10% Similarity=0.196 Sum_probs=45.9
Q ss_pred HhcCCCEEEEcccCcccccccChhhhhhcCCeEEEeeCCCCCCCchHHH------------HHHHHHHHHHHHHcC-CeE
Q psy7473 48 LEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDK------------LERGVDFIQRISKTG-GTV 114 (136)
Q Consensus 48 ~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~------------~~~~~~~i~~~~~~~-~~V 114 (136)
.++|..+|-+|++.... .+....-++-..+|+-- .|..+. .+.+.+.+.++.++| .-+
T Consensus 88 ~~~GADtvMDLStGgdl------~eiR~~ii~~s~vPvGT---VPIYqA~~~~~~~~~~~t~d~~~~~v~~qa~~GVdfm 158 (432)
T COG0422 88 IKWGADTVMDLSTGGDL------HEIREWIIRNSPVPVGT---VPIYQALEEVNGKVEDLTEDDFFDTVEKQAEQGVDFM 158 (432)
T ss_pred HHhCcceeEecccCCCH------HHHHHHHHhcCCCCcCC---chHHHHHHHHhcchhhCCHHHHHHHHHHHHHhCCcEE
Confidence 34999999999987652 22222222222233321 222222 244556666666665 356
Q ss_pred EEEcC----------------CCCChHHHHHHHHhhc
Q psy7473 115 YVHCK----------------AGRTRSATLVGCYLMK 135 (136)
Q Consensus 115 lVHC~----------------~G~~RS~~v~~ayLm~ 135 (136)
-|||. .=+||-|++.++|++.
T Consensus 159 TIHaGV~~~~~~~~~~~~R~~giVSRGGsi~a~Wml~ 195 (432)
T COG0422 159 TIHAGVLLEYVPRTKRSGRVTGIVSRGGSIMAAWMLH 195 (432)
T ss_pred EeehhhhHHHHHHHHhcCceeeeeccchHHHHHHHHH
Confidence 78882 1168999999999875
No 217
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=35.58 E-value=61 Score=23.88 Aligned_cols=37 Identities=19% Similarity=0.354 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHcCCeEEEEcCCCCC----hHHHHHHHH
Q psy7473 96 KLERGVDFIQRISKTGGTVYVHCKAGRT----RSATLVGCY 132 (136)
Q Consensus 96 ~~~~~~~~i~~~~~~~~~VlVHC~~G~~----RS~~v~~ay 132 (136)
..+.+.+.+.+.+++||+++.|+-.+.. +.+..+..|
T Consensus 154 ~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~y 194 (283)
T COG2230 154 NYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKY 194 (283)
T ss_pred cHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHh
Confidence 3567777788888999999999988776 555554444
No 218
>COG0696 GpmI Phosphoglyceromutase [Carbohydrate transport and metabolism]
Probab=35.20 E-value=80 Score=25.23 Aligned_cols=56 Identities=20% Similarity=0.243 Sum_probs=32.6
Q ss_pred cCCeEEEeeCCCCCCCchHHHHHHHHHHHHHHHHcC-CeEEEEcC-CCCChHHHHHHHHh
Q psy7473 76 VGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTG-GTVYVHCK-AGRTRSATLVGCYL 133 (136)
Q Consensus 76 ~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~~-~~VlVHC~-~G~~RS~~v~~ayL 133 (136)
.+-..+-+.+.+.+ ..-.+.+.+...++.+.++| ++|++||. .|+.-.+.-+..||
T Consensus 107 ~~~~lHlmGl~S~G--GVHSh~~Hl~ali~~a~k~g~~kV~~H~f~DGRD~~P~s~~~~l 164 (509)
T COG0696 107 NGSALHLMGLVSDG--GVHSHIDHLLALIELAAKNGMKKVYLHAFLDGRDTAPRSALQYL 164 (509)
T ss_pred cCceEEEEecccCC--cccchHHHHHHHHHHHHhcCCcEEEEEEecCCCCCCchhHHHHH
Confidence 34445555554433 22244566666676777776 69999994 57665554444443
No 219
>PRK05105 O-succinylbenzoate synthase; Provisional
Probab=35.12 E-value=57 Score=24.21 Aligned_cols=35 Identities=11% Similarity=0.088 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHcCCeEEEEcC--CCCChHHHHHHH
Q psy7473 97 LERGVDFIQRISKTGGTVYVHCK--AGRTRSATLVGC 131 (136)
Q Consensus 97 ~~~~~~~i~~~~~~~~~VlVHC~--~G~~RS~~v~~a 131 (136)
+.++.+..+.+...|-++.+||. .|+++++++-.+
T Consensus 244 i~~a~~i~~~A~~~gi~~~~~~~~es~i~~aa~~hla 280 (322)
T PRK05105 244 LEKCQELIEQAHALGLRAVISSSIESSLGLTQLARLA 280 (322)
T ss_pred HHHHHHHHHHHHHcCCcEEEECchhHHHHHHHHHHHH
Confidence 56667777777788899999985 455565554433
No 220
>PHA03338 US22 family homolog; Provisional
Probab=34.85 E-value=33 Score=25.41 Aligned_cols=20 Identities=30% Similarity=0.612 Sum_probs=15.5
Q ss_pred EEEcCCCCChHHHHHHHHhh
Q psy7473 115 YVHCKAGRTRSATLVGCYLM 134 (136)
Q Consensus 115 lVHC~~G~~RS~~v~~ayLm 134 (136)
-+||.+|++=||.+.--|.|
T Consensus 160 pihC~agl~esgill~R~w~ 179 (344)
T PHA03338 160 PIHCRAGLGEIGILLGRLWL 179 (344)
T ss_pred EeccccccchhHHHHHHHHH
Confidence 35999999999887765543
No 221
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=34.72 E-value=1.4e+02 Score=22.02 Aligned_cols=72 Identities=14% Similarity=0.233 Sum_probs=34.5
Q ss_pred HHhcCCCEEEEcccCcccccc-------cChhhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHH----HHHHH-HcCCeE
Q psy7473 47 LLEENVKGVVSMNEDYELYFA-------NGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDF----IQRIS-KTGGTV 114 (136)
Q Consensus 47 l~~~gi~~Vi~l~~~~~~~~~-------~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~----i~~~~-~~~~~V 114 (136)
.+++|-++.|...-+....+. .-.+.++..|++|+....+|-.... ....+-+| +-+++ +.|+.+
T Consensus 126 Ak~mGAktFVh~sfprhms~~~l~~Rr~~M~~~C~~lGi~fv~~taPDP~sd~---gv~gaqqfIlE~vp~~i~kYGkdt 202 (275)
T PF12683_consen 126 AKKMGAKTFVHYSFPRHMSYELLARRRDIMEEACKDLGIKFVEVTAPDPTSDV---GVAGAQQFILEDVPKWIKKYGKDT 202 (275)
T ss_dssp HHHTT-S-EEEEEETTGGGSHHHHHHHHHHHHHHHHCT--EEEEEE---SSTC---HHHHHHHHHHHHHHHHHHHH-S--
T ss_pred HHHcCCceEEEEechhhcchHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCC---CcHHHHHHHHHHHHHHHHHhCCce
Confidence 566899999988654432111 1135567899999999777643222 22222233 33333 568889
Q ss_pred EEEcCCC
Q psy7473 115 YVHCKAG 121 (136)
Q Consensus 115 lVHC~~G 121 (136)
.+.|...
T Consensus 203 aff~TN~ 209 (275)
T PF12683_consen 203 AFFCTND 209 (275)
T ss_dssp EEEESSH
T ss_pred eEEecCc
Confidence 9999754
No 222
>PF08353 DUF1727: Domain of unknown function (DUF1727); InterPro: IPR013564 This domain of unknown function is found at the C terminus of bacterial proteins which include UDP-N-acetylmuramyl tripeptide synthase and the related Mur ligase.
Probab=33.85 E-value=60 Score=20.31 Aligned_cols=65 Identities=20% Similarity=0.264 Sum_probs=34.2
Q ss_pred ccHHHHHhcCCCEEEEcccCcccccccChhhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEc
Q psy7473 42 RLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHC 118 (136)
Q Consensus 42 ~~~~~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC 118 (136)
-+++.|.+.+|+.|+.-....+ . ....+.|--+|.... ...+.++++++........+++++|-+
T Consensus 44 vdFE~L~~~~i~~viv~G~Ra~--------D-malRLkyAGv~~~~i---~v~~d~~~a~~~~~~~~~~~~~~yil~ 108 (113)
T PF08353_consen 44 VDFEKLADPNIKQVIVSGTRAE--------D-MALRLKYAGVDEEKI---IVEEDLEEALDAFLIKSDPTDKVYILA 108 (113)
T ss_pred cCHHHHhcCCCCEEEEEeeeHH--------H-HHhHeeecCcchHHe---EecCCHHHHHHHHHHhcCCCCcEEEEE
Confidence 4678898888999997554432 1 122333433332211 112345555555333445566777755
No 223
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=33.70 E-value=84 Score=26.01 Aligned_cols=43 Identities=14% Similarity=0.318 Sum_probs=23.1
Q ss_pred hhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHHHH--cCCeEEEEcCCC
Q psy7473 71 EEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISK--TGGTVYVHCKAG 121 (136)
Q Consensus 71 ~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~--~~~~VlVHC~~G 121 (136)
..++.-|+.|+- |++.++ ++++.+.++++.. .++|++|||..=
T Consensus 277 ~~fe~fG~~~~g-~vDGHd-------~~~l~~al~~~k~~~~~~P~vI~~~T~ 321 (641)
T PLN02234 277 TLFEELGFHYVG-PVDGHN-------IDDLVSILETLKSTKTIGPVLIHVVTE 321 (641)
T ss_pred HHHHHcCCEEEe-eECCCC-------HHHHHHHHHHHHhcCCCCCEEEEEEEe
Confidence 456666776641 453322 3333444444332 258999999653
No 224
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=33.66 E-value=1.3e+02 Score=20.39 Aligned_cols=13 Identities=15% Similarity=0.133 Sum_probs=8.5
Q ss_pred eEEEEcCCCCChH
Q psy7473 113 TVYVHCKAGRTRS 125 (136)
Q Consensus 113 ~VlVHC~~G~~RS 125 (136)
.-++-|..|+|=|
T Consensus 60 ~GIliCGTGiG~s 72 (171)
T TIGR01119 60 LGVCICGTGVGIN 72 (171)
T ss_pred EEEEEcCCcHHHH
Confidence 4444499998744
No 225
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=33.63 E-value=93 Score=25.38 Aligned_cols=31 Identities=13% Similarity=0.200 Sum_probs=25.8
Q ss_pred CCchHHHHHHHHHHHHHHHHcCCeEEEEcCC
Q psy7473 90 DTPDQDKLERGVDFIQRISKTGGTVYVHCKA 120 (136)
Q Consensus 90 ~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~ 120 (136)
++.....++++++.|.++++++++|+|+-..
T Consensus 48 ~P~~l~~m~~a~~ri~~ai~~~e~I~I~gDy 78 (575)
T PRK11070 48 PWQQLSGIEKAVELLYNALREGTRIIVVGDF 78 (575)
T ss_pred ChHHhhCHHHHHHHHHHHHHCCCEEEEEEec
Confidence 3555678999999999999999999998754
No 226
>cd04865 LigD_Pol_like_2 LigD_Pol_like_2: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 2. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=33.57 E-value=1.6e+02 Score=20.98 Aligned_cols=51 Identities=22% Similarity=0.432 Sum_probs=27.5
Q ss_pred cCCeEEEeeCCCCCCCchHHHHHHHHHHHHHH---------------HHcCCeEEEEcC-CCCChHHHHHHHH
Q psy7473 76 VGVEFLQLSTRDIFDTPDQDKLERGVDFIQRI---------------SKTGGTVYVHCK-AGRTRSATLVGCY 132 (136)
Q Consensus 76 ~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~---------------~~~~~~VlVHC~-~G~~RS~~v~~ay 132 (136)
.|+ ++.+|+.... ..+....+.+.|.+. .+++++|+|=.. .|.|+ |+++.|
T Consensus 143 kGl-Hv~vPl~~~~---~~~~~r~fa~~iA~~l~~~~P~~~t~~~~k~~R~grvfiDylqN~~g~--T~vapY 209 (228)
T cd04865 143 RGL-HIYVPIAPRY---TFEEVRRFAELLAREVERRLPDLATTERWKKERGGRVYLDYLQNARGK--TLAAPY 209 (228)
T ss_pred CeE-EEEEEcCCCC---CHHHHHHHHHHHHHHHHHHCchhhhhHhhHHhCCCCEEEECccCCCCC--eEEecc
Confidence 344 4557887633 233444444444432 246889999874 45444 444444
No 227
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=33.52 E-value=54 Score=20.29 Aligned_cols=69 Identities=14% Similarity=0.015 Sum_probs=30.4
Q ss_pred HHHHhcCCCEEEEcccCcccccccChhhhhhcCCeEEEeeCCCCCCC-chHHHHHHHHHHHHHHHHcCCeEEEEcCC
Q psy7473 45 NKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDT-PDQDKLERGVDFIQRISKTGGTVYVHCKA 120 (136)
Q Consensus 45 ~~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~i~~~~~p~~D~~~~-~~~~~~~~~~~~i~~~~~~~~~VlVHC~~ 120 (136)
+.|.+.|.+..+-.....+. .......++.+..+|+...... .....+..+.+++ ...+.++=+|||..
T Consensus 12 ~~L~~~G~~V~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~Dvv~~~~ 81 (160)
T PF13579_consen 12 RALAARGHEVTVVTPQPDPE-----DDEEEEDGVRVHRLPLPRRPWPLRLLRFLRRLRRLL--AARRERPDVVHAHS 81 (160)
T ss_dssp HHHHHTT-EEEEEEE---GG-----G-SEEETTEEEEEE--S-SSSGGGHCCHHHHHHHHC--HHCT---SEEEEEH
T ss_pred HHHHHCCCEEEEEecCCCCc-----ccccccCCceEEeccCCccchhhhhHHHHHHHHHHH--hhhccCCeEEEecc
Confidence 45777777655544333221 2223456889999998776411 1122233333333 11455667888876
No 228
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=33.51 E-value=68 Score=24.27 Aligned_cols=30 Identities=13% Similarity=0.398 Sum_probs=18.3
Q ss_pred chHHHHHHHHHHHHHHHHcCCeEEEEcCCCC
Q psy7473 92 PDQDKLERGVDFIQRISKTGGTVYVHCKAGR 122 (136)
Q Consensus 92 ~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~ 122 (136)
...+.++++++.+++.-++ .-+|.||..+-
T Consensus 157 a~~~ei~~av~~~r~~g~~-~i~LLhC~s~Y 186 (347)
T COG2089 157 ATIEEIEEAVAILRENGNP-DIALLHCTSAY 186 (347)
T ss_pred ccHHHHHHHHHHHHhcCCC-CeEEEEecCCC
Confidence 3445566666666543222 34999998763
No 229
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=33.46 E-value=1.3e+02 Score=19.80 Aligned_cols=48 Identities=15% Similarity=0.097 Sum_probs=22.0
Q ss_pred hhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHHHHcC--CeEEEEcCCCCChH
Q psy7473 74 NKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTG--GTVYVHCKAGRTRS 125 (136)
Q Consensus 74 ~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~~--~~VlVHC~~G~~RS 125 (136)
+..|.++..+...+.+.. .+.++...+.+....| ..-.+-|..|+|=|
T Consensus 21 ~~~g~eV~D~G~~~~~~~----dYpd~a~~va~~V~~g~~~~GIliCGtGiG~s 70 (144)
T TIGR00689 21 KQKGHEVIDCGTLYDERV----DYPDYAKLVADKVVAGEVSLGILICGTGIGMS 70 (144)
T ss_pred HHCCCEEEEcCCCCCCCC----ChHHHHHHHHHHHHcCCCceEEEEcCCcHHHH
Confidence 445555555544332111 2333333333333322 24445599998744
No 230
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=33.28 E-value=46 Score=17.65 Aligned_cols=17 Identities=24% Similarity=0.427 Sum_probs=13.2
Q ss_pred EEEeCCCCcccHHHHHh
Q psy7473 33 IILGALPFKRLTNKLLE 49 (136)
Q Consensus 33 l~~g~~~~~~~~~~l~~ 49 (136)
||+++.|.....+.|++
T Consensus 1 l~v~nlp~~~t~~~l~~ 17 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRD 17 (70)
T ss_dssp EEEESETTTSSHHHHHH
T ss_pred cEEcCCCCcCCHHHHHH
Confidence 68999998877766555
No 231
>cd07995 TPK Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=33.23 E-value=1.2e+02 Score=20.87 Aligned_cols=45 Identities=16% Similarity=0.341 Sum_probs=26.6
Q ss_pred hhhhcCCeEEEeeC-CCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCCCCChH
Q psy7473 72 EWNKVGVEFLQLST-RDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRS 125 (136)
Q Consensus 72 ~~~~~~i~~~~~p~-~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS 125 (136)
.++..++...++|- .|.. +++.+++++.+. ....|+|.+..| ||-
T Consensus 59 ~~~~~~~~~~~~p~~KD~T------D~e~Al~~~~~~--~~~~i~i~Ga~G-gR~ 104 (208)
T cd07995 59 YYKSKGVEIIHFPDEKDFT------DFEKALKLALER--GADEIVILGATG-GRL 104 (208)
T ss_pred HHHhcCCeEEECCCCCCCC------HHHHHHHHHHHc--CCCEEEEEccCC-CcH
Confidence 34456777888887 4433 455555544432 124788888777 464
No 232
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=33.18 E-value=1.4e+02 Score=19.72 Aligned_cols=12 Identities=25% Similarity=0.548 Sum_probs=8.2
Q ss_pred eEEEEcCCCCChH
Q psy7473 113 TVYVHCKAGRTRS 125 (136)
Q Consensus 113 ~VlVHC~~G~~RS 125 (136)
.|+| |..|+|=|
T Consensus 62 GIli-CGtGiG~s 73 (148)
T PRK05571 62 GILI-CGTGIGMS 73 (148)
T ss_pred EEEE-cCCcHHHH
Confidence 4555 99998744
No 233
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=33.13 E-value=74 Score=22.13 Aligned_cols=30 Identities=20% Similarity=0.060 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHcCCeEEEEcCCC--CChHH
Q psy7473 97 LERGVDFIQRISKTGGTVYVHCKAG--RTRSA 126 (136)
Q Consensus 97 ~~~~~~~i~~~~~~~~~VlVHC~~G--~~RS~ 126 (136)
+.++.+.++.+...|-++.+||..| ++++.
T Consensus 182 i~~~~~i~~~a~~~gi~~~~~~~~~s~i~~~a 213 (229)
T cd00308 182 LTESRRAADLAEAFGIRVMVHGTLESSIGTAA 213 (229)
T ss_pred HHHHHHHHHHHHHcCCEEeecCCCCCHHHHHH
Confidence 5666667777778889999999754 44443
No 234
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=33.10 E-value=85 Score=21.35 Aligned_cols=28 Identities=14% Similarity=0.354 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEEEEcCC
Q psy7473 93 DQDKLERGVDFIQRISKTGGTVYVHCKA 120 (136)
Q Consensus 93 ~~~~~~~~~~~i~~~~~~~~~VlVHC~~ 120 (136)
....++.+.+.+.++.-.+|.|+||+..
T Consensus 20 ee~~iedaARlLAQA~vgeG~IYi~G~~ 47 (172)
T PF10740_consen 20 EEESIEDAARLLAQAIVGEGTIYIYGFG 47 (172)
T ss_dssp CHHHHHHHHHHHHHHHHTT--EEEEE-G
T ss_pred hHhhHHHHHHHHHHHHhcCCEEEEEecC
Confidence 3467899999999999888999999864
No 235
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=33.00 E-value=1.3e+02 Score=21.77 Aligned_cols=79 Identities=10% Similarity=0.040 Sum_probs=47.6
Q ss_pred HHHhcCCCEEEEcccCcccccccCh---------hhhhh------cCCeEEEeeCCCCCCCchHHHHHHHHHHHHHHHHc
Q psy7473 46 KLLEENVKGVVSMNEDYELYFANGR---------EEWNK------VGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKT 110 (136)
Q Consensus 46 ~l~~~gi~~Vi~l~~~~~~~~~~~~---------~~~~~------~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~ 110 (136)
..++.|.+.|+++.+..+.+-.+.. ..... .-+-|..+-....+.+.+.++.+...++|+.....
T Consensus 116 aa~~~Gl~pIlCvGEtl~~reag~t~~v~~~Ql~~~l~~l~~~~~~vIAYEPvWAIGTG~~at~~~a~~v~~~Ir~~~~~ 195 (251)
T COG0149 116 AAKEAGLTPILCVGETLEEREAGKTLEVLKRQLAAALAALSPEANIVIAYEPVWAIGTGKSASPADAEEVHAFIRAVLAE 195 (251)
T ss_pred HHHHCCCeEEEEcCCCHHHHhccChHHHHHHHHHHHHhhcCcccCeEEEECCHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4666899999988876532000000 00111 11233322233445577888999999999998854
Q ss_pred C----CeEEEEcCCCCCh
Q psy7473 111 G----GTVYVHCKAGRTR 124 (136)
Q Consensus 111 ~----~~VlVHC~~G~~R 124 (136)
. ..|-|-|-+|++-
T Consensus 196 ~~~~~~~v~IlYGGSV~~ 213 (251)
T COG0149 196 LFGAEEKVRILYGGSVKP 213 (251)
T ss_pred hcCCCCCeEEEEeCCcCh
Confidence 3 6888989888763
No 236
>PF09345 DUF1987: Domain of unknown function (DUF1987); InterPro: IPR018530 This family of proteins are functionally uncharacterised.
Probab=32.90 E-value=95 Score=18.95 Aligned_cols=38 Identities=18% Similarity=0.252 Sum_probs=28.5
Q ss_pred EEeeCCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcC
Q psy7473 81 LQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCK 119 (136)
Q Consensus 81 ~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~ 119 (136)
+++.+.-.. ..+...+-.+.+.++++.+.|++|-|+..
T Consensus 47 ~~~~L~YfN-TSSsk~l~~i~~~Le~~~~~g~~V~v~Wy 84 (99)
T PF09345_consen 47 FNFKLSYFN-TSSSKALMDIFDLLEDAAQKGGKVTVNWY 84 (99)
T ss_pred EEEEEEEEe-cHhHHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence 344444433 66778889999999999889999998864
No 237
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=32.58 E-value=23 Score=26.05 Aligned_cols=11 Identities=18% Similarity=0.292 Sum_probs=9.0
Q ss_pred HcCCeEEEEcC
Q psy7473 109 KTGGTVYVHCK 119 (136)
Q Consensus 109 ~~~~~VlVHC~ 119 (136)
++.++|+|||-
T Consensus 225 SSP~RVlIHal 235 (287)
T PF05582_consen 225 SSPKRVLIHAL 235 (287)
T ss_pred CCccceEEecc
Confidence 35789999995
No 238
>KOG0348|consensus
Probab=32.57 E-value=70 Score=26.13 Aligned_cols=31 Identities=13% Similarity=0.296 Sum_probs=25.7
Q ss_pred cccccCcEEEeCCCCcccHHHHHhcCCCEEEE
Q psy7473 26 YDRIDENIILGALPFKRLTNKLLEENVKGVVS 57 (136)
Q Consensus 26 ~~~i~~~l~~g~~~~~~~~~~l~~~gi~~Vi~ 57 (136)
+.||.|++.+|+........+| +.||.-+|.
T Consensus 238 ~hWIVPg~lmGGEkkKSEKARL-RKGiNILIg 268 (708)
T KOG0348|consen 238 FHWIVPGVLMGGEKKKSEKARL-RKGINILIG 268 (708)
T ss_pred ceEEeeceeecccccccHHHHH-hcCceEEEc
Confidence 7899999999999877777776 459988883
No 239
>PF12091 DUF3567: Protein of unknown function (DUF3567); InterPro: IPR021951 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved EIVDK sequence motif.
Probab=32.46 E-value=71 Score=19.03 Aligned_cols=25 Identities=16% Similarity=0.301 Sum_probs=16.5
Q ss_pred CchHHHHHHHHHHHHHHHHcCCeEEEE
Q psy7473 91 TPDQDKLERGVDFIQRISKTGGTVYVH 117 (136)
Q Consensus 91 ~~~~~~~~~~~~~i~~~~~~~~~VlVH 117 (136)
+|+.+.++++++-.+...++ ||.+|
T Consensus 61 ~Pt~EevDdfL~~y~~l~~q--Pvv~H 85 (85)
T PF12091_consen 61 EPTQEEVDDFLGGYDALMQQ--PVVLH 85 (85)
T ss_pred CCCHHHHHHHHHHHHHHHhC--CeecC
Confidence 56667777666666555554 78877
No 240
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=32.39 E-value=2.3e+02 Score=21.63 Aligned_cols=77 Identities=13% Similarity=0.189 Sum_probs=46.3
Q ss_pred HHHHhcCCCEEEEcccCcccccccChhhhhhcC-CeEEEee-CCCCCCCch---------HHHHHHHHHHHHHHHHcCCe
Q psy7473 45 NKLLEENVKGVVSMNEDYELYFANGREEWNKVG-VEFLQLS-TRDIFDTPD---------QDKLERGVDFIQRISKTGGT 113 (136)
Q Consensus 45 ~~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~-i~~~~~p-~~D~~~~~~---------~~~~~~~~~~i~~~~~~~~~ 113 (136)
+.|++.||..+|-+..+... .......+.+ +..+.+| ..|.+-... .+...++++-+.+..+.-++
T Consensus 88 ~~l~~~gId~LvvIGGDgS~---~gA~~Lae~~~i~vVGvPkTIDNDi~~td~tiGfdTA~~~~~eaid~l~dtassh~r 164 (347)
T COG0205 88 ENLKKLGIDALVVIGGDGSY---TGAALLAEEGGIPVVGVPKTIDNDISGTDFTIGFDTALETAVEAIDNLRDTASSHER 164 (347)
T ss_pred HHHHHcCCCEEEEECCCChH---HHHHHHHHhcCCcEEecCCCccCCCcccccCccHHHHHHHHHHHHHHHHHHHhCcCC
Confidence 34889999999999988753 1122333344 8888888 444431211 12233334444444456678
Q ss_pred EEEEcCCCCCh
Q psy7473 114 VYVHCKAGRTR 124 (136)
Q Consensus 114 VlVHC~~G~~R 124 (136)
+.|+=-.|++-
T Consensus 165 ~~iveVMGR~a 175 (347)
T COG0205 165 IFIVEVMGRHA 175 (347)
T ss_pred EEEEEecCcCh
Confidence 99888888643
No 241
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=32.32 E-value=94 Score=23.04 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHcCCeEEEEc--CCCCChHHHHHHHHh
Q psy7473 97 LERGVDFIQRISKTGGTVYVHC--KAGRTRSATLVGCYL 133 (136)
Q Consensus 97 ~~~~~~~i~~~~~~~~~VlVHC--~~G~~RS~~v~~ayL 133 (136)
+.++.+.++.+...|-++.+|| ..|++.++++-.|.+
T Consensus 260 it~~~~~~~~A~~~gi~~~~~~~~es~i~~aa~~hla~~ 298 (324)
T TIGR01928 260 LTEVQKAIETCREHGAKVWIGGMLETGISRAFNVALASL 298 (324)
T ss_pred HHHHHHHHHHHHHcCCeEEEcceEcccHHHHHHHHHHhC
Confidence 4555666666777888999988 457777666555443
No 242
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=32.28 E-value=1.8e+02 Score=22.08 Aligned_cols=86 Identities=14% Similarity=0.255 Sum_probs=47.5
Q ss_pred CcEEEeCCCCcccHHHHHhcCCCEEEEcccCcccc---cccChhhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHH
Q psy7473 31 ENIILGALPFKRLTNKLLEENVKGVVSMNEDYELY---FANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRI 107 (136)
Q Consensus 31 ~~l~~g~~~~~~~~~~l~~~gi~~Vi~l~~~~~~~---~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~ 107 (136)
+.++.|.-....-.+.+++.|.+.++-+++..-.. .....+..+..|+++..+ .+....|..+.++++++.+++.
T Consensus 9 ~~i~~G~g~l~~l~~~~~~~g~~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~--~~v~~~p~~~~v~~~~~~~~~~ 86 (382)
T PRK10624 9 ETAYFGRGAIGALTDEVKRRGFKKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIY--DGVKPNPTIEVVKEGVEVFKAS 86 (382)
T ss_pred CeEEECcCHHHHHHHHHHhcCCCEEEEEeCcchhhCcchHHHHHHHHHCCCeEEEe--CCCCCCcCHHHHHHHHHHHHhc
Confidence 56777754444444567778888887776643211 111223455678877554 3444456667777777666553
Q ss_pred HHcCCeEEEEcCCC
Q psy7473 108 SKTGGTVYVHCKAG 121 (136)
Q Consensus 108 ~~~~~~VlVHC~~G 121 (136)
+--++|=--+|
T Consensus 87 ---~~D~IIaiGGG 97 (382)
T PRK10624 87 ---GADYLIAIGGG 97 (382)
T ss_pred ---CCCEEEEeCCh
Confidence 33455533333
No 243
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=32.15 E-value=24 Score=25.87 Aligned_cols=11 Identities=18% Similarity=0.283 Sum_probs=8.9
Q ss_pred cCCeEEEEcCC
Q psy7473 110 TGGTVYVHCKA 120 (136)
Q Consensus 110 ~~~~VlVHC~~ 120 (136)
+.++|+|||-.
T Consensus 225 SP~RVlIHalD 235 (283)
T TIGR02855 225 SPSRVNIHALD 235 (283)
T ss_pred CccceEEeccC
Confidence 56899999963
No 244
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=32.01 E-value=1.1e+02 Score=18.33 Aligned_cols=33 Identities=15% Similarity=0.235 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHcCCeEEEEcCCCCChHHHHHH
Q psy7473 97 LERGVDFIQRISKTGGTVYVHCKAGRTRSATLVG 130 (136)
Q Consensus 97 ~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ 130 (136)
++.+.++|+...+.|.++++.-..+ +||..-.+
T Consensus 16 ipga~e~l~~L~~~g~~~~~lTNns-~~s~~~~~ 48 (101)
T PF13344_consen 16 IPGAVEALDALRERGKPVVFLTNNS-SRSREEYA 48 (101)
T ss_dssp -TTHHHHHHHHHHTTSEEEEEES-S-SS-HHHHH
T ss_pred CcCHHHHHHHHHHcCCCEEEEeCCC-CCCHHHHH
Confidence 5566777878888888888876655 46644333
No 245
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=31.91 E-value=67 Score=23.84 Aligned_cols=12 Identities=25% Similarity=0.880 Sum_probs=9.7
Q ss_pred HcCCeEEEEcCC
Q psy7473 109 KTGGTVYVHCKA 120 (136)
Q Consensus 109 ~~~~~VlVHC~~ 120 (136)
..|..||.||.+
T Consensus 119 ~~g~~ILT~~~S 130 (310)
T PRK08535 119 RDGDVIMTHCNS 130 (310)
T ss_pred CCCCEEEEeCCc
Confidence 467899999965
No 246
>PRK14118 gpmA phosphoglyceromutase; Provisional
Probab=31.90 E-value=1.1e+02 Score=21.42 Aligned_cols=35 Identities=23% Similarity=0.244 Sum_probs=24.9
Q ss_pred CchHHHHHHHHHHHHHHHH----cCCeEEEEcCCCCChH
Q psy7473 91 TPDQDKLERGVDFIQRISK----TGGTVYVHCKAGRTRS 125 (136)
Q Consensus 91 ~~~~~~~~~~~~~i~~~~~----~~~~VlVHC~~G~~RS 125 (136)
+...+..+++.+++++... .+++|+|=|.+|+-|+
T Consensus 149 Es~~~~~~Rv~~~l~~~~~~~~~~~~~vlvVsHggvir~ 187 (227)
T PRK14118 149 ENLKVTLERVLPFWEDQIAPALLSGKRVLVAAHGNSLRA 187 (227)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhcCCCeEEEEeCHHHHHH
Confidence 4445566777777766442 4678999999998876
No 247
>COG0406 phoE Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
Probab=31.87 E-value=91 Score=21.10 Aligned_cols=34 Identities=21% Similarity=0.201 Sum_probs=25.1
Q ss_pred CchHHHHHHHHHHHHHHHHcCC--eEEEEcCCCCCh
Q psy7473 91 TPDQDKLERGVDFIQRISKTGG--TVYVHCKAGRTR 124 (136)
Q Consensus 91 ~~~~~~~~~~~~~i~~~~~~~~--~VlVHC~~G~~R 124 (136)
+...+...++..++++..+... +|+|=|++|.-|
T Consensus 123 Es~~~~~~R~~~~~~~~~~~~~~~~vlvVsHg~~ir 158 (208)
T COG0406 123 ESLADVSKRVVAALAELLRSPPGNNVLVVSHGGVIR 158 (208)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCeEEEEEChHHHH
Confidence 4555667788888887775433 599999999888
No 248
>cd04863 MtLigD_Pol_like MtLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Mycobacterium tuberculosis (Mt)LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. MtLigD is monomeric and contains an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The MtLigD Pol domain is stimulated by manganese, is error-prone, and prefers adding rNTPs to dNTPs in vitro. The MtLigD Pol domain has been shown to prefer DNA gapped substrates
Probab=31.83 E-value=74 Score=22.71 Aligned_cols=48 Identities=19% Similarity=0.250 Sum_probs=26.6
Q ss_pred EEEeeCCCCCCCchHHHHHHHHHHHHHH---------------HHcCCeEEEEcC-CCCChHHHHHHHH
Q psy7473 80 FLQLSTRDIFDTPDQDKLERGVDFIQRI---------------SKTGGTVYVHCK-AGRTRSATLVGCY 132 (136)
Q Consensus 80 ~~~~p~~D~~~~~~~~~~~~~~~~i~~~---------------~~~~~~VlVHC~-~G~~RS~~v~~ay 132 (136)
++.+|+.... ..+....+.+.|.+. .+++++|+|=+. .|.|+ |+++.|
T Consensus 149 HV~vPl~~~~---~~~~vr~fa~~~A~~l~~~~P~~~t~~~~k~~R~grvfiDylqN~~g~--T~vapY 212 (231)
T cd04863 149 HLYVPLDGPV---SSDQTKEFAKALARELEREHPDLVVSRMTKSLRAGKVFVDWSQNDAAK--TTIAPY 212 (231)
T ss_pred EEEEEcCCCC---CHHHHHHHHHHHHHHHHHHCchhhhhHhhHhhCCCcEEEECccCCCCC--eEEecc
Confidence 3557887633 233444444444332 146789999985 45444 455555
No 249
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=31.80 E-value=85 Score=23.12 Aligned_cols=40 Identities=10% Similarity=0.151 Sum_probs=24.3
Q ss_pred hcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcC
Q psy7473 75 KVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCK 119 (136)
Q Consensus 75 ~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~ 119 (136)
..|+..+++.= .+..+..+.+.+.++.+++.++|+||+|.
T Consensus 184 ~~gip~~~VDG-----~D~~av~~a~~~A~~~~R~g~gP~lie~~ 223 (300)
T PF00676_consen 184 GYGIPGIRVDG-----NDVEAVYEAAKEAVEYARAGKGPVLIEAV 223 (300)
T ss_dssp GTTSEEEEEET-----TSHHHHHHHHHHHHHHHHTTT--EEEEEE
T ss_pred ccCCcEEEECC-----EeHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 35666555422 34445566666667777777899999996
No 250
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=31.68 E-value=79 Score=22.02 Aligned_cols=27 Identities=19% Similarity=0.111 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHcCCeEEEEcCCCCChH
Q psy7473 97 LERGVDFIQRISKTGGTVYVHCKAGRTRS 125 (136)
Q Consensus 97 ~~~~~~~i~~~~~~~~~VlVHC~~G~~RS 125 (136)
+.++++.+....+ ++++|||.+|++..
T Consensus 79 ~~~v~~~l~~~~~--~~~vis~~~gi~~~ 105 (245)
T PRK07634 79 HEELLAELSPLLS--NQLVVTVAAGIGPS 105 (245)
T ss_pred HHHHHHHHHhhcc--CCEEEEECCCCCHH
Confidence 3444444443333 46999999999866
No 251
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=31.63 E-value=1.8e+02 Score=20.20 Aligned_cols=83 Identities=10% Similarity=0.060 Sum_probs=47.8
Q ss_pred HHHHhcCCCEEEEcccCccc---ccccChhhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCC-
Q psy7473 45 NKLLEENVKGVVSMNEDYEL---YFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKA- 120 (136)
Q Consensus 45 ~~l~~~gi~~Vi~l~~~~~~---~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~- 120 (136)
+..++.|.+..+++...... .+..........|...+ -+.|....-.+..+.+.++.+++.... .++=+||+.
T Consensus 115 ~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i--~l~Dt~G~~~P~~v~~lv~~~~~~~~~-~~l~~H~Hnd 191 (237)
T PF00682_consen 115 KYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADII--YLADTVGIMTPEDVAELVRALREALPD-IPLGFHAHND 191 (237)
T ss_dssp HHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEE--EEEETTS-S-HHHHHHHHHHHHHHSTT-SEEEEEEBBT
T ss_pred HHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEE--EeeCccCCcCHHHHHHHHHHHHHhccC-CeEEEEecCC
Confidence 34667899998887654432 11111122233566654 456665567778888999988887664 788888865
Q ss_pred -CCChHHHHHH
Q psy7473 121 -GRTRSATLVG 130 (136)
Q Consensus 121 -G~~RS~~v~~ 130 (136)
|.+-+.++++
T Consensus 192 ~Gla~An~laA 202 (237)
T PF00682_consen 192 LGLAVANALAA 202 (237)
T ss_dssp TS-HHHHHHHH
T ss_pred ccchhHHHHHH
Confidence 4444444333
No 252
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=31.62 E-value=1.4e+02 Score=20.25 Aligned_cols=13 Identities=23% Similarity=0.166 Sum_probs=8.6
Q ss_pred eEEEEcCCCCChH
Q psy7473 113 TVYVHCKAGRTRS 125 (136)
Q Consensus 113 ~VlVHC~~G~~RS 125 (136)
.-++-|..|+|=|
T Consensus 60 ~GIliCGTGiG~s 72 (171)
T PRK08622 60 LGVCICGTGVGIS 72 (171)
T ss_pred EEEEEcCCcHHHH
Confidence 4444499998744
No 253
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=31.55 E-value=1.5e+02 Score=20.56 Aligned_cols=20 Identities=10% Similarity=0.215 Sum_probs=16.9
Q ss_pred CeEEEEcCCCCChHHHHHHH
Q psy7473 112 GTVYVHCKAGRTRSATLVGC 131 (136)
Q Consensus 112 ~~VlVHC~~G~~RS~~v~~a 131 (136)
.+++||...|.|.|-.+-++
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai 54 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAI 54 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHH
Confidence 48999999999999766554
No 254
>TIGR02133 RPI_actino ribose 5-phosphate isomerase. This family is a member of the RpiB/LacA/LacB subfamily (TIGR00689) but lies outside the RpiB equivalog (TIGR01120) which is also a member of that subfamily. Ribose 5-phosphate isomerase is an essential enzyme of the pentose phosphate pathway; a pathway that appears to be present in the actinobacteria. The only candidates for ribose 5-phosphate isomerase in the Actinobacteria are members of this family.
Probab=31.42 E-value=1.5e+02 Score=19.51 Aligned_cols=12 Identities=8% Similarity=0.260 Sum_probs=8.2
Q ss_pred eEEEEcCCCCChH
Q psy7473 113 TVYVHCKAGRTRS 125 (136)
Q Consensus 113 ~VlVHC~~G~~RS 125 (136)
.|+| |..|+|=|
T Consensus 62 GIli-CGtGiG~s 73 (148)
T TIGR02133 62 GIVI-GGSGNGEA 73 (148)
T ss_pred EEEE-cCCChhhe
Confidence 4554 99998744
No 255
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=31.38 E-value=2.4e+02 Score=21.64 Aligned_cols=31 Identities=13% Similarity=0.065 Sum_probs=21.9
Q ss_pred EEEeCCCCcccHHHHHhcCCCEEEEcccCccc
Q psy7473 33 IILGALPFKRLTNKLLEENVKGVVSMNEDYEL 64 (136)
Q Consensus 33 l~~g~~~~~~~~~~l~~~gi~~Vi~l~~~~~~ 64 (136)
+|-|......+.+...+.||..+ ++-+..|.
T Consensus 84 if~gp~K~~~~l~~a~~~Gv~~i-~vDS~~El 114 (394)
T cd06831 84 IYTNPCKQASQIKYAAKVGVNIM-TCDNEIEL 114 (394)
T ss_pred EEeCCCCCHHHHHHHHHCCCCEE-EECCHHHH
Confidence 67777777778888888999654 55555543
No 256
>KOG1549|consensus
Probab=31.32 E-value=67 Score=25.14 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=29.1
Q ss_pred EEEEcccCcccccccChhhhhhcCCeEEEeeCCCCCCCchHHHHHH
Q psy7473 54 GVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLER 99 (136)
Q Consensus 54 ~Vi~l~~~~~~~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~ 99 (136)
+||.+..+.+. ........+..|++...+|+.+.+ ..+.+.+++
T Consensus 133 ~iitl~~eH~~-v~~s~~~l~~~g~~Vt~lpv~~~~-~~d~~~~~~ 176 (428)
T KOG1549|consen 133 HIITLQTEHPC-VLDSCRALQEEGLEVTYLPVEDSG-LVDISKLRE 176 (428)
T ss_pred eEEEecccCcc-hhHHHHHHHhcCeEEEEeccCccc-cccHHHHHH
Confidence 99998887653 111234566788999999999765 444444443
No 257
>KOG4388|consensus
Probab=31.25 E-value=59 Score=26.87 Aligned_cols=11 Identities=36% Similarity=0.927 Sum_probs=9.5
Q ss_pred CCeEEEEcCCC
Q psy7473 111 GGTVYVHCKAG 121 (136)
Q Consensus 111 ~~~VlVHC~~G 121 (136)
...+++||.+|
T Consensus 395 S~sli~HcHGG 405 (880)
T KOG4388|consen 395 SRSLIVHCHGG 405 (880)
T ss_pred CceEEEEecCC
Confidence 56799999988
No 258
>PF09623 Cas_NE0113: CRISPR-associated protein NE0113 (Cas_NE0113); InterPro: IPR019092 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a Cas protein family found in both bacteria and arachaea. The function of these proteins is unknown.
Probab=31.19 E-value=1.3e+02 Score=21.39 Aligned_cols=37 Identities=14% Similarity=0.185 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHcCCeEEEEcCCCCChHHHHHHHHh
Q psy7473 97 LERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYL 133 (136)
Q Consensus 97 ~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL 133 (136)
.+.+.+.|.+..+..+..+.-|-+|=-++-++.++|-
T Consensus 97 ~~~I~~~i~~l~~~~~~~lh~sIAGGRKtMs~~~~~a 133 (224)
T PF09623_consen 97 ADFIYRLIRELKQDPGRRLHVSIAGGRKTMSFYAGYA 133 (224)
T ss_pred HHHHHHHHHHHhhCCCCeEEEEecCChHHHHHHHHHH
Confidence 3444444554444534444446677335655655553
No 259
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=30.92 E-value=69 Score=21.08 Aligned_cols=38 Identities=16% Similarity=0.181 Sum_probs=19.8
Q ss_pred HHHHhcCCCEEEEcccCcccccccChhhhhhcCCeEEEee
Q psy7473 45 NKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLS 84 (136)
Q Consensus 45 ~~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~i~~~~~p 84 (136)
+.|++.|...|+-+....-. +.+.+.+++.|+.-+.-|
T Consensus 85 e~lre~G~~~i~v~~GGvip--~~d~~~l~~~G~~~if~p 122 (143)
T COG2185 85 EALREAGVEDILVVVGGVIP--PGDYQELKEMGVDRIFGP 122 (143)
T ss_pred HHHHHhCCcceEEeecCccC--chhHHHHHHhCcceeeCC
Confidence 45777888888843332210 222344566676544333
No 260
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=30.85 E-value=59 Score=24.94 Aligned_cols=19 Identities=37% Similarity=0.571 Sum_probs=14.5
Q ss_pred HcCCeEEEEcCCCCChHHHH
Q psy7473 109 KTGGTVYVHCKAGRTRSATL 128 (136)
Q Consensus 109 ~~~~~VlVHC~~G~~RS~~v 128 (136)
..+++|+++|..| .||...
T Consensus 341 ~~d~~iVvyC~~G-~rS~~a 359 (392)
T PRK07878 341 PQDRTIVLYCKTG-VRSAEA 359 (392)
T ss_pred CCCCcEEEEcCCC-hHHHHH
Confidence 4678999999998 477443
No 261
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=30.57 E-value=33 Score=23.60 Aligned_cols=42 Identities=17% Similarity=0.336 Sum_probs=26.9
Q ss_pred CchHHHHHHHHHHHHHHHHcCCeEEEEcCCCCChHHHHHHHHhh
Q psy7473 91 TPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLM 134 (136)
Q Consensus 91 ~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm 134 (136)
......++++++.+.+..++.+| +..--|.|.-+++++.+++
T Consensus 80 ~~~~~~~~~sl~~l~~~i~~~GP--fdGvlGFSQGA~lAa~ll~ 121 (212)
T PF03959_consen 80 DHEYEGLDESLDYLRDYIEENGP--FDGVLGFSQGAALAALLLA 121 (212)
T ss_dssp SGGG---HHHHHHHHHHHHHH-----SEEEEETHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHhcCC--eEEEEeecHHHHHHHHHHH
Confidence 34556788888888888877777 4455688888888887764
No 262
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=30.48 E-value=1.5e+02 Score=20.15 Aligned_cols=13 Identities=15% Similarity=0.133 Sum_probs=8.6
Q ss_pred eEEEEcCCCCChH
Q psy7473 113 TVYVHCKAGRTRS 125 (136)
Q Consensus 113 ~VlVHC~~G~~RS 125 (136)
.-++-|..|+|=|
T Consensus 60 ~GIliCGTGiG~s 72 (171)
T PRK12615 60 LGVCICGTGVGIN 72 (171)
T ss_pred EEEEEcCCcHHHH
Confidence 4445599998744
No 263
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=30.44 E-value=51 Score=15.93 Aligned_cols=21 Identities=19% Similarity=0.537 Sum_probs=13.6
Q ss_pred chHHHHHHHHHHHHHHHHcCC
Q psy7473 92 PDQDKLERGVDFIQRISKTGG 112 (136)
Q Consensus 92 ~~~~~~~~~~~~i~~~~~~~~ 112 (136)
|+.+.|++..++|++....|.
T Consensus 5 Pt~eEF~dp~~yi~~i~~~g~ 25 (34)
T PF02375_consen 5 PTMEEFKDPIKYISSIEPEGE 25 (34)
T ss_dssp --HHHHS-HHHHHHHHHHTTG
T ss_pred CCHHHHhCHHHHHHHHHHHHH
Confidence 567788888888888766543
No 264
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=30.29 E-value=2e+02 Score=22.09 Aligned_cols=86 Identities=10% Similarity=0.071 Sum_probs=49.2
Q ss_pred CcEEEeCCCCcccHHHHHhcCCCEEEEcccCccc---ccccChhhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHH
Q psy7473 31 ENIILGALPFKRLTNKLLEENVKGVVSMNEDYEL---YFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRI 107 (136)
Q Consensus 31 ~~l~~g~~~~~~~~~~l~~~gi~~Vi~l~~~~~~---~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~ 107 (136)
..++.|.-...+--+.+++.|.+.++-++...-. .+....+..+..|+++..+. +...+|..+.++++++..++.
T Consensus 28 ~~i~fG~g~~~~l~~~~~~~g~~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~--~v~~~P~~~~v~~~~~~~r~~ 105 (395)
T PRK15454 28 PVTLCGPGAVSSCGQQAQTRGLKHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWP--CPVGEPCITDVCAAVAQLRES 105 (395)
T ss_pred CeEEECcCHHHHHHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEEC--CCCCCcCHHHHHHHHHHHHhc
Confidence 4567775433333456777898888877654311 11112344566788876552 333356677788777766553
Q ss_pred HHcCCeEEEEcCCC
Q psy7473 108 SKTGGTVYVHCKAG 121 (136)
Q Consensus 108 ~~~~~~VlVHC~~G 121 (136)
+--++|=.-+|
T Consensus 106 ---~~D~IiavGGG 116 (395)
T PRK15454 106 ---GCDGVIAFGGG 116 (395)
T ss_pred ---CcCEEEEeCCh
Confidence 44466655444
No 265
>PF08974 DUF1877: Domain of unknown function (DUF1877); InterPro: IPR015068 This entry represents a family of hypothetical proteins.; PDB: 1RYL_B.
Probab=30.28 E-value=1.1e+02 Score=20.28 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEE
Q psy7473 94 QDKLERGVDFIQRISKTGGTVYVH 117 (136)
Q Consensus 94 ~~~~~~~~~~i~~~~~~~~~VlVH 117 (136)
...|+++.+|.+++.++|..|++.
T Consensus 143 ~~~f~~L~~Fy~~AA~~~~~Vl~~ 166 (167)
T PF08974_consen 143 WDYFEELKEFYQKAAENGDAVLFY 166 (167)
T ss_dssp HHHHHHHHHHHHHHHHCT-EEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEe
Confidence 467899999999999999999874
No 266
>PTZ00138 small nuclear ribonucleoprotein; Provisional
Probab=30.14 E-value=69 Score=19.21 Aligned_cols=22 Identities=14% Similarity=-0.067 Sum_probs=15.5
Q ss_pred HHHHHHHcCCeEEEEcCCCCCh
Q psy7473 103 FIQRISKTGGTVYVHCKAGRTR 124 (136)
Q Consensus 103 ~i~~~~~~~~~VlVHC~~G~~R 124 (136)
.+-...+...+|.|||..|.+|
T Consensus 18 ~~~~~~~~~~~V~i~l~~~~~r 39 (89)
T PTZ00138 18 QIFRFFTEKTRVQIWLYDHPNL 39 (89)
T ss_pred HHHHHhcCCcEEEEEEEeCCCc
Confidence 3444555668999999887665
No 267
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=29.98 E-value=79 Score=23.38 Aligned_cols=13 Identities=31% Similarity=0.774 Sum_probs=10.1
Q ss_pred HHcCCeEEEEcCC
Q psy7473 108 SKTGGTVYVHCKA 120 (136)
Q Consensus 108 ~~~~~~VlVHC~~ 120 (136)
+..|..||.||.+
T Consensus 113 i~~g~~ILT~~~S 125 (301)
T TIGR00511 113 IRDGDVVMTHCNS 125 (301)
T ss_pred cCCCCEEEEECCc
Confidence 3467899999965
No 268
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=29.97 E-value=39 Score=24.45 Aligned_cols=16 Identities=25% Similarity=0.333 Sum_probs=12.4
Q ss_pred CCCCChHHHHHHHHhh
Q psy7473 119 KAGRTRSATLVGCYLM 134 (136)
Q Consensus 119 ~~G~~RS~~v~~ayLm 134 (136)
--|+||||+-+++-++
T Consensus 159 ~PGiSRSG~Ti~~~l~ 174 (259)
T PF02673_consen 159 IPGISRSGATITAGLL 174 (259)
T ss_pred CCCcChHHHHHHHHHH
Confidence 3499999988877664
No 269
>COG2243 CobF Precorrin-2 methylase [Coenzyme metabolism]
Probab=29.95 E-value=1.4e+02 Score=21.42 Aligned_cols=44 Identities=11% Similarity=0.021 Sum_probs=32.9
Q ss_pred cCCeEEEeeCCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcC
Q psy7473 76 VGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCK 119 (136)
Q Consensus 76 ~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~ 119 (136)
....-+++|+.....+...+..+++++.|...++.|+.|-+-|-
T Consensus 55 ~~~~~l~fPm~~~~~e~~~~~~~e~a~~va~~l~~G~~VAf~~l 98 (234)
T COG2243 55 SRIVELHFPMTTDMREELEDAWEEAAAEVAAELEAGRDVAFLTL 98 (234)
T ss_pred ceeeEEEeccCCchHHHHHHHHHHHHHHHHHHHHcCCeEEEEEc
Confidence 33556788988762255667788899999999999888887664
No 270
>KOG0397|consensus
Probab=29.87 E-value=1.2e+02 Score=19.91 Aligned_cols=12 Identities=17% Similarity=0.354 Sum_probs=9.7
Q ss_pred HcCCeEEEEcCC
Q psy7473 109 KTGGTVYVHCKA 120 (136)
Q Consensus 109 ~~~~~VlVHC~~ 120 (136)
+.++++.|||..
T Consensus 61 rRNEKIAvh~tV 72 (176)
T KOG0397|consen 61 RRNEKIAVHVTV 72 (176)
T ss_pred ccCceEEEEEEe
Confidence 567899999963
No 271
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=29.84 E-value=1.2e+02 Score=24.39 Aligned_cols=54 Identities=17% Similarity=0.209 Sum_probs=30.5
Q ss_pred CCeEEEeeC-CCCCCCchHHHHHHHHHHHHHHHHcCC-eEEEEcC-CCCChHHHHHHHHh
Q psy7473 77 GVEFLQLST-RDIFDTPDQDKLERGVDFIQRISKTGG-TVYVHCK-AGRTRSATLVGCYL 133 (136)
Q Consensus 77 ~i~~~~~p~-~D~~~~~~~~~~~~~~~~i~~~~~~~~-~VlVHC~-~G~~RS~~v~~ayL 133 (136)
+-..|-+.+ .|.+.. .+++.+...++.+.++|- +|+|||- .|++=.+.-+.-|+
T Consensus 105 ~~~lHl~GL~SdGgVH---sh~~hl~~l~~~a~~~g~~~v~vH~~~DGRD~~p~s~~~~~ 161 (501)
T TIGR01307 105 NGKLHLMGLVSDGGVH---SHIDHLIALIELAAERGIEKVVLHAFTDGRDTAPKSAESYL 161 (501)
T ss_pred CCceEEEEeccCCCCc---chHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCchhHHHHH
Confidence 444555554 443322 344555566666666665 7999994 57665555554444
No 272
>PRK10318 hypothetical protein; Provisional
Probab=29.79 E-value=75 Score=20.28 Aligned_cols=27 Identities=19% Similarity=0.476 Sum_probs=19.2
Q ss_pred HHHHHHHHHHH----HcCCeEEEEcCCCCCh
Q psy7473 98 ERGVDFIQRIS----KTGGTVYVHCKAGRTR 124 (136)
Q Consensus 98 ~~~~~~i~~~~----~~~~~VlVHC~~G~~R 124 (136)
..+-+||+.+. -.|+|=.|+|..|.-+
T Consensus 71 ~taE~FI~~~ASkSs~SGkpY~V~c~~~~~~ 101 (121)
T PRK10318 71 DTAEQFIDKVASSSSISGKPYIVKCPGKSDE 101 (121)
T ss_pred ccHHHHHHHHhhhcccCCCCeEEEcCCCCcc
Confidence 44446666655 3589999999999653
No 273
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=29.68 E-value=64 Score=21.52 Aligned_cols=25 Identities=12% Similarity=0.049 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEEcC
Q psy7473 95 DKLERGVDFIQRISKTGGTVYVHCK 119 (136)
Q Consensus 95 ~~~~~~~~~i~~~~~~~~~VlVHC~ 119 (136)
+.++++.+.++++.+.+++.+|+..
T Consensus 151 ~~l~~~~~al~~a~~~~gp~lI~v~ 175 (178)
T cd02008 151 YDLKAIREELKEALAVPGVSVIIAK 175 (178)
T ss_pred cCHHHHHHHHHHHHhCCCCEEEEEe
Confidence 3455566667777777899999875
No 274
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=29.68 E-value=2.1e+02 Score=21.66 Aligned_cols=85 Identities=15% Similarity=0.280 Sum_probs=47.9
Q ss_pred cEEEeCCCCcccHHHHHhcCCCEEEEcccCcccc---cccChhhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHHH
Q psy7473 32 NIILGALPFKRLTNKLLEENVKGVVSMNEDYELY---FANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRIS 108 (136)
Q Consensus 32 ~l~~g~~~~~~~~~~l~~~gi~~Vi~l~~~~~~~---~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~ 108 (136)
.+++|.-....-.+.++++|.+.++-++...-.. +....+..+..|+++..+ .+....+..+.++++++.+++.
T Consensus 6 ~i~~G~g~l~~l~~~l~~~g~~~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~~--~~v~~~p~~~~v~~~~~~~~~~- 82 (374)
T cd08189 6 KLFVGSGSLAQLPAAISQLGVKKVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVY--DGVPPDPTIENVEAGLALYREN- 82 (374)
T ss_pred eEEECcCHHHHHHHHHHhcCCCeEEEEeCcchhhcccHHHHHHHHHhcCCeEEEe--CCCCCCcCHHHHHHHHHHHHhc-
Confidence 4667754334444567778888888777653211 111123345567777554 3444467777788877776553
Q ss_pred HcCCeEEEEcCCC
Q psy7473 109 KTGGTVYVHCKAG 121 (136)
Q Consensus 109 ~~~~~VlVHC~~G 121 (136)
+--++|=--+|
T Consensus 83 --~~d~IIaiGGG 93 (374)
T cd08189 83 --GCDAILAVGGG 93 (374)
T ss_pred --CCCEEEEeCCc
Confidence 33455544444
No 275
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=29.40 E-value=70 Score=21.87 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCC
Q psy7473 98 ERGVDFIQRISKTGGTVYVHCKA 120 (136)
Q Consensus 98 ~~~~~~i~~~~~~~~~VlVHC~~ 120 (136)
+++.+.++++.+.++|++|||..
T Consensus 167 ~~l~~a~~~a~~~~~P~~I~~~T 189 (195)
T cd02007 167 EALIKVLKEVKDLKGPVLLHVVT 189 (195)
T ss_pred HHHHHHHHHHHhCCCCEEEEEEE
Confidence 34444555555667899999864
No 276
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=29.35 E-value=75 Score=23.55 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCCC
Q psy7473 98 ERGVDFIQRISKTGGTVYVHCKAG 121 (136)
Q Consensus 98 ~~~~~~i~~~~~~~~~VlVHC~~G 121 (136)
..+.+.++.+.+.|.+|.|||...
T Consensus 113 ~~l~~~~e~~~~~g~~V~vHaE~~ 136 (335)
T cd01294 113 EKIYPVLEAMQKLGMPLLVHGEVP 136 (335)
T ss_pred HHHHHHHHHHHHcCCeEEEecCCC
Confidence 445555566667789999999653
No 277
>PF05925 IpgD: Enterobacterial virulence protein IpgD; InterPro: IPR008108 Some Gram-negative animal enteropathogens express a specialised secretion system to directly "inject" exotoxins into the cytoplasm of host cells. Dubbed the type III secretion system, it is of specific interest to researchers, as the components of such a system are only expressed in pathogenic strains []. The system is composed of structural proteins and exotoxin effectors; these are often encoded on large virulence plasmids or on the bacterial chromosome itself []. The Shigella flexneri invasion plasmid antigen (ipa) genes are found on such a plasmid, and are arranged into an operon. Directly upstream of this operon is another cluster of type III genes, termed ipgD, E and F []. Deletion mutational studies of all three genes showed they were essential for virulence in S. flexneri, and that IpgD is secreted by the type III needle to the outside of the bacterial cell []. Further analysis of the ipg operon confirmed that the IpgD gene product is chaperoned by the IpgE protein while in the bacterial cytoplasm []. More recently, a large study into the spread of the ipa/mxi/ipg pathogenicity islands through their relevant plasmid has revealed that homologues exist in many different Shigella strains, as well as enteroinvasive Escherichia coli and Salmonella spp []. There is evidence that the genes were acquired from Shigella through lateral transfer, like most of the other type III secretion system virulence plasmids.; GO: 0016791 phosphatase activity, 0009405 pathogenesis; PDB: 4DID_B.
Probab=29.35 E-value=18 Score=28.93 Aligned_cols=21 Identities=29% Similarity=0.566 Sum_probs=0.0
Q ss_pred cCCeEEEEcCCCCChHHHHHH
Q psy7473 110 TGGTVYVHCKAGRTRSATLVG 130 (136)
Q Consensus 110 ~~~~VlVHC~~G~~RS~~v~~ 130 (136)
-|.....-|++|++|||++-+
T Consensus 452 iGavp~~NCKSGKDRTG~lD~ 472 (559)
T PF05925_consen 452 IGAVPCWNCKSGKDRTGMLDA 472 (559)
T ss_dssp ---------------------
T ss_pred hCCeeeccCccCCccccccHH
Confidence 356778899999999998644
No 278
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=29.33 E-value=2.9e+02 Score=21.98 Aligned_cols=83 Identities=18% Similarity=0.117 Sum_probs=51.2
Q ss_pred EEeCCCCcccH-H----HHHhcCCCEEEEcccCccc-ccccChhhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHH
Q psy7473 34 ILGALPFKRLT-N----KLLEENVKGVVSMNEDYEL-YFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRI 107 (136)
Q Consensus 34 ~~g~~~~~~~~-~----~l~~~gi~~Vi~l~~~~~~-~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~ 107 (136)
+-|+.|+-.+. - ..++.|.++|---+..... ..+.........|...+.+..++...++....+.++-..++..
T Consensus 116 ~tGGEPTvr~DL~eiv~~a~e~g~~hVqinTnGirlA~~~~~~~~l~~ag~~tvYlsFDG~~e~~~~~~~~eIk~alen~ 195 (475)
T COG1964 116 FTGGEPTLRDDLIEIIKIAREEGYDHVQLNTNGIRLAFDPEYVKKLREAGVNTVYLSFDGVTPKTNWKNHWEIKQALENC 195 (475)
T ss_pred ecCCCccchhhHHHHHHHHhhcCccEEEEccCceeeccCHHHHHHHHhcCCcEEEEecCCCCCCchhhHhhhhHHHHHHH
Confidence 56777776533 2 3555999887543332221 1122233455678888888888887666666666666667777
Q ss_pred HHcC--CeEEE
Q psy7473 108 SKTG--GTVYV 116 (136)
Q Consensus 108 ~~~~--~~VlV 116 (136)
.+.| ..|||
T Consensus 196 r~~g~~svVLV 206 (475)
T COG1964 196 RKAGLPSVVLV 206 (475)
T ss_pred HhcCCCcEEEE
Confidence 6665 25776
No 279
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=29.33 E-value=1.3e+02 Score=20.93 Aligned_cols=35 Identities=20% Similarity=0.220 Sum_probs=24.9
Q ss_pred CchHHHHHHHHHHHHHHH----HcCCeEEEEcCCCCChH
Q psy7473 91 TPDQDKLERGVDFIQRIS----KTGGTVYVHCKAGRTRS 125 (136)
Q Consensus 91 ~~~~~~~~~~~~~i~~~~----~~~~~VlVHC~~G~~RS 125 (136)
+...+..+++.+++++.. ..+++|+|=|.+|.-|+
T Consensus 150 Es~~~~~~Rv~~~l~~~i~~~~~~~~~vlvVsHg~vir~ 188 (228)
T PRK14116 150 ENLKVTLERVIPFWEDHIAPDLLDGKNVIIAAHGNSLRA 188 (228)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhcCCCeEEEEcChHHHHH
Confidence 344555677777776644 24689999999998886
No 280
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=29.27 E-value=1.2e+02 Score=22.59 Aligned_cols=25 Identities=16% Similarity=0.163 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHcCCeEEEEcCCC
Q psy7473 97 LERGVDFIQRISKTGGTVYVHCKAG 121 (136)
Q Consensus 97 ~~~~~~~i~~~~~~~~~VlVHC~~G 121 (136)
+.++.+.++.+...|-++.+||..+
T Consensus 277 i~~~~~i~~~a~~~g~~~~~~~~~~ 301 (357)
T cd03316 277 ITEAKKIAALAEAHGVRVAPHGAGG 301 (357)
T ss_pred HHHHHHHHHHHHHcCCeEeccCCCC
Confidence 4556666666677888999999755
No 281
>PF09002 DUF1887: Domain of unknown function (DUF1887); InterPro: IPR015093 This entry represents a set of hypothetical bacterial and archaeal proteins. ; PDB: 1XMX_A.
Probab=29.20 E-value=2.6e+02 Score=21.37 Aligned_cols=93 Identities=13% Similarity=0.196 Sum_probs=39.3
Q ss_pred EeCCCCcccHHHHHh--cCCCEEEEcccCccc-ccccChhhhhhcCCeEEEeeCCCCCCCchHHHHHH-HHHHHHHHHHc
Q psy7473 35 LGALPFKRLTNKLLE--ENVKGVVSMNEDYEL-YFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLER-GVDFIQRISKT 110 (136)
Q Consensus 35 ~g~~~~~~~~~~l~~--~gi~~Vi~l~~~~~~-~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~-~~~~i~~~~~~ 110 (136)
+|.++.+.-...|.+ ...+.||=+.++... ............++++..+.+.|. ...+.+.+ +.+.+++...
T Consensus 8 vseQ~~pnll~~ll~~~~~p~kvvlI~t~~~~~~~~~L~~~l~~~~~~~e~~~i~d~---~d~~~i~~~l~~l~~~~~~- 83 (381)
T PF09002_consen 8 VSEQPIPNLLPILLDRKFKPDKVVLIGTEDMKEKAERLKSVLKQRGIKVEFFEIPDE---YDIEEIKESLEQLLEKLKA- 83 (381)
T ss_dssp ---SS-HHHHHHHHSTT----EEEEEE-GGGHHHHHHHHHHHHHTT-EEEEEE--SS---S-HHHHHHHHHHHHHHHHH-
T ss_pred ecCCCccceehhhhhccCCCCEEEEEECchHHHHHHHHHHHHHhcCCCceEEecCCh---hhHHHHHHHHHHHHHhccC-
Confidence 444544433333232 456777777766542 111122334557888877777652 22333333 3333333333
Q ss_pred CCeEEEEcCCCCChHHHHHHHHh
Q psy7473 111 GGTVYVHCKAGRTRSATLVGCYL 133 (136)
Q Consensus 111 ~~~VlVHC~~G~~RS~~v~~ayL 133 (136)
+..|.++=++| .-.+.++||-
T Consensus 84 ~~~i~lNlTGG--TK~MaLaay~ 104 (381)
T PF09002_consen 84 GDEIILNLTGG--TKLMALAAYE 104 (381)
T ss_dssp T-EEEEE-SSS---HHHHHHHHH
T ss_pred CCeEEEEeCCC--hHHHHHHHHH
Confidence 78999988887 3345566653
No 282
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=29.16 E-value=1.8e+02 Score=19.44 Aligned_cols=49 Identities=22% Similarity=0.345 Sum_probs=26.3
Q ss_pred hhhcCCeEEEeeC--CCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCCCCChH
Q psy7473 73 WNKVGVEFLQLST--RDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRS 125 (136)
Q Consensus 73 ~~~~~i~~~~~p~--~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS 125 (136)
....|+.+....+ .|+. .+.. +++.+.+.+..++|.-||.|+..+...|
T Consensus 116 l~~~G~~~v~w~~~~~D~~-~~~~---~~i~~~~~~~~~~g~Iil~Hd~~~~~~t 166 (191)
T TIGR02764 116 AESLGYTVVHWSVDSRDWK-NPGV---ESIVDRVVKNTKPGDIILLHASDSAKQT 166 (191)
T ss_pred HHHcCCeEEEecCCCCccC-CCCH---HHHHHHHHhcCCCCCEEEEeCCCCcHhH
Confidence 4456777655443 2333 2222 3344444455577889999995443333
No 283
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=29.08 E-value=2.3e+02 Score=21.45 Aligned_cols=48 Identities=15% Similarity=0.273 Sum_probs=34.9
Q ss_pred hhhhhhcCCeEEEeeCCCCCCC-------chHHHHHHHHHHHHHHHHcCCeEEEE
Q psy7473 70 REEWNKVGVEFLQLSTRDIFDT-------PDQDKLERGVDFIQRISKTGGTVYVH 117 (136)
Q Consensus 70 ~~~~~~~~i~~~~~p~~D~~~~-------~~~~~~~~~~~~i~~~~~~~~~VlVH 117 (136)
.+..+.+|+.|+++.+-.++.. .-..+++.+++.-.++.+.|-+||+-
T Consensus 69 ~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~d 123 (403)
T COG3867 69 LQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLD 123 (403)
T ss_pred HHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEee
Confidence 3456779999999986544311 11356888889888999999999874
No 284
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=28.76 E-value=2.2e+02 Score=23.45 Aligned_cols=18 Identities=11% Similarity=0.045 Sum_probs=13.9
Q ss_pred HcCCeEEEEcCCCCChHH
Q psy7473 109 KTGGTVYVHCKAGRTRSA 126 (136)
Q Consensus 109 ~~~~~VlVHC~~G~~RS~ 126 (136)
.++.+|+|.|..|..+++
T Consensus 79 ~~d~~VVvYd~~g~~~A~ 96 (610)
T PRK09629 79 NPDAVYVVYDDEGGGWAG 96 (610)
T ss_pred CCCCEEEEECCCCCchHH
Confidence 567899999998855554
No 285
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=28.74 E-value=58 Score=18.49 Aligned_cols=19 Identities=26% Similarity=0.337 Sum_probs=14.1
Q ss_pred HHHHHHHHcCCeEEEEcCC
Q psy7473 102 DFIQRISKTGGTVYVHCKA 120 (136)
Q Consensus 102 ~~i~~~~~~~~~VlVHC~~ 120 (136)
+.+.++.+++++|+|...+
T Consensus 8 ~al~~A~~~~kpvlv~f~a 26 (82)
T PF13899_consen 8 EALAEAKKEGKPVLVDFGA 26 (82)
T ss_dssp HHHHHHHHHTSEEEEEEET
T ss_pred HHHHHHHHcCCCEEEEEEC
Confidence 3455677789999999853
No 286
>COG4860 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.62 E-value=1.8e+02 Score=19.27 Aligned_cols=40 Identities=18% Similarity=0.271 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEEEEcCCCCChHHHHHHHH
Q psy7473 93 DQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCY 132 (136)
Q Consensus 93 ~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ay 132 (136)
+.+.+++..+.|....++|+.++..-+.-.+-+++++.+.
T Consensus 109 sdeev~ey~~ei~~l~e~g~ts~~~vt~~Ln~~p~~irai 148 (170)
T COG4860 109 SDEEVKEYEDEIKALMEEGNTSFLDVTDTLNISPTLIRAI 148 (170)
T ss_pred CHHHHHHHHHHHHHHHHcCCceEeehhhhcCCChHHHHHH
Confidence 4567888888888888999988887777777788877664
No 287
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=28.43 E-value=94 Score=23.86 Aligned_cols=31 Identities=16% Similarity=0.082 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHcCCeEEEEcCC--CCChHHH
Q psy7473 97 LERGVDFIQRISKTGGTVYVHCKA--GRTRSAT 127 (136)
Q Consensus 97 ~~~~~~~i~~~~~~~~~VlVHC~~--G~~RS~~ 127 (136)
+.++.+.++.+...|-++.+||.. |++.+++
T Consensus 298 it~~~kia~~A~~~gi~~~~h~~~e~~i~~aa~ 330 (395)
T cd03323 298 MRGSVRVAQVCETWGLGWGMHSNNHLGISLAMM 330 (395)
T ss_pred HHHHHHHHHHHHHcCCeEEEecCcccHHHHHHH
Confidence 345556666667788899999975 5655543
No 288
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=28.41 E-value=1.8e+02 Score=19.30 Aligned_cols=33 Identities=12% Similarity=0.165 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEEcCCCCChHHH
Q psy7473 95 DKLERGVDFIQRISKTGGTVYVHCKAGRTRSAT 127 (136)
Q Consensus 95 ~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~ 127 (136)
..+.++.+.+++......||||.=..|-|.+-.
T Consensus 6 ~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~l 38 (168)
T PF00158_consen 6 PAMKRLREQAKRAASSDLPVLITGETGTGKELL 38 (168)
T ss_dssp HHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHH
Confidence 467788888888888889999999999998843
No 289
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=28.38 E-value=2.1e+02 Score=20.05 Aligned_cols=77 Identities=17% Similarity=0.184 Sum_probs=39.9
Q ss_pred ccHHHHHhcCCCEEEEcccCcccccccChhhhhhcCCeEEEeeCCCCC----CCchHHHHHHHHHHHHHHHHcCCeEEEE
Q psy7473 42 RLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIF----DTPDQDKLERGVDFIQRISKTGGTVYVH 117 (136)
Q Consensus 42 ~~~~~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~i~~~~~p~~D~~----~~~~~~~~~~~~~~i~~~~~~~~~VlVH 117 (136)
.-.+.|++.|+..|++-..... ..+..... ...++.|+++-=.+.. ..=+.+.+++.++.|.+..++++.|+|-
T Consensus 133 ~~~~~l~~~~~~~v~~d~~~~~-~~p~~~~~-~~~~~~y~RlhG~~~~~~~~~~Ys~~eL~~~a~~i~~~~~~~~~v~v~ 210 (230)
T PF01904_consen 133 EVFELLREHGVALVIADSPRLP-SLPPPEPQ-TTPDFAYVRLHGRNGEGWYDYRYSDEELEEWAERIRAWAAQGKEVYVF 210 (230)
T ss_dssp HHHHHHHHTT-EEEEEE---BT-TC-------SSTTEEEEEE--S-TTTTTB----HHHHHHHHHHHHHHHTCSSEEEEE
T ss_pred HHHHHHHHcCCEEEEeCCcccC-CCCCcccc-cCCCCeEEeeccCcccccccccCCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 3356788899999987655511 11111111 1136677665433221 1124578899999999988888887776
Q ss_pred cCC
Q psy7473 118 CKA 120 (136)
Q Consensus 118 C~~ 120 (136)
...
T Consensus 211 fnN 213 (230)
T PF01904_consen 211 FNN 213 (230)
T ss_dssp E-S
T ss_pred EeC
Confidence 554
No 290
>PRK14071 6-phosphofructokinase; Provisional
Probab=28.29 E-value=2.7e+02 Score=21.23 Aligned_cols=82 Identities=10% Similarity=0.153 Sum_probs=45.9
Q ss_pred HHHHHhcCCCEEEEcccCcccccccChhhhhh-cCCeEEEeeC-CCCCCC--ch----HHHHHHHHHHHHHHH---HcCC
Q psy7473 44 TNKLLEENVKGVVSMNEDYELYFANGREEWNK-VGVEFLQLST-RDIFDT--PD----QDKLERGVDFIQRIS---KTGG 112 (136)
Q Consensus 44 ~~~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~~-~~i~~~~~p~-~D~~~~--~~----~~~~~~~~~~i~~~~---~~~~ 112 (136)
.+.|++++|+.+|-+..+..... .....+ .++..+.+|- .|.+-+ +. ....+.+.+.|+... ...+
T Consensus 100 ~~~l~~~~Id~Li~IGGdgS~~~---a~~L~~~~~i~vIgiPkTIDNDl~~td~t~Gf~TA~~~~~~~id~i~~ta~s~~ 176 (360)
T PRK14071 100 IDGYHSLGLDALIGIGGDGSLAI---LRRLAQQGGINLVGIPKTIDNDVGATEVSIGFDTAVNIATEALDRLHFTAASHN 176 (360)
T ss_pred HHHHHHcCCCEEEEECChhHHHH---HHHHHHhcCCcEEEecccccCCCcCcccCcChhHHHHHHHHHHHHHHhhhcccC
Confidence 35688899999999998865311 112222 3899999993 343311 11 122333444444333 2334
Q ss_pred eEEEEcCCCCChHHHHH
Q psy7473 113 TVYVHCKAGRTRSATLV 129 (136)
Q Consensus 113 ~VlVHC~~G~~RS~~v~ 129 (136)
+|+|.=..|. .+|-++
T Consensus 177 rv~ivEvMGR-~~G~LA 192 (360)
T PRK14071 177 RVMILEVMGR-DAGHIA 192 (360)
T ss_pred CEEEEEECCC-CccHHH
Confidence 7888777774 444443
No 291
>KOG1018|consensus
Probab=28.22 E-value=93 Score=21.03 Aligned_cols=29 Identities=28% Similarity=0.403 Sum_probs=21.4
Q ss_pred chHHHHHHHHHHHHHHHHcC-----CeEEEEcCCC
Q psy7473 92 PDQDKLERGVDFIQRISKTG-----GTVYVHCKAG 121 (136)
Q Consensus 92 ~~~~~~~~~~~~i~~~~~~~-----~~VlVHC~~G 121 (136)
...+.+.+++++-.++.+.+ +.|+||| .|
T Consensus 10 ~~~~~m~~a~eea~ka~d~~~~~pvg~vlV~~-~g 43 (169)
T KOG1018|consen 10 HDIAFMVEAVEEAKKALDEGDEVPVGAVLVHM-DG 43 (169)
T ss_pred ccHHHHHHHHHHHHhhccCCCCCceEEEEEeC-CC
Confidence 34567778888887877766 5899999 44
No 292
>smart00411 BHL bacterial (prokaryotic) histone like domain.
Probab=28.21 E-value=1.3e+02 Score=17.40 Aligned_cols=27 Identities=15% Similarity=0.223 Sum_probs=21.7
Q ss_pred CchHHHHHHHHHHHHHHHHcCCeEEEE
Q psy7473 91 TPDQDKLERGVDFIQRISKTGGTVYVH 117 (136)
Q Consensus 91 ~~~~~~~~~~~~~i~~~~~~~~~VlVH 117 (136)
.+....++.+.+.|.+++.+|+.|-++
T Consensus 19 ~~v~~vl~~l~~~i~~~L~~g~~V~i~ 45 (90)
T smart00411 19 KDAKAAVDAFLEIITEALKKGEKVELR 45 (90)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence 445567888889999999999988775
No 293
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=28.19 E-value=87 Score=20.66 Aligned_cols=23 Identities=13% Similarity=0.166 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHcCCeEEEEcC
Q psy7473 97 LERGVDFIQRISKTGGTVYVHCK 119 (136)
Q Consensus 97 ~~~~~~~i~~~~~~~~~VlVHC~ 119 (136)
.+++.+.++++.+.+++.+|||.
T Consensus 155 ~~el~~al~~a~~~~~p~vi~v~ 177 (178)
T cd02002 155 PEELDEALREALAEGGPALIEVV 177 (178)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEE
Confidence 34455556666667899999984
No 294
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=28.11 E-value=83 Score=20.20 Aligned_cols=26 Identities=12% Similarity=0.194 Sum_probs=16.1
Q ss_pred cEEEeCCCC------cccHHHHHhcCCCEEEE
Q psy7473 32 NIILGALPF------KRLTNKLLEENVKGVVS 57 (136)
Q Consensus 32 ~l~~g~~~~------~~~~~~l~~~gi~~Vi~ 57 (136)
.+++|+.+. +.+...|+++|++.|..
T Consensus 83 ~vivGG~~~i~~~d~~~~~~~L~~~Gv~~vf~ 114 (128)
T cd02072 83 LLYVGGNLVVGKQDFEDVEKRFKEMGFDRVFA 114 (128)
T ss_pred eEEEECCCCCChhhhHHHHHHHHHcCCCEEEC
Confidence 467777642 22335577788887774
No 295
>cd04862 PaeLigD_Pol_like PaeLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The PaeLigD Pol domain in vitro, in a manganese-dependent fashion, catalyzes templated extensions of 5'-overhang duplex DNA, and nontemplated single-nu
Probab=27.89 E-value=96 Score=22.09 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=14.6
Q ss_pred HcCCeEEEEcCCCCChHHHHHHHH
Q psy7473 109 KTGGTVYVHCKAGRTRSATLVGCY 132 (136)
Q Consensus 109 ~~~~~VlVHC~~G~~RS~~v~~ay 132 (136)
+++|+|+|=+..- +|..|+++.|
T Consensus 186 ~R~gkvfiDylqN-~~g~T~vapY 208 (227)
T cd04862 186 KRVGKIFIDYLRN-GRGATAVAPY 208 (227)
T ss_pred hCCCcEEEECccC-CCCCeEEecc
Confidence 3678999998652 2444455555
No 296
>KOG0538|consensus
Probab=27.82 E-value=2e+02 Score=21.80 Aligned_cols=34 Identities=21% Similarity=0.423 Sum_probs=21.1
Q ss_pred CccccccCc-EEEeCCCCcccHHHHHhcCCCEEEE
Q psy7473 24 RWYDRIDEN-IILGALPFKRLTNKLLEENVKGVVS 57 (136)
Q Consensus 24 ~~~~~i~~~-l~~g~~~~~~~~~~l~~~gi~~Vi~ 57 (136)
.|...++.- +.+-+....+|...-.++|+.-||-
T Consensus 216 ~wLr~~T~LPIvvKGilt~eDA~~Ave~G~~GIIV 250 (363)
T KOG0538|consen 216 KWLRSITKLPIVVKGVLTGEDARKAVEAGVAGIIV 250 (363)
T ss_pred HHHHhcCcCCeEEEeecccHHHHHHHHhCCceEEE
Confidence 344555543 5566666666666666788877774
No 297
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=27.75 E-value=2.1e+02 Score=19.79 Aligned_cols=65 Identities=17% Similarity=0.188 Sum_probs=31.1
Q ss_pred HHHHhcCCCEEEEcccCcccccccChhhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCCC
Q psy7473 45 NKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAG 121 (136)
Q Consensus 45 ~~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G 121 (136)
+.|.+.|.+.++......+. .+.....++.++...+.| .+.++++++.+.+... +-.++|||.+.
T Consensus 25 ~~l~~~G~~v~~~~~~~~~~-----~~~l~~~~~~~~~~Dl~~------~~~~~~~~~~~~~~~~-~id~li~~ag~ 89 (255)
T PRK06463 25 EAFLREGAKVAVLYNSAENE-----AKELREKGVFTIKCDVGN------RDQVKKSKEVVEKEFG-RVDVLVNNAGI 89 (255)
T ss_pred HHHHHCCCEEEEEeCCcHHH-----HHHHHhCCCeEEEecCCC------HHHHHHHHHHHHHHcC-CCCEEEECCCc
Confidence 45667787665543332211 122222344443333332 2455555555544321 23689999754
No 298
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=27.58 E-value=1.6e+02 Score=22.17 Aligned_cols=77 Identities=14% Similarity=0.209 Sum_probs=42.0
Q ss_pred cccccCcEEEeCCCCcccHHHHHhcCCCEEEEcccCccc-------cccc-ChhhhhhcC-CeEEEeeCCCCCCCchHHH
Q psy7473 26 YDRIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYEL-------YFAN-GREEWNKVG-VEFLQLSTRDIFDTPDQDK 96 (136)
Q Consensus 26 ~~~i~~~l~~g~~~~~~~~~~l~~~gi~~Vi~l~~~~~~-------~~~~-~~~~~~~~~-i~~~~~p~~D~~~~~~~~~ 96 (136)
=|+..+.=|++... ..-.+.|.+.|++.|+-++-..-. .... ..+.+...| ..|.++|...++ .+.
T Consensus 232 QS~~G~~~WL~P~t-~~~l~~L~~~g~k~iiv~pigFvsDhlETL~Eid~e~~e~~~~~Gg~~y~rip~lN~~----p~f 306 (320)
T COG0276 232 QSRFGPEPWLQPYT-DDLLEELGEKGVKKIIVVPIGFVSDHLETLYEIDHEYRELAEEAGGKKYVRIPCLNDS----PEF 306 (320)
T ss_pred ecCCCCCCCCCCCH-HHHHHHHHhcCCCeEEEECCchhhhhHHHHHHHHHHHHHHHHHhCCccEEecCCCCCC----HHH
Confidence 34444445555442 333456777899999887754311 0000 112233455 999999988654 244
Q ss_pred HHHHHHHHHHH
Q psy7473 97 LERGVDFIQRI 107 (136)
Q Consensus 97 ~~~~~~~i~~~ 107 (136)
++-+.+.+++.
T Consensus 307 i~~la~lv~~~ 317 (320)
T COG0276 307 IDALADLVREL 317 (320)
T ss_pred HHHHHHHHHHH
Confidence 45555555443
No 299
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=27.53 E-value=83 Score=22.41 Aligned_cols=32 Identities=19% Similarity=0.145 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHcCCeEEEEcC--CCCChHHHH
Q psy7473 97 LERGVDFIQRISKTGGTVYVHCK--AGRTRSATL 128 (136)
Q Consensus 97 ~~~~~~~i~~~~~~~~~VlVHC~--~G~~RS~~v 128 (136)
+.++.+.++.+...|-++.+||. .|++.++.+
T Consensus 217 i~~~~~~~~~A~~~gi~~~~~~~~~s~i~~~a~~ 250 (265)
T cd03315 217 LTKAQRVLAVAEALGLPVMVGSMIESGLGTLANA 250 (265)
T ss_pred HHHHHHHHHHHHHcCCcEEecCccchHHHHHHHH
Confidence 34455555556678889999996 455555443
No 300
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=27.44 E-value=1.4e+02 Score=17.81 Aligned_cols=25 Identities=32% Similarity=0.636 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHcCCeEEEEcCC
Q psy7473 96 KLERGVDFIQRISKTGGTVYVHCKA 120 (136)
Q Consensus 96 ~~~~~~~~i~~~~~~~~~VlVHC~~ 120 (136)
.++.+.+++.+..+++++++|-|..
T Consensus 13 k~~~i~~~i~~~~~~~~~~lvf~~~ 37 (131)
T cd00079 13 KLEALLELLKEHLKKGGKVLIFCPS 37 (131)
T ss_pred HHHHHHHHHHhcccCCCcEEEEeCc
Confidence 3444445554444345566666653
No 301
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=27.41 E-value=46 Score=22.45 Aligned_cols=30 Identities=7% Similarity=0.044 Sum_probs=23.6
Q ss_pred cccccCcEEEeCCCCcccHHH--HHhcCCCEEE
Q psy7473 26 YDRIDENIILGALPFKRLTNK--LLEENVKGVV 56 (136)
Q Consensus 26 ~~~i~~~l~~g~~~~~~~~~~--l~~~gi~~Vi 56 (136)
|+-..|++++.+... -+.+. |++.||+.||
T Consensus 14 p~l~~P~l~V~si~~-I~~~~~~Lk~~Gik~li 45 (168)
T PF09419_consen 14 PSLLLPHLYVPSIRD-IDFEANHLKKKGIKALI 45 (168)
T ss_pred ccccCCCEEcCChhh-CCcchhhhhhcCceEEE
Confidence 677888999987743 35566 9999999988
No 302
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=27.32 E-value=2.8e+02 Score=21.15 Aligned_cols=74 Identities=11% Similarity=0.051 Sum_probs=44.4
Q ss_pred HHHhcCCCEEEEcccCccc---ccccChhhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCCCC
Q psy7473 46 KLLEENVKGVVSMNEDYEL---YFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGR 122 (136)
Q Consensus 46 ~l~~~gi~~Vi~l~~~~~~---~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~ 122 (136)
..++.|....+++...... .+..........|... +-+.|......+..+.+.++.+.+.. +-++-+||+.-.
T Consensus 124 ~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~--I~l~DT~G~~~P~~v~~lv~~l~~~~--~~~l~~H~Hnd~ 199 (378)
T PRK11858 124 YAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEAGADR--VRFCDTVGILDPFTMYELVKELVEAV--DIPIEVHCHNDF 199 (378)
T ss_pred HHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhCCCCE--EEEeccCCCCCHHHHHHHHHHHHHhc--CCeEEEEecCCc
Confidence 4566888877765322211 0001112234456665 44557666677788888888887665 568999998655
Q ss_pred C
Q psy7473 123 T 123 (136)
Q Consensus 123 ~ 123 (136)
|
T Consensus 200 G 200 (378)
T PRK11858 200 G 200 (378)
T ss_pred C
Confidence 4
No 303
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=27.21 E-value=2e+02 Score=19.91 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=17.0
Q ss_pred HcCCeEEEEcCCCCChHHHHH
Q psy7473 109 KTGGTVYVHCKAGRTRSATLV 129 (136)
Q Consensus 109 ~~~~~VlVHC~~G~~RS~~v~ 129 (136)
.+.+.|.|+|..|+|-|.+.+
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~ 40 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAF 40 (191)
T ss_pred ccCCeEEEECCCCCChHHHHH
Confidence 456899999999999885544
No 304
>PRK05434 phosphoglyceromutase; Provisional
Probab=27.09 E-value=1.4e+02 Score=23.94 Aligned_cols=55 Identities=20% Similarity=0.244 Sum_probs=31.7
Q ss_pred cCCeEEEeeC-CCCCCCchHHHHHHHHHHHHHHHHcC-CeEEEEc-CCCCChHHHHHHHHh
Q psy7473 76 VGVEFLQLST-RDIFDTPDQDKLERGVDFIQRISKTG-GTVYVHC-KAGRTRSATLVGCYL 133 (136)
Q Consensus 76 ~~i~~~~~p~-~D~~~~~~~~~~~~~~~~i~~~~~~~-~~VlVHC-~~G~~RS~~v~~ayL 133 (136)
.+-..|-+.+ .|.+.. .+++.+...++.+.++| ++|+||| ..|++=++.-+.-|+
T Consensus 108 ~~~~lHl~GL~SdggVH---sh~~hl~~l~~~a~~~g~~~v~vH~~~DGRD~~p~s~~~~i 165 (507)
T PRK05434 108 NGGALHLMGLLSDGGVH---SHIDHLFALLELAKEEGVKKVYVHAFLDGRDTPPKSALGYL 165 (507)
T ss_pred cCCeEEEEEeccCCCcc---cHHHHHHHHHHHHHHcCCCEEEEEEecCCCCCCchhHHHHH
Confidence 3444555554 443322 34555556666666667 4899999 457765555555444
No 305
>PRK05451 dihydroorotase; Provisional
Probab=26.84 E-value=90 Score=23.38 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=15.3
Q ss_pred HHHHHHHHHHcCCeEEEEcCC
Q psy7473 100 GVDFIQRISKTGGTVYVHCKA 120 (136)
Q Consensus 100 ~~~~i~~~~~~~~~VlVHC~~ 120 (136)
..+.++.+.+.|.+|+|||..
T Consensus 120 l~~~~e~~~~~g~~V~vHaE~ 140 (345)
T PRK05451 120 IYPVLEAMQKLGMPLLVHGEV 140 (345)
T ss_pred HHHHHHHHHHcCCEEEEecCC
Confidence 344445566788999999986
No 306
>COG4936 PocR Predicted sensor domain [Signal transduction mechanisms / Transcription]
Probab=26.82 E-value=1.6e+02 Score=19.51 Aligned_cols=48 Identities=17% Similarity=0.209 Sum_probs=29.7
Q ss_pred hhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHH------------------HHcCCeEEEEcCCCC
Q psy7473 74 NKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRI------------------SKTGGTVYVHCKAGR 122 (136)
Q Consensus 74 ~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~------------------~~~~~~VlVHC~~G~ 122 (136)
+..++.-+.+.+...+ ..-...|..+++.|+.. .+.|+|...-|.+|.
T Consensus 21 ~at~lA~VvVdihG~e-vs~l~NftpfCqlirs~pk~~~rC~~sd~~GGlEAsktgkP~IYrChaGL 86 (169)
T COG4936 21 EATRLAAVVVDIHGKE-VSKLSNFTPFCQLIRSTPKGEKRCAESDKKGGLEASKTGKPYIYRCHAGL 86 (169)
T ss_pred HhhceeEEEEecCCce-ecchhcccHHHHHHHhCcchhhHHHhhhcccCeecccCCCcEEEEecCCc
Confidence 3445555555555543 23334566677777653 346889999999996
No 307
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=26.80 E-value=95 Score=21.21 Aligned_cols=22 Identities=18% Similarity=0.176 Sum_probs=17.5
Q ss_pred HHcCCeEEEEcCCCCChHHHHH
Q psy7473 108 SKTGGTVYVHCKAGRTRSATLV 129 (136)
Q Consensus 108 ~~~~~~VlVHC~~G~~RS~~v~ 129 (136)
....|-|.|+|..|+|-|.+..
T Consensus 18 ~~~~Gli~VYtGdGKGKTTAAl 39 (178)
T PRK07414 18 YTIEGLVQVFTSSQRNFFTSVM 39 (178)
T ss_pred CCCCCEEEEEeCCCCCchHHHH
Confidence 3456899999999999886544
No 308
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=26.79 E-value=1.7e+02 Score=25.36 Aligned_cols=49 Identities=14% Similarity=0.094 Sum_probs=34.8
Q ss_pred hhhhcCCeEEEeeCCCC------C---CCchHHHHHHHHHHHHHHHHcCCeEEEEcCC
Q psy7473 72 EWNKVGVEFLQLSTRDI------F---DTPDQDKLERGVDFIQRISKTGGTVYVHCKA 120 (136)
Q Consensus 72 ~~~~~~i~~~~~p~~D~------~---~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~ 120 (136)
.++-.++..+.+|..-. + .....+.+..+++.|.+..+.|.||||-|..
T Consensus 401 f~~iY~l~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~s 458 (908)
T PRK13107 401 FQHIYGLDTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVS 458 (908)
T ss_pred HHHHhCCCEEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCc
Confidence 34446777777776422 1 1223567888889998888999999999974
No 309
>PF11871 DUF3391: Domain of unknown function (DUF3391); InterPro: IPR021812 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is typically between 122 to 139 amino acids in length. This domain is found associated with PF01966 from PFAM.
Probab=26.66 E-value=65 Score=20.00 Aligned_cols=22 Identities=14% Similarity=0.018 Sum_probs=16.1
Q ss_pred CcccHHHHHhcCCCEEEEcccC
Q psy7473 40 FKRLTNKLLEENVKGVVSMNED 61 (136)
Q Consensus 40 ~~~~~~~l~~~gi~~Vi~l~~~ 61 (136)
+..+.+.|++.||..|.--...
T Consensus 37 s~~~I~~L~~~gi~~V~Id~~k 58 (128)
T PF11871_consen 37 SQADIEKLRRLGIQEVYIDPDK 58 (128)
T ss_pred CHHHHHHHHHCCCcEEEEECCC
Confidence 4456778999999998754433
No 310
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=26.62 E-value=29 Score=17.63 Aligned_cols=13 Identities=38% Similarity=0.861 Sum_probs=11.0
Q ss_pred cCCeEEEEcCCCC
Q psy7473 110 TGGTVYVHCKAGR 122 (136)
Q Consensus 110 ~~~~VlVHC~~G~ 122 (136)
++|.|+|.|--|+
T Consensus 7 p~GVIlVF~lVgl 19 (43)
T PF08114_consen 7 PGGVILVFCLVGL 19 (43)
T ss_pred CCCeeeehHHHHH
Confidence 6789999998775
No 311
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=26.57 E-value=2.5e+02 Score=20.30 Aligned_cols=74 Identities=8% Similarity=0.051 Sum_probs=41.5
Q ss_pred HHHhcCCCEEEEcccCc-cc----ccccChhhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCC
Q psy7473 46 KLLEENVKGVVSMNEDY-EL----YFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKA 120 (136)
Q Consensus 46 ~l~~~gi~~Vi~l~~~~-~~----~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~ 120 (136)
..++.|....+++.... .. .+..........|... +-+.|....-.++.+.+.++.+++... .++-+||+.
T Consensus 126 ~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~--i~l~DT~G~~~P~~v~~lv~~l~~~~~--~~l~~H~Hn 201 (275)
T cd07937 126 AVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADS--ICIKDMAGLLTPYAAYELVKALKKEVG--LPIHLHTHD 201 (275)
T ss_pred HHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCE--EEEcCCCCCCCHHHHHHHHHHHHHhCC--CeEEEEecC
Confidence 45567877666553211 10 0011112233456654 445676656677788888887776543 688898875
Q ss_pred CCC
Q psy7473 121 GRT 123 (136)
Q Consensus 121 G~~ 123 (136)
-.|
T Consensus 202 d~G 204 (275)
T cd07937 202 TSG 204 (275)
T ss_pred CCC
Confidence 443
No 312
>TIGR02571 ComEB ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.
Probab=26.39 E-value=2e+02 Score=18.98 Aligned_cols=51 Identities=16% Similarity=0.296 Sum_probs=34.1
Q ss_pred cEEEeCCCCcccHHHHHhcCCCEEEEcccCcccccccChhhhhhcCCeEEEee
Q psy7473 32 NIILGALPFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLS 84 (136)
Q Consensus 32 ~l~~g~~~~~~~~~~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~i~~~~~p 84 (136)
.||..-.|-..=...+...||+.|+-....... ....+.+++.|++..+++
T Consensus 89 tlYvT~ePC~~Ca~ai~~agI~~Vvy~~~~~~~--~~~~~~l~~~gi~v~~~~ 139 (151)
T TIGR02571 89 EIYVTHFPCLQCTKSIIQAGIKKIYYAQDYHNH--PYAIELFEQAGVELKKVP 139 (151)
T ss_pred EEEEeCCCcHHHHHHHHHhCCCEEEEccCCCCc--HHHHHHHHHCCCEEEEeC
Confidence 478777777655566778899999876432210 112446677899988886
No 313
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=26.33 E-value=1.4e+02 Score=22.26 Aligned_cols=63 Identities=19% Similarity=0.244 Sum_probs=33.7
Q ss_pred cccccCcEEEeCCCCcccHHHHHhcCCCEEEEcccCccc-ccc---c----ChhhhhhcCCe-EEEeeCCCCC
Q psy7473 26 YDRIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYEL-YFA---N----GREEWNKVGVE-FLQLSTRDIF 89 (136)
Q Consensus 26 ~~~i~~~l~~g~~~~~~~~~~l~~~gi~~Vi~l~~~~~~-~~~---~----~~~~~~~~~i~-~~~~p~~D~~ 89 (136)
-+.+.+.=|++..- ..-.+.|.+.|++.|+-+.-..-. ... . ..+.+...|.+ +..+|..+++
T Consensus 235 QS~~g~~~Wl~P~~-~~~l~~l~~~G~k~V~vvP~gFv~D~lETl~ei~~e~~~~~~~~G~~~~~~vp~lN~~ 306 (322)
T TIGR00109 235 QSRVGPEPWLGPYT-EELLEKLGEQGVQHIVVVPIGFTADHLETLYEIDEEYREVAEDAGGDKYQRCPALNAK 306 (322)
T ss_pred eCCCCCCCcCCCCH-HHHHHHHHHcCCceEEEECCcccccchhHHHhhhHHHHHHHHHcCCCeEEECCCCCCC
Confidence 34444444554331 223456888899998876643211 000 0 01334556777 8888876654
No 314
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=26.33 E-value=75 Score=23.02 Aligned_cols=20 Identities=20% Similarity=0.400 Sum_probs=14.4
Q ss_pred HHHHHHHHcCCeEEEEcCCC
Q psy7473 102 DFIQRISKTGGTVYVHCKAG 121 (136)
Q Consensus 102 ~~i~~~~~~~~~VlVHC~~G 121 (136)
+........++.|++||++-
T Consensus 82 ~vaa~~~~rpg~iv~HcSga 101 (289)
T COG5495 82 GVAATSLNRPGTIVAHCSGA 101 (289)
T ss_pred HHHHhcccCCCeEEEEccCC
Confidence 33445567889999999853
No 315
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=26.23 E-value=2e+02 Score=19.05 Aligned_cols=14 Identities=29% Similarity=0.306 Sum_probs=9.0
Q ss_pred CeEEEEcCCCCChH
Q psy7473 112 GTVYVHCKAGRTRS 125 (136)
Q Consensus 112 ~~VlVHC~~G~~RS 125 (136)
.+-++-|..|+|=|
T Consensus 63 ~~GIliCGtGiG~s 76 (151)
T PTZ00215 63 DTGILVCGSGIGIS 76 (151)
T ss_pred cEEEEEcCCcHHHH
Confidence 34455599998744
No 316
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins. These proteins are involved in GPI anchor biosynthesis and are associated with the disease paroxysmal nocturnal haemoglobinuria [].; GO: 0006506 GPI anchor biosynthetic process
Probab=26.13 E-value=1.6e+02 Score=17.78 Aligned_cols=51 Identities=12% Similarity=0.124 Sum_probs=37.0
Q ss_pred hhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCCCCC
Q psy7473 73 WNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRT 123 (136)
Q Consensus 73 ~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~ 123 (136)
+-..|++..++|+.-..++.....+-....+++...-+.+--+||-.+-.|
T Consensus 11 yltngLKVYYlP~~~~~~~~t~Pt~~~~~pl~R~IlirE~I~IVHgH~a~S 61 (90)
T PF08288_consen 11 YLTNGLKVYYLPLKVFYNQCTLPTLFGSFPLLRNILIRERIDIVHGHQAFS 61 (90)
T ss_pred EcCCCeEEEeecchhhhcCcchHHHHHhhHHHHHHHHHcCeeEEEeehhhh
Confidence 345788888999877665666667777777888777666777999875543
No 317
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=26.05 E-value=2.3e+02 Score=20.45 Aligned_cols=38 Identities=11% Similarity=0.080 Sum_probs=25.9
Q ss_pred CCCCchHHHHHHHHHHHHHHHHc-----CCeEEEEcCCCCChH
Q psy7473 88 IFDTPDQDKLERGVDFIQRISKT-----GGTVYVHCKAGRTRS 125 (136)
Q Consensus 88 ~~~~~~~~~~~~~~~~i~~~~~~-----~~~VlVHC~~G~~RS 125 (136)
.+..++.++.+++.++|++.+.+ +..+-|-+.++++-.
T Consensus 173 tG~~as~~~~~~v~~~Ir~~l~~~~~~~~~~~~IlYGGSV~~~ 215 (250)
T PRK00042 173 TGKTATPEQAQEVHAFIRAVLAELYGEVAEKVRILYGGSVKPD 215 (250)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcccccCCceEEEcCCCCHH
Confidence 44567889999999999988752 234555566666543
No 318
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=26.01 E-value=2.1e+02 Score=21.54 Aligned_cols=33 Identities=9% Similarity=0.122 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCCCCChHHHHHH
Q psy7473 98 ERGVDFIQRISKTGGTVYVHCKAGRTRSATLVG 130 (136)
Q Consensus 98 ~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ 130 (136)
++..+++..+.+.++.++|....|-|.|..+-+
T Consensus 165 ~~~~~~L~~~v~~~~~ili~G~tGsGKTTll~a 197 (340)
T TIGR03819 165 PGVARLLRAIVAARLAFLISGGTGSGKTTLLSA 197 (340)
T ss_pred HHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHH
Confidence 356677878888889999999999999866543
No 319
>PF15414 DUF4621: Protein of unknown function (DUF4621)
Probab=25.85 E-value=1.3e+02 Score=21.00 Aligned_cols=35 Identities=23% Similarity=0.308 Sum_probs=23.9
Q ss_pred cccccCcEEEeCCCCccc-HHHHHhcCCCEEEEccc
Q psy7473 26 YDRIDENIILGALPFKRL-TNKLLEENVKGVVSMNE 60 (136)
Q Consensus 26 ~~~i~~~l~~g~~~~~~~-~~~l~~~gi~~Vi~l~~ 60 (136)
.+.|.|++|+|......+ ....++.+..-|+.+..
T Consensus 132 lstvspniwigpldpktdafkfvkneklpgivqivp 167 (329)
T PF15414_consen 132 LSTVSPNIWIGPLDPKTDAFKFVKNEKLPGIVQIVP 167 (329)
T ss_pred eeccCCceeecCCCCccchhhhhhcccCCceEEeec
Confidence 788999999999965544 45566666655554443
No 320
>PRK09875 putative hydrolase; Provisional
Probab=25.74 E-value=2.4e+02 Score=20.81 Aligned_cols=37 Identities=11% Similarity=0.006 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEEcC-CCCChHHHHHH
Q psy7473 94 QDKLERGVDFIQRISKTGGTVYVHCK-AGRTRSATLVG 130 (136)
Q Consensus 94 ~~~~~~~~~~i~~~~~~~~~VlVHC~-~G~~RS~~v~~ 130 (136)
.+.++.+++.+.+..+.|++.+|=|+ .|.||.+....
T Consensus 30 l~~~~~~~~el~~~~~~Gg~tiVd~T~~g~GRd~~~l~ 67 (292)
T PRK09875 30 LDQYAFICQEMNDLMTRGVRNVIEMTNRYMGRNAQFML 67 (292)
T ss_pred cccHHHHHHHHHHHHHhCCCeEEecCCCccCcCHHHHH
Confidence 45567777778788888999999995 58999877654
No 321
>PLN02538 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
Probab=25.68 E-value=1.2e+02 Score=24.69 Aligned_cols=54 Identities=13% Similarity=0.111 Sum_probs=30.0
Q ss_pred CCeEEEeeC-CCCCCCchHHHHHHHHHHHHHHHHcCC-eEEEEcC-CCCChHHHHHHHHh
Q psy7473 77 GVEFLQLST-RDIFDTPDQDKLERGVDFIQRISKTGG-TVYVHCK-AGRTRSATLVGCYL 133 (136)
Q Consensus 77 ~i~~~~~p~-~D~~~~~~~~~~~~~~~~i~~~~~~~~-~VlVHC~-~G~~RS~~v~~ayL 133 (136)
+-..|-+.+ .|.+.. .+++.+...++.+.++|- +|+|||. .|++-.+.-+..|+
T Consensus 126 ~~~lHl~GL~SdGGVH---Sh~~Hl~al~~~a~~~gv~~v~vH~f~DGRDt~p~S~~~yl 182 (558)
T PLN02538 126 TGTLHLIGLLSDGGVH---SRLDQLQLLLKGAAERGAKRIRVHVLTDGRDVPDGSSVGFV 182 (558)
T ss_pred CCeeEEEEeccCCCcc---cHHHHHHHHHHHHHHcCCCeEEEEEEcCCCCCCcccHHHHH
Confidence 334444553 443322 345555566666666664 8999994 57665444444443
No 322
>PHA02754 hypothetical protein; Provisional
Probab=25.56 E-value=1.3e+02 Score=16.57 Aligned_cols=24 Identities=8% Similarity=0.303 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEEc
Q psy7473 94 QDKLERGVDFIQRISKTGGTVYVHC 118 (136)
Q Consensus 94 ~~~~~~~~~~i~~~~~~~~~VlVHC 118 (136)
...|.++...+++.+++ ..|+||=
T Consensus 13 eK~Fke~MRelkD~LSe-~GiYi~R 36 (67)
T PHA02754 13 EKDFKEAMRELKDILSE-AGIYIDR 36 (67)
T ss_pred HhHHHHHHHHHHHHHhh-CceEEEE
Confidence 35677777777666654 4577763
No 323
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=25.37 E-value=42 Score=21.25 Aligned_cols=10 Identities=20% Similarity=0.272 Sum_probs=3.9
Q ss_pred CeEEEEcCCC
Q psy7473 112 GTVYVHCKAG 121 (136)
Q Consensus 112 ~~VlVHC~~G 121 (136)
+.+||+|..|
T Consensus 58 ~~~lv~v~VG 67 (119)
T PF06110_consen 58 NARLVYVEVG 67 (119)
T ss_dssp TEEEEEEE--
T ss_pred CceEEEEEcC
Confidence 4445555444
No 324
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=25.36 E-value=2.3e+02 Score=21.03 Aligned_cols=34 Identities=9% Similarity=0.176 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEEcCCCCChHHHH
Q psy7473 95 DKLERGVDFIQRISKTGGTVYVHCKAGRTRSATL 128 (136)
Q Consensus 95 ~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v 128 (136)
..+.++.+.+.++...+.||+|.=..|-|++-..
T Consensus 13 ~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA 46 (326)
T PRK11608 13 NSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIA 46 (326)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHH
Confidence 5678888888888888899999999999988443
No 325
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=25.20 E-value=1e+02 Score=19.90 Aligned_cols=65 Identities=26% Similarity=0.235 Sum_probs=29.5
Q ss_pred cCCCEEEEcccCcccccccChhhh-hhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCCCC
Q psy7473 50 ENVKGVVSMNEDYELYFANGREEW-NKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGR 122 (136)
Q Consensus 50 ~gi~~Vi~l~~~~~~~~~~~~~~~-~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~ 122 (136)
.|+.++|++..+.........+.+ +....+.+-+-++...+ =+++.+.+++.... +||++ ++.|.
T Consensus 26 ~g~s~~vs~Gn~~dv~~~d~l~~~~~D~~t~~I~ly~E~~~d------~~~f~~~~~~a~~~-KPVv~-lk~Gr 91 (138)
T PF13607_consen 26 IGFSYVVSVGNEADVDFADLLEYLAEDPDTRVIVLYLEGIGD------GRRFLEAARRAARR-KPVVV-LKAGR 91 (138)
T ss_dssp -EESEEEE-TT-SSS-HHHHHHHHCT-SS--EEEEEES--S-------HHHHHHHHHHHCCC-S-EEE-EE---
T ss_pred CCeeEEEEeCccccCCHHHHHHHHhcCCCCCEEEEEccCCCC------HHHHHHHHHHHhcC-CCEEE-EeCCC
Confidence 688999999987654222111222 22344555444554331 15566666666665 88877 66675
No 326
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=25.19 E-value=1.2e+02 Score=21.36 Aligned_cols=29 Identities=17% Similarity=0.161 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHcCCeEEEEcCCCCChH
Q psy7473 96 KLERGVDFIQRISKTGGTVYVHCKAGRTRS 125 (136)
Q Consensus 96 ~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS 125 (136)
.++++++-+.... .+++++||+.+|++-+
T Consensus 55 ~i~~vl~~l~~~~-~~~~~ivS~~agi~~~ 83 (245)
T TIGR00112 55 DLEEVLSELKSEK-GKDKLLISIAAGVTLE 83 (245)
T ss_pred HHHHHHHHHhhhc-cCCCEEEEecCCCCHH
Confidence 4555555554433 3457999999998754
No 327
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair.
Probab=25.10 E-value=1.3e+02 Score=24.24 Aligned_cols=30 Identities=10% Similarity=0.090 Sum_probs=22.9
Q ss_pred CchHHHHHHHHHHHHHHHHcCCeEEEEcCC
Q psy7473 91 TPDQDKLERGVDFIQRISKTGGTVYVHCKA 120 (136)
Q Consensus 91 ~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~ 120 (136)
+-....++++++.|.++++++++|+|.+..
T Consensus 34 p~~l~~~~~a~~~i~~~i~~~~~I~I~gh~ 63 (539)
T TIGR00644 34 PFLLKDMEKAVERIIEAIENNEKILIFGDY 63 (539)
T ss_pred hhhcCCHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 334456888888888888888898887754
No 328
>COG0005 Pnp Purine nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=25.09 E-value=1.8e+02 Score=21.21 Aligned_cols=21 Identities=19% Similarity=0.007 Sum_probs=16.5
Q ss_pred cHHHHHhcCCCEEEEcccCcc
Q psy7473 43 LTNKLLEENVKGVVSMNEDYE 63 (136)
Q Consensus 43 ~~~~l~~~gi~~Vi~l~~~~~ 63 (136)
+...|++.|++.||..+.-..
T Consensus 87 ni~alk~lGV~~vi~tnAvGs 107 (262)
T COG0005 87 NIRALKALGVERVILTNAVGS 107 (262)
T ss_pred HHHHHHHcCCeEEEEeccccc
Confidence 356799999999998876543
No 329
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=24.97 E-value=1.6e+02 Score=20.13 Aligned_cols=29 Identities=24% Similarity=0.444 Sum_probs=24.5
Q ss_pred chHHHHHHHHHHHHHHHHcCCeEEEEcCC
Q psy7473 92 PDQDKLERGVDFIQRISKTGGTVYVHCKA 120 (136)
Q Consensus 92 ~~~~~~~~~~~~i~~~~~~~~~VlVHC~~ 120 (136)
-....+.++++++.+...+++.||+-+..
T Consensus 37 ~T~~~L~~A~~~i~~i~~~~g~iLfV~t~ 65 (193)
T cd01425 37 KTLEKLRLALNFIANIAAKGGKILFVGTK 65 (193)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 45578899999999999989999988764
No 330
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=24.86 E-value=1.1e+02 Score=21.93 Aligned_cols=31 Identities=10% Similarity=-0.015 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHcCCeEEEEcCC--CCChHHH
Q psy7473 97 LERGVDFIQRISKTGGTVYVHCKA--GRTRSAT 127 (136)
Q Consensus 97 ~~~~~~~i~~~~~~~~~VlVHC~~--G~~RS~~ 127 (136)
+.++.+..+.+...|-++.+||.. +++.+++
T Consensus 213 it~~~~i~~~a~~~gi~~~~~~~~es~ig~aa~ 245 (263)
T cd03320 213 PRALLELAEEARARGIPAVVSSALESSIGLGAL 245 (263)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcchhhHHHHHHH
Confidence 455566666667788899999964 5555544
No 331
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=24.82 E-value=2.7e+02 Score=20.12 Aligned_cols=73 Identities=16% Similarity=0.062 Sum_probs=37.7
Q ss_pred HHHHhcCCCEEEEcccCcccccccChhhhhhcCCeEEEeeCCCCCCCchHHHH------HHHHHHHHHHHHcCCeEEEEc
Q psy7473 45 NKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKL------ERGVDFIQRISKTGGTVYVHC 118 (136)
Q Consensus 45 ~~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~------~~~~~~i~~~~~~~~~VlVHC 118 (136)
+.|.+.|.+..+-...... ........|++++.++............+ ......+.+..++.++=+|||
T Consensus 22 ~~L~~~g~eV~vv~~~~~~-----~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~i~~~~pDvVi~ 96 (348)
T TIGR01133 22 EELIKRGVEVLWLGTKRGL-----EKRLVPKAGIEFYFIPVGGLRRKGSFRLIKTPLKLLKAVFQARRILKKFKPDAVIG 96 (348)
T ss_pred HHHHhCCCEEEEEeCCCcc-----hhcccccCCCceEEEeccCcCCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 4566677765453322211 01112336888888887553222221111 223333445556667889999
Q ss_pred CCCC
Q psy7473 119 KAGR 122 (136)
Q Consensus 119 ~~G~ 122 (136)
..+.
T Consensus 97 ~~~~ 100 (348)
T TIGR01133 97 FGGY 100 (348)
T ss_pred cCCc
Confidence 8654
No 332
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=24.80 E-value=3.6e+02 Score=21.46 Aligned_cols=98 Identities=16% Similarity=0.059 Sum_probs=50.0
Q ss_pred CcEEEeCCCCccc----HHHHHhcCCCEEEEcccCcccccc-cChhhhhhcC--CeEEEee-CCCCCCCc------hHHH
Q psy7473 31 ENIILGALPFKRL----TNKLLEENVKGVVSMNEDYELYFA-NGREEWNKVG--VEFLQLS-TRDIFDTP------DQDK 96 (136)
Q Consensus 31 ~~l~~g~~~~~~~----~~~l~~~gi~~Vi~l~~~~~~~~~-~~~~~~~~~~--i~~~~~p-~~D~~~~~------~~~~ 96 (136)
++-.+|+--...+ .+.|+++||+.++.+..+....-. ...++....| +..+.+| ..|.+-+. ..-.
T Consensus 152 GGTiLGTSR~~~~~~~iv~~L~~~~I~~L~vIGGdgT~~~A~~L~ee~~~~g~~I~VIGIPKTIDNDI~~td~S~GFdTA 231 (459)
T PTZ00286 152 GGTILGSSRGGFDPKVMVDTLIRHGINILFTLGGDGTHRGALAIYKELRRRKLNISVVGIPKTIDNDIPIIDESFGFQTA 231 (459)
T ss_pred CCceeccCCChhhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCCCcccCcCchHH
Confidence 3555665433222 245888999999999988754111 1122223344 7888888 34443111 1223
Q ss_pred HHHHHHHHHHHH----HcCCeEEEEcCCCCChHHHHH
Q psy7473 97 LERGVDFIQRIS----KTGGTVYVHCKAGRTRSATLV 129 (136)
Q Consensus 97 ~~~~~~~i~~~~----~~~~~VlVHC~~G~~RS~~v~ 129 (136)
++.+.+.|+.+. .....|.|-=..|. .||-++
T Consensus 232 v~~~~~aI~~~~~eA~S~~~~v~iVEvMGR-~sG~LA 267 (459)
T PTZ00286 232 VEEAQNAIRAAYVEAKSAKNGVGIVKLMGR-DSGFIA 267 (459)
T ss_pred HHHHHHHHHHHHHHHHHhcCcEEEEEecCc-chhHHH
Confidence 444455554433 22335655444453 344443
No 333
>TIGR03586 PseI pseudaminic acid synthase.
Probab=24.70 E-value=3.1e+02 Score=20.67 Aligned_cols=29 Identities=10% Similarity=0.303 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEEEEcCCCC
Q psy7473 93 DQDKLERGVDFIQRISKTGGTVYVHCKAGR 122 (136)
Q Consensus 93 ~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~ 122 (136)
..+.+..+++++.+.- ...-+|.||..+-
T Consensus 145 t~~Ei~~Av~~i~~~g-~~~i~LlhC~s~Y 173 (327)
T TIGR03586 145 TLEEIQEAVEACREAG-CKDLVLLKCTSSY 173 (327)
T ss_pred CHHHHHHHHHHHHHCC-CCcEEEEecCCCC
Confidence 4566777777775321 1246899998763
No 334
>TIGR03848 MSMEG_4193 probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.
Probab=24.53 E-value=2.3e+02 Score=19.17 Aligned_cols=35 Identities=9% Similarity=0.024 Sum_probs=22.8
Q ss_pred chHHHHHHHHHHHHHHHH-------cCCeEEEEcCCCCChHH
Q psy7473 92 PDQDKLERGVDFIQRISK-------TGGTVYVHCKAGRTRSA 126 (136)
Q Consensus 92 ~~~~~~~~~~~~i~~~~~-------~~~~VlVHC~~G~~RS~ 126 (136)
...+...++..++++..+ .++.|+|=|.+|.-|+-
T Consensus 118 s~~~~~~R~~~~l~~~~~~~~~~~~~~~~vliVsHg~~ir~l 159 (204)
T TIGR03848 118 SLAQVQARAVAAVREHDARLAAEHGPDAVWVACSHGDVIKSV 159 (204)
T ss_pred CHHHHHHHHHHHHHHHHHHhhhccCCCCEEEEEeCChHHHHH
Confidence 334445566666666542 35689999999987763
No 335
>PF00288 GHMP_kinases_N: GHMP kinases N terminal domain; InterPro: IPR006204 The galacto- (2.7.1.6 from EC), homoserine (2.7.1.39 from EC), mevalonate (2.7.1.36 from EC) and phosphomevalonate (2.7.4.2 from EC) kinases contain, in their N-terminal section, a conserved Gly/Ser-rich region which is probably involved in the binding of ATP [, ]. This group of kinases has been called 'GHMP' (from the first letter of their substrates).; GO: 0005524 ATP binding, 0016301 kinase activity, 0016310 phosphorylation; PDB: 3F0N_B 1PIE_A 2AJ4_A 1K47_E 3GON_A 2R3V_C 3HUL_A 1KVK_A 2R42_A 3D4J_A ....
Probab=24.31 E-value=81 Score=17.14 Aligned_cols=15 Identities=27% Similarity=0.197 Sum_probs=12.3
Q ss_pred CCCChHHHHHHHHhh
Q psy7473 120 AGRTRSATLVGCYLM 134 (136)
Q Consensus 120 ~G~~RS~~v~~ayLm 134 (136)
.|.|-|++++++.+.
T Consensus 12 ~GLgSSaa~~~a~~~ 26 (67)
T PF00288_consen 12 SGLGSSAALAVALAA 26 (67)
T ss_dssp SSSSHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHH
Confidence 589999999888763
No 336
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=24.25 E-value=81 Score=21.84 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=11.9
Q ss_pred hhhhcCCeEEEeeCCCCCCCc
Q psy7473 72 EWNKVGVEFLQLSTRDIFDTP 92 (136)
Q Consensus 72 ~~~~~~i~~~~~p~~D~~~~~ 92 (136)
.....|+.++|+.+.|..-.|
T Consensus 20 ~l~~~g~d~lHiDiMDg~fvp 40 (201)
T PF00834_consen 20 RLEEAGADWLHIDIMDGHFVP 40 (201)
T ss_dssp HHHHTT-SEEEEEEEBSSSSS
T ss_pred HHHHcCCCEEEEeecccccCC
Confidence 344566777777777755333
No 337
>KOG3153|consensus
Probab=24.24 E-value=2.2e+02 Score=20.43 Aligned_cols=46 Identities=22% Similarity=0.273 Sum_probs=30.9
Q ss_pred hhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHHHHcC----CeEEEEcCCCCCh
Q psy7473 72 EWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTG----GTVYVHCKAGRTR 124 (136)
Q Consensus 72 ~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~~----~~VlVHC~~G~~R 124 (136)
.+...|.+.++-|-.|.. +|.++++.|..+..+. ..|+|-|.-| ||
T Consensus 89 yy~~~g~~vV~~pdQd~T------DftKcv~~i~~~~~~~e~~~~~Ivvlgglg-GR 138 (250)
T KOG3153|consen 89 YYKKNGVTVVHTPDQDTT------DFTKCVKWIQEHKTLTEWKFLNIVVLGGLG-GR 138 (250)
T ss_pred HHHhcCCeeEeCCCcCcc------hHHHHHHHHHHhcccccceeeeEEEecccC-cc
Confidence 455677888777666644 6888888888876432 2477777665 45
No 338
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=24.22 E-value=1.6e+02 Score=20.76 Aligned_cols=29 Identities=14% Similarity=0.365 Sum_probs=24.3
Q ss_pred chHHHHHHHHHHHHHHHHcCCeEEEEcCC
Q psy7473 92 PDQDKLERGVDFIQRISKTGGTVYVHCKA 120 (136)
Q Consensus 92 ~~~~~~~~~~~~i~~~~~~~~~VlVHC~~ 120 (136)
.....+.+++++|....+.++.||+-+..
T Consensus 43 ~T~~~L~~A~~~i~~~~~~~g~iLfV~tk 71 (225)
T TIGR01011 43 KTLQLLKEAYNFVKDVAANGGKILFVGTK 71 (225)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 35678999999999998899999987763
No 339
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=24.12 E-value=1.3e+02 Score=21.04 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHcCCeEEEEcCCCCChHHHHHHHHhh
Q psy7473 97 LERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLM 134 (136)
Q Consensus 97 ~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm 134 (136)
+..+.++|....+.|.++.+....+ +||..-.+..|.
T Consensus 16 ~~~a~e~i~~l~~~g~~~~~~tN~~-~~~~~~~~~~l~ 52 (236)
T TIGR01460 16 IPGAAEALNRLRAKGKPVVFLTNNS-SRSEEDYAEKLS 52 (236)
T ss_pred CcCHHHHHHHHHHCCCeEEEEECCC-CCCHHHHHHHHH
Confidence 5567788888888888888877655 566666665554
No 340
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=24.03 E-value=2.8e+02 Score=19.89 Aligned_cols=78 Identities=9% Similarity=0.087 Sum_probs=46.6
Q ss_pred HHHhcCCCEEEEcccCccc---ccccChhhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHHHHc-CCeEEEEcCCC
Q psy7473 46 KLLEENVKGVVSMNEDYEL---YFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKT-GGTVYVHCKAG 121 (136)
Q Consensus 46 ~l~~~gi~~Vi~l~~~~~~---~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~-~~~VlVHC~~G 121 (136)
..++.|.+..+++...... .+..........|.. .+-+.|....-.++.+.+.++.+++.... +-++-+||+.-
T Consensus 122 ~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~--~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~ 199 (268)
T cd07940 122 YAKSHGLDVEFSAEDATRTDLDFLIEVVEAAIEAGAT--TINIPDTVGYLTPEEFGELIKKLKENVPNIKVPISVHCHND 199 (268)
T ss_pred HHHHcCCeEEEeeecCCCCCHHHHHHHHHHHHHcCCC--EEEECCCCCCCCHHHHHHHHHHHHHhCCCCceeEEEEecCC
Confidence 3556888777665433221 011111223345654 45678877677788889888888876531 25788999865
Q ss_pred CChH
Q psy7473 122 RTRS 125 (136)
Q Consensus 122 ~~RS 125 (136)
.|=+
T Consensus 200 ~GlA 203 (268)
T cd07940 200 LGLA 203 (268)
T ss_pred cchH
Confidence 5433
No 341
>PF04898 Glu_syn_central: Glutamate synthase central domain; InterPro: IPR006982 Glutamate synthase (GltS)1 is a key enzyme in the early stages of the assimilation of ammonia in bacteria, yeasts, and plants. In bacteria, L-glutamate is involved in osmoregulation, is the precursor for other amino acids, and can be the precursor for haem biosynthesis. In plants, GltS is especially essential in the reassimilation of ammonia released by photorespiration. On the basis of the amino acid sequence and the nature of the electron donor, three different classes of GltS can de defined as follows: 1) ferredoxin-dependent GltS (Fd-GltS), 2) NADPH-dependent GltS (NADPH-GltS), and 3) NADH-dependent GltS (properties of the three classes have been reviewed extensively []). The enzyme is a complex iron-sulphur flavoprotein catalysing the reductive transfer of the amido nitrogen from L-glutamine to 2-oxoglutarate to form two molecules of L-glutamate via intramolecular channelling of ammonia from the amidotransferase domain to the FMN-binding domain. Reaction of amidotransferase domain: L-glutamine + H2O = L-glutamate + NH3 Reactions of FMN-binding domain: 2-oxoglutarate + NH3 = 2-iminoglutarate + H2O 2e + FMNox = FMNred 2-iminoglutarate + FMNred = L-glutamate + FMNox The central domain of glutamate synthase connects the N-terminal amidotransferase domain with the FMN-binding domain and has an alpha/beta overall topology [].; GO: 0015930 glutamate synthase activity, 0006807 nitrogen compound metabolic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=24.02 E-value=3e+02 Score=20.40 Aligned_cols=49 Identities=12% Similarity=0.182 Sum_probs=34.3
Q ss_pred cCCeEEEeeC----CCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCCCCChH
Q psy7473 76 VGVEFLQLST----RDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRS 125 (136)
Q Consensus 76 ~~i~~~~~p~----~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS 125 (136)
.++....++. .+. .....+.++++++..+++.+.|..++|=+-.+.++.
T Consensus 117 ~~~~~~~l~~~f~~~~~-~~~L~~aL~~l~~ea~~Av~~G~~ilILsDr~~~~~ 169 (287)
T PF04898_consen 117 PGFKAATLDATFPAEGG-DEGLEEALDRLCEEAEAAVREGANILILSDRNASPD 169 (287)
T ss_dssp CCCCEEEEESEEESTTS-TTCHHHHHHHHHHHHHHHHHCT-SEEEEESTC-CTT
T ss_pred cCCCccEEEEEEECCcC-hhHHHHHHHHHHHHHHHHHHcCCcEEEECCCCCCcC
Confidence 4555544443 322 367888899999999999999999999997776543
No 342
>KOG0207|consensus
Probab=23.89 E-value=3.5e+02 Score=23.67 Aligned_cols=29 Identities=21% Similarity=0.267 Sum_probs=21.9
Q ss_pred HHHHHHHHcCCeEEEEcCCCCChHHHHHHH
Q psy7473 102 DFIQRISKTGGTVYVHCKAGRTRSATLVGC 131 (136)
Q Consensus 102 ~~i~~~~~~~~~VlVHC~~G~~RS~~v~~a 131 (136)
++|++..+ +++.+..|..|++=|++++.|
T Consensus 776 ~~Ik~lq~-~~~~VaMVGDGINDaPALA~A 804 (951)
T KOG0207|consen 776 EKIKEIQK-NGGPVAMVGDGINDAPALAQA 804 (951)
T ss_pred HHHHHHHh-cCCcEEEEeCCCCccHHHHhh
Confidence 44545444 457788899999999999876
No 343
>PLN02282 phosphoglycerate kinase
Probab=23.84 E-value=1.7e+02 Score=22.75 Aligned_cols=43 Identities=21% Similarity=0.332 Sum_probs=30.5
Q ss_pred EEeeCCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCCCCC
Q psy7473 81 LQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRT 123 (136)
Q Consensus 81 ~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~ 123 (136)
+++|+.|.+.-.....+...+.-|+...++|.+|.+-.+.|+-
T Consensus 26 ~NvPi~~~g~I~dd~RI~a~lpTI~~l~~~gakvVl~SHlGRP 68 (401)
T PLN02282 26 LNVPLDDNSNITDDTRIRAAVPTIKYLMGHGARVILCSHLGRP 68 (401)
T ss_pred cCCccCCCCcccCcHHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 3457755333445567888888899888888888887777743
No 344
>PF09289 FOLN: Follistatin/Osteonectin-like EGF domain; InterPro: IPR015369 This domain is predominantly found in osteonectin and follistatin. They adopt an EGF-like structure [, ]. Follistatin is involved in diverse activities from embryonic development to cell secretion. ; GO: 0005515 protein binding; PDB: 1LR7_A 1LR8_A 1LR9_A 2ARP_F 3B4V_H 2KCX_A 3SEK_C 2P6A_D 3HH2_C 2B0U_D ....
Probab=23.84 E-value=22 Score=15.47 Aligned_cols=7 Identities=57% Similarity=1.402 Sum_probs=2.6
Q ss_pred EEcCCCC
Q psy7473 116 VHCKAGR 122 (136)
Q Consensus 116 VHC~~G~ 122 (136)
+||..|+
T Consensus 4 ~~Ck~GK 10 (22)
T PF09289_consen 4 FHCKRGK 10 (22)
T ss_dssp ---BTTE
T ss_pred cccCCCC
Confidence 5787764
No 345
>TIGR00753 undec_PP_bacA undecaprenyl-diphosphatase UppP. This is a family of small, highly hydrophobic proteins. Overexpression of this protein in Escherichia coli is associated with bacitracin resistance, and the protein was originally proposed to be an undecaprenol kinase and called bacA. It is now known to be an undecaprenyl pyrophosphate phosphatase (EC 3.6.1.27) and is renamed UppP.
Probab=23.78 E-value=52 Score=23.77 Aligned_cols=15 Identities=27% Similarity=0.381 Sum_probs=11.2
Q ss_pred CCCChHHHHHHHHhh
Q psy7473 120 AGRTRSATLVGCYLM 134 (136)
Q Consensus 120 ~G~~RS~~v~~ayLm 134 (136)
-|+||||+-.++-|+
T Consensus 160 PGiSRSG~TI~a~l~ 174 (255)
T TIGR00753 160 PGVSRSGSTISGGLF 174 (255)
T ss_pred cCCCCchHHHHHHHH
Confidence 499999877766554
No 346
>PRK03906 mannonate dehydratase; Provisional
Probab=23.66 E-value=3.5e+02 Score=20.93 Aligned_cols=80 Identities=13% Similarity=0.183 Sum_probs=48.9
Q ss_pred EEeCCCCcccHHHHHhcCCCEEEEcccCccc--ccc-----cChhhhhhcCCeEEE---eeCCCC---CCCchHHHHHHH
Q psy7473 34 ILGALPFKRLTNKLLEENVKGVVSMNEDYEL--YFA-----NGREEWNKVGVEFLQ---LSTRDI---FDTPDQDKLERG 100 (136)
Q Consensus 34 ~~g~~~~~~~~~~l~~~gi~~Vi~l~~~~~~--~~~-----~~~~~~~~~~i~~~~---~p~~D~---~~~~~~~~~~~~ 100 (136)
|.|. ........+++.|++.||.--...+. .|+ ...+..+..|+++-- +|+.+. ..+.-.++++..
T Consensus 7 w~g~-~d~~~l~~~rQ~G~~~iv~~l~~~~~g~~W~~~~i~~~~~~ie~~Gl~~~vvEs~pv~~~Ik~g~~~rd~~ie~y 85 (385)
T PRK03906 7 WFGP-NDPVTLEDIRQPGATGIVTALHDIPVGEVWPVEEILARKAEIEAAGLEWSVVESVPVHEDIKTGTPNRDRYIENY 85 (385)
T ss_pred EeCC-CCcchHHHHhcCCCCceeecCCCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCCccHHHHcCCCCHHHHHHHH
Confidence 4555 45666788889999999976543211 111 123455668887754 344432 134556778888
Q ss_pred HHHHHHHHHcCCeE
Q psy7473 101 VDFIQRISKTGGTV 114 (136)
Q Consensus 101 ~~~i~~~~~~~~~V 114 (136)
.+.|+..-..|=+|
T Consensus 86 ~~sirnlg~~GI~~ 99 (385)
T PRK03906 86 KQTLRNLAAAGIKV 99 (385)
T ss_pred HHHHHHHHhcCCcE
Confidence 88888876655443
No 347
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=23.63 E-value=2.6e+02 Score=23.03 Aligned_cols=44 Identities=20% Similarity=0.274 Sum_probs=30.1
Q ss_pred hhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCCC
Q psy7473 74 NKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAG 121 (136)
Q Consensus 74 ~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G 121 (136)
...|.. .+-+.|...--.+..+.+.++.+.+.. +-++-+||+.-
T Consensus 165 ~~~Gad--~i~i~Dt~G~l~P~~~~~lv~~lk~~~--~~pi~~H~Hnt 208 (593)
T PRK14040 165 EDMGVD--SLCIKDMAGLLKPYAAYELVSRIKKRV--DVPLHLHCHAT 208 (593)
T ss_pred HHcCCC--EEEECCCCCCcCHHHHHHHHHHHHHhc--CCeEEEEECCC
Confidence 345655 445677665666777888888887665 46888998753
No 348
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=23.62 E-value=95 Score=23.48 Aligned_cols=20 Identities=50% Similarity=0.707 Sum_probs=15.0
Q ss_pred HcCCeEEEEcCCCCChHHHHH
Q psy7473 109 KTGGTVYVHCKAGRTRSATLV 129 (136)
Q Consensus 109 ~~~~~VlVHC~~G~~RS~~v~ 129 (136)
..+.+++++|..| .||...+
T Consensus 312 ~~~~~IvvyC~~G-~rS~~Aa 331 (355)
T PRK05597 312 SAGDEVVVYCAAG-VRSAQAV 331 (355)
T ss_pred CCCCeEEEEcCCC-HHHHHHH
Confidence 4567999999998 4875543
No 349
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=23.62 E-value=2.5e+02 Score=19.24 Aligned_cols=22 Identities=27% Similarity=0.296 Sum_probs=17.3
Q ss_pred HcCCeEEEEcCCCCChHHHHHH
Q psy7473 109 KTGGTVYVHCKAGRTRSATLVG 130 (136)
Q Consensus 109 ~~~~~VlVHC~~G~~RS~~v~~ 130 (136)
..+.+++++-..|.|.|....+
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~a 61 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQA 61 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHH
Confidence 3457899999999999965544
No 350
>PRK14017 galactonate dehydratase; Provisional
Probab=23.61 E-value=1.2e+02 Score=23.03 Aligned_cols=31 Identities=10% Similarity=0.038 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHcCCeEEEEcCC-CCChHHH
Q psy7473 97 LERGVDFIQRISKTGGTVYVHCKA-GRTRSAT 127 (136)
Q Consensus 97 ~~~~~~~i~~~~~~~~~VlVHC~~-G~~RS~~ 127 (136)
+.++.+..+.+...|-++.+||.. +++.++.
T Consensus 265 it~~~~ia~~A~~~gi~~~~h~~~~~i~~aa~ 296 (382)
T PRK14017 265 ITECRKIAAMAEAYDVALAPHCPLGPIALAAC 296 (382)
T ss_pred HHHHHHHHHHHHHcCCeEeecCCCCHHHHHHH
Confidence 455555555566788899999963 3444433
No 351
>PF14417 MEDS: MEDS: MEthanogen/methylotroph, DcmR Sensory domain
Probab=23.57 E-value=1.7e+02 Score=19.78 Aligned_cols=29 Identities=21% Similarity=0.186 Sum_probs=24.6
Q ss_pred chHHHHHHHHHHHHHHHHcCCeEEEEcCC
Q psy7473 92 PDQDKLERGVDFIQRISKTGGTVYVHCKA 120 (136)
Q Consensus 92 ~~~~~~~~~~~~i~~~~~~~~~VlVHC~~ 120 (136)
...+.++.++.||.+.++.|.+|++=+..
T Consensus 28 ~~~e~~~~~~~Fi~~GL~~ge~~l~v~~~ 56 (191)
T PF14417_consen 28 DEEELLEVLVPFIREGLARGERCLYVAPD 56 (191)
T ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 34578899999999999999999987763
No 352
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=23.54 E-value=3.6e+02 Score=21.02 Aligned_cols=81 Identities=9% Similarity=0.066 Sum_probs=48.7
Q ss_pred EEeCCCCcccHHHHHhcCCCEEEEcccCccc--c-----cccChhhhhhcCCeEEE---eeCCCC---CCCchHHHHHHH
Q psy7473 34 ILGALPFKRLTNKLLEENVKGVVSMNEDYEL--Y-----FANGREEWNKVGVEFLQ---LSTRDI---FDTPDQDKLERG 100 (136)
Q Consensus 34 ~~g~~~~~~~~~~l~~~gi~~Vi~l~~~~~~--~-----~~~~~~~~~~~~i~~~~---~p~~D~---~~~~~~~~~~~~ 100 (136)
|.|. ...-..+.+++.|++.||.-....+. - +....+..+..|+++-- +|+.+. ..+.-.++++..
T Consensus 7 w~gp-~d~v~l~~irQ~G~~giV~al~~~p~gevW~~~~i~~~k~~ie~~GL~~~vvEs~pv~e~Ik~g~~~rd~~Ieny 85 (394)
T TIGR00695 7 WYGP-NDPVSLEDVRQAGATGIVTALHHIPNGEVWEKEEIRKRKEYIESAGLHWSVVESVPVHEAIKTGTGNYGRWIENY 85 (394)
T ss_pred eeCC-CCcchHHHHhhcCCcceeecCCCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCCccHHHHcCCCcHHHHHHHH
Confidence 4555 45556788888999999976532211 1 11123455668887644 344432 134556778888
Q ss_pred HHHHHHHHHcCCeEE
Q psy7473 101 VDFIQRISKTGGTVY 115 (136)
Q Consensus 101 ~~~i~~~~~~~~~Vl 115 (136)
.+.|+..-+.|=+|+
T Consensus 86 k~~irNla~~GI~vi 100 (394)
T TIGR00695 86 KQTLRNLAQCGIKTV 100 (394)
T ss_pred HHHHHHHHHcCCCEE
Confidence 888887777664443
No 353
>CHL00067 rps2 ribosomal protein S2
Probab=23.35 E-value=1.7e+02 Score=20.74 Aligned_cols=29 Identities=10% Similarity=0.117 Sum_probs=24.4
Q ss_pred chHHHHHHHHHHHHHHHHcCCeEEEEcCC
Q psy7473 92 PDQDKLERGVDFIQRISKTGGTVYVHCKA 120 (136)
Q Consensus 92 ~~~~~~~~~~~~i~~~~~~~~~VlVHC~~ 120 (136)
.....+.+++.++.+..+.++.||+-+..
T Consensus 49 ~T~~~L~~A~~~i~~i~~~~g~ILfV~t~ 77 (230)
T CHL00067 49 QTARFLSEACDLVFDAASKGKKFLFVGTK 77 (230)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEeCc
Confidence 34567899999999998889999998865
No 354
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=23.25 E-value=1.6e+02 Score=22.17 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=24.6
Q ss_pred chHHHHHHHHHHHHHHHHcCCeEEEEcCC
Q psy7473 92 PDQDKLERGVDFIQRISKTGGTVYVHCKA 120 (136)
Q Consensus 92 ~~~~~~~~~~~~i~~~~~~~~~VlVHC~~ 120 (136)
-....+.++++||.+...+|+.||+-++.
T Consensus 40 kT~~~L~~A~~~i~~~~~~gg~iLfVgTk 68 (326)
T PRK12311 40 QTVPLLHRALQAVSDTVAKGGRVLFVGTK 68 (326)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEEeCc
Confidence 44578999999999999999999998864
No 355
>PF01715 IPPT: IPP transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) [].; GO: 0005524 ATP binding, 0008033 tRNA processing; PDB: 2ZXU_A 3FOZ_A 2ZM5_B 3D3Q_A 3EXA_B 2QGN_A 3A8T_A 3EPK_B 3EPH_A 3EPJ_A ....
Probab=23.21 E-value=1.8e+02 Score=20.87 Aligned_cols=39 Identities=18% Similarity=0.124 Sum_probs=22.2
Q ss_pred hhcCCeEEEeeCCCCCCCc-hHHHHHHHHHHHHHHHHcCC
Q psy7473 74 NKVGVEFLQLSTRDIFDTP-DQDKLERGVDFIQRISKTGG 112 (136)
Q Consensus 74 ~~~~i~~~~~p~~D~~~~~-~~~~~~~~~~~i~~~~~~~~ 112 (136)
+..++.++-+.+.|-.+.= .....+++.+.|++..++|+
T Consensus 18 e~~~vpHhlid~~~p~e~ysv~~f~~~a~~~i~~i~~rgk 57 (253)
T PF01715_consen 18 ERAGVPHHLIDILDPDEEYSVGDFQRDAREAIEDILARGK 57 (253)
T ss_dssp HHTTS-EESSS-B-TTS---HHHHHHHHHHHHHHHHHTT-
T ss_pred HHcCCCEeeeeeecccCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 4568888877777754332 34456677777888777655
No 356
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=23.09 E-value=3.7e+02 Score=21.01 Aligned_cols=84 Identities=18% Similarity=0.179 Sum_probs=45.2
Q ss_pred HHHHhcCCCEEEEcccCcccccccCh-hhhhh--cCCeEEEee-CCCCCCCc------hHHHHHHHHHHHHHHH----Hc
Q psy7473 45 NKLLEENVKGVVSMNEDYELYFANGR-EEWNK--VGVEFLQLS-TRDIFDTP------DQDKLERGVDFIQRIS----KT 110 (136)
Q Consensus 45 ~~l~~~gi~~Vi~l~~~~~~~~~~~~-~~~~~--~~i~~~~~p-~~D~~~~~------~~~~~~~~~~~i~~~~----~~ 110 (136)
+.|+++||+.+|-+..+......... +...+ .++..+.+| ..|.+-.. .......+++.|++.. ..
T Consensus 106 ~~L~~~~Id~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgIPkTIDNDl~~td~t~Gf~TA~~~~~~ai~~l~~ta~s~ 185 (403)
T PRK06555 106 ERLAADGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPKTIDNDVVPIRQSLGAWTAAEQGARFFDNVINEHSAN 185 (403)
T ss_pred HHHHHcCCCEEEEECChhHHHHHHHHHHHHHHhCCCceEEEeeeeeeCCCCCccCCcCHHHHHHHHHHHHHHHHHHHHhc
Confidence 34888999999999988754111111 11122 378999998 34443121 1223444445554443 23
Q ss_pred CCeEEEEcCCCCChHHHHH
Q psy7473 111 GGTVYVHCKAGRTRSATLV 129 (136)
Q Consensus 111 ~~~VlVHC~~G~~RS~~v~ 129 (136)
.+.++|+=..|+ .+|-++
T Consensus 186 ~r~~~vvEvMGR-~aG~LA 203 (403)
T PRK06555 186 PRMLIIHEVMGR-NCGWLT 203 (403)
T ss_pred CCEEEEEEccCC-chHHHH
Confidence 455667555564 344443
No 357
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=23.06 E-value=3.1e+02 Score=20.09 Aligned_cols=51 Identities=10% Similarity=0.120 Sum_probs=30.4
Q ss_pred hcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCC--CCChHHHH
Q psy7473 75 KVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKA--GRTRSATL 128 (136)
Q Consensus 75 ~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~--G~~RS~~v 128 (136)
..|.. .+-+.|....-.+.++.+.++.+.+... +-++-+||+. |.+-+-++
T Consensus 166 ~~G~d--~i~l~DT~G~~~P~~v~~lv~~l~~~~~-~~~i~~H~Hn~~Gla~AN~l 218 (287)
T PRK05692 166 ALGCY--EISLGDTIGVGTPGQVRAVLEAVLAEFP-AERLAGHFHDTYGQALANIY 218 (287)
T ss_pred HcCCc--EEEeccccCccCHHHHHHHHHHHHHhCC-CCeEEEEecCCCCcHHHHHH
Confidence 45554 3456666555566777777777765542 2578889875 44443333
No 358
>PRK12554 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=22.97 E-value=55 Score=23.97 Aligned_cols=15 Identities=27% Similarity=0.335 Sum_probs=11.2
Q ss_pred CCCChHHHHHHHHhh
Q psy7473 120 AGRTRSATLVGCYLM 134 (136)
Q Consensus 120 ~G~~RS~~v~~ayLm 134 (136)
-|+||||+-.++-|+
T Consensus 166 PGiSRSG~TI~a~l~ 180 (276)
T PRK12554 166 PGVSRSGATIIAGLL 180 (276)
T ss_pred cCCCCchHHHHHHHH
Confidence 499999987666553
No 359
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=22.83 E-value=3.9e+02 Score=21.17 Aligned_cols=97 Identities=19% Similarity=0.141 Sum_probs=49.8
Q ss_pred CcEEEeCCCCcc----cHHHHHhcCCCEEEEcccCccccccc-ChhhhhhcC--CeEEEee-CCCCCCCc------hHHH
Q psy7473 31 ENIILGALPFKR----LTNKLLEENVKGVVSMNEDYELYFAN-GREEWNKVG--VEFLQLS-TRDIFDTP------DQDK 96 (136)
Q Consensus 31 ~~l~~g~~~~~~----~~~~l~~~gi~~Vi~l~~~~~~~~~~-~~~~~~~~~--i~~~~~p-~~D~~~~~------~~~~ 96 (136)
++-.+|+--... -.+.|+++||..++.+..+....-.. ..++.+..| +..+.+| ..|.+-+- ....
T Consensus 148 GGTiLGTsR~~~~~~~iv~~L~~~~I~~L~vIGGdgT~~gA~~l~ee~~~~g~~I~VIGIPKTIDNDi~~td~S~GFdTA 227 (443)
T PRK06830 148 GGTILGSSRGPQDPEEIVDTLERMNINILFVIGGDGTLRGASAIAEEIERRGLKISVIGIPKTIDNDINFIQKSFGFETA 227 (443)
T ss_pred CCccccCCCCchhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCcCcccCCCHHHH
Confidence 345555543322 23458889999999999887541111 112222234 8888888 33443111 1233
Q ss_pred HHHHHHHHHHHH----HcCCeEEEEcCCCCChHHHH
Q psy7473 97 LERGVDFIQRIS----KTGGTVYVHCKAGRTRSATL 128 (136)
Q Consensus 97 ~~~~~~~i~~~~----~~~~~VlVHC~~G~~RS~~v 128 (136)
++.+.+.|+.+. ...++|.|-=..|. .||-+
T Consensus 228 v~~a~~aI~~~~~eA~s~~~rv~iVEvMGR-~sG~l 262 (443)
T PRK06830 228 VEKATEAIRCAHVEANGAPNGIGLVKLMGR-HSGFI 262 (443)
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEEECCC-cccHH
Confidence 455555555443 22245655444453 34443
No 360
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=22.69 E-value=2.1e+02 Score=18.76 Aligned_cols=13 Identities=8% Similarity=-0.107 Sum_probs=9.0
Q ss_pred CeEEEEcCCCCChH
Q psy7473 112 GTVYVHCKAGRTRS 125 (136)
Q Consensus 112 ~~VlVHC~~G~~RS 125 (136)
..||| |..|+|=|
T Consensus 58 ~GIli-CGtGiG~s 70 (141)
T TIGR01118 58 LGIVI-DAYGAGSF 70 (141)
T ss_pred eEEEE-cCCCHhHh
Confidence 35555 99998744
No 361
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=22.64 E-value=1.2e+02 Score=22.96 Aligned_cols=31 Identities=13% Similarity=-0.042 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHcCCeEEEEcC---CCCChHHH
Q psy7473 97 LERGVDFIQRISKTGGTVYVHCK---AGRTRSAT 127 (136)
Q Consensus 97 ~~~~~~~i~~~~~~~~~VlVHC~---~G~~RS~~ 127 (136)
+.++.+..+.+...|-++.+||. .|++.+++
T Consensus 251 it~~~~ia~~A~~~gi~~~~h~~~~~s~i~~aa~ 284 (361)
T cd03322 251 ITPARKIADLASLYGVRTGWHGPTDLSPVGMAAA 284 (361)
T ss_pred HHHHHHHHHHHHHcCCeeeccCCCCcchHHHHHH
Confidence 45566666666778889999996 44555443
No 362
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=22.64 E-value=4.4e+02 Score=21.66 Aligned_cols=49 Identities=18% Similarity=0.191 Sum_probs=25.7
Q ss_pred hhhcCCeEEEeeCCCCCC----CchHHH---HHHHHHHHHHHHHcCC-eEEEEcCCC
Q psy7473 73 WNKVGVEFLQLSTRDIFD----TPDQDK---LERGVDFIQRISKTGG-TVYVHCKAG 121 (136)
Q Consensus 73 ~~~~~i~~~~~p~~D~~~----~~~~~~---~~~~~~~i~~~~~~~~-~VlVHC~~G 121 (136)
...+|.+..-+.+..-+. -...+. +.++++.|.+.....+ .++=||.+|
T Consensus 243 lv~qG~~VflIsW~nP~~~~r~~~ldDYv~~i~~Ald~V~~~tG~~~vnl~GyC~GG 299 (560)
T TIGR01839 243 CLKNQLQVFIISWRNPDKAHREWGLSTYVDALKEAVDAVRAITGSRDLNLLGACAGG 299 (560)
T ss_pred HHHcCCeEEEEeCCCCChhhcCCCHHHHHHHHHHHHHHHHHhcCCCCeeEEEECcch
Confidence 445788887777655331 112333 3444444444332222 566689877
No 363
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=22.44 E-value=1.5e+02 Score=21.49 Aligned_cols=28 Identities=21% Similarity=0.497 Sum_probs=23.8
Q ss_pred chHHHHHHHHHHHHHHHHcCCeEEEEcC
Q psy7473 92 PDQDKLERGVDFIQRISKTGGTVYVHCK 119 (136)
Q Consensus 92 ~~~~~~~~~~~~i~~~~~~~~~VlVHC~ 119 (136)
-..+.+..+.+++.+..++|+.||+.-+
T Consensus 45 kT~~~l~~A~~~v~~~~~~~g~ILfVgT 72 (252)
T COG0052 45 KTLERLREAYKFLRRIAANGGKILFVGT 72 (252)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEec
Confidence 4457899999999999999999998765
No 364
>KOG1208|consensus
Probab=22.26 E-value=1.2e+02 Score=22.59 Aligned_cols=72 Identities=10% Similarity=0.039 Sum_probs=34.9
Q ss_pred HHHHhcCCCEEEEcccCccc--ccccChhhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCCCC
Q psy7473 45 NKLLEENVKGVVSMNEDYEL--YFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGR 122 (136)
Q Consensus 45 ~~l~~~gi~~Vi~l~~~~~~--~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~ 122 (136)
..|...|.+.|+.++..... .............+.++.+++.| .+.+.++++.+.+. ...-.||| |.+|+
T Consensus 53 ~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLss------l~SV~~fa~~~~~~-~~~ldvLI-nNAGV 124 (314)
T KOG1208|consen 53 RELALRGAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSS------LKSVRKFAEEFKKK-EGPLDVLI-NNAGV 124 (314)
T ss_pred HHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC------HHHHHHHHHHHHhc-CCCccEEE-eCccc
Confidence 45888997777777765321 00000011112333444444443 24556666655532 22245777 46776
Q ss_pred Ch
Q psy7473 123 TR 124 (136)
Q Consensus 123 ~R 124 (136)
..
T Consensus 125 ~~ 126 (314)
T KOG1208|consen 125 MA 126 (314)
T ss_pred cc
Confidence 53
No 365
>cd06135 Orn DEDDh 3'-5' exonuclease domain of oligoribonuclease and similar proteins. Oligoribonuclease (Orn) is a DEDDh-type DnaQ-like 3'-5' exoribonuclease that is responsible for degrading small oligoribonucleotides to mononucleotides. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. Orn is essential for Escherichia coli survival. The human homolog, also called Sfn (small fragment nuclease), is able to hydrolyze short single-stranded RNA and DNA oligomers. It plays a role in cellular nucleotide recycling.
Probab=22.24 E-value=1.3e+02 Score=19.97 Aligned_cols=35 Identities=11% Similarity=0.135 Sum_probs=26.6
Q ss_pred CchHHHHHHHHHHHHHHHHcCCeEEEEcCCCCChH
Q psy7473 91 TPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRS 125 (136)
Q Consensus 91 ~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS 125 (136)
++..+.+.++.+|+....++++.+++|......++
T Consensus 73 ~~~~~vl~~~~~f~~~~~~~~~~~lvgh~~~FD~~ 107 (173)
T cd06135 73 VTLAQAEAELLEFIKKYVPKGKSPLAGNSVHQDRR 107 (173)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCceeecchhhCHH
Confidence 56677788888888876666678888877776665
No 366
>PF05562 WCOR413: Cold acclimation protein WCOR413; InterPro: IPR008892 This family consists of several WCOR413-like plant cold acclimation proteins.
Probab=22.18 E-value=1.8e+02 Score=20.00 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=18.0
Q ss_pred HcCCeEEEEcCCCCChH-----HHHHHHHhh
Q psy7473 109 KTGGTVYVHCKAGRTRS-----ATLVGCYLM 134 (136)
Q Consensus 109 ~~~~~VlVHC~~G~~RS-----~~v~~ayLm 134 (136)
+.+.....+...|.+++ +++++.|||
T Consensus 29 kl~~~a~~~~~~~~~t~~lqWias~aAi~Ll 59 (187)
T PF05562_consen 29 KLASHAICLGSLGFGTSFLQWIASIAAIYLL 59 (187)
T ss_pred hhhcceeeeccccccHHHHHHHHHHHHHHHH
Confidence 33444666677888877 577888887
No 367
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=22.10 E-value=1.7e+02 Score=16.72 Aligned_cols=32 Identities=19% Similarity=0.270 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEEcCCCCChHH
Q psy7473 95 DKLERGVDFIQRISKTGGTVYVHCKAGRTRSA 126 (136)
Q Consensus 95 ~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~ 126 (136)
++..+..++.....++|=.|+.+=..|.|+|.
T Consensus 27 eh~~ry~~~a~~L~~~G~~V~~~D~rGhG~S~ 58 (79)
T PF12146_consen 27 EHSGRYAHLAEFLAEQGYAVFAYDHRGHGRSE 58 (79)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCcCCCCC
Confidence 34444455555556677889999999999985
No 368
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=22.08 E-value=1.3e+02 Score=22.59 Aligned_cols=29 Identities=7% Similarity=0.014 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHcCCeEEEEcC-CCCChH
Q psy7473 97 LERGVDFIQRISKTGGTVYVHCK-AGRTRS 125 (136)
Q Consensus 97 ~~~~~~~i~~~~~~~~~VlVHC~-~G~~RS 125 (136)
+.++.+.++.+.+.|-++.+||. .|++.+
T Consensus 264 it~~~~~~~lA~~~gi~~~~h~~~s~i~~~ 293 (352)
T cd03325 264 ITELKKIAAMAEAYDVALAPHCPLGPIALA 293 (352)
T ss_pred HHHHHHHHHHHHHcCCcEeccCCCChHHHH
Confidence 45555556666677889999995 344433
No 369
>PF00216 Bac_DNA_binding: Bacterial DNA-binding protein; InterPro: IPR000119 Bacteria synthesise a set of small, usually basic proteins of about 90 residues that bind DNA and are known as histone-like proteins [, ]. Examples include the HU protein in Escherichia coli is a dimer of closely related alpha and beta chains and in other bacteria can be a dimer of identical chains. HU-type proteins have been found in a variety of eubacteria, cyanobacteria and archaebacteria, and are also encoded in the chloroplast genome of some algae []. The integration host factor (IHF), a dimer of closely related chains which seem to function in genetic recombination as well as in translational and transcriptional control [] is found in enterobacteria and viral proteins include the African Swine fever virus protein A104R (or LMW5-AR) []. The exact function of these proteins is not yet clear but they are capable of wrapping DNA and stabilising it from denaturation under extreme environmental conditions. The structure is known for one of these proteins []. The protein exists as a dimer and two "beta-arms" function as the non-specific binding site for bacterial DNA. ; GO: 0003677 DNA binding; PDB: 3C4I_B 2O97_A 1MUL_A 1P78_A 1P51_C 1P71_B 2HT0_A 1OWG_A 2IIF_A 1OUZ_A ....
Probab=22.05 E-value=1.5e+02 Score=17.06 Aligned_cols=27 Identities=22% Similarity=0.227 Sum_probs=20.5
Q ss_pred CchHHHHHHHHHHHHHHHHcCCeEEEE
Q psy7473 91 TPDQDKLERGVDFIQRISKTGGTVYVH 117 (136)
Q Consensus 91 ~~~~~~~~~~~~~i~~~~~~~~~VlVH 117 (136)
.+....++.+.+.|.+.+.+|+.|-++
T Consensus 19 ~~v~~vl~~~~~~i~~~L~~g~~V~l~ 45 (90)
T PF00216_consen 19 KDVEAVLDALFDVIKEALKEGESVKLP 45 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-EEEET
T ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEee
Confidence 345567888899999999999998664
No 370
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=22.02 E-value=3.2e+02 Score=21.70 Aligned_cols=68 Identities=7% Similarity=0.129 Sum_probs=38.9
Q ss_pred CEEEEcccCcccccccChhhhhhcCCeEEEeeCCCCCC-----C-----chHHHHHHHHHHHHHHH--HcCCeEEEEcCC
Q psy7473 53 KGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFD-----T-----PDQDKLERGVDFIQRIS--KTGGTVYVHCKA 120 (136)
Q Consensus 53 ~~Vi~l~~~~~~~~~~~~~~~~~~~i~~~~~p~~D~~~-----~-----~~~~~~~~~~~~i~~~~--~~~~~VlVHC~~ 120 (136)
+.|||+++..+..-..........|+.|+..|+..... + ...+.++++-.+++..- ..+.|...||..
T Consensus 95 ~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~~lm~GG~~~a~~~~~piL~~ia~~~~~~~~~~~~G~ 174 (470)
T PTZ00142 95 DIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGPSLMPGGNKEAYDHVKDILEKCSAKVGDSPCVTYVGP 174 (470)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCCEEEEeCCHHHHHHHHHHHHHHhhhcCCCCeEEEECC
Confidence 67888887643211112345567899999999987531 0 12334444444443332 245678899854
No 371
>PF10652 DUF2480: Protein of unknown function (DUF2480); InterPro: IPR018914 All the members of this family are uncharacterised proteins, but the environment in which they are found on the bacterial genome suggests a function as a glucose-6-phosphate isomerase (5.3.1.9 from EC). This could not, however, be confirmed.
Probab=21.98 E-value=1.2e+02 Score=20.43 Aligned_cols=42 Identities=7% Similarity=0.003 Sum_probs=25.9
Q ss_pred EEEeeCCCCCCCch---HHHHHHHHHHHHHHHHcCCeEEEEcCCC
Q psy7473 80 FLQLSTRDIFDTPD---QDKLERGVDFIQRISKTGGTVYVHCKAG 121 (136)
Q Consensus 80 ~~~~p~~D~~~~~~---~~~~~~~~~~i~~~~~~~~~VlVHC~~G 121 (136)
...+.+.|+--... +..|++.++-.+=..=+|+-|.+||+.-
T Consensus 28 r~~~Dik~~L~~GliLkEKdFR~~lk~~DWsqY~~~~Vai~CStD 72 (167)
T PF10652_consen 28 RVVFDIKDWLFEGLILKEKDFREFLKEHDWSQYQDKYVAIYCSTD 72 (167)
T ss_pred EEEEecHHHHhhhhhhhhHHHHHHHHhcCHHHhCCcEEEEEcccc
Confidence 34566666542222 3556666665554445688999999853
No 372
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=21.97 E-value=3.2e+02 Score=20.76 Aligned_cols=73 Identities=10% Similarity=0.265 Sum_probs=40.6
Q ss_pred cEEEeCCCCcccHHHHHhc---CCCEEEEcccCcccc----cccChhhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHH
Q psy7473 32 NIILGALPFKRLTNKLLEE---NVKGVVSMNEDYELY----FANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFI 104 (136)
Q Consensus 32 ~l~~g~~~~~~~~~~l~~~---gi~~Vi~l~~~~~~~----~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i 104 (136)
++++|.-....-.+.++++ |.+.++=++.+.... +....+..+..|+++..++ +....+..+.++++++.+
T Consensus 3 ~i~fG~g~~~~l~~~l~~~~~~g~kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~--~v~~~p~~~~v~~~~~~~ 80 (383)
T cd08186 3 TLYFGVGAIEKIGEILKDLKSKGISKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYN--KVTPNPTVDQVDEAAKLG 80 (383)
T ss_pred eEEECcCHHHHHHHHHHHhcccCCCEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeC--CCCCCCCHHHHHHHHHHH
Confidence 3556644333333455665 777777776543210 1112334456788776554 444467777788777776
Q ss_pred HH
Q psy7473 105 QR 106 (136)
Q Consensus 105 ~~ 106 (136)
++
T Consensus 81 ~~ 82 (383)
T cd08186 81 RE 82 (383)
T ss_pred HH
Confidence 55
No 373
>PF14538 Raptor_N: Raptor N-terminal CASPase like domain
Probab=21.91 E-value=1.4e+02 Score=19.77 Aligned_cols=33 Identities=27% Similarity=0.395 Sum_probs=19.9
Q ss_pred CchHHHHHHHHHHHHHHHHcCCeEEEEc-CCCCCh
Q psy7473 91 TPDQDKLERGVDFIQRISKTGGTVYVHC-KAGRTR 124 (136)
Q Consensus 91 ~~~~~~~~~~~~~i~~~~~~~~~VlVHC-~~G~~R 124 (136)
.|..+.+.+.+.-+++... +++||+|= ..|+-|
T Consensus 71 dpt~e~~~~~~~~~R~~a~-~~RvLFHYnGhGvP~ 104 (154)
T PF14538_consen 71 DPTVEDLKRLCQSLRRNAK-DERVLFHYNGHGVPR 104 (154)
T ss_pred CCCHHHHHHHHHHHHhhCC-CceEEEEECCCCCCC
Confidence 3455666666665555444 37888885 446655
No 374
>PRK13462 acid phosphatase; Provisional
Probab=21.89 E-value=2.2e+02 Score=19.48 Aligned_cols=35 Identities=11% Similarity=-0.004 Sum_probs=24.1
Q ss_pred CchHHHHHHHHHHHHHHHH--cCCeEEEEcCCCCChH
Q psy7473 91 TPDQDKLERGVDFIQRISK--TGGTVYVHCKAGRTRS 125 (136)
Q Consensus 91 ~~~~~~~~~~~~~i~~~~~--~~~~VlVHC~~G~~RS 125 (136)
+...+...++.+++++..+ .++.|+|=|.+|+-|+
T Consensus 117 ES~~~~~~Rv~~~l~~i~~~~~~~~vliVsHg~vir~ 153 (203)
T PRK13462 117 ESVAQVNERADRAVALALEHMESRDVVFVSHGHFSRA 153 (203)
T ss_pred ccHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHHHH
Confidence 3444555666677776553 3578999999998776
No 375
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=21.84 E-value=3.4e+02 Score=20.04 Aligned_cols=66 Identities=12% Similarity=0.108 Sum_probs=37.4
Q ss_pred ccHHHHHhcCCCEEEEcccCccccccc---C--------hhhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHHH
Q psy7473 42 RLTNKLLEENVKGVVSMNEDYELYFAN---G--------REEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRIS 108 (136)
Q Consensus 42 ~~~~~l~~~gi~~Vi~l~~~~~~~~~~---~--------~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~ 108 (136)
.+...|++.|.+.+|++.......+.. . .+.....++..+.+.++... ....+..+..++.|....
T Consensus 58 ~~i~~lk~~G~kViiS~GG~~g~~~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~-~~d~~~~~~~~~al~~Lq 134 (294)
T cd06543 58 SDIAALRAAGGDVIVSFGGASGTPLATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGA-LTDTAAIDRRAQALALLQ 134 (294)
T ss_pred HHHHHHHHcCCeEEEEecCCCCCccccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCc-cccchhHHHHHHHHHHHH
Confidence 345679999999999998754321111 1 12234467788888777644 222223344444444443
No 376
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=21.81 E-value=1.5e+02 Score=20.30 Aligned_cols=28 Identities=21% Similarity=0.232 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEEEEcCCCCC
Q psy7473 93 DQDKLERGVDFIQRISKTGGTVYVHCKAGRT 123 (136)
Q Consensus 93 ~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~ 123 (136)
..+.+.++++. +.+.+.+|.+||..+..
T Consensus 131 ~~~~~~~~~~~---a~~~~~~i~~H~~~~~~ 158 (275)
T cd01292 131 SDESLRRVLEE---ARKLGLPVVIHAGELPD 158 (275)
T ss_pred CcHHHHHHHHH---HHHcCCeEEEeeCCccc
Confidence 33444444443 44558899999987754
No 377
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=21.68 E-value=3.4e+02 Score=20.40 Aligned_cols=73 Identities=12% Similarity=0.227 Sum_probs=40.3
Q ss_pred cEEEeCCCCcccHHHHHhcCCCEEEEcccCcccc---cccChhhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHH
Q psy7473 32 NIILGALPFKRLTNKLLEENVKGVVSMNEDYELY---FANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQR 106 (136)
Q Consensus 32 ~l~~g~~~~~~~~~~l~~~gi~~Vi~l~~~~~~~---~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~ 106 (136)
+++.|.-....-.+.+++.|.+.++-++...-.. .....+.....++++..+. +....+..+.+.++++.+++
T Consensus 3 ~i~~G~g~l~~l~~~l~~~~~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~--~~~~~p~~~~v~~~~~~~~~ 78 (370)
T cd08551 3 RIIFGAGAIEKLGEEIKNLGGRKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFD--GVEPNPTLSNVDAAVAAYRE 78 (370)
T ss_pred eEEECcCHHHHHHHHHHHcCCCeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEEC--CCCCCCCHHHHHHHHHHHHh
Confidence 4566644334444567778888877666543211 1112233445677775443 33345667777777766644
No 378
>smart00274 FOLN Follistatin-N-terminal domain-like. Follistatin-N-terminal domain-like, EGF-like. Region distinct from the kazal-like sequence
Probab=21.65 E-value=62 Score=14.55 Aligned_cols=7 Identities=43% Similarity=1.070 Sum_probs=5.2
Q ss_pred EEcCCCC
Q psy7473 116 VHCKAGR 122 (136)
Q Consensus 116 VHC~~G~ 122 (136)
|||..|.
T Consensus 5 v~C~~G~ 11 (26)
T smart00274 5 VQCPFGK 11 (26)
T ss_pred EECCCCC
Confidence 6888774
No 379
>PRK14117 gpmA phosphoglyceromutase; Provisional
Probab=21.56 E-value=2.1e+02 Score=20.04 Aligned_cols=36 Identities=22% Similarity=0.298 Sum_probs=25.5
Q ss_pred CchHHHHHHHHHHHHHHH-H---cCCeEEEEcCCCCChHH
Q psy7473 91 TPDQDKLERGVDFIQRIS-K---TGGTVYVHCKAGRTRSA 126 (136)
Q Consensus 91 ~~~~~~~~~~~~~i~~~~-~---~~~~VlVHC~~G~~RS~ 126 (136)
+...+..+++..++++.. . .++.|+|=|.+|.-|+-
T Consensus 150 Es~~~~~~Rv~~~l~~~~~~~~~~~~~vlvVsHg~~ir~l 189 (230)
T PRK14117 150 ENLKVTLERALPFWEDKIAPALKDGKNVFVGAHGNSIRAL 189 (230)
T ss_pred CCHHHHHHHHHHHHHHHHHhhccCCCEEEEEeChHHHHHH
Confidence 445566777777777653 2 35789999999988763
No 380
>PRK14119 gpmA phosphoglyceromutase; Provisional
Probab=21.55 E-value=1.9e+02 Score=20.10 Aligned_cols=35 Identities=26% Similarity=0.299 Sum_probs=24.9
Q ss_pred CchHHHHHHHHHHHHHHHH----cCCeEEEEcCCCCChH
Q psy7473 91 TPDQDKLERGVDFIQRISK----TGGTVYVHCKAGRTRS 125 (136)
Q Consensus 91 ~~~~~~~~~~~~~i~~~~~----~~~~VlVHC~~G~~RS 125 (136)
+...+...++..++++... .++.|+|=|.+|+-|+
T Consensus 150 ES~~~~~~Rv~~~l~~~~~~~~~~~~~vlvVsHg~vir~ 188 (228)
T PRK14119 150 ESLKDTLVRVIPFWTDHISQYLLDGQTVLVSAHGNSIRA 188 (228)
T ss_pred CCHHHHHHHHHHHHHHHHHhhccCCCeEEEEeChHHHHH
Confidence 4445556777777776542 4678999999998876
No 381
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=21.40 E-value=2.2e+02 Score=18.65 Aligned_cols=13 Identities=8% Similarity=-0.107 Sum_probs=9.2
Q ss_pred CeEEEEcCCCCChH
Q psy7473 112 GTVYVHCKAGRTRS 125 (136)
Q Consensus 112 ~~VlVHC~~G~~RS 125 (136)
..||| |..|+|=|
T Consensus 58 ~GIli-CGTGiG~s 70 (142)
T PRK08621 58 LGIVI-DAYGAGSF 70 (142)
T ss_pred eEEEE-cCCChhhh
Confidence 45666 99998744
No 382
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=21.39 E-value=3e+02 Score=21.28 Aligned_cols=73 Identities=14% Similarity=0.201 Sum_probs=40.0
Q ss_pred cEEEeCCCCcccHHHHHhcCCCEEEEcccCcccc---cccChhhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHH
Q psy7473 32 NIILGALPFKRLTNKLLEENVKGVVSMNEDYELY---FANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQR 106 (136)
Q Consensus 32 ~l~~g~~~~~~~~~~l~~~gi~~Vi~l~~~~~~~---~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~ 106 (136)
.+++|.-....-.+.+++.|.+.++-++++.-.. .....+..+..|+++..+. +...+|..+.+.++++..++
T Consensus 3 ~i~fG~g~~~~l~~~l~~~g~~~vlivt~~~~~~~g~~~~v~~~L~~~gi~~~~f~--~v~~~p~~~~v~~~~~~~~~ 78 (414)
T cd08190 3 NIRFGPGVTAEVGMDLKNLGARRVCLVTDPNLAQLPPVKVVLDSLEAAGINFEVYD--DVRVEPTDESFKDAIAFAKK 78 (414)
T ss_pred eEEECcCHHHHHHHHHHHcCCCeEEEEECcchhhcchHHHHHHHHHHcCCcEEEeC--CCCCCcCHHHHHHHHHHHHh
Confidence 4556654333334567778888888777653211 1111233455678776543 33335666677776666554
No 383
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=21.38 E-value=64 Score=23.50 Aligned_cols=15 Identities=27% Similarity=0.428 Sum_probs=11.2
Q ss_pred CCCChHHHHHHHHhh
Q psy7473 120 AGRTRSATLVGCYLM 134 (136)
Q Consensus 120 ~G~~RS~~v~~ayLm 134 (136)
-|+||||+-..+-|+
T Consensus 164 PGiSRSG~TI~~~l~ 178 (268)
T PRK00281 164 PGTSRSGATISGGLL 178 (268)
T ss_pred CCCCccHHHHHHHHH
Confidence 499999887666554
No 384
>PRK05693 short chain dehydrogenase; Provisional
Probab=21.26 E-value=3e+02 Score=19.28 Aligned_cols=63 Identities=14% Similarity=0.143 Sum_probs=29.4
Q ss_pred HHHHhcCCCEEEEcccCcccccccChhhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCC
Q psy7473 45 NKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKA 120 (136)
Q Consensus 45 ~~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~ 120 (136)
+.|.+.|.+.++.-+.... .+.....++.++...+.| .+.++++++.+.+.. .+-.++|||.+
T Consensus 19 ~~l~~~G~~V~~~~r~~~~------~~~~~~~~~~~~~~Dl~~------~~~~~~~~~~~~~~~-~~id~vi~~ag 81 (274)
T PRK05693 19 DAFKAAGYEVWATARKAED------VEALAAAGFTAVQLDVND------GAALARLAEELEAEH-GGLDVLINNAG 81 (274)
T ss_pred HHHHHCCCEEEEEeCCHHH------HHHHHHCCCeEEEeeCCC------HHHHHHHHHHHHHhc-CCCCEEEECCC
Confidence 4466678765543333221 122223345544433333 234555554443321 12379999974
No 385
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=21.25 E-value=3.7e+02 Score=20.25 Aligned_cols=76 Identities=20% Similarity=0.159 Sum_probs=43.4
Q ss_pred cEEEeCCCCcccHHHHHhcCCCEEEEcccCccc--ccccChhhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHH
Q psy7473 32 NIILGALPFKRLTNKLLEENVKGVVSMNEDYEL--YFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRI 107 (136)
Q Consensus 32 ~l~~g~~~~~~~~~~l~~~gi~~Vi~l~~~~~~--~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~ 107 (136)
.+++|.-....-.+.+++.+.+.++-++.+.-. ......+.....|+++..+-+.+....+..+.+.++++.+.+.
T Consensus 11 ~v~~G~g~~~~l~~~l~~~~~~~~livtd~~~~~~~~~~v~~~L~~~gi~~~~~~~~~~e~~~~~~~v~~~~~~~~~~ 88 (358)
T PRK00002 11 PIIIGKGLLSELGELLAPLKGKKVAIVTDETVAPLYLEKLRASLEAAGFEVDVVVLPDGEQYKSLETLEKIYDALLEA 88 (358)
T ss_pred cEEEeCChHHHHHHHHHhcCCCeEEEEECCchHHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHc
Confidence 477776544444445666666676666654321 0111123344567777655566655567778888888777654
No 386
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=21.16 E-value=3.4e+02 Score=19.88 Aligned_cols=73 Identities=18% Similarity=0.047 Sum_probs=37.1
Q ss_pred HHHHhcCCCEEEEcccCcccccccChhhhhhcCCeEEEeeCCCCCCCch------HHHHHHHHHHHHHHHHcCCeEEEEc
Q psy7473 45 NKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPD------QDKLERGVDFIQRISKTGGTVYVHC 118 (136)
Q Consensus 45 ~~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~i~~~~~p~~D~~~~~~------~~~~~~~~~~i~~~~~~~~~VlVHC 118 (136)
..|.+.|....+-...... ........|++++.++......... ...+...+..+.+..++.++=+|||
T Consensus 23 ~~L~~~g~ev~vv~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ik~~~pDvv~~ 97 (357)
T PRK00726 23 EELKKRGWEVLYLGTARGM-----EARLVPKAGIEFHFIPSGGLRRKGSLANLKAPFKLLKGVLQARKILKRFKPDVVVG 97 (357)
T ss_pred HHHHhCCCEEEEEECCCch-----hhhccccCCCcEEEEeccCcCCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 3466677776554333211 0122233588888888654321222 1122333333444455557888999
Q ss_pred CCCC
Q psy7473 119 KAGR 122 (136)
Q Consensus 119 ~~G~ 122 (136)
..+.
T Consensus 98 ~~~~ 101 (357)
T PRK00726 98 FGGY 101 (357)
T ss_pred CCCc
Confidence 8643
No 387
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=21.14 E-value=71 Score=19.44 Aligned_cols=14 Identities=36% Similarity=0.657 Sum_probs=11.0
Q ss_pred HcCCeEEEEcCCCC
Q psy7473 109 KTGGTVYVHCKAGR 122 (136)
Q Consensus 109 ~~~~~VlVHC~~G~ 122 (136)
..+..+-|||.++-
T Consensus 10 ~~~~~L~vhC~S~d 23 (110)
T PF05938_consen 10 GPGKILTVHCKSKD 23 (110)
T ss_pred CCCCeEEEEeeCCC
Confidence 45778999998864
No 388
>KOG1468|consensus
Probab=21.11 E-value=1.2e+02 Score=22.51 Aligned_cols=23 Identities=35% Similarity=0.640 Sum_probs=13.6
Q ss_pred HHHHHHHHHHcCC--eEEEEcCCCC
Q psy7473 100 GVDFIQRISKTGG--TVYVHCKAGR 122 (136)
Q Consensus 100 ~~~~i~~~~~~~~--~VlVHC~~G~ 122 (136)
..+++.++.+..+ .||-||..|-
T Consensus 142 g~~~Llq~~~~~~kltVlThCNTGS 166 (354)
T KOG1468|consen 142 GAKELLQAVKDKGKLTVLTHCNTGS 166 (354)
T ss_pred HHHHHHHhcCCCCceEEEEeecCCc
Confidence 3344444443333 7899999873
No 389
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=21.09 E-value=2.3e+02 Score=19.88 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHcC-CeEEEEcCCC
Q psy7473 94 QDKLERGVDFIQRISKTG-GTVYVHCKAG 121 (136)
Q Consensus 94 ~~~~~~~~~~i~~~~~~~-~~VlVHC~~G 121 (136)
.+.+.++++.|....+.| ++|+||-.+|
T Consensus 14 ~~~~~~~~~~i~~l~~~g~~~vvV~sg~g 42 (239)
T cd04261 14 IERIKRVAERIKKRKKKGNQVVVVVSAMG 42 (239)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence 457888888888876655 5788888644
No 390
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=21.09 E-value=2.3e+02 Score=17.89 Aligned_cols=73 Identities=10% Similarity=0.042 Sum_probs=39.7
Q ss_pred HHHHhcCCCEEEEcccC--cccccccChhhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCCCC
Q psy7473 45 NKLLEENVKGVVSMNED--YELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGR 122 (136)
Q Consensus 45 ~~l~~~gi~~Vi~l~~~--~~~~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~ 122 (136)
..|.+.|-..|+-+... .+. ...........+.+...++ .| ....+.++++++.+.+. ...=.++|||.+..
T Consensus 18 ~~l~~~g~~~v~~~~r~~~~~~-~~~l~~~l~~~~~~~~~~~-~D---~~~~~~~~~~~~~~~~~-~~~ld~li~~ag~~ 91 (167)
T PF00106_consen 18 RALARRGARVVILTSRSEDSEG-AQELIQELKAPGAKITFIE-CD---LSDPESIRALIEEVIKR-FGPLDILINNAGIF 91 (167)
T ss_dssp HHHHHTTTEEEEEEESSCHHHH-HHHHHHHHHHTTSEEEEEE-SE---TTSHHHHHHHHHHHHHH-HSSESEEEEECSCT
T ss_pred HHHHhcCceEEEEeeecccccc-ccccccccccccccccccc-cc---ccccccccccccccccc-cccccccccccccc
Confidence 34566677676666655 111 1111223344566666666 33 22345677777777632 22347899998765
Q ss_pred C
Q psy7473 123 T 123 (136)
Q Consensus 123 ~ 123 (136)
.
T Consensus 92 ~ 92 (167)
T PF00106_consen 92 S 92 (167)
T ss_dssp T
T ss_pred c
Confidence 4
No 391
>TIGR00856 pyrC_dimer dihydroorotase, homodimeric type. This homodimeric form of dihydroorotase is less common in microbial genomes than a related dihydroorotase that appears in a complex with aspartyltranscarbamoylase or as a homologous domain in multifunctional proteins of pyrimidine biosynthesis in higher eukaryotes.
Probab=21.07 E-value=1.3e+02 Score=22.53 Aligned_cols=22 Identities=14% Similarity=0.241 Sum_probs=16.0
Q ss_pred HHHHHHHHHHcCCeEEEEcCCC
Q psy7473 100 GVDFIQRISKTGGTVYVHCKAG 121 (136)
Q Consensus 100 ~~~~i~~~~~~~~~VlVHC~~G 121 (136)
+.+.++.+.+.|.+|.|||...
T Consensus 117 l~~~~e~~~e~g~~v~vHaEd~ 138 (341)
T TIGR00856 117 IMPVLEAMEKIGLPLLLHGEVT 138 (341)
T ss_pred HHHHHHHHHHcCCeEEEeecCC
Confidence 3444555667789999999865
No 392
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=21.06 E-value=3.7e+02 Score=20.76 Aligned_cols=76 Identities=13% Similarity=0.273 Sum_probs=46.9
Q ss_pred cCcEEEeCCCCcccHHHHHhcCCCEEEEcccCccc---ccccChhhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHH
Q psy7473 30 DENIILGALPFKRLTNKLLEENVKGVVSMNEDYEL---YFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQR 106 (136)
Q Consensus 30 ~~~l~~g~~~~~~~~~~l~~~gi~~Vi~l~~~~~~---~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~ 106 (136)
.+.++.|.-....-.+..++.|+++++-++...-. ......+.....+++|..+. +...+|..+.+.+.++.+++
T Consensus 7 p~~i~fG~g~l~~l~~~~~~~g~~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~--~v~p~P~~~~v~~~~~~~~~ 84 (377)
T COG1454 7 PTEILFGRGSLKELGEEVKRLGAKRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFD--EVEPEPTIETVEAGAEVARE 84 (377)
T ss_pred CceEEecCChHHHHHHHHHhcCCCceEEEECCccccchhHHHHHHHHHhcCCeEEEec--CCCCCCCHHHHHHHHHHHHh
Confidence 34577776655555566667899999988887532 11112344556777776543 33346677777777776655
Q ss_pred H
Q psy7473 107 I 107 (136)
Q Consensus 107 ~ 107 (136)
.
T Consensus 85 ~ 85 (377)
T COG1454 85 F 85 (377)
T ss_pred c
Confidence 3
No 393
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=21.05 E-value=1.5e+02 Score=19.08 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHcCCeEEEEcC
Q psy7473 98 ERGVDFIQRISKTGGTVYVHCK 119 (136)
Q Consensus 98 ~~~~~~i~~~~~~~~~VlVHC~ 119 (136)
+++-+.++++.+.++|++|+|.
T Consensus 146 ~~l~~a~~~a~~~~~p~~i~v~ 167 (168)
T cd00568 146 EDLEAALAEALAAGGPALIEVK 167 (168)
T ss_pred HHHHHHHHHHHhCCCCEEEEEE
Confidence 3444555556677899999884
No 394
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=21.01 E-value=1.5e+02 Score=19.88 Aligned_cols=23 Identities=13% Similarity=0.124 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCC
Q psy7473 98 ERGVDFIQRISKTGGTVYVHCKA 120 (136)
Q Consensus 98 ~~~~~~i~~~~~~~~~VlVHC~~ 120 (136)
+++-+.++++.+.+++++|+|.-
T Consensus 151 ~el~~al~~a~~~~~p~liev~~ 173 (186)
T cd02015 151 EELEAALKEALASDGPVLLDVLV 173 (186)
T ss_pred HHHHHHHHHHHhCCCCEEEEEEe
Confidence 44455566666778999998864
No 395
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=20.93 E-value=3.3e+02 Score=19.63 Aligned_cols=80 Identities=10% Similarity=0.145 Sum_probs=46.3
Q ss_pred HHhcCCCEEEEcccCccc---ccccChhhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCC--C
Q psy7473 47 LLEENVKGVVSMNEDYEL---YFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKA--G 121 (136)
Q Consensus 47 l~~~gi~~Vi~l~~~~~~---~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~--G 121 (136)
.++.|++..+++..-... ......+.....|.. .+-+.|....-.+..+.+.++.+++... -++-+||+. |
T Consensus 121 a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~--~i~l~Dt~G~~~P~~v~~~~~~~~~~~~--~~i~~H~Hn~~G 196 (262)
T cd07948 121 VKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVN--RVGIADTVGIATPRQVYELVRTLRGVVS--CDIEFHGHNDTG 196 (262)
T ss_pred HHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCC--EEEECCcCCCCCHHHHHHHHHHHHHhcC--CeEEEEECCCCC
Confidence 456788877776422211 001111223345655 4567777667777888888888876543 678888864 5
Q ss_pred CChHHHHHH
Q psy7473 122 RTRSATLVG 130 (136)
Q Consensus 122 ~~RS~~v~~ 130 (136)
.+-+.++++
T Consensus 197 la~an~~~a 205 (262)
T cd07948 197 CAIANAYAA 205 (262)
T ss_pred hHHHHHHHH
Confidence 544444433
No 396
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=20.90 E-value=3.5e+02 Score=21.49 Aligned_cols=68 Identities=9% Similarity=0.021 Sum_probs=38.6
Q ss_pred CEEEEcccCcccccccChhhhhhcCCeEEEeeCCCCCC----------CchHHHHHHHHHHHHHHHH--cCCeEEEEcCC
Q psy7473 53 KGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFD----------TPDQDKLERGVDFIQRISK--TGGTVYVHCKA 120 (136)
Q Consensus 53 ~~Vi~l~~~~~~~~~~~~~~~~~~~i~~~~~p~~D~~~----------~~~~~~~~~~~~~i~~~~~--~~~~VlVHC~~ 120 (136)
+.|||+++................|+.|+..|+..... ....+.++++-..++..-. .|.+...||..
T Consensus 92 ~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~~im~GG~~~a~~~~~p~L~~ia~~~~~~~~~~~~G~ 171 (467)
T TIGR00873 92 DIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGPSIMPGGSAEAWPLVAPIFQKIAAKVDGEPCCTWIGP 171 (467)
T ss_pred CEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCCcCCCCCCHHHHHHHHHHHHHHhhhcCCCCceEEECC
Confidence 67888886543211111344566899999999987531 1223445555444444332 34567888854
No 397
>COG5329 Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
Probab=20.88 E-value=4e+02 Score=21.90 Aligned_cols=84 Identities=13% Similarity=0.154 Sum_probs=46.8
Q ss_pred HHHHh-cCCCEEEEcccCccc------ccccChhhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHHH---------
Q psy7473 45 NKLLE-ENVKGVVSMNEDYEL------YFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRIS--------- 108 (136)
Q Consensus 45 ~~l~~-~gi~~Vi~l~~~~~~------~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~--------- 108 (136)
..|.+ +|.-+||||-..... .+...........+.|+.+...-.......+....+...|.+.+
T Consensus 300 ~~L~~~YG~v~vvNLl~tK~~E~~L~~~ye~~l~~~~~~~i~~~~fdfh~e~~~~~~~~~~~Ll~~i~~~l~~~gy~~~d 379 (570)
T COG5329 300 DKLREKYGDVYVVNLLKTKGYEAPLLELYEKHLDLSKKPKIHYTEFDFHKETSQDGFDDVKKLLYLIEQDLLEFGYFAYD 379 (570)
T ss_pred HHHHHHcCCEEEEEcccCCcchhHHHHHHHHHHhhCCCCCceeEEEeehhcccccccccHHHHHHHHHHHHHhcCceecc
Confidence 44555 999999999876542 00001111123455566655544433333344455555555542
Q ss_pred --------HcCCeEEEEcCCCCChHHHH
Q psy7473 109 --------KTGGTVYVHCKAGRTRSATL 128 (136)
Q Consensus 109 --------~~~~~VlVHC~~G~~RS~~v 128 (136)
.+.|.+=+-|..-.+||-++
T Consensus 380 ~~~~~~~s~Q~GV~RtNClDCLDRTNvi 407 (570)
T COG5329 380 INEGKSISEQDGVFRTNCLDCLDRTNVI 407 (570)
T ss_pred ccCCceeeeecceEEecchhhcccchHH
Confidence 24566677888888888654
No 398
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=20.84 E-value=1.2e+02 Score=21.47 Aligned_cols=27 Identities=11% Similarity=0.188 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHc-CCeEEEEcCCCCChH
Q psy7473 99 RGVDFIQRISKT-GGTVYVHCKAGRTRS 125 (136)
Q Consensus 99 ~~~~~i~~~~~~-~~~VlVHC~~G~~RS 125 (136)
++.++|+.+.+. +.+|+|=+++|+.=+
T Consensus 27 ~~~e~i~~a~~~~~~~i~vs~SGGKDS~ 54 (241)
T PRK02090 27 SAQERLAWALENFGGRLALVSSFGAEDA 54 (241)
T ss_pred CHHHHHHHHHHHcCCCEEEEecCCHHHH
Confidence 566777777753 567888888888633
No 399
>PF10114 PocR: Sensory domain found in PocR; InterPro: IPR018771 This entry is thought to act as a sensory domain in histidine kinases catalysing the reaction: ATP + protein L-histidine = ADP + protein N- phospho-L-histidine.
Probab=20.58 E-value=1.1e+02 Score=20.10 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=15.8
Q ss_pred HHHHHHcCCeEEEEcCCCCC
Q psy7473 104 IQRISKTGGTVYVHCKAGRT 123 (136)
Q Consensus 104 i~~~~~~~~~VlVHC~~G~~ 123 (136)
..++.+.|++...+|.+|..
T Consensus 66 ~~~a~~~~~~~i~~C~~GL~ 85 (173)
T PF10114_consen 66 AEQAMKKGEPYIYRCHAGLV 85 (173)
T ss_pred HHHhhccCCCEEEEcCcCce
Confidence 34566778999999999964
No 400
>COG0126 Pgk 3-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=20.58 E-value=1.8e+02 Score=22.56 Aligned_cols=41 Identities=17% Similarity=0.329 Sum_probs=30.8
Q ss_pred EEeeCCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCCCC
Q psy7473 81 LQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGR 122 (136)
Q Consensus 81 ~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~ 122 (136)
++.|+.| +.-.+...+...+.-|+...++|.+|.+-.+.|+
T Consensus 23 ~NvP~~d-G~I~dd~RI~a~lpTIk~l~~~ga~Vvl~SHlGR 63 (395)
T COG0126 23 FNVPVDD-GKITDDTRIRAALPTIKYLLEKGAKVVLLSHLGR 63 (395)
T ss_pred cCCcccC-CeeCCcHHHHHhhHHHHHHHhCCCeEEEEecCCC
Confidence 4568888 4355566788888899998888877888777775
No 401
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=20.42 E-value=1.5e+02 Score=21.02 Aligned_cols=20 Identities=10% Similarity=0.268 Sum_probs=15.0
Q ss_pred hhhhhhcCCeEEEeeCCCCC
Q psy7473 70 REEWNKVGVEFLQLSTRDIF 89 (136)
Q Consensus 70 ~~~~~~~~i~~~~~p~~D~~ 89 (136)
.......|..++|+.+.|..
T Consensus 22 l~~~~~agad~iH~DVMDgh 41 (220)
T COG0036 22 LKALEAAGADLIHIDVMDGH 41 (220)
T ss_pred HHHHHHcCCCEEEEeccCCC
Confidence 34456678899999998865
No 402
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=20.41 E-value=1.5e+02 Score=25.42 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=21.7
Q ss_pred chHHHHHHHHHHHHHHHHcCCeEEE
Q psy7473 92 PDQDKLERGVDFIQRISKTGGTVYV 116 (136)
Q Consensus 92 ~~~~~~~~~~~~i~~~~~~~~~VlV 116 (136)
...+.+..+++.|.+....|+||||
T Consensus 410 t~~~K~~Aiv~~I~~~~~~gqPvLv 434 (822)
T COG0653 410 TEEEKFKAIVEDIKERHEKGQPVLV 434 (822)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEE
Confidence 3457789999999999999999998
No 403
>KOG1196|consensus
Probab=20.31 E-value=3.9e+02 Score=20.26 Aligned_cols=85 Identities=20% Similarity=0.241 Sum_probs=44.7
Q ss_pred cEEEeCCCCcccHHHHHhcCCCEEEEcccCcc-cccccChhhhhhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHHHHc
Q psy7473 32 NIILGALPFKRLTNKLLEENVKGVVSMNEDYE-LYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKT 110 (136)
Q Consensus 32 ~l~~g~~~~~~~~~~l~~~gi~~Vi~l~~~~~-~~~~~~~~~~~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~ 110 (136)
.+|+=+.........+.+++...-|-+|..-. ...+..+....-..+-+.++.+......+-.+.++++++++....++
T Consensus 225 DiYfeNVGG~~lDavl~nM~~~gri~~CG~ISqYN~~~~~~~~~l~~ii~Kr~~iqgflv~d~~d~~~k~ld~l~~~ike 304 (343)
T KOG1196|consen 225 DIYFENVGGKMLDAVLLNMNLHGRIAVCGMISQYNLENPEGLHNLSTIIYKRIRIQGFLVSDYLDKYPKFLDFLLPYIKE 304 (343)
T ss_pred eEEEeccCcHHHHHHHHhhhhccceEeeeeehhccccCCccccchhhheeeeEEeeeEEeechhhhhHHHHHHHHHHHhc
Confidence 46766665555555566655554444443211 11111111111123445555555544445556788999999999888
Q ss_pred CCeEEE
Q psy7473 111 GGTVYV 116 (136)
Q Consensus 111 ~~~VlV 116 (136)
|+-.++
T Consensus 305 gKI~y~ 310 (343)
T KOG1196|consen 305 GKITYV 310 (343)
T ss_pred CceEEe
Confidence 665554
No 404
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=20.12 E-value=3.8e+02 Score=20.04 Aligned_cols=41 Identities=20% Similarity=0.273 Sum_probs=28.3
Q ss_pred HHHHhcCCCEEEEcccCcccccccChhhhhhcCCeEEEee-CCCC
Q psy7473 45 NKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLS-TRDI 88 (136)
Q Consensus 45 ~~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~i~~~~~p-~~D~ 88 (136)
+.|++++|+.+|-+..+.... ......+.++..+.+| ..|.
T Consensus 86 ~~l~~~~Id~Li~IGGdgs~~---~a~~L~e~~i~vigiPkTIDN 127 (317)
T cd00763 86 EQLKKHGIDALVVIGGDGSYM---GAMRLTEHGFPCVGLPGTIDN 127 (317)
T ss_pred HHHHHcCCCEEEEECCchHHH---HHHHHHHcCCCEEEecccccC
Confidence 458889999999999886531 1223334589999998 4444
No 405
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=20.09 E-value=1.6e+02 Score=21.35 Aligned_cols=39 Identities=10% Similarity=0.166 Sum_probs=26.8
Q ss_pred hhcCCeEEEeeCCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCCC
Q psy7473 74 NKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAG 121 (136)
Q Consensus 74 ~~~~i~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G 121 (136)
...|+++......+ .+++.+.|.+.+++|.||+|.+..+
T Consensus 60 ~~lG~~~~~~~~~~---------~~~~~~~l~~~l~~g~pv~~~~D~~ 98 (317)
T PF14399_consen 60 ERLGIKYEWREFSS---------PDEAWEELKEALDAGRPVIVWVDMY 98 (317)
T ss_pred HHCCceEEEEecCC---------HHHHHHHHHHHHhCCCceEEEeccc
Confidence 44666665333332 4677788888899999999987543
No 406
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.08 E-value=3.4e+02 Score=19.39 Aligned_cols=77 Identities=8% Similarity=0.094 Sum_probs=42.2
Q ss_pred HHHHHhcCCCEEEEcccCcccccccChhhhhhcCCeEEEee---CCCCCCCchHHHHHHHHHHHHHHHHc-CCeEEEEcC
Q psy7473 44 TNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLS---TRDIFDTPDQDKLERGVDFIQRISKT-GGTVYVHCK 119 (136)
Q Consensus 44 ~~~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~i~~~~~p---~~D~~~~~~~~~~~~~~~~i~~~~~~-~~~VlVHC~ 119 (136)
.+.|+..|++.|.-++..-+.--....+.++.+|++...+. +.|+- +--...=....++-.+.... -..++|-|.
T Consensus 110 v~aL~al~a~ri~vlTPY~~evn~~e~ef~~~~Gfeiv~~~~Lgi~dn~-eigr~~P~~~y~lAk~~~~~~~DaiFiSCT 188 (238)
T COG3473 110 VEALNALGAQRISVLTPYIDEVNQREIEFLEANGFEIVDFKGLGITDNL-EIGRQEPWAVYRLAKEVFTPDADAIFISCT 188 (238)
T ss_pred HHHHHhhCcceEEEeccchhhhhhHHHHHHHhCCeEEEEeeccCCcccc-hhcccChHHHHHHHHHhcCCCCCeEEEEee
Confidence 34588889999988886543211123456778999887654 44432 10011112333444343322 247889997
Q ss_pred CC
Q psy7473 120 AG 121 (136)
Q Consensus 120 ~G 121 (136)
+=
T Consensus 189 nl 190 (238)
T COG3473 189 NL 190 (238)
T ss_pred cc
Confidence 53
No 407
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=20.01 E-value=1.1e+02 Score=15.28 Aligned_cols=19 Identities=26% Similarity=0.569 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHcCCeEEEE
Q psy7473 98 ERGVDFIQRISKTGGTVYVH 117 (136)
Q Consensus 98 ~~~~~~i~~~~~~~~~VlVH 117 (136)
+++.++|+.. ++..-++||
T Consensus 21 ~~L~~~i~~~-~p~~vilVH 39 (43)
T PF07521_consen 21 EELLEFIEQL-NPRKVILVH 39 (43)
T ss_dssp HHHHHHHHHH-CSSEEEEES
T ss_pred HHHHHHHHhc-CCCEEEEec
Confidence 4445555555 555677777
Done!