RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7473
(136 letters)
>gnl|CDD|214551 smart00195, DSPc, Dual specificity phosphatase, catalytic domain.
Length = 138
Score = 66.2 bits (162), Expect = 6e-15
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 8/108 (7%)
Query: 28 RIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRD 87
I ++ LG+ + N L + + + + N +N +L + D
Sbjct: 3 EILPHLYLGS--YSDALNLALLKKL------GITHVINVTNEVPNYNGSDFTYLGVPIDD 54
Query: 88 IFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLMK 135
+T V+FI+ GG V VHC+AG +RSATL+ YLMK
Sbjct: 55 NTETKISPYFPEAVEFIEDAESKGGKVLVHCQAGVSRSATLIIAYLMK 102
>gnl|CDD|216117 pfam00782, DSPc, Dual specificity phosphatase, catalytic domain.
Ser/Thr and Tyr protein phosphatases. The enzyme's
tertiary fold is highly similar to that of
tyrosine-specific phosphatases, except for a
"recognition" region.
Length = 131
Score = 64.6 bits (158), Expect = 2e-14
Identities = 25/66 (37%), Positives = 34/66 (51%)
Query: 70 REEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLV 129
G+ +L + D +T L V+FI + GG V VHC+AG +RSATL+
Sbjct: 30 PNSNLNSGILYLGIPVEDNHETNISKYLPEAVEFIDDAIQKGGKVLVHCQAGISRSATLI 89
Query: 130 GCYLMK 135
YLMK
Sbjct: 90 IAYLMK 95
>gnl|CDD|238073 cd00127, DSPc, Dual specificity phosphatases (DSP); Ser/Thr and Tyr
protein phosphatases. Structurally similar to
tyrosine-specific phosphatases but with a shallower
active site cleft and a distinctive active site
signature motif, HCxxGxxR. Characterized as VHR- or
Cdc25-like.
Length = 139
Score = 62.6 bits (153), Expect = 1e-13
Identities = 37/113 (32%), Positives = 48/113 (42%), Gaps = 16/113 (14%)
Query: 28 RIDENIILGALPFKRLTNKLLEENVKGV--VSMNEDYELYFANGREEWNKVGVEFLQLST 85
I + LG+ P L + + V V+ E F + +L +
Sbjct: 4 EITPGLYLGSYPAASDKELLKKLGITHVLNVAKEVPNENLFLSD--------FNYLYVP- 54
Query: 86 RDIFDTPDQDK---LERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLMK 135
I D P QD + VDFI + GG V VHC AG +RSATLV YLMK
Sbjct: 55 --ILDLPSQDISKYFDEAVDFIDDAREKGGKVLVHCLAGVSRSATLVIAYLMK 105
>gnl|CDD|225297 COG2453, CDC14, Predicted protein-tyrosine phosphatase [Signal
transduction mechanisms].
Length = 180
Score = 54.8 bits (132), Expect = 3e-10
Identities = 31/134 (23%), Positives = 50/134 (37%), Gaps = 18/134 (13%)
Query: 15 VFMEKVTSRRWYDR---IDENIILGALPFKRLTNKLLEENVKGVVSMN--------EDYE 63
+ I I G + + + E ++ ++S+ E
Sbjct: 1 LEHPAGNLPSADFEATAILSEIYPGEVSIRGVRPLGYELGIQTILSLINALVIEELELLG 60
Query: 64 LYFANGREEWNKVGVEFLQLSTRDIFD--TPDQDKLERGVDFIQRISKTGGTVYVHCKAG 121
+ EE + + V L I D PD + L++ VDFI+ G V VHC+ G
Sbjct: 61 ALYNVAIEENDGIQVLHLP-----ILDGTVPDLEDLDKIVDFIEEALSKGKKVVVHCQGG 115
Query: 122 RTRSATLVGCYLMK 135
RS T++ YLM
Sbjct: 116 IGRSGTVIAAYLML 129
>gnl|CDD|183473 PRK12361, PRK12361, hypothetical protein; Provisional.
Length = 547
Score = 38.1 bits (89), Expect = 6e-04
Identities = 38/148 (25%), Positives = 55/148 (37%), Gaps = 35/148 (23%)
Query: 4 RVTFYPSLF----YNVFMEKVTSRRWYDRIDENIILGALPFKRLTNKLLEENVKGVVSMN 59
R F P L YN + K S +IDEN+ LG F KL + ++
Sbjct: 69 RWVFIPFLLGTRLYNAWARKRDSVPAIQKIDENLYLGCRLFPADLEKLKSNKITAILD-- 126
Query: 60 EDYELYFANGREEWNKVGVEF--LQLSTRD---------IFD--TPDQDKLERGVDFIQR 106
V EF L S + I D P +L + +++I R
Sbjct: 127 ----------------VTAEFDGLDWSLTEEDIDYLNIPILDHSVPTLAQLNQAINWIHR 170
Query: 107 ISKTGGTVYVHCKAGRTRSATLVGCYLM 134
+ +V VHC GR RS ++ YL+
Sbjct: 171 QVRANKSVVVHCALGRGRSVLVLAAYLL 198
>gnl|CDD|225240 COG2365, COG2365, Protein tyrosine/serine phosphatase [Signal
transduction mechanisms].
Length = 249
Score = 32.8 bits (75), Expect = 0.029
Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 4/73 (5%)
Query: 63 ELYFANGREEWNKVGVEFLQLSTRDI-FDTPDQDKLERGVDFIQRISKTGGTVYVHCKAG 121
+ + W+K + S R ++L + + G V +HC AG
Sbjct: 90 VELYTDHLINWDKAA-IIMFESYRSFPTREDAAERLVELLQLL--ADAENGPVLIHCTAG 146
Query: 122 RTRSATLVGCYLM 134
+ R+ + Y
Sbjct: 147 KDRTGLVAALYRK 159
>gnl|CDD|214649 smart00404, PTPc_motif, Protein tyrosine phosphatase, catalytic
domain motif.
Length = 105
Score = 31.6 bits (72), Expect = 0.046
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 105 QRISKTGGTVYVHCKAGRTRSATLVGCYLM 134
S++ G V VHC AG R+ T V ++
Sbjct: 33 LNQSESSGPVVVHCSAGVGRTGTFVAIDIL 62
>gnl|CDD|214469 smart00012, PTPc_DSPc, Protein tyrosine phosphatase, catalytic
domain, undefined specificity. Protein tyrosine
phosphatases. Homologues detected by this profile and
not by those of "PTPc" or "DSPc" are predicted to be
protein phosphatases with a similar fold to DSPs and
PTPs, yet with unpredicted specificities.
Length = 105
Score = 31.6 bits (72), Expect = 0.046
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 105 QRISKTGGTVYVHCKAGRTRSATLVGCYLM 134
S++ G V VHC AG R+ T V ++
Sbjct: 33 LNQSESSGPVVVHCSAGVGRTGTFVAIDIL 62
>gnl|CDD|111998 pfam03162, Y_phosphatase2, Tyrosine phosphatase family. This
family is closely related to the pfam00102 and pfam00782
families.
Length = 150
Score = 31.2 bits (71), Expect = 0.100
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 84 STRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGC 131
+D F L R + + ++K V +HC G+ R+ ++GC
Sbjct: 66 GNKDPFVNIPSHLLRRALKLL--LNKDNYPVLIHCNRGKHRTGLVIGC 111
>gnl|CDD|225984 COG3453, COG3453, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 130
Score = 30.0 bits (68), Expect = 0.21
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 90 DTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVG 130
+ +E F + + + G V +C++G TRS L G
Sbjct: 69 GGITEADVE---AFQRALDEAEGPVLAYCRSG-TRSLNLYG 105
>gnl|CDD|113060 pfam04273, DUF442, Putative phosphatase (DUF442). Although this
domain is uncharacterized it seems likely that it
performs a phosphatase function.
Length = 110
Score = 29.8 bits (67), Expect = 0.21
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
Query: 91 TPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVG 130
T + F + ++ G V HC++G TR+ L
Sbjct: 71 TEADVE-----AFQRALAAAEGPVLAHCRSG-TRALNLYA 104
>gnl|CDD|240399 PTZ00393, PTZ00393, protein tyrosine phosphatase; Provisional.
Length = 241
Score = 29.1 bits (65), Expect = 0.70
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 90 DTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLMK 135
D P D + + + + K V VHC AG R+ L L++
Sbjct: 149 DAPTVDIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAPVLASIVLIE 194
>gnl|CDD|215717 pfam00102, Y_phosphatase, Protein-tyrosine phosphatase.
Length = 233
Score = 28.4 bits (64), Expect = 1.0
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 101 VDFIQRISK-----TGGTVYVHCKAGRTRSATLVG 130
+D I+++ K G + VHC AG R+ T +
Sbjct: 153 LDLIRKVRKSQADPRSGPIVVHCSAGVGRTGTFIA 187
>gnl|CDD|184997 PRK15037, PRK15037, D-mannonate oxidoreductase; Provisional.
Length = 486
Score = 28.5 bits (63), Expect = 1.2
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 66 FANGREEWNKVGVEFL 81
F NGR +W+KVG +F+
Sbjct: 266 FVNGRPDWDKVGAQFV 281
>gnl|CDD|233334 TIGR01263, 4HPPD, 4-hydroxyphenylpyruvate dioxygenase. This
protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and
phenylalanine catabolite, to homogentisate.
Homogentisate can undergo a further non-enzymatic
oxidation and polymerization into brown pigments that
protect some bacterial species from light. A similar
process occurs spontaneously in blood and is hemolytic
(see PMID:8000039). In some bacterial species, this
enzyme has been studied as a hemolysin [Energy
metabolism, Amino acids and amines].
Length = 353
Score = 27.6 bits (62), Expect = 2.0
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 71 EEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVY 115
E +N GV+ + L+T DI T + RGV+F+ T T Y
Sbjct: 232 EFYNGAGVQHIALNTDDIVRTVRALR-ARGVEFL----DTPDTYY 271
>gnl|CDD|172387 PRK13866, PRK13866, plasmid partitioning protein RepB; Provisional.
Length = 336
Score = 27.2 bits (60), Expect = 3.0
Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 15/97 (15%)
Query: 48 LEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLS------TRDIFDTP--------D 93
L V +V D EL A GRE ++ + F++ + FD D
Sbjct: 133 LRREVSAIVRNLTDRELVVAQGRENLDRADLSFIEKALFALRLEDAGFDRATIIAALSTD 192
Query: 94 QDKLERGVDFIQRISKTGGT-VYVHCKAGRTRSATLV 129
+ L R + + I T + KAGR+R L
Sbjct: 193 KADLSRYITVARGIPLNLATQIGPASKAGRSRWVALA 229
>gnl|CDD|185524 PTZ00242, PTZ00242, protein tyrosine phosphatase; Provisional.
Length = 166
Score = 26.9 bits (60), Expect = 3.2
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 106 RISKTGGTVYVHCKAGRTRSATLV 129
+ S T+ VHC AG R+ LV
Sbjct: 93 KQSTPPETIAVHCVAGLGRAPILV 116
>gnl|CDD|237437 PRK13582, thrH, phosphoserine phosphatase; Provisional.
Length = 205
Score = 26.8 bits (60), Expect = 3.2
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 8/34 (23%)
Query: 75 KVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRIS 108
K G+ L+ +TRDI PD D L + QR+
Sbjct: 23 KTGIPELRATTRDI---PDYDVLMK-----QRLD 48
>gnl|CDD|165179 PHA02836, PHA02836, putative transmembrane protein; Provisional.
Length = 153
Score = 26.8 bits (59), Expect = 3.2
Identities = 10/47 (21%), Positives = 22/47 (46%)
Query: 1 MFARVTFYPSLFYNVFMEKVTSRRWYDRIDENIILGALPFKRLTNKL 47
M R+ F P N+F++ + ++D+ N++ L K ++
Sbjct: 43 MVGRIGFVPVGIGNLFLKLMNLNTYFDKDSINLLTSNLSKKGFISRF 89
>gnl|CDD|163616 cd00840, MPP_Mre11_N, Mre11 nuclease, N-terminal metallophosphatase
domain. Mre11 (also known as SbcD in Escherichia coli)
is a subunit of the MRX protein complex. This complex
includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital
role in several nuclear processes including DNA
double-strand break repair, telomere length maintenance,
cell cycle checkpoint control, and meiotic
recombination, in eukaryotes. During double-strand
break repair, the MRX complex is required to hold the
two ends of a broken chromosome together. In vitro
studies show that Mre11 has 3'-5' exonuclease activity
on dsDNA templates and endonuclease activity on dsDNA
and ssDNA templates. In addition to the N-terminal
phosphatase domain, the eukaryotic MRE11 members of this
family have a C-terminal DNA binding domain (not
included in this alignment model). MRE11-like proteins
are found in prokaryotes and archaea was well as in
eukaryotes. Mre11 belongs to the metallophosphatase
(MPP) superfamily. MPPs are functionally diverse, but
all share a conserved domain with an active site
consisting of two metal ions (usually manganese, iron,
or zinc) coordinated with octahedral geometry by a cage
of histidine, aspartate, and asparagine residues. The
MPP superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 223
Score = 26.9 bits (60), Expect = 3.7
Identities = 9/32 (28%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 87 DIFDT--PDQDKLERGVDFIQRISKTGGTVYV 116
D+FD+ P + LE ++ ++R+ + G V++
Sbjct: 50 DLFDSNNPSPEALELLIEALRRLKEAGIPVFI 81
>gnl|CDD|227653 COG5350, COG5350, Predicted protein tyrosine phosphatase [General
function prediction only].
Length = 172
Score = 26.7 bits (59), Expect = 3.7
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 86 RDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRS 125
D + P + + +DF + + +HC AG +RS
Sbjct: 69 DDGWIAPGEAHVRAIIDFADEWPRFAPLL-IHCYAGISRS 107
>gnl|CDD|213390 cd12147, Cep3_C, C-terminal domain of the Cep3, a subunit of the
yeast centromere-binding factor 3. Cep3, together with
Skp1, Ctf13, and Ndc10, forms the yeast
centromere-binding factor 3 (CBF3) which initiates
kinetochore assembly by binding to the CDEIII locus of
centromeric DNA. Cep3 is comprised of two domains, the
N-terminal DNA-binding module, a Zn2Cys6-cluster,
C-terminal domain, which dimerizes and is believed to be
involved in the recruitment of the Skp1-Ctf1
heterodimer.
Length = 552
Score = 26.9 bits (60), Expect = 4.1
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 2 FARV-TFYPSLFYNVFMEKVTSRRWYDRIDENIILGALPFKRLTNKLL 48
+R+ +FY FYN+F E + ++E + F N LL
Sbjct: 413 LSRIASFYS--FYNIFDESAEVEQLVLDLNELLANLPDIFGPKLNNLL 458
>gnl|CDD|149275 pfam08125, Mannitol_dh_C, Mannitol dehydrogenase C-terminal
domain.
Length = 245
Score = 26.6 bits (59), Expect = 4.3
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 66 FANGREEWNKVGVEF 80
F GR W KVGV+F
Sbjct: 50 FVKGRPAWEKVGVQF 64
>gnl|CDD|193572 cd09848, M28_TfR, M28 Zn-peptidase Transferrin Receptor family.
Peptidase M28 family; Transferrin Receptor (TfR)
subfamily. TfRs are homodimeric type II transmembrane
proteins containing three distinct domains:
protease-like, apical or protease-associated (PA), and
helical domains. The protease-like domain is a large
extracellular portion (ectodomain). In TfR, it contains
a binding site for the transferrin molecule and has 28%
identity to membrane glutamate carboxypeptidase II
(mGCP-II or PSMA). The PA domain is inserted between
the first and second strands of the central beta sheet
in the protease-like domain. TfR1 is widely expressed,
and is a key player in the uptake of iron-loaded
transferrin (Tf) into cells. The TfR1 homodimer binds
two molecules of Tf and the complex is then
internalized. TfR1 may also participate in cell growth
and proliferation. TfR2 binds Tf but with a
significantly lower affinity than TfR1. It is expressed
chiefly in hepatocytes, hematopoietic cells, and
duodenal crypt cells; its expression overlaps with that
of hereditary hemochromatosis protein (HFE). TfR2 is
involved in iron homeostasis; in humans, mutations in
TfR2 are associated with a form of hemochromatosis
(HFE3). While related in sequence to peptidase M28
glutamate carboxypeptidase II (also called
prostate-specific membrane antigen or PSMA), TfR lacks
the metal ion coordination centers and protease activity
of that group.
Length = 285
Score = 26.6 bits (59), Expect = 4.7
Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 31 ENIILGALPFKR----LTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLS 84
+ +LG FK L LLE +K V S + Y+ R W VE L L
Sbjct: 154 DGAVLGDDSFKASASPLLYTLLESTMKQVKSPVHSGQSYYEFTRSSWWASIVEPLGLD 211
>gnl|CDD|225726 COG3185, COG3185, 4-hydroxyphenylpyruvate dioxygenase and related
hemolysins [Amino acid transport and metabolism /
General function prediction only].
Length = 363
Score = 26.5 bits (59), Expect = 4.8
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 77 GVEFLQLSTRDIFDTPDQDKLERGVDF 103
G++ + T DI+ T + ERGV F
Sbjct: 245 GIQHIAFGTDDIYATVAALR-ERGVKF 270
>gnl|CDD|219964 pfam08670, MEKHLA, MEKHLA domain. The MEKHLA domain shares
similarity with the PAS domain and is found in the 3'
end of plant HD-ZIP III homeobox genes, and bacterial
proteins.
Length = 148
Score = 26.0 bits (58), Expect = 5.5
Identities = 13/72 (18%), Positives = 21/72 (29%), Gaps = 13/72 (18%)
Query: 57 SMNEDYELYFAN--GREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVD------FIQ--- 105
S+ D +AN + VE L +R + + + + F
Sbjct: 48 SLKADPVFNYANQAALDLLETTWVELQDLPSRKTAEESGRKERCSELAKVMQQGFACLYS 107
Query: 106 --RISKTGGTVY 115
RIS G
Sbjct: 108 GVRISSMGRRFS 119
>gnl|CDD|176673 cd07250, HPPD_C_like, C-terminal domain of 4-hydroxyphenylpyruvate
dioxygenase (HppD) and hydroxymandelate Synthase (HmaS).
HppD and HmaS are non-heme iron-dependent dioxygenases,
which modify a common substrate, 4-hydroxyphenylpyruvate
(HPP), but yield different products. HPPD catalyzes the
second reaction in tyrosine catabolism, the conversion
of 4-hydroxyphenylpyruvate to homogentisate
(2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP
to 4-hydroxymandelate, a committed step in the formation
of hydroxyphenylglycerine, a structural component of
nonproteinogenic macrocyclic peptide antibiotics, such
as vancomycin. If the emphasis is on catalytic
chemistry, HPPD and HmaS are classified as members of a
large family of alpha-keto acid dependent mononuclear
non-heme iron oxygenases most of which require Fe(II),
molecular oxygen, and an alpha-keto acid (typically
alpha-ketoglutarate) to either oxygenate or oxidize a
third substrate. Both enzymes are exceptions in that
they require two, instead of three, substrates, do not
use alpha-ketoglutarate, and incorporate both atoms of
dioxygen into the aromatic product. Both HPPD and HmaS
exhibit duplicate beta barrel topology in their N- and
C-terminal domains which share sequence similarity,
suggestive of a gene duplication. Each protein has only
one catalytic site located in at the C-terminal domain.
This HPPD_C_like domain represents the C-terminal
domain.
Length = 191
Score = 26.0 bits (58), Expect = 5.7
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 77 GVEFLQLSTRDIFDTPDQDKLERGVDFIQ 105
GV+ + L+T DIF T + RGV+F+
Sbjct: 83 GVQHIALATDDIFATVAALR-ARGVEFLP 110
>gnl|CDD|238006 cd00047, PTPc, Protein tyrosine phosphatases (PTP) catalyze the
dephosphorylation of phosphotyrosine peptides; they
regulate phosphotyrosine levels in signal transduction
pathways. The depth of the active site cleft renders the
enzyme specific for phosphorylated Tyr (pTyr) residues,
instead of pSer or pThr. This family has a distinctive
active site signature motif, HCSAGxGRxG. Characterized
as either transmembrane, receptor-like or
non-transmembrane (soluble) PTPs. Receptor-like PTP
domains tend to occur in two copies in the cytoplasmic
region of the transmembrane proteins, only one copy may
be active.
Length = 231
Score = 26.0 bits (58), Expect = 6.4
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 105 QRISKTGGTVYVHCKAGRTRSATLVGCYLM 134
Q+ +G V VHC AG R+ T + ++
Sbjct: 161 QQQPGSGPIV-VHCSAGVGRTGTFIAIDIL 189
>gnl|CDD|184959 PRK14997, PRK14997, LysR family transcriptional regulator;
Provisional.
Length = 301
Score = 26.1 bits (57), Expect = 6.6
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 7/30 (23%)
Query: 98 ER-GVDFIQR------ISKTGGTVYVHCKA 120
ER GV IQR +++ G T Y HCKA
Sbjct: 42 ERLGVRLIQRTTRQFNVTEVGQTFYEHCKA 71
>gnl|CDD|238738 cd01461, vWA_interalpha_trypsin_inhibitor, vWA_interalpha trypsin
inhibitor (ITI): ITI is a glycoprotein composed of three
polypeptides- two heavy chains and one light chain
(bikunin). Bikunin confers the protease-inhibitor
function while the heavy chains are involved in
rendering stability to the extracellular matrix by
binding to hyaluronic acid. The heavy chains carry the
VWA domain with a conserved MIDAS motif. Although the
exact role of the VWA domains remains unknown, it has
been speculated to be involved in mediating
protein-protein interactions with the components of the
extracellular matrix.
Length = 171
Score = 25.6 bits (57), Expect = 6.9
Identities = 6/35 (17%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 79 EFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGT 113
+ S + T + + ++++ R+ GGT
Sbjct: 48 TVEEFSPSSVSATAEN--VAAAIEYVNRLQALGGT 80
>gnl|CDD|191182 pfam05064, Nsp1_C, Nsp1-like C-terminal region. This family
probably forms a coiled-coil. This important region of
Nsp1 is involved in binding Nup82.
Length = 117
Score = 25.3 bits (56), Expect = 7.1
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Query: 42 RLTNKLLEENVKGVVSMNEDYELYF---ANGREEWNKV----GVEFLQLSTRDIFDTPDQ 94
+L NK L+E + E+ E F A W+++ G + +L + + DQ
Sbjct: 15 QLKNKTLDELINKWTLELEEQEKEFEEQATQVNAWDRLLVENGEKISKLYSEVVKAEQDQ 74
Query: 95 DKLERGVDFIQR 106
+++++ +DFI+
Sbjct: 75 NRIDQELDFIES 86
>gnl|CDD|214550 smart00194, PTPc, Protein tyrosine phosphatase, catalytic domain.
Length = 259
Score = 26.1 bits (58), Expect = 7.2
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 102 DFIQRISKTG----GTVYVHCKAGRTRSATLVGCYLM 134
D I+ + K+ G + VHC AG R+ T + ++
Sbjct: 181 DLIRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDIL 217
>gnl|CDD|223324 COG0246, MtlD, Mannitol-1-phosphate/altronate dehydrogenases
[Carbohydrate transport and metabolism].
Length = 473
Score = 26.2 bits (58), Expect = 7.6
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 66 FANGREEWNKVGVEF 80
F GR KVGV+F
Sbjct: 253 FKAGRPALEKVGVQF 267
>gnl|CDD|162723 TIGR02137, HSK-PSP, phosphoserine phosphatase/homoserine
phosphotransferase bifunctional protein. This protein
is has been characterized as both a phosphoserine
phosphatase and a phosphoserine:homoserine
phosphotransferase. In Pseudomonas aeruginosa, where the
characterization was done, a second phosphoserine
phosphatase (SerB) and a second homoserine kinase (thrB)
are found, but in Fibrobacter succinogenes neither are
present. This enzyme is a member of the haloacid
dehalogenase (HAD) superfamily, specifically part of
subfamily IB by virtue of the presence of an alpha
helical domain in between motifs I and II of the HAD
domain. The closest homologs to this family are
monofunctional phosphoserine phosphatases (TIGR00338).
Length = 203
Score = 25.7 bits (56), Expect = 8.8
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Query: 75 KVGVEFLQLSTRDIFDTPDQDKLERG 100
K G++ L+ +TRDI PD D L +
Sbjct: 23 KTGIDALKATTRDI---PDYDVLMKQ 45
>gnl|CDD|218486 pfam05188, MutS_II, MutS domain II. This domain is found in
proteins of the MutS family (DNA mismatch repair
proteins) and is found associated with pfam00488,
pfam01624, pfam05192 and pfam05190. The MutS family of
proteins is named after the Salmonella typhimurium MutS
protein involved in mismatch repair; other members of
the family included the eukaryotic MSH 1,2,3, 4,5 and 6
proteins. These have various roles in DNA repair and
recombination. Human MSH has been implicated in
non-polyposis colorectal carcinoma (HNPCC) and is a
mismatch binding protein. This domain corresponds to
domain II in Thermus aquaticus MutS as characterized in,
and has similarity resembles RNAse-H-like domains (see
pfam00075).
Length = 133
Score = 25.4 bits (56), Expect = 9.3
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 74 NKVGVEFLQLSTRDIF--DTPDQDKLERGVDFIQRIS 108
N+ G+ FL LST + + D ++L + R+S
Sbjct: 12 NRYGLAFLDLSTGEFGVSEFEDFEELL---AELSRLS 45
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.140 0.425
Gapped
Lambda K H
0.267 0.0705 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,133,296
Number of extensions: 644870
Number of successful extensions: 557
Number of sequences better than 10.0: 1
Number of HSP's gapped: 557
Number of HSP's successfully gapped: 42
Length of query: 136
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 49
Effective length of database: 7,078,804
Effective search space: 346861396
Effective search space used: 346861396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (24.6 bits)