RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7473
(136 letters)
>3rgo_A Protein-tyrosine phosphatase mitochondrial 1; phosphatidylglycerol
phosphate (PGP) phosphatase, hydrolase; 1.93A {Mus
musculus} PDB: 3rgq_A*
Length = 157
Score = 139 bits (352), Expect = 1e-43
Identities = 57/113 (50%), Positives = 77/113 (68%), Gaps = 2/113 (1%)
Query: 25 WYDRIDENIILGALPFKRLTNKLL-EENVKGVVSMNEDYEL-YFANGREEWNKVGVEFLQ 82
WY RID ++LGALP K +T +L+ +ENV+GV++MNE+YE + N +EW K GVE L+
Sbjct: 1 WYHRIDHTVLLGALPLKNMTRRLVLDENVRGVITMNEEYETRFLCNTSKEWKKAGVEQLR 60
Query: 83 LSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLMK 135
LST D+ P L +GV F + G VYVHCKAGR+RSAT+V YL++
Sbjct: 61 LSTVDMTGVPTLANLHKGVQFALKYQALGQCVYVHCKAGRSRSATMVAAYLIQ 113
>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual
specicity protein phosphatase 23, DUS23_human, malate,
structural genomics, PSI; 1.93A {Homo sapiens}
Length = 151
Score = 97.1 bits (242), Expect = 5e-27
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 9/109 (8%)
Query: 29 IDENIILG-ALPFKRLTNKLL-EENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTR 86
+ + G ALP + L + V+ +VS+ E + + G+ +L
Sbjct: 12 VLPGRLAGLALPRLPAHYQFLLDLGVRHLVSLTERGPPH------SDSCPGLTLHRLRIP 65
Query: 87 DIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLMK 135
D F P D+++R V + + G V VHC G R+ T++ CYL+K
Sbjct: 66 D-FCPPAPDQIDRFVQIVDEANARGEAVGVHCALGFGRTGTMLACYLVK 113
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity
phosphatase, carbohydrate BIND hydrolase; 2.40A
{Arabidopsis thaliana}
Length = 294
Score = 90.6 bits (224), Expect = 3e-23
Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 8/119 (6%)
Query: 26 YDRIDENIILGALPFKRL-TNKLLEENVKGVVSMNEDYELYFAN------GREEWNKVGV 78
Y+ I ++I+G+ +KL + VK + + +D +L + +
Sbjct: 13 YNFIRPDLIVGSCLQTPEDVDKLRKIGVKTIFCLQQDPDLEYFGVDISSIQAYAKKYSDI 72
Query: 79 EFLQLSTRDIFDTPDQDKLERGVDFIQR-ISKTGGTVYVHCKAGRTRSATLVGCYLMKC 136
+ ++ RD + +L V + + + + GG YVH AG R+ + Y+
Sbjct: 73 QHIRCEIRDFDAFDLRMRLPAVVGTLYKAVKRNGGVTYVHSTAGMGRAPAVALTYMFWV 131
>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP
domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB:
2i6i_A 2i6m_A 3ro1_A* 2i6o_A* 2dxp_A* 2i6p_A*
Length = 161
Score = 84.5 bits (209), Expect = 5e-22
Identities = 24/113 (21%), Positives = 46/113 (40%), Gaps = 10/113 (8%)
Query: 29 IDENIILGALPF-KRLTNKLLEENVKGVVSMNEDYELYFANGR-----EEWNKVGVEFLQ 82
+ I LP+ + + +E VK V+ + ED+E+ + G K G++ L
Sbjct: 5 RRKTIGGSGLPYTENEILEWRKEGVKRVLVLPEDWEIEESWGDKDYYLSILKKNGLQPLH 64
Query: 83 LSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLMK 135
+ D P + + ++ + VHC G R+ T++ YL+
Sbjct: 65 IPIPD-GGVPSDSQF---LTIMKWLLSEKEGNLVHCVGGIGRTGTILASYLIL 113
>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich,
hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.1 PDB:
1fq1_A*
Length = 212
Score = 74.7 bits (183), Expect = 9e-18
Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 4/95 (4%)
Query: 45 NKLLEENVKGVVSMNEDYELY---FANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGV 101
+L ++ + EL N + + + G+ D TPD +
Sbjct: 65 EELKSCGIQDIFVFCTRGELSKYRVPNLLDLYQQCGIITHHHPIAD-GGTPDIASCCEIM 123
Query: 102 DFIQRISKTGGTVYVHCKAGRTRSATLVGCYLMKC 136
+ + K +H G RS + C L+
Sbjct: 124 EELTTCLKNYRKTLIHSYGGLGRSCLVAACLLLYL 158
>2e0t_A Dual specificity phosphatase 26; conserved hypothetical protein,
structural genomics, NPPSFA, project on protein
structural and functional analyses; 1.67A {Homo sapiens}
Length = 151
Score = 68.8 bits (169), Expect = 4e-16
Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 10/114 (8%)
Query: 27 DRIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTR 86
D + + LG +L + V++ + E +G+ +L +
Sbjct: 3 DEVWPGLYLGDQDMANNRRELRRLGITHVLNASHSRWRGTPEAYE---GLGIRYLGV--- 56
Query: 87 DIFDTPDQD---KLERGVDFIQR-ISKTGGTVYVHCKAGRTRSATLVGCYLMKC 136
+ D+P D + DFI R +S+ GG + VHC G +RSATLV YLM
Sbjct: 57 EAHDSPAFDMSIHFQTAADFIHRALSQPGGKILVHCAVGVSRSATLVLAYLMLY 110
>3s4o_A Protein tyrosine phosphatase-like protein; structural genomics,
medical structural genomics of pathogen protozoa, MSGPP,
unknown function; HET: MSE EPE; 2.30A {Leishmania major}
Length = 167
Score = 69.2 bits (169), Expect = 5e-16
Identities = 20/106 (18%), Positives = 34/106 (32%), Gaps = 14/106 (13%)
Query: 38 LPFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKL 97
+L V+ +V + Y A G++ D P + L
Sbjct: 34 SNLPTYIKELQHRGVRHLVRVCG--PTYDA---TLVKSRGIDVHSWPFDD-GAPPTRAVL 87
Query: 98 ERGVDFIQRI--------SKTGGTVYVHCKAGRTRSATLVGCYLMK 135
+ + + S T+ VHC AG R+ LV L++
Sbjct: 88 DSWLKLLDTELARQQEDPSVPPPTIGVHCVAGLGRAPILVALALVE 133
>2r0b_A Serine/threonine/tyrosine-interacting protein; structural genomics,
phosphatase, PSI-2, protein structure initiative; 1.60A
{Homo sapiens}
Length = 154
Score = 68.4 bits (168), Expect = 8e-16
Identities = 30/120 (25%), Positives = 48/120 (40%), Gaps = 11/120 (9%)
Query: 21 TSRRWYDRIDENIILGALP--FKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGV 78
+ RR I + LG K L + + ++ + ++ E F +
Sbjct: 1 SLRREMQEILPGLFLGPYSSAMKSKLPVLQKHGITHIICIRQNIEANFIKPNFQ---QLF 57
Query: 79 EFLQLSTRDIFDTPDQD---KLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLMK 135
+L L DI D P ++ +FI + GG V VH AG +RSA V Y+M+
Sbjct: 58 RYLVL---DIADNPVENIIRFFPMTKEFIDGSLQMGGKVLVHGNAGISRSAAFVIAYIME 114
>2q05_A Late protein H1, dual specificity protein phosphatase; structural
genomics, APC7320, P protein structure initiative; HET:
MSE; 2.57A {Vaccinia virus WR}
Length = 195
Score = 69.0 bits (169), Expect = 1e-15
Identities = 25/125 (20%), Positives = 44/125 (35%), Gaps = 17/125 (13%)
Query: 16 FMEKVTSRRWYDRIDENIILGALPFKRLTNK-LLEENVKGVVSMNEDYELYFANGREEWN 74
M + S R+ N+ LG +K + E K V+++ D +
Sbjct: 39 DMHRAKSPTIMTRVTNNVYLG--NYKNAMDAPSSEVKFKYVLNLTMDKYTLPNSN----- 91
Query: 75 KVGVEFLQLSTRDIFDTPDQD---KLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGC 131
+ + + + D D + F+ + + V VHC AG RS ++
Sbjct: 92 ---INIIHI---PLVDDTTTDISKYFDDVTAFLSKCDQRNEPVLVHCAAGVNRSGAMILA 145
Query: 132 YLMKC 136
YLM
Sbjct: 146 YLMSK 150
>3cm3_A Late protein H1, dual specificity protein phosphatase;
dual-specificity phosphatase, VH1, hydrolase; 1.32A
{Vaccinia virus} PDB: 2rf6_A 2p4d_A
Length = 176
Score = 68.6 bits (168), Expect = 1e-15
Identities = 27/133 (20%), Positives = 45/133 (33%), Gaps = 17/133 (12%)
Query: 8 YPSLFYNVFMEKVTSRRWYDRIDENIILGALPFKRLTNK-LLEENVKGVVSMNEDYELYF 66
Y L M K S R+ N+ LG +K + E K V+++ D
Sbjct: 14 YLLLRSTGDMHKAKSPTIMTRVTNNVYLG--NYKNAMDAPSSEVKFKYVLNLTMDKYTLP 71
Query: 67 ANGREEWNKVGVEFLQLSTRDIFDTPDQD---KLERGVDFIQRISKTGGTVYVHCKAGRT 123
+ + + + + D D + F+ + + V VH AG
Sbjct: 72 NSN--------INIIHI---PLVDDTTTDISKYFDDVTAFLSKCDQRNEPVLVHSAAGVN 120
Query: 124 RSATLVGCYLMKC 136
RS ++ YLM
Sbjct: 121 RSGAMILAYLMSK 133
>2hcm_A Dual specificity protein phosphatase; structural genomics, PSI,
protein structure INI NEW YORK SGX research center for
structural genomics; 2.00A {Mus musculus}
Length = 164
Score = 68.0 bits (167), Expect = 1e-15
Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 18/115 (15%)
Query: 27 DRIDENIILGALPFKRLTNK--LLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLS 84
R+ + +G + L+ + V+++ A G V L++
Sbjct: 13 ARVAPALFIG--NARAAGATELLVRAGITLCVNVSRQQPGPRAPG--------VAELRV- 61
Query: 85 TRDIFDTPDQD---KLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLMKC 136
+FD P +D LE ++ + GG+ V+CK GR+RSA + YLM+
Sbjct: 62 --PVFDDPAEDLLTHLEPTCAAMEAAVRDGGSCLVYCKNGRSRSAAVCTAYLMRH 114
>3s4e_A Dual specificity protein phosphatase 19; PTP, protein tyrosine
phosphatase, hydrolase; 1.26A {Homo sapiens}
Length = 144
Score = 66.8 bits (164), Expect = 2e-15
Identities = 23/113 (20%), Positives = 44/113 (38%), Gaps = 14/113 (12%)
Query: 27 DRIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTR 86
I ++LG+ + L + V ++++ E F + + +
Sbjct: 5 GVIKPWLLLGSQDAAHDLDTLKKNKVTHILNVAYGVENAFLSD--------FTYKSI--- 53
Query: 87 DIFDTPDQD---KLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLMKC 136
I D P+ + +FI+ + G V VH AG +R+A +V +LM
Sbjct: 54 SILDLPETNILSYFPECFEFIEEAKRKDGVVLVHSNAGVSRAAAIVIGFLMNS 106
>2g6z_A Dual specificity protein phosphatase 5; alpha/beta, hydrolase;
2.70A {Homo sapiens}
Length = 211
Score = 67.9 bits (166), Expect = 4e-15
Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 14/93 (15%)
Query: 47 LLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKL---ERGVDF 103
L ++ +++++ + + + + D+ D + +DF
Sbjct: 27 LANLHITALLNVSRRTSEACMTH--------LHYKWI---PVEDSHTADISSHFQEAIDF 75
Query: 104 IQRISKTGGTVYVHCKAGRTRSATLVGCYLMKC 136
I + + GG V VH +AG +RS T+ YLMK
Sbjct: 76 IDCVREKGGKVLVHSEAGISRSPTICMAYLMKT 108
>3ezz_A Dual specificity protein phosphatase 4; alpha/beta, hydrolase,
nucleus; 2.90A {Homo sapiens} PDB: 1m3g_A
Length = 144
Score = 66.4 bits (163), Expect = 4e-15
Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 14/93 (15%)
Query: 47 LLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQD---KLERGVDF 103
L + +++++ D +F ++ + + D D +++
Sbjct: 25 LDALGITALLNVSSDCPNHFEGH--------YQYKCI---PVEDNHKADISSWFMEAIEY 73
Query: 104 IQRISKTGGTVYVHCKAGRTRSATLVGCYLMKC 136
I + G V VH +AG +RSAT+ YLM
Sbjct: 74 IDAVKDCRGRVLVHSQAGISRSATICLAYLMMK 106
>3f81_A Dual specificity protein phosphatase 3; hydrolase, protein
dual-specificity phosphatase, inhibitor; HET: STT; 1.90A
{Homo sapiens} PDB: 1vhr_A* 1j4x_A*
Length = 183
Score = 66.9 bits (164), Expect = 6e-15
Identities = 31/134 (23%), Positives = 53/134 (39%), Gaps = 8/134 (5%)
Query: 8 YPSLFYNVFMEKVTSRRWYDRIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYELYFA 67
L + + + + I +G + KL + + V++ E
Sbjct: 10 LNDLLSDGSGCYSLPSQPCNEVTPRIYVGNASVAQDIPKLQKLGITHVLNAAEGRSFMHV 69
Query: 68 N-GREEWNKVGVEFLQLSTRDIFDTPDQD---KLERGVDFIQR-ISKTGGTVYVHCKAGR 122
N + G+ +L + DT + + ER DFI + +++ G V VHC+ G
Sbjct: 70 NTNANFYKDSGITYLGI---KANDTQEFNLSAYFERAADFIDQALAQKNGRVLVHCREGY 126
Query: 123 TRSATLVGCYLMKC 136
+RS TLV YLM
Sbjct: 127 SRSPTLVIAYLMMR 140
>3emu_A Leucine rich repeat and phosphatase domain containing protein;
structural genomics, hydrolase, PSI-2, protein structure
initiative; 2.30A {Entamoeba histolytica}
Length = 161
Score = 66.1 bits (162), Expect = 7e-15
Identities = 18/112 (16%), Positives = 39/112 (34%), Gaps = 14/112 (12%)
Query: 27 DRIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTR 86
+I + I LG+ + + N+ ++ + + F + + L+L
Sbjct: 11 TQIIQYIHLGSFLNAHNVDYIHNNNISSILLVGIEVPSLFKDQ--------CDILRL--- 59
Query: 87 DIFDTPDQD---KLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLMK 135
DI + + FI R + V + G ++ +V +LM
Sbjct: 60 DIVSEEGHQLYDSIPNAIKFIIRSIQRKEGVLIISGTGVNKAPAIVIAFLMY 111
>2nt2_A Protein phosphatase slingshot homolog 2; alpha/beta hydrolase;
2.10A {Homo sapiens}
Length = 145
Score = 65.3 bits (160), Expect = 1e-14
Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 14/113 (12%)
Query: 27 DRIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTR 86
+I E++ LG+ L V+ ++++ + + +F E+ +
Sbjct: 5 TQIFEHVFLGSEWNASNLEDLQNRGVRYILNVTREIDNFFPGV--------FEYHNI--- 53
Query: 87 DIFDTPDQD---KLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLMKC 136
++D D FI + K G VH K G +RSA+ V Y MK
Sbjct: 54 RVYDEEATDLLAYWNDTYKFISKAKKHGSKCLVHSKMGVSRSASTVIAYAMKE 106
>1wrm_A Dual specificity phosphatase 22; DSP, JNK, hydrolase; HET: MES;
1.50A {Homo sapiens}
Length = 165
Score = 65.4 bits (160), Expect = 1e-14
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 19/115 (16%)
Query: 27 DRIDENIILGALPFKRLTNK--LLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLS 84
++I + +G FK + L + V ++S+++ GV++L +
Sbjct: 8 NKILPGLYIG--NFKDARDAEQLSKNKVTHILSVHDSARPMLE---------GVKYLCI- 55
Query: 85 TRDIFDTPDQD---KLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLMKC 136
D+P Q+ + + FI G + VHC AG +RS TLV Y+M
Sbjct: 56 --PAADSPSQNLTRHFKESIKFIHECRLRGESCLVHCLAGVSRSVTLVIAYIMTV 108
>2esb_A Dual specificity protein phosphatase 18; alpha/beta structure,
hydrolase; HET: EPE; 2.00A {Homo sapiens}
Length = 188
Score = 65.8 bits (161), Expect = 1e-14
Identities = 21/113 (18%), Positives = 44/113 (38%), Gaps = 14/113 (12%)
Query: 27 DRIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTR 86
+I +++ + L + V++++ + ++++Q+
Sbjct: 21 SQITKSLYISNGVAANNKLMLSSNQITMVINVSVEVVNTLYED--------IQYMQV--- 69
Query: 87 DIFDTPDQD---KLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLMKC 136
+ D+P+ + D I + G +HC AG +RSA L YLMK
Sbjct: 70 PVADSPNSRLCDFFDPIADHIHSVEMKQGRTLLHCAAGVSRSAALCLAYLMKY 122
>2hxp_A Dual specificity protein phosphatase 9; human phosphatase,
structural genomics, PSI-2, protein structure
initiative; 1.83A {Homo sapiens} PDB: 3lj8_A 1mkp_A
Length = 155
Score = 64.9 bits (159), Expect = 2e-14
Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 12/93 (12%)
Query: 47 LLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQD---KLERGVDF 103
L + ++ ++++ + +F + + Q+ I D Q+ ++F
Sbjct: 27 LAKLGIRYILNVTPNLPNFFEKNGD------FHYKQI---PISDHWSQNLSRFFPEAIEF 77
Query: 104 IQRISKTGGTVYVHCKAGRTRSATLVGCYLMKC 136
I V VH AG +RS T+ YLM+
Sbjct: 78 IDEALSQNCGVLVHSLAGVSRSVTVTVAYLMQK 110
>2oud_A Dual specificity protein phosphatase 10; A central five-stranded
B-sheet, hydrolase; 2.80A {Homo sapiens}
Length = 177
Score = 65.4 bits (160), Expect = 2e-14
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 12/93 (12%)
Query: 47 LLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQD---KLERGVDF 103
+ N+ V+++ LY K + +L D+ Q+ E +F
Sbjct: 29 MQRLNIGYVINVTTHLPLYHYE------KGLFNYKRL---PATDSNKQNLRQYFEEAFEF 79
Query: 104 IQRISKTGGTVYVHCKAGRTRSATLVGCYLMKC 136
I+ + G + +HC+AG +RSAT+V YLMK
Sbjct: 80 IEEAHQCGKGLLIHCQAGVSRSATIVIAYLMKH 112
>1zzw_A Dual specificity protein phosphatase 10; MKP, PTP, hydrolase; 1.60A
{Homo sapiens}
Length = 149
Score = 64.5 bits (158), Expect = 2e-14
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 12/93 (12%)
Query: 47 LLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQD---KLERGVDF 103
+ N+ V+++ LY + K + +L D+ Q+ E +F
Sbjct: 25 MQRLNIGYVINVTTHLPLYH------YEKGLFNYKRL---PATDSNKQNLRQYFEEAFEF 75
Query: 104 IQRISKTGGTVYVHCKAGRTRSATLVGCYLMKC 136
I+ + G + +HC+AG +RSAT+V YLMK
Sbjct: 76 IEEAHQCGKGLLIHCQAGVSRSATIVIAYLMKH 108
>1ohe_A CDC14B, CDC14B2 phosphatase; protein phosphatase, cell cycle,
hydrolase; HET: SEP; 2.20A {Homo sapiens} SCOP: c.45.1.1
c.45.1.1 PDB: 1ohc_A 1ohd_A
Length = 348
Score = 67.4 bits (164), Expect = 2e-14
Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 9/97 (9%)
Query: 39 PFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLE 98
+ NV ++ +N+ + + G + L D TP ++
Sbjct: 206 SPETYIQYFKNHNVTTIIRLNKRMYD-----AKRFTDAGFDHHDLFFAD-GSTPTDAIVK 259
Query: 99 RGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLMK 135
+F+ G + VH KAG R+ TL+ CY+MK
Sbjct: 260 ---EFLDICENAEGAIAVHSKAGLGRTGTLIACYIMK 293
>2wgp_A Dual specificity protein phosphatase 14; MKP6, DUSP14, hydrolase,
dual specifici phosphatase; 1.88A {Homo sapiens}
Length = 190
Score = 65.4 bits (160), Expect = 2e-14
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 14/93 (15%)
Query: 47 LLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDK---LERGVDF 103
L + +V+ + + E++++ + D P + D
Sbjct: 47 LQARGITCIVNATIEIPNFNWPQ--------FEYVKV---PLADMPHAPIGLYFDTVADK 95
Query: 104 IQRISKTGGTVYVHCKAGRTRSATLVGCYLMKC 136
I +S+ G VHC AG +RSATL YLMK
Sbjct: 96 IHSVSRKHGATLVHCAAGVSRSATLCIAYLMKF 128
>1yz4_A DUSP15, dual specificity phosphatase-like 15 isoform A; hydrolase;
HET: BOG; 2.40A {Homo sapiens}
Length = 160
Score = 64.6 bits (158), Expect = 3e-14
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 77 GVEFLQLSTRDIFDTPDQD---KLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYL 133
+ +L++ + DTP+ + ++FI GG VH AG +RS T+V Y+
Sbjct: 50 DITYLRI---PVADTPEVPIKKHFKECINFIHCCRLNGGNCLVHSFAGISRSTTIVTAYV 106
Query: 134 MKC 136
M
Sbjct: 107 MTV 109
>2pq5_A Dual specificity protein phosphatase 13; hydrolase, dual
specificity phosphatase, DUSP13, testis and skeletal
muscle specific DSP; 2.30A {Homo sapiens} PDB: 2gwo_A
Length = 205
Score = 64.4 bits (157), Expect = 6e-14
Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 8/125 (6%)
Query: 15 VFMEKVTSRRWYDRIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWN 74
+++ + + D + ++ LG R +KL++ + VV+ G + +
Sbjct: 35 LWVRQAATLNHIDEVWPSLFLGDAYAARDKSKLIQLGITHVVNAAAGKFQVD-TGAKFYR 93
Query: 75 KVGVEFLQLSTRDIFDTPDQD---KLERGVDFIQR-ISKTGGTVYVHCKAGRTRSATLVG 130
+ +E+ + + D P D +I+ +S G V VHC G +RSATLV
Sbjct: 94 GMSLEYYGI---EADDNPFFDLSVYFLPVARYIRAALSVPQGRVLVHCAMGVSRSATLVL 150
Query: 131 CYLMK 135
+LM
Sbjct: 151 AFLMI 155
>2y96_A Dual specificity phosphatase DUPD1; hydrolase; 2.38A {Homo sapiens}
Length = 219
Score = 63.6 bits (155), Expect = 2e-13
Identities = 25/114 (21%), Positives = 44/114 (38%), Gaps = 8/114 (7%)
Query: 27 DRIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTR 86
+ + + +G +L + V++ G + + + +++ +
Sbjct: 55 NEVWPKLYIGDEATALDRYRLQKAGFTHVLNAAHGRWNVDT-GPDYYRDMDIQYHGV--- 110
Query: 87 DIFDTPDQD---KLERGVDFIQR-ISKTGGTVYVHCKAGRTRSATLVGCYLMKC 136
+ D P D FI R +S + VHC GR+RSATLV YLM
Sbjct: 111 EADDLPTFDLSVFFYPAAAFIDRALSDDHSKILVHCVMGRSRSATLVLAYLMIH 164
>3rz2_A Protein tyrosine phosphatase type IVA 1; tyrosine phosphatase, dual
specific phosphatase, COMP with peptide, hydrolase;
2.80A {Rattus norvegicus} PDB: 1x24_A 1zcl_A
Length = 189
Score = 62.4 bits (151), Expect = 4e-13
Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 8/100 (8%)
Query: 39 PFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLE 98
+ +L + V +V + E K G+ L D P ++
Sbjct: 49 TLNKFIEELKKYGVTTIVRVCEATYD-----TTLVEKEGIHVLDWPFDD-GAPPSNQIVD 102
Query: 99 RGVDFIQRI--SKTGGTVYVHCKAGRTRSATLVGCYLMKC 136
+ ++ + G + VHC AG R+ LV L++
Sbjct: 103 DWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIEG 142
>2c46_A MRNA capping enzyme; phosphatase, transferase, hydrolase, mRNA
processing, multifunctional enzyme,
nucleotidyltransferase; 1.6A {Homo sapiens} PDB: 1i9s_A
1i9t_A
Length = 241
Score = 62.8 bits (152), Expect = 5e-13
Identities = 20/116 (17%), Positives = 46/116 (39%), Gaps = 6/116 (5%)
Query: 22 SRRWYDRIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFL 81
R+ ++ E K L+ + +V + Y R + K G++++
Sbjct: 54 GPRYDSQVAEENRFHPSMLSNY-LKSLKVKMGLLVDLTNTSRFY---DRNDIEKEGIKYI 109
Query: 82 QLSTRDIFDTPDQDKLERGVDFIQRISKTG--GTVYVHCKAGRTRSATLVGCYLMK 135
+L + + P + E + +R ++ + VHC G R+ L+ +L++
Sbjct: 110 KLQCKGHGECPTTENTETFIRLCERFNERNPPELIGVHCTHGFNRTGFLICAFLVE 165
>1rxd_A Protein tyrosine phosphatase type IVA, member 1; protein tyrosine
phosphatase IVA1...; structural genomics, NYSGXRC,
unknown function, PSI; 1.90A {Homo sapiens} SCOP:
c.45.1.1 PDB: 1xm2_A 1zck_A 1r6h_A 1v3a_A
Length = 159
Score = 60.8 bits (147), Expect = 7e-13
Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 8/100 (8%)
Query: 39 PFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLE 98
+ +L + V +V + E K G+ L D P ++
Sbjct: 28 TLNKFIEELKKYGVTTIVRVCEATYD-----TTLVEKEGIHVLDWPFDD-GAPPSNQIVD 81
Query: 99 RGVDFIQRI--SKTGGTVYVHCKAGRTRSATLVGCYLMKC 136
+ ++ + G + VHC AG R+ LV L++
Sbjct: 82 DWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIEG 121
>1yn9_A BVP, polynucleotide 5'-phosphatase; RNA triphosphatase, cysteine
phosphatase, P-loop, hydrolase; HET: PO4; 1.50A
{Autographa californicanucleopolyhedrovirus}
Length = 169
Score = 59.2 bits (143), Expect = 4e-12
Identities = 15/88 (17%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 50 ENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRI-- 107
++ ++ + + Y + + G+ + ++ P + ++ +D ++
Sbjct: 54 PSIGAIIDLTNTSKYYDG---VHFLRAGLLYKKIQV-PGQTLPPESIVQEFIDTVKEFTE 109
Query: 108 SKTGGTVYVHCKAGRTRSATLVGCYLMK 135
G V VHC G R+ +V YLM
Sbjct: 110 KCPGMLVGVHCTHGINRTGYMVCRYLMH 137
>2j16_A SDP-1, tyrosine-protein phosphatase YIL113W; hydrolase,
hypothetical protein; 2.7A {Saccharomyces cerevisiae}
PDB: 2j17_A* 2j16_B
Length = 182
Score = 57.9 bits (140), Expect = 1e-11
Identities = 21/107 (19%), Positives = 36/107 (33%), Gaps = 13/107 (12%)
Query: 29 IDENIILGALPFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDI 88
+ E I L + P V+++ E+ VE+
Sbjct: 48 LPEKIYLYSEP-----TVKELLPFDVVINVAEEANDLR------MQVPAVEYHHYRWEH- 95
Query: 89 FDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLMK 135
D+ L I + + +H + G +RSATL+ Y+MK
Sbjct: 96 -DSQIALDLPSLTSIIHAATTKREKILIHAQCGLSRSATLIIAYIMK 141
>3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint
center for structural genomics, JCSG; HET: MSE; 1.40A
{Shewanella putrefaciens cn-32} PDB: 3gxg_A*
Length = 157
Score = 53.0 bits (127), Expect = 6e-10
Identities = 18/111 (16%), Positives = 44/111 (39%), Gaps = 6/111 (5%)
Query: 26 YDRIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYEL-YFANGREEWNKVGVEFLQLS 84
+ ++ LP ++ + L + V V+++ D + + + G++++ +
Sbjct: 15 LQQQAPQLLSSGLPNEQQFSLLKQAGVDVVINLMPDSSKDAHPDEGKLVTQAGMDYVYIP 74
Query: 85 TRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLMK 135
+ P + +E + + G V VHC A R++ Y +K
Sbjct: 75 VD--WQNPKVEDVEAFFAAMDQHK--GKDVLVHCLAN-YRASAFAYLYQLK 120
>3mmj_A MYO-inositol hexaphosphate phosphohydrolase; phytase, protein
tyrosine phosphatase, inositol phosphate, I phosphatase;
HET: IHP; 1.60A {Selenomonas ruminantium} PDB: 1u24_A
1u25_A* 1u26_A* 3o3l_A* 3moz_A* 2pt0_A 2psz_A 3d1h_A
3d1o_A 3d1q_A 2b4u_A 2b4p_A 2b4o_A
Length = 314
Score = 42.8 bits (100), Expect = 7e-06
Identities = 11/65 (16%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 70 REEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLV 129
+E G+ + +++ D P + ++R + F + + + ++ H +AG R+ +
Sbjct: 174 QEVAEAAGMRYFRIAATD-HVWPTPENIDRFLAFYRTLPQ-DAWLHFHSEAGVGRTTAFM 231
Query: 130 GCYLM 134
M
Sbjct: 232 VMTDM 236
>3f41_A Phytase; tandem repeat, protein tyrosine phosphatase, inositol
phosphatase, hydrolase; 2.30A {Mitsuokella multacida}
Length = 629
Score = 41.7 bits (97), Expect = 2e-05
Identities = 13/65 (20%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 70 REEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLV 129
E + G + +L+ +D PD +++ ++F + + K ++ HC AG R+ +
Sbjct: 193 EEMVKQHGANYFRLTLQD-HFRPDDPDVDKFLEFYKSLPK-DAWLHYHCYAGMGRTTIFM 250
Query: 130 GCYLM 134
+ +
Sbjct: 251 VMHDI 255
Score = 40.6 bits (94), Expect = 5e-05
Identities = 12/65 (18%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 70 REEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLV 129
++ K G+ + +++ D P ++ ++F + + ++ HC+AG R+ +
Sbjct: 491 QQLVEKNGLHYYRIAATD-HIWPSAANIDEFINFTRTMPA-NAWLHFHCQAGAGRTTAYM 548
Query: 130 GCYLM 134
Y M
Sbjct: 549 AMYDM 553
>1xri_A AT1G05000; structural genomics, protein structure initiative, CESG
for eukaryotic structural genomics, phosphoprote
phosphatase; 3.30A {Arabidopsis thaliana} SCOP: c.45.1.1
PDB: 2q47_A
Length = 151
Score = 37.0 bits (85), Expect = 4e-04
Identities = 17/108 (15%), Positives = 37/108 (34%), Gaps = 3/108 (2%)
Query: 28 RIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTR- 86
+D I P + L ++ ++ + + + N + + +
Sbjct: 10 MVDNGIFRSGFPDSANFSFLQTLGLRSIIYLCPEPYPESNLQFLKSNGIRLFQFGIEGNK 69
Query: 87 DIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLM 134
+ F K+ + + + V +HCK G+ R+ LVGC
Sbjct: 70 EPFVNIPDHKIRMALKVLLD--EKNHPVLIHCKRGKHRTGCLVGCLRK 115
>1d5r_A Phosphoinositide phosphotase PTEN; C2 domain, phosphotidylinositol,
hydrolase; HET: TLA; 2.10A {Homo sapiens} SCOP: b.7.1.1
c.45.1.1
Length = 324
Score = 37.6 bits (86), Expect = 5e-04
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 108 SKTGGTVYVHCKAGRTRSATLVGCYLMKC 136
+HCKAG+ R+ ++ YL+
Sbjct: 108 EDDNHVAAIHCKAGKGRTGVMICAYLLHR 136
>3v0d_A Voltage-sensor containing phosphatase; PTP, hydrolase; HET: PO4;
1.10A {Ciona intestinalis} PDB: 3v0f_A* 3v0g_A 3v0h_A*
3awf_A 3v0j_A 3awe_A 3awg_A 3v0e_A 3v0i_A
Length = 339
Score = 36.9 bits (84), Expect = 9e-04
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Query: 89 FDTPDQDKLERGVDFIQRI-----SKTGGTVYVHCKAGRTRSATLVGCYLMKC 136
D + L + FI S + +H K G+ R+ TLV +L++
Sbjct: 92 IDDHNVPTLVDLLKFIDDAKVWMTSDPDHVIAIHSKGGKGRTGTLVSSWLLED 144
>3n0a_A Tyrosine-protein phosphatase auxilin; phosphatase-like domain, C2
domain, hydrolase; 2.20A {Bos taurus}
Length = 361
Score = 35.7 bits (81), Expect = 0.003
Identities = 12/47 (25%), Positives = 15/47 (31%), Gaps = 2/47 (4%)
Query: 92 PDQDKLERGVDFIQRISKTG--GTVYVHCKAGRTRSATLVGCYLMKC 136
P L + VHC GR S+ LVG + C
Sbjct: 94 PSLHNLFAVCRNMYNWLLQNPKNVCVVHCLDGRAASSILVGAMFIFC 140
>2jjd_A Receptor-type tyrosine-protein phosphatase epsilo; transmembrane,
phosphoprotein, consorti structural, glycoprotein, SGC,
PTPRE, membrane genomics; 3.20A {Homo sapiens}
Length = 599
Score = 28.1 bits (63), Expect = 0.94
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
Query: 101 VDFIQRISKT-----GGTVYVHCKAGRTRSATLVGCYLM 134
+D I + K + VHC AG R+ T + +
Sbjct: 503 IDLIAAVQKQQQQTGNHPITVHCSAGAGRTGTFIALSNI 541
Score = 25.8 bits (57), Expect = 5.4
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 101 VDFIQRISKT----GGTVYVHCKAGRTRSATLVGCYLM 134
+ F++++ G + VHC AG R+ T + M
Sbjct: 209 LKFLKKVKTLNPVHAGPIVVHCSAGVGRTGTFIVIDAM 246
>1lar_A Protein (LAR); tyrosine phosphatease, LAR protein, hydrolase; 2.00A
{Homo sapiens} SCOP: c.45.1.2 c.45.1.2 PDB: 2fh7_A
2nv5_A
Length = 575
Score = 28.1 bits (63), Expect = 1.1
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 101 VDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLM 134
V + G + VHC AG R+ + ++
Sbjct: 490 VHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIV 523
Score = 25.4 bits (56), Expect = 7.3
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 101 VDFIQRISKT----GGTVYVHCKAGRTRSATLVGCYLM 134
+ F++R+ G + VHC AG R+ + M
Sbjct: 195 LAFLRRVKACNPLDAGPMVVHCSAGVGRTGCFIVIDAM 232
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase,
phosphoprotein, transfe two-component regulatory system;
3.80A {Thermotoga maritima}
Length = 349
Score = 27.6 bits (62), Expect = 1.4
Identities = 11/86 (12%), Positives = 31/86 (36%), Gaps = 8/86 (9%)
Query: 41 KRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQD--KLE 98
+ + +LE ++++++D + WNK + L ++ +D E
Sbjct: 7 RNFSESILESLETAIITLSKDGRITE------WNKKAEQLFGLKKENVLGRRLKDLPDFE 60
Query: 99 RGVDFIQRISKTGGTVYVHCKAGRTR 124
+ + + V+++ R
Sbjct: 61 EIGSVAESVFENKEPVFLNFYKFGER 86
>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase
(NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia
oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A*
1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A*
1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*
Length = 314
Score = 27.4 bits (61), Expect = 1.4
Identities = 11/69 (15%), Positives = 25/69 (36%), Gaps = 17/69 (24%)
Query: 60 EDYELYFANGREEWN---KVGVEFLQLST---RDIFDTPD-----QDKL-ERGVDFIQRI 107
LY +EE+ + + +L R+ + Q ++ + V+ + +
Sbjct: 208 SSL-LY----KEEFEKMKEKAPDNFRLDFAVSREQTNEKGEKMYIQTRMAQYAVELWEML 262
Query: 108 SKTGGTVYV 116
K VY+
Sbjct: 263 KKDNTYVYM 271
>1ywf_A Phosphotyrosine protein phosphatase PTPB; four stranded parallel
beta sheet with flanking helices, structural genomics,
PSI; 1.71A {Mycobacterium tuberculosis} SCOP: c.45.1.5
PDB: 2oz5_A*
Length = 296
Score = 27.2 bits (59), Expect = 1.6
Identities = 21/119 (17%), Positives = 39/119 (32%), Gaps = 8/119 (6%)
Query: 23 RRWYDRIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYELYFANG-----REEWNKVG 77
RR R+ + I + LPF L + +++ + +NG + N
Sbjct: 83 RRGPGRVPDGIDVHLLPFPDLADDDADDSAPHETAFKRLLTNDGSNGESGESSQSINDAA 142
Query: 78 VEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLMKC 136
++ R + + + G V HC AG+ R+ +V L
Sbjct: 143 TRYMTDEYRQFPTRNGAQRALH---RVVTLLAAGRPVLTHCFAGKDRTGFVVALVLEAV 198
>2nlk_A Protein tyrosine phosphatase, receptor type, G VA (fragment);
PTPRG, R-PTP gamma, protein tyrosine phosphatase gamma,
D3S1 HPTPG, RPTPG, PTPG; 2.40A {Homo sapiens}
Length = 627
Score = 27.4 bits (61), Expect = 1.7
Identities = 9/48 (18%), Positives = 14/48 (29%), Gaps = 5/48 (10%)
Query: 92 PDQDKLERGV-DFIQRI----SKTGGTVYVHCKAGRTRSATLVGCYLM 134
P+ D + I I G VH + G + L +
Sbjct: 495 PNPDAPISSTFELINVIKEEALTRDGPTIVHDEYGAVSAGMLCALTTL 542
>1lj8_A Mannitol dehydrogenase; oxidoreductase, NAD, long-chain
dehydrogenase; HET: NAD; 1.70A {Pseudomonas fluorescens}
SCOP: a.100.1.9 c.2.1.6 PDB: 1m2w_A*
Length = 493
Score = 27.2 bits (61), Expect = 1.8
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 66 FANGREEWNKVGVEF 80
F NGR W KVGV+F
Sbjct: 270 FVNGRPAWEKVGVQF 284
>1ygr_A CD45 protein tyrosine phosphatase; protein tyrosine phosphatase,
RPTP, LCA, lymphocyte activation, hydrolase; HET: PTR;
2.90A {Homo sapiens} PDB: 1ygu_A*
Length = 610
Score = 26.2 bits (58), Expect = 4.4
Identities = 5/41 (12%), Positives = 13/41 (31%)
Query: 94 QDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLM 134
+ KL + + +HC+ G ++ +
Sbjct: 522 KQKLPQKNSSEGNKHHKSTPLLIHCRDGSQQTGIFCALLNL 562
Score = 25.1 bits (55), Expect = 9.9
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 101 VDFIQRISKTG----GTVYVHCKAGRTRSATLVGCYLM 134
+ +R++ G + VH AG R+ T +G M
Sbjct: 209 LKLRRRVNAFSNFFSGPIVVHSSAGVGRTGTYIGIDAM 246
>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A
{Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A*
3jqp_A*
Length = 316
Score = 25.9 bits (57), Expect = 4.4
Identities = 9/68 (13%), Positives = 21/68 (30%), Gaps = 16/68 (23%)
Query: 60 EDYELYFANGREEWN---KVGVEFLQLST---RDIFDTPD----QDKL-ERGVDFIQRIS 108
+ LY E K+ + + QD++ +R +F+ +
Sbjct: 221 DSI-LY----LNELEYFQKMYPNNINIHYVFSYKQNSDATSFYVQDEIYKRKTEFLNLFN 275
Query: 109 KTGGTVYV 116
+Y+
Sbjct: 276 NYKCELYI 283
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
2.70A {Alicyclobacillus acidocaldarius subsp}
Length = 474
Score = 25.7 bits (56), Expect = 5.5
Identities = 13/92 (14%), Positives = 26/92 (28%), Gaps = 27/92 (29%)
Query: 61 DYELYFANGREEWNKVGVEFLQLSTR--------------DIFDTPDQDKLERG------ 100
D + + + + + + D + D+ G
Sbjct: 351 DDVVDWTDPAAVDRAAPDDVASYANVSPDEVRGALAQQGLWLLDVRNVDEWAGGHLPQAH 410
Query: 101 ---VDFI-QRISK--TGGTVYVHCKAGRTRSA 126
+ + I G+V V+C+ G RSA
Sbjct: 411 HIPLSKLAAHIHDVPRDGSVCVYCRTGG-RSA 441
>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase;
HET: FAD; 2.50A {Synechococcus SP}
Length = 402
Score = 25.6 bits (56), Expect = 5.6
Identities = 10/69 (14%), Positives = 24/69 (34%), Gaps = 17/69 (24%)
Query: 60 EDYELYFANGREEWN---KVGVEFLQLST---RDIFDTPD-----QDKL-ERGVDFIQRI 107
+ LY ++++ + +L+ R+ Q ++ E + + I
Sbjct: 296 ANI-LY----KDDFEKMAAENPDNFRLTYAISREQKTADGGKVYVQSRVSEYADELFEMI 350
Query: 108 SKTGGTVYV 116
K VY+
Sbjct: 351 QKPNTHVYM 359
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for
structural genomics of infectious diseases, csgid, HYDR;
2.10A {Staphylococcus aureus}
Length = 466
Score = 25.8 bits (56), Expect = 6.5
Identities = 7/17 (41%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
Query: 110 TGGTVYVHCKAGRTRSA 126
+YVHC++G RS+
Sbjct: 424 KNDVIYVHCQSGI-RSS 439
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich,
structural genomics; 2.00A {Staphylococcus aureus subsp}
PDB: 3iwh_A 3mzz_A
Length = 103
Score = 24.5 bits (54), Expect = 8.0
Identities = 6/14 (42%), Positives = 7/14 (50%), Gaps = 1/14 (7%)
Query: 113 TVYVHCKAGRTRSA 126
Y+ C G RSA
Sbjct: 58 IYYIVCAGGV-RSA 70
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics,
PSI-2, protein structure initiative; 1.60A
{Staphylococcus saprophyticus subsp}
Length = 100
Score = 24.5 bits (54), Expect = 8.2
Identities = 9/14 (64%), Positives = 10/14 (71%), Gaps = 1/14 (7%)
Query: 113 TVYVHCKAGRTRSA 126
T Y+ CKAG RSA
Sbjct: 58 TYYIICKAGG-RSA 70
>3ugu_A S-arrestin; arrestin fold, signal termination, GPCR, outer segment,
SIGN protein; 1.85A {Bos taurus} PDB: 3ugx_A 1cf1_A
1ayr_A
Length = 380
Score = 25.1 bits (54), Expect = 8.8
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 83 LSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVH 117
L RD D ++ + GV + G VYV
Sbjct: 36 LGKRDYIDHVERVEPVDGVVLVDPELVKGKRVYVS 70
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.140 0.425
Gapped
Lambda K H
0.267 0.0637 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,194,942
Number of extensions: 123962
Number of successful extensions: 391
Number of sequences better than 10.0: 1
Number of HSP's gapped: 380
Number of HSP's successfully gapped: 72
Length of query: 136
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 52
Effective length of database: 4,356,429
Effective search space: 226534308
Effective search space used: 226534308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.0 bits)