Query psy7475
Match_columns 295
No_of_seqs 276 out of 2405
Neff 9.3
Searched_HMMs 46136
Date Fri Aug 16 19:16:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7475.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7475hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1719|consensus 100.0 2.9E-30 6.3E-35 195.0 12.6 157 1-162 1-158 (183)
2 smart00195 DSPc Dual specifici 100.0 1.4E-28 3.1E-33 192.6 13.4 132 26-167 1-132 (138)
3 PRK12361 hypothetical protein; 100.0 1.5E-27 3.2E-32 226.3 18.3 157 1-163 66-226 (547)
4 cd00127 DSPc Dual specificity 99.9 1.7E-26 3.7E-31 180.9 12.7 129 26-162 2-130 (139)
5 KOG1718|consensus 99.9 3E-26 6.6E-31 175.8 12.5 132 25-166 16-147 (198)
6 PF00782 DSPc: Dual specificit 99.9 4.5E-26 9.7E-31 177.3 10.0 124 33-164 1-124 (133)
7 KOG1717|consensus 99.9 2.5E-25 5.5E-30 182.6 11.1 140 25-172 171-310 (343)
8 KOG1716|consensus 99.9 5.3E-24 1.2E-28 185.6 13.2 144 25-175 74-217 (285)
9 smart00195 DSPc Dual specifici 99.9 1.3E-23 2.9E-28 164.4 11.2 108 179-294 1-108 (138)
10 cd00127 DSPc Dual specificity 99.9 3.1E-22 6.8E-27 156.7 10.9 110 179-294 2-111 (139)
11 KOG1719|consensus 99.9 3.8E-22 8.2E-27 151.1 10.0 130 162-294 9-139 (183)
12 PTZ00242 protein tyrosine phos 99.9 3E-21 6.6E-26 154.7 14.7 129 22-158 7-143 (166)
13 KOG1718|consensus 99.9 2.1E-21 4.7E-26 149.2 9.3 108 179-294 17-124 (198)
14 PTZ00393 protein tyrosine phos 99.9 1.3E-20 2.9E-25 155.8 13.8 118 32-158 93-214 (241)
15 PF00782 DSPc: Dual specificit 99.8 1.8E-21 3.9E-26 151.3 7.4 103 186-294 1-103 (133)
16 PTZ00242 protein tyrosine phos 99.8 3.7E-20 8.1E-25 148.4 12.7 110 179-294 11-128 (166)
17 KOG1717|consensus 99.8 1.2E-20 2.7E-25 155.1 8.2 114 175-294 168-281 (343)
18 PRK12361 hypothetical protein; 99.8 6.9E-20 1.5E-24 174.0 13.1 122 168-294 84-206 (547)
19 KOG1720|consensus 99.8 2.7E-19 5.9E-24 142.9 11.4 112 44-164 87-198 (225)
20 PTZ00393 protein tyrosine phos 99.8 2E-18 4.3E-23 142.9 13.1 103 185-294 93-199 (241)
21 KOG1716|consensus 99.8 6.3E-19 1.4E-23 153.8 10.7 113 177-294 73-185 (285)
22 PF05706 CDKN3: Cyclin-depende 99.7 2.5E-17 5.4E-22 128.7 12.2 115 31-147 41-168 (168)
23 KOG1720|consensus 99.7 1.1E-17 2.4E-22 133.7 9.8 90 197-293 87-176 (225)
24 PF05706 CDKN3: Cyclin-depende 99.7 3.4E-17 7.4E-22 127.9 10.5 106 184-290 41-159 (168)
25 PF03162 Y_phosphatase2: Tyros 99.7 1.5E-17 3.2E-22 132.8 7.8 111 179-294 7-120 (164)
26 PF03162 Y_phosphatase2: Tyros 99.7 6.6E-17 1.4E-21 129.0 10.7 120 26-152 7-129 (164)
27 TIGR01244 conserved hypothetic 99.6 6.1E-15 1.3E-19 114.4 13.1 118 27-153 3-124 (135)
28 TIGR01244 conserved hypothetic 99.6 7.2E-15 1.6E-19 114.0 12.4 107 180-293 3-113 (135)
29 PF04273 DUF442: Putative phos 99.6 7.7E-15 1.7E-19 108.9 9.1 101 179-285 2-106 (110)
30 COG2453 CDC14 Predicted protei 99.6 9E-15 1.9E-19 119.2 10.4 84 71-156 66-149 (180)
31 COG2453 CDC14 Predicted protei 99.6 1.3E-14 2.8E-19 118.2 8.2 68 226-294 68-135 (180)
32 PF04273 DUF442: Putative phos 99.5 5E-14 1.1E-18 104.5 8.8 100 26-131 2-105 (110)
33 KOG4228|consensus 99.5 3.8E-14 8.2E-19 137.4 9.3 84 78-164 696-783 (1087)
34 PLN02727 NAD kinase 99.5 1.7E-13 3.6E-18 131.7 11.2 105 184-291 261-368 (986)
35 KOG2836|consensus 99.5 7.9E-13 1.7E-17 98.2 11.6 129 23-160 6-143 (173)
36 PLN02727 NAD kinase 99.4 1.6E-12 3.6E-17 125.0 10.8 102 32-136 262-366 (986)
37 COG3453 Uncharacterized protei 99.3 1.3E-11 2.8E-16 90.1 9.8 107 179-292 3-113 (130)
38 KOG2836|consensus 99.3 2.3E-11 5.1E-16 90.5 10.5 99 185-289 18-122 (173)
39 COG3453 Uncharacterized protei 99.3 5.8E-11 1.2E-15 86.7 11.5 117 26-151 3-123 (130)
40 KOG1572|consensus 99.3 3E-11 6.5E-16 98.9 9.4 111 179-294 60-177 (249)
41 PF13350 Y_phosphatase3: Tyros 99.3 2.1E-11 4.5E-16 98.0 8.4 103 182-287 16-147 (164)
42 KOG1572|consensus 99.2 2.7E-10 5.8E-15 93.4 10.5 120 26-152 60-186 (249)
43 smart00404 PTPc_motif Protein 99.1 2.2E-10 4.8E-15 84.6 8.3 82 79-161 4-93 (105)
44 smart00012 PTPc_DSPc Protein t 99.1 2.2E-10 4.8E-15 84.6 8.3 82 79-161 4-93 (105)
45 PF13350 Y_phosphatase3: Tyros 99.1 6.3E-10 1.4E-14 89.4 9.7 115 29-149 16-159 (164)
46 PRK15375 pathogenicity island 99.1 1.1E-09 2.3E-14 99.8 11.0 107 185-291 335-493 (535)
47 cd00047 PTPc Protein tyrosine 99.0 1E-09 2.2E-14 93.3 9.3 106 184-289 41-191 (231)
48 smart00194 PTPc Protein tyrosi 99.0 7.8E-10 1.7E-14 95.6 8.5 105 185-289 70-218 (258)
49 smart00012 PTPc_DSPc Protein t 99.0 9.6E-10 2.1E-14 81.1 7.0 58 234-291 6-66 (105)
50 smart00404 PTPc_motif Protein 99.0 9.6E-10 2.1E-14 81.1 7.0 58 234-291 6-66 (105)
51 PHA02742 protein tyrosine phos 99.0 1.9E-09 4E-14 95.1 9.2 104 185-288 94-253 (303)
52 PHA02740 protein tyrosine phos 98.9 4.7E-09 1E-13 92.1 9.8 101 185-288 92-245 (298)
53 PHA02747 protein tyrosine phos 98.9 5.5E-09 1.2E-13 92.4 9.6 104 185-288 94-253 (312)
54 PHA02738 hypothetical protein; 98.9 4.5E-09 9.8E-14 93.3 8.5 105 184-288 90-251 (320)
55 PHA02746 protein tyrosine phos 98.9 7.8E-09 1.7E-13 91.9 8.5 103 185-288 114-271 (323)
56 KOG0792|consensus 98.8 1E-08 2.2E-13 99.5 8.9 104 184-287 937-1086(1144)
57 PF14566 PTPlike_phytase: Inos 98.8 4.5E-09 9.7E-14 82.9 5.4 66 221-288 83-148 (149)
58 cd00047 PTPc Protein tyrosine 98.8 1E-08 2.2E-13 87.1 7.8 79 83-161 136-219 (231)
59 smart00194 PTPc Protein tyrosi 98.8 1.3E-08 2.8E-13 88.0 7.9 82 80-162 161-247 (258)
60 PRK15375 pathogenicity island 98.7 5.9E-08 1.3E-12 88.6 9.2 77 79-156 425-510 (535)
61 PF14566 PTPlike_phytase: Inos 98.7 3.4E-08 7.3E-13 77.9 6.7 65 69-135 84-148 (149)
62 COG5599 PTP2 Protein tyrosine 98.7 2.7E-08 5.8E-13 83.0 6.3 102 185-290 92-244 (302)
63 PHA02740 protein tyrosine phos 98.7 1.2E-07 2.7E-12 83.1 9.4 84 79-162 180-275 (298)
64 PHA02742 protein tyrosine phos 98.7 1.3E-07 2.9E-12 83.4 9.4 94 80-173 186-296 (303)
65 PF00102 Y_phosphatase: Protei 98.6 7.8E-08 1.7E-12 81.5 7.2 107 183-289 41-195 (235)
66 PHA02738 hypothetical protein; 98.6 1.1E-07 2.5E-12 84.4 7.3 85 79-163 181-282 (320)
67 COG5350 Predicted protein tyro 98.6 4.4E-07 9.5E-12 69.5 9.2 114 42-162 23-143 (172)
68 PHA02747 protein tyrosine phos 98.6 2.4E-07 5.2E-12 82.1 8.6 85 80-164 187-285 (312)
69 KOG0792|consensus 98.6 2.3E-07 4.9E-12 90.4 8.6 83 82-164 1033-1119(1144)
70 PHA02746 protein tyrosine phos 98.6 4E-07 8.7E-12 81.0 9.6 81 82-162 207-301 (323)
71 COG5350 Predicted protein tyro 98.5 2E-07 4.4E-12 71.3 6.4 93 189-282 17-111 (172)
72 COG2365 Protein tyrosine/serin 98.4 3.5E-07 7.6E-12 78.3 6.0 109 181-293 50-165 (249)
73 KOG2283|consensus 98.4 5.9E-07 1.3E-11 82.1 7.2 120 26-154 15-149 (434)
74 PF00102 Y_phosphatase: Protei 98.4 1.8E-06 3.9E-11 73.2 8.3 79 82-161 140-223 (235)
75 KOG2386|consensus 98.3 1.5E-06 3.2E-11 77.6 6.7 122 31-157 39-168 (393)
76 KOG0793|consensus 98.3 1.7E-06 3.7E-11 80.9 6.4 102 186-287 804-950 (1004)
77 COG5599 PTP2 Protein tyrosine 98.2 7.8E-07 1.7E-11 74.4 2.9 77 82-162 190-278 (302)
78 KOG2283|consensus 98.2 4.2E-07 9.2E-12 83.0 1.2 107 179-293 15-136 (434)
79 KOG0790|consensus 98.2 1.4E-06 3E-11 77.7 3.7 86 197-285 341-472 (600)
80 KOG0791|consensus 98.2 7.1E-06 1.5E-10 71.8 7.6 93 78-171 253-347 (374)
81 KOG0790|consensus 98.1 2.8E-06 6.1E-11 75.8 4.8 116 44-160 373-506 (600)
82 COG2365 Protein tyrosine/serin 98.1 5.6E-06 1.2E-10 70.9 6.5 120 32-157 54-180 (249)
83 KOG0791|consensus 98.0 1.2E-05 2.6E-10 70.5 6.4 93 197-289 182-312 (374)
84 KOG4228|consensus 97.9 8.6E-06 1.9E-10 80.4 4.2 103 185-287 608-753 (1087)
85 KOG0789|consensus 97.8 4.9E-05 1.1E-09 70.2 7.2 23 263-285 298-320 (415)
86 PF14671 DSPn: Dual specificit 97.7 0.00045 9.6E-09 53.4 9.9 83 86-171 39-132 (141)
87 KOG2386|consensus 97.6 4.9E-05 1.1E-09 68.0 4.2 96 196-294 53-154 (393)
88 KOG0789|consensus 97.6 0.00022 4.8E-09 65.8 7.7 82 78-162 265-354 (415)
89 PF04179 Init_tRNA_PT: Initiat 97.6 0.00036 7.8E-09 64.4 8.6 102 29-136 292-401 (451)
90 KOG0793|consensus 97.3 0.00042 9E-09 65.5 5.5 83 78-160 893-980 (1004)
91 PF04179 Init_tRNA_PT: Initiat 96.7 0.0063 1.4E-07 56.3 8.1 104 182-291 292-403 (451)
92 cd01518 RHOD_YceA Member of th 95.2 0.084 1.8E-06 38.3 6.6 28 262-292 59-86 (101)
93 KOG4471|consensus 94.9 0.056 1.2E-06 50.7 5.8 36 97-132 360-395 (717)
94 KOG4471|consensus 94.3 0.091 2E-06 49.4 5.6 37 250-286 360-396 (717)
95 PLN02160 thiosulfate sulfurtra 94.2 0.18 3.8E-06 39.0 6.4 28 262-292 79-106 (136)
96 PRK08057 cobalt-precorrin-6x r 94.1 1.3 2.7E-05 38.0 12.0 191 32-260 45-246 (248)
97 TIGR00715 precor6x_red precorr 93.8 1.6 3.6E-05 37.5 12.2 202 32-260 46-254 (256)
98 PRK01415 hypothetical protein; 93.6 0.37 8.1E-06 41.1 7.7 89 182-289 104-194 (247)
99 COG0607 PspE Rhodanese-related 92.8 0.37 8E-06 35.1 5.8 71 198-290 13-85 (110)
100 PF02571 CbiJ: Precorrin-6x re 92.0 2.6 5.7E-05 36.1 10.8 191 32-258 46-248 (249)
101 COG1054 Predicted sulfurtransf 91.5 2.8 6E-05 36.5 10.2 96 174-288 97-194 (308)
102 PLN02160 thiosulfate sulfurtra 91.4 0.63 1.4E-05 35.9 5.8 21 108-129 78-98 (136)
103 PF06602 Myotub-related: Myotu 90.7 0.65 1.4E-05 42.0 6.1 34 253-286 220-253 (353)
104 cd01518 RHOD_YceA Member of th 90.6 0.96 2.1E-05 32.6 5.9 19 109-128 59-77 (101)
105 PF14671 DSPn: Dual specificit 90.3 0.61 1.3E-05 36.1 4.7 55 239-294 39-100 (141)
106 PRK09629 bifunctional thiosulf 90.2 14 0.00031 36.0 15.2 29 262-293 221-249 (610)
107 PRK11493 sseA 3-mercaptopyruva 89.9 3.6 7.9E-05 35.9 10.0 28 262-292 229-256 (281)
108 cd01523 RHOD_Lact_B Member of 89.7 1.6 3.4E-05 31.3 6.4 28 262-292 59-86 (100)
109 COG0607 PspE Rhodanese-related 89.4 1.4 3.1E-05 31.9 6.1 70 45-136 13-84 (110)
110 KOG1089|consensus 89.3 0.74 1.6E-05 43.7 5.3 30 103-132 335-365 (573)
111 KOG1089|consensus 89.1 0.79 1.7E-05 43.5 5.4 25 260-284 340-364 (573)
112 PF00581 Rhodanese: Rhodanese- 88.9 2.4 5.2E-05 30.7 7.1 81 202-292 10-97 (113)
113 PRK00142 putative rhodanese-re 88.6 1.8 3.9E-05 38.5 7.1 27 263-292 170-196 (314)
114 PF06602 Myotub-related: Myotu 88.5 2.1 4.6E-05 38.7 7.6 24 109-132 229-252 (353)
115 cd01520 RHOD_YbbB Member of th 88.4 2.4 5.3E-05 32.1 6.9 31 261-293 83-113 (128)
116 cd01448 TST_Repeat_1 Thiosulfa 87.3 3.7 8E-05 30.6 7.3 29 262-292 77-105 (122)
117 PRK05320 rhodanese superfamily 86.2 3.4 7.4E-05 35.6 7.3 25 263-289 174-198 (257)
118 cd01522 RHOD_1 Member of the R 85.7 5.2 0.00011 29.7 7.3 28 262-292 62-89 (117)
119 cd01520 RHOD_YbbB Member of th 84.7 5.9 0.00013 29.9 7.3 27 108-136 83-109 (128)
120 cd01534 4RHOD_Repeat_3 Member 84.5 3.8 8.1E-05 29.0 5.8 27 263-292 55-81 (95)
121 cd01533 4RHOD_Repeat_2 Member 83.8 6.2 0.00013 28.7 6.9 27 263-292 65-91 (109)
122 cd01528 RHOD_2 Member of the R 83.5 5.1 0.00011 28.7 6.3 27 263-292 57-83 (101)
123 PRK05600 thiamine biosynthesis 83.0 2.1 4.6E-05 39.0 4.8 22 265-288 333-354 (370)
124 PRK01415 hypothetical protein; 82.1 7.6 0.00016 33.2 7.6 89 29-136 104-194 (247)
125 cd01448 TST_Repeat_1 Thiosulfa 82.1 7.3 0.00016 28.9 6.9 26 108-134 76-101 (122)
126 cd01519 RHOD_HSP67B2 Member of 82.1 2.6 5.6E-05 30.4 4.2 27 263-292 65-91 (106)
127 cd01522 RHOD_1 Member of the R 81.7 8.8 0.00019 28.5 7.1 64 52-128 15-80 (117)
128 cd01530 Cdc25 Cdc25 phosphatas 80.0 5.7 0.00012 29.8 5.6 26 262-289 66-92 (121)
129 PRK11784 tRNA 2-selenouridine 79.4 11 0.00024 34.0 8.0 28 263-292 87-114 (345)
130 PF00581 Rhodanese: Rhodanese- 79.3 18 0.00038 25.9 8.1 72 49-130 10-85 (113)
131 cd01523 RHOD_Lact_B Member of 78.7 7.4 0.00016 27.7 5.7 19 109-128 59-77 (100)
132 cd01527 RHOD_YgaP Member of th 78.4 7.2 0.00016 27.7 5.6 25 262-288 52-76 (99)
133 PRK00142 putative rhodanese-re 77.6 13 0.00028 33.1 7.9 25 110-136 170-194 (314)
134 smart00450 RHOD Rhodanese Homo 76.0 8.6 0.00019 26.7 5.4 29 262-293 54-82 (100)
135 KOG1530|consensus 73.1 6.2 0.00013 30.0 3.9 70 198-280 31-104 (136)
136 PRK07411 hypothetical protein; 72.6 7.6 0.00017 35.7 5.3 28 263-293 341-368 (390)
137 TIGR02981 phageshock_pspE phag 71.4 14 0.00029 26.8 5.4 27 263-292 57-83 (101)
138 cd05567 PTS_IIB_mannitol PTS_I 70.6 6 0.00013 27.7 3.3 21 265-286 1-21 (87)
139 TIGR03865 PQQ_CXXCW PQQ-depend 70.0 9.3 0.0002 30.4 4.6 30 262-293 114-143 (162)
140 cd01526 RHOD_ThiF Member of th 69.7 23 0.0005 26.3 6.6 28 262-292 70-97 (122)
141 PF04343 DUF488: Protein of un 69.5 20 0.00044 26.8 6.2 43 44-86 6-53 (122)
142 PRK05320 rhodanese superfamily 68.1 25 0.00054 30.3 7.2 25 110-136 174-198 (257)
143 COG1054 Predicted sulfurtransf 68.0 31 0.00067 30.3 7.6 88 28-134 104-193 (308)
144 COG2099 CobK Precorrin-6x redu 66.8 79 0.0017 27.2 9.6 176 33-239 47-231 (257)
145 cd01532 4RHOD_Repeat_1 Member 66.6 9.9 0.00021 26.7 3.8 29 263-292 49-77 (92)
146 cd01528 RHOD_2 Member of the R 65.9 21 0.00046 25.3 5.6 18 110-128 57-74 (101)
147 PRK00162 glpE thiosulfate sulf 65.5 35 0.00077 24.5 6.7 28 262-292 56-83 (108)
148 PRK11784 tRNA 2-selenouridine 64.7 34 0.00074 30.9 7.7 59 198-272 159-217 (345)
149 KOG1530|consensus 63.4 15 0.00032 28.1 4.2 75 43-128 29-105 (136)
150 cd01443 Cdc25_Acr2p Cdc25 enzy 62.8 48 0.001 24.1 7.1 20 110-129 65-84 (113)
151 TIGR03865 PQQ_CXXCW PQQ-depend 62.6 59 0.0013 25.7 7.9 26 109-136 114-139 (162)
152 PRK10287 thiosulfate:cyanide s 61.3 19 0.00041 26.2 4.5 23 263-287 59-81 (104)
153 TIGR03167 tRNA_sel_U_synt tRNA 61.2 31 0.00068 30.6 6.7 26 265-292 75-100 (311)
154 PF04343 DUF488: Protein of un 61.1 33 0.00072 25.6 6.0 44 197-240 6-54 (122)
155 cd01443 Cdc25_Acr2p Cdc25 enzy 59.7 65 0.0014 23.4 8.6 17 264-280 66-82 (113)
156 COG0794 GutQ Predicted sugar p 55.2 30 0.00066 28.6 5.1 37 248-290 26-62 (202)
157 cd01529 4RHOD_Repeats Member o 54.3 16 0.00035 25.7 3.1 28 262-292 54-81 (96)
158 TIGR03167 tRNA_sel_U_synt tRNA 52.9 40 0.00086 30.0 5.9 20 110-129 73-92 (311)
159 cd00158 RHOD Rhodanese Homolog 51.5 42 0.00091 22.6 4.9 26 262-289 48-73 (89)
160 PF10673 DUF2487: Protein of u 51.3 76 0.0016 24.7 6.5 19 45-63 78-96 (142)
161 COG3564 Uncharacterized protei 50.6 23 0.00049 25.3 3.2 26 97-122 10-35 (116)
162 PF03102 NeuB: NeuB family; I 49.8 43 0.00093 28.6 5.4 71 45-122 63-152 (241)
163 PF03668 ATP_bind_2: P-loop AT 49.1 35 0.00076 29.8 4.8 17 266-282 244-260 (284)
164 PRK05600 thiamine biosynthesis 48.8 23 0.0005 32.3 3.9 21 112-134 333-353 (370)
165 COG0381 WecB UDP-N-acetylgluco 48.5 1.1E+02 0.0023 28.1 7.9 92 197-294 23-119 (383)
166 PF13292 DXP_synthase_N: 1-deo 47.7 22 0.00048 30.7 3.3 40 224-271 229-268 (270)
167 PRK10886 DnaA initiator-associ 47.3 59 0.0013 26.7 5.7 38 247-287 24-61 (196)
168 TIGR00190 thiC thiamine biosyn 46.9 1.8E+02 0.0039 26.9 9.0 84 201-293 87-199 (423)
169 COG0794 GutQ Predicted sugar p 46.9 58 0.0013 26.9 5.5 35 96-136 27-61 (202)
170 cd01531 Acr2p Eukaryotic arsen 46.6 1.1E+02 0.0024 22.1 7.3 18 263-280 61-78 (113)
171 cd01531 Acr2p Eukaryotic arsen 46.4 1.1E+02 0.0024 22.1 7.1 21 110-130 61-81 (113)
172 PF02571 CbiJ: Precorrin-6x re 46.4 35 0.00075 29.3 4.4 83 185-269 46-135 (249)
173 cd03174 DRE_TIM_metallolyase D 46.4 1.4E+02 0.0029 25.4 8.2 78 44-124 121-203 (265)
174 cd07944 DRE_TIM_HOA_like 4-hyd 45.9 1.4E+02 0.0031 25.7 8.2 83 44-128 115-200 (266)
175 cd01444 GlpE_ST GlpE sulfurtra 45.9 31 0.00067 24.0 3.5 28 262-292 54-81 (96)
176 TIGR03217 4OH_2_O_val_ald 4-hy 45.8 1.6E+02 0.0035 26.4 8.7 80 44-125 120-202 (333)
177 COG2927 HolC DNA polymerase II 45.8 27 0.0006 27.1 3.3 23 99-121 17-39 (144)
178 cd01525 RHOD_Kc Member of the 45.7 29 0.00063 24.7 3.4 26 264-292 65-90 (105)
179 TIGR00853 pts-lac PTS system, 45.6 21 0.00045 25.6 2.5 17 265-282 4-20 (95)
180 PRK10310 PTS system galactitol 45.5 19 0.00041 25.7 2.3 17 266-283 4-20 (94)
181 PRK10886 DnaA initiator-associ 45.1 60 0.0013 26.7 5.5 38 94-134 24-61 (196)
182 cd01447 Polysulfide_ST Polysul 45.0 27 0.00058 24.7 3.1 28 262-292 59-86 (103)
183 PRK08762 molybdopterin biosynt 44.8 99 0.0022 28.2 7.4 28 262-292 55-82 (376)
184 PRK08195 4-hyroxy-2-oxovalerat 44.3 1.8E+02 0.004 26.1 8.9 80 44-125 121-203 (337)
185 PF04364 DNA_pol3_chi: DNA pol 44.0 45 0.00096 25.6 4.3 25 97-121 15-39 (137)
186 COG0279 GmhA Phosphoheptose is 43.5 47 0.001 26.6 4.3 31 246-279 23-53 (176)
187 cd01532 4RHOD_Repeat_1 Member 43.4 43 0.00093 23.3 3.9 24 110-133 49-72 (92)
188 PRK13938 phosphoheptose isomer 43.0 68 0.0015 26.4 5.5 43 91-136 25-67 (196)
189 PRK07411 hypothetical protein; 42.4 45 0.00098 30.6 4.8 17 110-127 341-357 (390)
190 PF13292 DXP_synthase_N: 1-deo 42.3 35 0.00075 29.5 3.7 40 71-118 229-268 (270)
191 COG2897 SseA Rhodanese-related 42.3 49 0.0011 29.0 4.7 18 261-278 231-248 (285)
192 PRK13938 phosphoheptose isomer 42.2 74 0.0016 26.1 5.6 42 244-288 25-66 (196)
193 COG0279 GmhA Phosphoheptose is 42.2 55 0.0012 26.2 4.5 32 93-127 23-54 (176)
194 PRK13352 thiamine biosynthesis 42.1 2E+02 0.0044 26.6 8.6 84 201-293 87-202 (431)
195 PRK05416 glmZ(sRNA)-inactivati 42.1 50 0.0011 29.0 4.8 36 247-282 221-263 (288)
196 cd07943 DRE_TIM_HOA 4-hydroxy- 41.8 1.9E+02 0.0041 24.8 8.4 79 44-125 118-199 (263)
197 cd01524 RHOD_Pyr_redox Member 41.4 1.2E+02 0.0025 20.9 6.3 27 262-291 49-75 (90)
198 PRK06036 translation initiatio 40.9 68 0.0015 28.9 5.5 20 259-278 143-162 (339)
199 PRK08057 cobalt-precorrin-6x r 40.4 59 0.0013 27.9 4.9 81 185-269 45-132 (248)
200 TIGR00190 thiC thiamine biosyn 40.1 1.7E+02 0.0037 27.0 7.8 81 47-136 86-195 (423)
201 PRK05728 DNA polymerase III su 39.4 54 0.0012 25.4 4.2 26 96-121 14-39 (142)
202 PF03668 ATP_bind_2: P-loop AT 39.2 69 0.0015 28.0 5.1 19 113-131 244-262 (284)
203 PF10302 DUF2407: DUF2407 ubiq 39.1 17 0.00037 26.2 1.2 10 112-121 86-95 (97)
204 cd01530 Cdc25 Cdc25 phosphatas 38.0 34 0.00074 25.5 2.8 22 108-130 65-87 (121)
205 PF01964 ThiC: ThiC family; I 37.3 1.2E+02 0.0027 27.8 6.5 89 47-136 85-194 (420)
206 TIGR03569 NeuB_NnaB N-acetylne 37.1 1.2E+02 0.0027 27.1 6.5 40 47-92 85-124 (329)
207 TIGR00512 salvage_mtnA S-methy 36.5 72 0.0016 28.6 5.0 20 255-274 134-157 (331)
208 PRK13352 thiamine biosynthesis 36.2 2.6E+02 0.0056 25.9 8.4 38 99-136 144-198 (431)
209 PRK00414 gmhA phosphoheptose i 36.1 96 0.0021 25.3 5.4 35 93-130 26-60 (192)
210 PRK05772 translation initiatio 35.8 76 0.0017 28.9 5.0 23 253-275 156-178 (363)
211 COG1660 Predicted P-loop-conta 35.7 73 0.0016 27.6 4.6 35 248-282 220-261 (286)
212 cd03320 OSBS o-Succinylbenzoat 34.9 1.7E+02 0.0037 25.1 7.0 25 250-274 213-237 (263)
213 PF01964 ThiC: ThiC family; I 34.6 87 0.0019 28.8 5.1 152 132-292 17-197 (420)
214 PRK06646 DNA polymerase III su 34.0 72 0.0016 25.1 4.1 26 96-121 14-39 (154)
215 TIGR01927 menC_gamma/gm+ o-suc 32.5 2.7E+02 0.0059 24.5 8.0 25 250-274 243-267 (307)
216 PF09707 Cas_Cas2CT1978: CRISP 32.5 22 0.00048 25.0 0.9 19 23-41 18-36 (86)
217 PRK05416 glmZ(sRNA)-inactivati 31.8 92 0.002 27.3 4.8 35 96-130 223-264 (288)
218 cd01521 RHOD_PspE2 Member of t 31.3 73 0.0016 23.0 3.6 29 262-292 62-91 (110)
219 COG2927 HolC DNA polymerase II 31.2 60 0.0013 25.2 3.1 22 252-273 17-38 (144)
220 PF14532 Sigma54_activ_2: Sigm 30.7 1.3E+02 0.0027 22.8 5.0 32 248-279 5-36 (138)
221 PF03861 ANTAR: ANTAR domain; 30.6 58 0.0013 20.6 2.6 23 128-152 17-39 (56)
222 COG2099 CobK Precorrin-6x redu 30.5 97 0.0021 26.6 4.5 81 186-269 48-133 (257)
223 PRK05772 translation initiatio 30.3 1.2E+02 0.0026 27.7 5.3 15 108-122 164-178 (363)
224 PF02126 PTE: Phosphotriestera 30.1 2.7E+02 0.0059 24.7 7.5 39 43-81 43-82 (308)
225 COG0084 TatD Mg-dependent DNas 30.1 80 0.0017 27.2 4.1 26 96-121 110-135 (256)
226 TIGR03642 cas_csx13 CRISPR-ass 30.1 2E+02 0.0044 21.7 5.7 51 83-136 59-114 (124)
227 PF13580 SIS_2: SIS domain; PD 30.1 1.3E+02 0.0028 22.9 4.9 34 247-283 18-51 (138)
228 COG1154 Dxs Deoxyxylulose-5-ph 29.7 75 0.0016 30.9 4.1 45 224-276 237-281 (627)
229 cd01449 TST_Repeat_2 Thiosulfa 29.7 2.2E+02 0.0047 20.5 7.0 27 263-292 77-103 (118)
230 cd05006 SIS_GmhA Phosphoheptos 29.5 1.7E+02 0.0036 23.2 5.7 34 246-282 15-48 (177)
231 PRK09875 putative hydrolase; P 29.4 3.9E+02 0.0085 23.5 10.0 21 42-62 38-58 (292)
232 PRK07878 molybdopterin biosynt 29.1 1.5E+02 0.0032 27.3 5.9 28 262-292 341-368 (392)
233 TIGR00640 acid_CoA_mut_C methy 28.8 75 0.0016 24.2 3.3 31 32-62 86-116 (132)
234 PF12683 DUF3798: Protein of u 28.8 1.9E+02 0.0042 25.1 6.0 74 45-121 124-209 (275)
235 COG1660 Predicted P-loop-conta 28.3 1.2E+02 0.0025 26.4 4.6 19 113-131 245-263 (286)
236 PRK01269 tRNA s(4)U8 sulfurtra 28.1 99 0.0021 29.3 4.7 28 262-292 447-474 (482)
237 PRK11449 putative deoxyribonuc 28.0 1.2E+02 0.0027 26.0 4.9 27 95-121 111-137 (258)
238 TIGR00204 dxs 1-deoxy-D-xylulo 27.8 76 0.0016 31.2 4.0 45 225-277 233-277 (617)
239 COG3564 Uncharacterized protei 27.7 88 0.0019 22.4 3.2 25 250-274 10-34 (116)
240 cd03174 DRE_TIM_metallolyase D 27.7 2.1E+02 0.0046 24.1 6.4 77 197-276 121-202 (265)
241 cd03323 D-glucarate_dehydratas 27.6 1.6E+02 0.0034 27.2 5.8 30 250-279 298-329 (395)
242 PF13580 SIS_2: SIS domain; PD 27.5 1.3E+02 0.0027 22.9 4.5 33 94-129 18-50 (138)
243 cd02071 MM_CoA_mut_B12_BD meth 27.2 74 0.0016 23.7 3.1 32 32-63 83-114 (122)
244 cd01317 DHOase_IIa Dihydroorot 26.1 4.1E+02 0.009 24.0 8.3 37 26-62 14-56 (374)
245 PLN02591 tryptophan synthase 26.1 3.6E+02 0.0079 23.1 7.4 130 139-276 59-199 (250)
246 COG5456 Predicted integral mem 25.9 93 0.002 24.3 3.3 56 6-61 24-83 (166)
247 COG0205 PfkA 6-phosphofructoki 25.9 4.2E+02 0.0091 24.0 8.0 77 197-276 87-174 (347)
248 cd05563 PTS_IIB_ascorbate PTS_ 25.9 85 0.0018 21.5 3.0 19 266-285 1-19 (86)
249 PRK05728 DNA polymerase III su 25.8 1.2E+02 0.0026 23.4 4.1 26 249-274 14-39 (142)
250 smart00400 ZnF_CHCC zinc finge 25.8 1.1E+02 0.0024 19.1 3.2 32 115-150 23-54 (55)
251 COG1154 Dxs Deoxyxylulose-5-ph 25.8 1E+02 0.0022 29.9 4.3 44 72-123 238-281 (627)
252 PF10727 Rossmann-like: Rossma 25.7 72 0.0016 24.2 2.7 41 77-124 68-109 (127)
253 PF04364 DNA_pol3_chi: DNA pol 25.5 80 0.0017 24.2 3.0 25 250-274 15-39 (137)
254 PF00682 HMGL-like: HMGL-like 25.4 3.8E+02 0.0082 22.3 7.5 79 44-125 114-195 (237)
255 PRK11858 aksA trans-homoaconit 25.3 5.2E+02 0.011 23.6 8.8 81 45-129 123-206 (378)
256 PRK09284 thiamine biosynthesis 25.2 5.2E+02 0.011 25.1 8.6 42 253-294 297-353 (607)
257 PRK06036 translation initiatio 25.1 84 0.0018 28.3 3.5 19 108-126 145-163 (339)
258 TIGR00512 salvage_mtnA S-methy 25.1 1.6E+02 0.0035 26.4 5.2 14 108-121 140-157 (331)
259 cd07937 DRE_TIM_PC_TC_5S Pyruv 24.9 4.5E+02 0.0098 22.7 8.7 81 44-128 124-209 (275)
260 cd07944 DRE_TIM_HOA_like 4-hyd 24.1 4.4E+02 0.0094 22.7 7.6 78 197-276 115-195 (266)
261 CHL00008 petG cytochrome b6/f 24.1 82 0.0018 18.1 2.0 16 278-293 19-34 (37)
262 cd07940 DRE_TIM_IPMS 2-isoprop 24.0 4.6E+02 0.01 22.4 8.5 79 45-125 121-203 (268)
263 PLN02225 1-deoxy-D-xylulose-5- 24.0 1.1E+02 0.0024 30.5 4.2 45 225-277 321-367 (701)
264 PF02673 BacA: Bacitracin resi 23.8 89 0.0019 27.0 3.2 27 119-149 159-185 (259)
265 PLN02444 HMP-P synthase 23.7 4.5E+02 0.0098 25.5 7.9 83 202-293 248-357 (642)
266 PRK05597 molybdopterin biosynt 23.7 83 0.0018 28.5 3.2 28 262-292 312-339 (355)
267 PRK05720 mtnA methylthioribose 23.5 1.5E+02 0.0032 26.8 4.7 24 255-278 138-161 (344)
268 COG0422 ThiC Thiamine biosynth 23.5 5.3E+02 0.012 23.7 8.0 83 202-293 89-200 (432)
269 KOG0235|consensus 23.4 2.1E+02 0.0046 23.9 5.3 51 91-149 132-186 (214)
270 PRK00665 petG cytochrome b6-f 23.1 90 0.002 17.9 2.1 16 278-293 19-34 (37)
271 PF14386 DUF4417: Domain of un 22.8 2E+02 0.0043 23.8 5.0 80 198-282 104-183 (200)
272 cd05006 SIS_GmhA Phosphoheptos 22.7 2.8E+02 0.006 21.9 5.9 34 93-129 15-48 (177)
273 COG0182 Predicted translation 22.7 55 0.0012 29.1 1.7 16 260-275 146-161 (346)
274 TIGR00753 undec_PP_bacA undeca 22.6 93 0.002 26.8 3.1 26 120-149 160-185 (255)
275 PLN02225 1-deoxy-D-xylulose-5- 22.5 1.4E+02 0.003 29.9 4.6 46 71-124 320-367 (701)
276 TIGR01460 HAD-SF-IIA Haloacid 22.3 1.5E+02 0.0032 24.9 4.3 43 250-293 16-58 (236)
277 TIGR02764 spore_ybaN_pdaB poly 22.2 2.6E+02 0.0057 22.4 5.7 24 255-278 143-166 (191)
278 PF02529 PetG: Cytochrome B6-F 22.0 1E+02 0.0022 17.8 2.2 17 278-294 19-35 (37)
279 PRK00726 murG undecaprenyldiph 21.9 5.5E+02 0.012 22.6 9.1 73 45-122 23-101 (357)
280 PRK12554 undecaprenyl pyrophos 21.8 96 0.0021 27.0 3.1 26 120-149 166-191 (276)
281 PRK00414 gmhA phosphoheptose i 21.7 1.9E+02 0.0042 23.5 4.8 33 246-281 26-58 (192)
282 PRK00281 undecaprenyl pyrophos 21.7 1E+02 0.0022 26.8 3.2 26 120-149 164-189 (268)
283 PRK08334 translation initiatio 21.6 1.6E+02 0.0035 26.7 4.5 14 261-275 158-171 (356)
284 COG0588 GpmA Phosphoglycerate 21.5 1.3E+02 0.0029 25.2 3.6 111 30-149 86-204 (230)
285 PRK11558 putative ssRNA endonu 21.4 52 0.0011 23.7 1.1 18 23-40 20-37 (97)
286 TIGR00204 dxs 1-deoxy-D-xylulo 21.3 1.4E+02 0.0031 29.3 4.5 45 73-125 234-278 (617)
287 TIGR00715 precor6x_red precorr 21.2 1.4E+02 0.003 25.7 3.9 84 186-269 47-134 (256)
288 TIGR03642 cas_csx13 CRISPR-ass 21.1 3.4E+02 0.0074 20.5 5.5 55 235-290 58-115 (124)
289 cd01720 Sm_D2 The eukaryotic S 20.9 1.3E+02 0.0028 21.2 3.0 30 101-130 4-33 (87)
290 TIGR03217 4OH_2_O_val_ald 4-hy 20.9 5.9E+02 0.013 22.8 8.0 80 195-276 118-200 (333)
291 PRK08195 4-hyroxy-2-oxovalerat 20.9 6.2E+02 0.013 22.7 8.2 80 195-276 119-201 (337)
292 TIGR03586 PseI pseudaminic aci 20.8 3.9E+02 0.0084 24.0 6.8 38 47-90 86-123 (327)
293 TIGR02613 mob_myst_B mobile my 20.5 1.1E+02 0.0024 24.8 3.1 27 267-293 120-147 (186)
294 PF02302 PTS_IIB: PTS system, 20.3 61 0.0013 22.3 1.4 16 266-281 1-16 (90)
295 PF09623 Cas_NE0113: CRISPR-as 20.1 2.4E+02 0.0052 23.8 5.0 41 96-136 96-136 (224)
No 1
>KOG1719|consensus
Probab=99.97 E-value=2.9e-30 Score=195.01 Aligned_cols=157 Identities=46% Similarity=0.803 Sum_probs=143.4
Q ss_pred CcceecchhhHHHHHHHHHhhcCCCcccccCceEEcCCcCh-hhHHHHHHcCCcEEEEcccccccccccchhhhhhcCce
Q psy7475 1 MFARVTFYPSLFYNVFMEKVTSRRWYDRIDENIILGALPFK-RLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVE 79 (295)
Q Consensus 1 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~ly~G~~~~~-~~~~~L~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~~ 79 (295)
|+||.+|+|+|.|||++.+-..++|+ ++.+.+.+|..|.. .+.+.+++.|+..|+.+.++.+.-.+ -..++..|++
T Consensus 1 ~~ar~~fyptllynvv~~k~s~~~wy-~~~~~v~~~~~~FrS~~~~~i~ke~v~gvv~~ne~yE~~a~--s~~wk~~giE 77 (183)
T KOG1719|consen 1 MGARVLFYPTLLYNVVREKASAFRWY-RIDEFVILGAMPFRSMDVPLIKKENVGGVVTLNEPYELLAP--SNLWKNYGIE 77 (183)
T ss_pred CCceeeecHHHHHHHHHHHHhhhcee-eecceEEEeecccccccchHHHhcCCCeEEEeCCchhhhhh--hHHHHhccce
Confidence 78999999999999999998888998 89999999998765 56788999999999999988775111 2378899999
Q ss_pred EEEeecCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcchHHHHHHHHHHhhccCCChHHHHHHHHhcCCcccC
Q psy7475 80 FLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLMKVTSRRWYDRIDENIILGALPFKRL 159 (295)
Q Consensus 80 ~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~~~a~~~~~~~rp~~~~ 159 (295)
++.+|..|..+.|..+.+.++++||++....|+.|+|||.+|++||+++++||||.. ++|++++|+..+++.||.+-.
T Consensus 78 ~L~i~T~D~~~~Ps~~~i~~aVeFi~k~asLGktvYVHCKAGRtRSaTvV~cYLmq~--~~wtpe~A~~~vr~iRp~VlL 155 (183)
T KOG1719|consen 78 FLVIPTRDYTGAPSLENIQKAVEFIHKNASLGKTVYVHCKAGRTRSATVVACYLMQH--KNWTPEAAVEHVRKIRPRVLL 155 (183)
T ss_pred eEEeccccccCCCCHHHHHHHHHHHHhccccCCeEEEEecCCCccchhhhhhhhhhh--cCCCHHHHHHHHHhcCcceee
Confidence 999999999999999999999999999999999999999999999999999999999 999999999999999998877
Q ss_pred CCc
Q psy7475 160 TNK 162 (295)
Q Consensus 160 ~~~ 162 (295)
.+.
T Consensus 156 ~~~ 158 (183)
T KOG1719|consen 156 RPA 158 (183)
T ss_pred cHH
Confidence 655
No 2
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.96 E-value=1.4e-28 Score=192.61 Aligned_cols=132 Identities=27% Similarity=0.306 Sum_probs=119.3
Q ss_pred cccccCceEEcCCcChhhHHHHHHcCCcEEEEcccccccccccchhhhhhcCceEEEeecCCCCCCchHHHHHHHHHHHH
Q psy7475 26 YDRIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQ 105 (295)
Q Consensus 26 ~~~i~~~ly~G~~~~~~~~~~L~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~ 105 (295)
|++|+|+||+|+++++.+.+.|+++||++|||++.+.+. ....+++|+++|+.|....++.+.+.++++||+
T Consensus 1 ~~~I~~~l~~G~~~~~~~~~~l~~~gi~~Vi~l~~~~~~--------~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~ 72 (138)
T smart00195 1 PSEILPHLYLGSYSSALNLALLKKLGITHVINVTNEVPN--------LNKKGFTYLGVPILDNTETKISPYFPEAVEFIE 72 (138)
T ss_pred CcEEeCCeEECChhHcCCHHHHHHcCCCEEEEccCCCCC--------CCCCCCEEEEEECCCCCCCChHHHHHHHHHHHH
Confidence 579999999999999999999999999999999987651 135789999999999766788899999999999
Q ss_pred HHHHcCCeEEEEcCCCCcchHHHHHHHHHHhhccCCChHHHHHHHHhcCCcccCCCcccchh
Q psy7475 106 RISKTGGTVYVHCKAGRTRSATLVGCYLMKVTSRRWYDRIDENIILGALPFKRLTNKEDRNN 167 (295)
Q Consensus 106 ~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~~~a~~~~~~~rp~~~~~~~~~~~~ 167 (295)
+..++|++|+|||.+|.|||++++++|||.. .++++++|++.+++.||...++..+..+.
T Consensus 73 ~~~~~~~~VlVHC~~G~~RS~~v~~~yl~~~--~~~~~~~A~~~v~~~R~~~~p~~~~~~qL 132 (138)
T smart00195 73 DAEKKGGKVLVHCQAGVSRSATLIIAYLMKY--RNLSLNDAYDFVKDRRPIISPNFGFLRQL 132 (138)
T ss_pred HHhcCCCeEEEECCCCCchHHHHHHHHHHHH--hCCCHHHHHHHHHHHCCccCCCHhHHHHH
Confidence 9999999999999999999999999999999 99999999999999999999886644333
No 3
>PRK12361 hypothetical protein; Provisional
Probab=99.95 E-value=1.5e-27 Score=226.29 Aligned_cols=157 Identities=23% Similarity=0.371 Sum_probs=136.9
Q ss_pred CcceecchhhH----HHHHHHHHhhcCCCcccccCceEEcCCcChhhHHHHHHcCCcEEEEcccccccccccchhhhhhc
Q psy7475 1 MFARVTFYPSL----FYNVFMEKVTSRRWYDRIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKV 76 (295)
Q Consensus 1 ~~~~~~~~p~~----~~~~~~~~~~~~~~~~~i~~~ly~G~~~~~~~~~~L~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~ 76 (295)
+++||+|+||+ .++.|.....+.+++++|.|+||+|+.+.+.|.+.|++.||++|||++.|.+. .+......
T Consensus 66 ~~~~~l~~P~l~~~~~~~~~~r~~~~~~~~~~I~~~l~lG~~~~a~d~~~L~~~gI~~Vldlt~E~~~----~~~~~~~~ 141 (547)
T PRK12361 66 WYIRWVFIPFLLGTRLYNAWARKRDSVPAIQKIDENLYLGCRLFPADLEKLKSNKITAILDVTAEFDG----LDWSLTEE 141 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCcceEEcCcEEECCCCCcccHHHHHHcCCCEEEEccccccc----cccccccc
Confidence 46899999999 66766666677789999999999999999999999999999999999976541 11223346
Q ss_pred CceEEEeecCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcchHHHHHHHHHHhhccCCChHHHHHHHHhcCCc
Q psy7475 77 GVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLMKVTSRRWYDRIDENIILGALPF 156 (295)
Q Consensus 77 ~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~~~a~~~~~~~rp~ 156 (295)
+++|+++|+.|.. .|..++++++++||++..++|++|+|||.+|+|||+++++||||.+ .+++++++|++.++++||.
T Consensus 142 ~i~yl~iPi~D~~-~p~~~~l~~a~~~i~~~~~~~~~VlVHC~~G~sRSa~vv~ayLm~~-~~~~~~~eA~~~vr~~Rp~ 219 (547)
T PRK12361 142 DIDYLNIPILDHS-VPTLAQLNQAINWIHRQVRANKSVVVHCALGRGRSVLVLAAYLLCK-DPDLTVEEVLQQIKQIRKT 219 (547)
T ss_pred CceEEEeecCCCC-CCcHHHHHHHHHHHHHHHHCCCeEEEECCCCCCcHHHHHHHHHHHh-ccCCCHHHHHHHHHHHCCC
Confidence 7999999999985 6788999999999999999999999999999999999999999976 2489999999999999999
Q ss_pred ccCCCcc
Q psy7475 157 KRLTNKE 163 (295)
Q Consensus 157 ~~~~~~~ 163 (295)
+.+++.+
T Consensus 220 v~~n~~q 226 (547)
T PRK12361 220 ARLNKRQ 226 (547)
T ss_pred CCCCHHH
Confidence 9998643
No 4
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.94 E-value=1.7e-26 Score=180.91 Aligned_cols=129 Identities=26% Similarity=0.341 Sum_probs=117.9
Q ss_pred cccccCceEEcCCcChhhHHHHHHcCCcEEEEcccccccccccchhhhhhcCceEEEeecCCCCCCchHHHHHHHHHHHH
Q psy7475 26 YDRIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQ 105 (295)
Q Consensus 26 ~~~i~~~ly~G~~~~~~~~~~L~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~ 105 (295)
+++|.|+||+|+.+++.+.+.|++.||++|||++.+.+ .+.....+++|+++|+.|.+..+....+..+++||+
T Consensus 2 ~~~i~~~l~~g~~~~~~d~~~L~~~gi~~VI~l~~~~~------~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~ 75 (139)
T cd00127 2 LSEITPGLYLGSYPAASDKELLKKLGITHVLNVAKEVP------NENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFID 75 (139)
T ss_pred cCEEcCCeEECChhHhcCHHHHHHcCCCEEEEcccCCC------CcccCCCCceEEEEEceeCCCCChHHHHHHHHHHHH
Confidence 58999999999999999999999999999999998776 134556799999999999976777888999999999
Q ss_pred HHHHcCCeEEEEcCCCCcchHHHHHHHHHHhhccCCChHHHHHHHHhcCCcccCCCc
Q psy7475 106 RISKTGGTVYVHCKAGRTRSATLVGCYLMKVTSRRWYDRIDENIILGALPFKRLTNK 162 (295)
Q Consensus 106 ~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~~~a~~~~~~~rp~~~~~~~ 162 (295)
...+++++|+|||.+|.|||++++++|+|.. .++++++|++.+++.||...++..
T Consensus 76 ~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~--~~~~~~~a~~~vr~~r~~~~~~~~ 130 (139)
T cd00127 76 DAREKGGKVLVHCLAGVSRSATLVIAYLMKT--LGLSLREAYEFVKSRRPIISPNAG 130 (139)
T ss_pred HHHhcCCcEEEECCCCCchhHHHHHHHHHHH--cCCCHHHHHHHHHHHCCccCCCHH
Confidence 9999999999999999999999999999999 899999999999999998777644
No 5
>KOG1718|consensus
Probab=99.94 E-value=3e-26 Score=175.80 Aligned_cols=132 Identities=20% Similarity=0.205 Sum_probs=121.4
Q ss_pred CcccccCceEEcCCcChhhHHHHHHcCCcEEEEcccccccccccchhhhhhcCceEEEeecCCCCCCchHHHHHHHHHHH
Q psy7475 25 WYDRIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFI 104 (295)
Q Consensus 25 ~~~~i~~~ly~G~~~~~~~~~~L~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i 104 (295)
-+++|++.||+++--.+.+...|++++|+.|||.+.|.+. ..-.+++|..+|+.|.+..++.++|+.+.+.|
T Consensus 16 ~~SqIt~sLfl~~GvaA~~k~~l~~~~It~IiNat~E~pn--------~~l~~~qy~kv~~~D~p~~~l~~hfD~vAD~I 87 (198)
T KOG1718|consen 16 GMSQITPSLFLSNGVAANDKLLLKKRKITCIINATTEVPN--------TSLPDIQYMKVPLEDTPQARLYDHFDPVADKI 87 (198)
T ss_pred chhhcCcceeEeccccccCHHHHHhcCceEEEEcccCCCC--------ccCCCceeEEEEcccCCcchhhhhhhHHHHHH
Confidence 4899999999997677888999999999999999998761 23458899999999999999999999999999
Q ss_pred HHHHHcCCeEEEEcCCCCcchHHHHHHHHHHhhccCCChHHHHHHHHhcCCcccCCCcccch
Q psy7475 105 QRISKTGGTVYVHCKAGRTRSATLVGCYLMKVTSRRWYDRIDENIILGALPFKRLTNKEDRN 166 (295)
Q Consensus 105 ~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~~~a~~~~~~~rp~~~~~~~~~~~ 166 (295)
+....+||++||||.+|+|||++++.||||++ +++++.||+.+++++||.++||.++-.+
T Consensus 88 ~~v~~~gG~TLvHC~AGVSRSAsLClAYLmK~--~~msLreAy~~vKa~RpiIRPN~GFw~Q 147 (198)
T KOG1718|consen 88 HSVIMRGGKTLVHCVAGVSRSASLCLAYLMKY--HCMSLREAYHWVKARRPIIRPNVGFWRQ 147 (198)
T ss_pred HHHHhcCCcEEEEEccccchhHHHHHHHHHHH--ccchHHHHHHHHHhhCceeCCCccHHHH
Confidence 99999999999999999999999999999999 9999999999999999999999885433
No 6
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.93 E-value=4.5e-26 Score=177.28 Aligned_cols=124 Identities=25% Similarity=0.371 Sum_probs=113.5
Q ss_pred eEEcCCcChhhHHHHHHcCCcEEEEcccccccccccchhhhhhcCceEEEeecCCCCCCchHHHHHHHHHHHHHHHHcCC
Q psy7475 33 IILGALPFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGG 112 (295)
Q Consensus 33 ly~G~~~~~~~~~~L~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~ 112 (295)
||+|+.+.+. .+.|+++||++|||++.+.+. .......+++|+++|+.|....++.+.++++++||++..++|+
T Consensus 1 lylG~~~~a~-~~~l~~~~I~~Vin~~~~~~~-----~~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~ 74 (133)
T PF00782_consen 1 LYLGSYPAAS-IAFLKNLGITHVINLQEECPN-----PYFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGG 74 (133)
T ss_dssp EEEEEHHHHC-HHHHHHTTEEEEEECSSSSST-----SHHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTS
T ss_pred CEEeCHHHHh-HHHHHHCCCCEEEEccCCCcC-----chhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccc
Confidence 7999999999 999999999999999998751 1446678999999999997788999999999999999999999
Q ss_pred eEEEEcCCCCcchHHHHHHHHHHhhccCCChHHHHHHHHhcCCcccCCCccc
Q psy7475 113 TVYVHCKAGRTRSATLVGCYLMKVTSRRWYDRIDENIILGALPFKRLTNKED 164 (295)
Q Consensus 113 ~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~~~a~~~~~~~rp~~~~~~~~~ 164 (295)
+|||||.+|.|||++++++|||.. .++++++|++.+++.||...++..+.
T Consensus 75 ~VlVHC~~G~~RS~~v~~ayLm~~--~~~~~~~A~~~v~~~rp~~~~~~~~~ 124 (133)
T PF00782_consen 75 KVLVHCKAGLSRSGAVAAAYLMKK--NGMSLEEAIEYVRSRRPQINPNPSFI 124 (133)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHH--HTSSHHHHHHHHHHHSTTSTHHHHHH
T ss_pred eeEEEeCCCcccchHHHHHHHHHH--cCCCHHHHHHHHHHHCCCCCCCHHHH
Confidence 999999999999999999999999 99999999999999999998875543
No 7
>KOG1717|consensus
Probab=99.93 E-value=2.5e-25 Score=182.58 Aligned_cols=140 Identities=18% Similarity=0.124 Sum_probs=124.2
Q ss_pred CcccccCceEEcCCcChhhHHHHHHcCCcEEEEcccccccccccchhhhhhcCceEEEeecCCCCCCchHHHHHHHHHHH
Q psy7475 25 WYDRIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFI 104 (295)
Q Consensus 25 ~~~~i~~~ly~G~~~~~~~~~~L~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i 104 (295)
+|.+|+|+||+|+..++.+.+.|+++||++|||+++..+ ........+.|.+||+.|+-...+..+|++|+.||
T Consensus 171 FPV~ilp~LYLg~a~ds~NldvLkk~gI~yviNVTpnlp------n~fe~~g~f~YkqipisDh~Sqnls~ffpEAIsfI 244 (343)
T KOG1717|consen 171 FPVEILPNLYLGCAKDSTNLDVLKKYGIKYVINVTPNLP------NNFENNGEFIYKQIPISDHASQNLSQFFPEAISFI 244 (343)
T ss_pred cchhhccchhcccccccccHHHHHhcCceEEEecCCCCc------chhhcCCceeEEeeeccchhhhhhhhhhHHHHHHH
Confidence 588999999999999999999999999999999998875 22233446899999999999899999999999999
Q ss_pred HHHHHcCCeEEEEcCCCCcchHHHHHHHHHHhhccCCChHHHHHHHHhcCCcccCCCcccchhHHHHh
Q psy7475 105 QRISKTGGTVYVHCKAGRTRSATLVGCYLMKVTSRRWYDRIDENIILGALPFKRLTNKEDRNNVFMEK 172 (295)
Q Consensus 105 ~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~~~a~~~~~~~rp~~~~~~~~~~~~~l~~~ 172 (295)
++++.++..|||||-+|++||+|+.++|||.+ ...++.+|+.+++.++..+.|+-.+.-+..-.++
T Consensus 245 deArsk~cgvLVHClaGISRSvTvtvaYLMqk--l~lslndAyd~Vk~kksnisPNFnFMgQLldfer 310 (343)
T KOG1717|consen 245 DEARSKNCGVLVHCLAGISRSVTVTVAYLMQK--LNLSLNDAYDFVKHKKSNISPNFNFMGQLLDFER 310 (343)
T ss_pred HHhhccCCcEEEeeeccccchhHHHHHHHHHH--hccchhhHHHHHHHhccCCCCCcchhHHHHHHHH
Confidence 99999999999999999999999999999999 9999999999999999998888665544444343
No 8
>KOG1716|consensus
Probab=99.91 E-value=5.3e-24 Score=185.60 Aligned_cols=144 Identities=24% Similarity=0.274 Sum_probs=128.4
Q ss_pred CcccccCceEEcCCcChhhHHHHHHcCCcEEEEcccccccccccchhhhhhcCceEEEeecCCCCCCchHHHHHHHHHHH
Q psy7475 25 WYDRIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFI 104 (295)
Q Consensus 25 ~~~~i~~~ly~G~~~~~~~~~~L~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i 104 (295)
-+++|.|++|+|+...+.+.+.+++.||++|+|+....+. .......+++|+++|+.|.+..++..+|+++++||
T Consensus 74 ~~~~i~p~l~lg~~~~~~~~~~l~~~~it~vln~~~~~~~-----~~~~~~~~~~y~~i~~~D~~~~~i~~~~~~~~~fI 148 (285)
T KOG1716|consen 74 PIVEILPNLYLGSQGVASDPDLLKKLGITHVLNVSSSCPN-----PRFLKEQGIKYLRIPVEDNPSTDILQHFPEAISFI 148 (285)
T ss_pred CceeecCCceecCcccccchhhHHHcCCCEEEEecccCCc-----cccccccCceEEeccccCCccccHHHHHHHHHHHH
Confidence 4788999999999999999999999999999999988762 11122338999999999999999999999999999
Q ss_pred HHHHHcCCeEEEEcCCCCcchHHHHHHHHHHhhccCCChHHHHHHHHhcCCcccCCCcccchhHHHHhhhc
Q psy7475 105 QRISKTGGTVYVHCKAGRTRSATLVGCYLMKVTSRRWYDRIDENIILGALPFKRLTNKEDRNNVFMEKVTS 175 (295)
Q Consensus 105 ~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~~~a~~~~~~~rp~~~~~~~~~~~~~l~~~~~~ 175 (295)
+.+..+|++|||||.+|+|||+++++||||+. .++++++|++.++++||.+.|+.++..+..-+++...
T Consensus 149 ~~a~~~~~~vlVHC~~GvSRSat~viAYlM~~--~~~~l~~A~~~vk~~R~~i~PN~gf~~QL~~~e~~l~ 217 (285)
T KOG1716|consen 149 EKAREKGGKVLVHCQAGVSRSATLVIAYLMKY--EGLSLEDAYELVKSRRPIISPNFGFLRQLLEFEKRLS 217 (285)
T ss_pred HHHHhCCCeEEEEcCCccchhHHHHHHHHHHH--cCCCHHHHHHHHHHhCCccCCCHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999 9999999999999999999999887766666555443
No 9
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.90 E-value=1.3e-23 Score=164.37 Aligned_cols=108 Identities=30% Similarity=0.415 Sum_probs=97.5
Q ss_pred cccccCeEEEcCCcChhcHHHHHHcCCCEEEEcCcccccccccchhhhhhcCceEeeccCCCCCCCCcHHHHHHHHHHHH
Q psy7475 179 YDRIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQ 258 (295)
Q Consensus 179 ~~~i~~~l~~g~~p~~~~~~~l~~~gi~~Vv~l~~~~e~~~~~~~~~~~~~~i~~~~~p~~d~~~~~~~~~~~~~~~~i~ 258 (295)
+++|.+++|+|+.|.+.+.+.++++||++|||++.+.+. ....+++|.++|+.|....+..+.+..+++||+
T Consensus 1 ~~~I~~~l~~G~~~~~~~~~~l~~~gi~~Vi~l~~~~~~--------~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~ 72 (138)
T smart00195 1 PSEILPHLYLGSYSSALNLALLKKLGITHVINVTNEVPN--------LNKKGFTYLGVPILDNTETKISPYFPEAVEFIE 72 (138)
T ss_pred CcEEeCCeEECChhHcCCHHHHHHcCCCEEEEccCCCCC--------CCCCCCEEEEEECCCCCCCChHHHHHHHHHHHH
Confidence 368999999999999999999999999999999987542 124689999999999656778899999999999
Q ss_pred HHHhCCCeEEEECCCCCChHHHHHHHHHHhcCCCCC
Q psy7475 259 RISKTGGTVYVHCKAGRTRSATLVGCYLMKLEPVPT 294 (295)
Q Consensus 259 ~~~~~~~~vlVHC~~G~~Rsg~~~~ayLm~~~~~~l 294 (295)
...+.|++|||||.+|+||||++++||||+..||++
T Consensus 73 ~~~~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~~~ 108 (138)
T smart00195 73 DAEKKGGKVLVHCQAGVSRSATLIIAYLMKYRNLSL 108 (138)
T ss_pred HHhcCCCeEEEECCCCCchHHHHHHHHHHHHhCCCH
Confidence 999999999999999999999999999999999975
No 10
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.88 E-value=3.1e-22 Score=156.71 Aligned_cols=110 Identities=28% Similarity=0.397 Sum_probs=98.9
Q ss_pred cccccCeEEEcCCcChhcHHHHHHcCCCEEEEcCcccccccccchhhhhhcCceEeeccCCCCCCCCcHHHHHHHHHHHH
Q psy7475 179 YDRIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQ 258 (295)
Q Consensus 179 ~~~i~~~l~~g~~p~~~~~~~l~~~gi~~Vv~l~~~~e~~~~~~~~~~~~~~i~~~~~p~~d~~~~~~~~~~~~~~~~i~ 258 (295)
+++|.+++|+|+.|.+.+.+.|+++||++|||++++.+. +.....+++|.++|+.|.+..+....+..++++|+
T Consensus 2 ~~~i~~~l~~g~~~~~~d~~~L~~~gi~~VI~l~~~~~~------~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~ 75 (139)
T cd00127 2 LSEITPGLYLGSYPAASDKELLKKLGITHVLNVAKEVPN------ENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFID 75 (139)
T ss_pred cCEEcCCeEECChhHhcCHHHHHHcCCCEEEEcccCCCC------cccCCCCceEEEEEceeCCCCChHHHHHHHHHHHH
Confidence 468999999999999999999999999999999987652 33556799999999999876677788999999999
Q ss_pred HHHhCCCeEEEECCCCCChHHHHHHHHHHhcCCCCC
Q psy7475 259 RISKTGGTVYVHCKAGRTRSATLVGCYLMKLEPVPT 294 (295)
Q Consensus 259 ~~~~~~~~vlVHC~~G~~Rsg~~~~ayLm~~~~~~l 294 (295)
...+.+++|+|||.+|.||||+++++|||.+++|++
T Consensus 76 ~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~ 111 (139)
T cd00127 76 DAREKGGKVLVHCLAGVSRSATLVIAYLMKTLGLSL 111 (139)
T ss_pred HHHhcCCcEEEECCCCCchhHHHHHHHHHHHcCCCH
Confidence 999889999999999999999999999999999874
No 11
>KOG1719|consensus
Probab=99.87 E-value=3.8e-22 Score=151.14 Aligned_cols=130 Identities=47% Similarity=0.798 Sum_probs=117.2
Q ss_pred cccchhHHHHhhhcCCCcccccCeEEEcCCcCh-hcHHHHHHcCCCEEEEcCcccccccccchhhhhhcCceEeeccCCC
Q psy7475 162 KEDRNNVFMEKVTSRRWYDRIDENIILGALPFK-RLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRD 240 (295)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~i~~~l~~g~~p~~-~~~~~l~~~gi~~Vv~l~~~~e~~~~~~~~~~~~~~i~~~~~p~~d 240 (295)
.+..|+...++....+|+ ++++.+++|..|+. .+.+.++..|+..|++++++.|...+ ...|+..|++++.+|..|
T Consensus 9 ptllynvv~~k~s~~~wy-~~~~~v~~~~~~FrS~~~~~i~ke~v~gvv~~ne~yE~~a~--s~~wk~~giE~L~i~T~D 85 (183)
T KOG1719|consen 9 PTLLYNVVREKASAFRWY-RIDEFVILGAMPFRSMDVPLIKKENVGGVVTLNEPYELLAP--SNLWKNYGIEFLVIPTRD 85 (183)
T ss_pred HHHHHHHHHHHHhhhcee-eecceEEEeecccccccchHHHhcCCCeEEEeCCchhhhhh--hHHHHhccceeEEecccc
Confidence 356899999998889998 88889999999975 57788999999999999999886222 237999999999999999
Q ss_pred CCCCCcHHHHHHHHHHHHHHHhCCCeEEEECCCCCChHHHHHHHHHHhcCCCCC
Q psy7475 241 IFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLMKLEPVPT 294 (295)
Q Consensus 241 ~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg~~~~ayLm~~~~~~l 294 (295)
....|..+.+.++++||+...+.|+.|.|||++|.+||+|+++||||.+.+|+.
T Consensus 86 ~~~~Ps~~~i~~aVeFi~k~asLGktvYVHCKAGRtRSaTvV~cYLmq~~~wtp 139 (183)
T KOG1719|consen 86 YTGAPSLENIQKAVEFIHKNASLGKTVYVHCKAGRTRSATVVACYLMQHKNWTP 139 (183)
T ss_pred ccCCCCHHHHHHHHHHHHhccccCCeEEEEecCCCccchhhhhhhhhhhcCCCH
Confidence 988999999999999999999999999999999999999999999999999984
No 12
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.87 E-value=3e-21 Score=154.66 Aligned_cols=129 Identities=17% Similarity=0.121 Sum_probs=110.9
Q ss_pred cCCCcccccCceEEcCCcCh----hhHHHHHHcCCcEEEEcccccccccccchhhhhhcCceEEEeecCCCCCCchHHHH
Q psy7475 22 SRRWYDRIDENIILGALPFK----RLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKL 97 (295)
Q Consensus 22 ~~~~~~~i~~~ly~G~~~~~----~~~~~L~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 97 (295)
+.+.++-+..++..-..|.. .+.+.|++.||++||+++.+.+ ..+.+...|++|+++|+.|. ..|..+.+
T Consensus 7 ~~~~~~~~~~r~~~~~~P~~~~~~~~l~~L~~~gI~~Iv~l~~~~~-----~~~~~~~~gi~~~~~p~~D~-~~P~~~~i 80 (166)
T PTZ00242 7 KDRQIEYVLFKFLILDAPSPSNLPLYIKELQRYNVTHLVRVCGPTY-----DAELLEKNGIEVHDWPFDDG-APPPKAVI 80 (166)
T ss_pred CCcceeeeceEEEEecCCCcccHHHHHHHHHhCCCeEEEecCCCCC-----CHHHHHHCCCEEEecCCCCC-CCCCHHHH
Confidence 45567778888888877776 5568899999999999987643 34567788999999999997 47888889
Q ss_pred HHHHHHHHHHHHc----CCeEEEEcCCCCcchHHHHHHHHHHhhccCCChHHHHHHHHhcCCccc
Q psy7475 98 ERGVDFIQRISKT----GGTVYVHCKAGRTRSATLVGCYLMKVTSRRWYDRIDENIILGALPFKR 158 (295)
Q Consensus 98 ~~~~~~i~~~~~~----~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~~~a~~~~~~~rp~~~ 158 (295)
.++++++++.+.. |++|+|||.+|.||||+++++|||.. .++++++|+..+++.||...
T Consensus 81 ~~~~~~i~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~--~~~s~~eAi~~vr~~R~~~i 143 (166)
T PTZ00242 81 DNWLRLLDQEFAKQSTPPETIAVHCVAGLGRAPILVALALVEY--GGMEPLDAVGFVREKRKGAI 143 (166)
T ss_pred HHHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHh--CCCCHHHHHHHHHHHCCCCc
Confidence 9999999998755 99999999999999999999999999 78999999999999999653
No 13
>KOG1718|consensus
Probab=99.86 E-value=2.1e-21 Score=149.20 Aligned_cols=108 Identities=20% Similarity=0.299 Sum_probs=99.1
Q ss_pred cccccCeEEEcCCcChhcHHHHHHcCCCEEEEcCcccccccccchhhhhhcCceEeeccCCCCCCCCcHHHHHHHHHHHH
Q psy7475 179 YDRIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQ 258 (295)
Q Consensus 179 ~~~i~~~l~~g~~p~~~~~~~l~~~gi~~Vv~l~~~~e~~~~~~~~~~~~~~i~~~~~p~~d~~~~~~~~~~~~~~~~i~ 258 (295)
+++|++.+|+++.-.+.+...++..+|++|||.+.+.+. ..+ .+++|..+|+.|.+.....++|+.+.+.|+
T Consensus 17 ~SqIt~sLfl~~GvaA~~k~~l~~~~It~IiNat~E~pn------~~l--~~~qy~kv~~~D~p~~~l~~hfD~vAD~I~ 88 (198)
T KOG1718|consen 17 MSQITPSLFLSNGVAANDKLLLKKRKITCIINATTEVPN------TSL--PDIQYMKVPLEDTPQARLYDHFDPVADKIH 88 (198)
T ss_pred hhhcCcceeEeccccccCHHHHHhcCceEEEEcccCCCC------ccC--CCceeEEEEcccCCcchhhhhhhHHHHHHH
Confidence 689999999998888889899999999999999887653 112 388999999999999999999999999999
Q ss_pred HHHhCCCeEEEECCCCCChHHHHHHHHHHhcCCCCC
Q psy7475 259 RISKTGGTVYVHCKAGRTRSATLVGCYLMKLEPVPT 294 (295)
Q Consensus 259 ~~~~~~~~vlVHC~~G~~Rsg~~~~ayLm~~~~~~l 294 (295)
+...+||++||||.+|+|||+++|.||||++.+|+|
T Consensus 89 ~v~~~gG~TLvHC~AGVSRSAsLClAYLmK~~~msL 124 (198)
T KOG1718|consen 89 SVIMRGGKTLVHCVAGVSRSASLCLAYLMKYHCMSL 124 (198)
T ss_pred HHHhcCCcEEEEEccccchhHHHHHHHHHHHccchH
Confidence 999999999999999999999999999999999987
No 14
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.85 E-value=1.3e-20 Score=155.76 Aligned_cols=118 Identities=20% Similarity=0.200 Sum_probs=103.5
Q ss_pred ceEEcCCcCh----hhHHHHHHcCCcEEEEcccccccccccchhhhhhcCceEEEeecCCCCCCchHHHHHHHHHHHHHH
Q psy7475 32 NIILGALPFK----RLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRI 107 (295)
Q Consensus 32 ~ly~G~~~~~----~~~~~L~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~ 107 (295)
++.+=..|.. ...+.|++.||+.||++++..+ ..+.++..|++++++|++|. ..|..+.++++++++++.
T Consensus 93 rfLi~~~P~~~~~~~yl~eLk~~gV~~lVrlcE~~Y-----d~~~~~~~GI~~~~lpipDg-~aPs~~~i~~~l~~i~~~ 166 (241)
T PTZ00393 93 KILILDAPTNDLLPLYIKEMKNYNVTDLVRTCERTY-----NDGEITSAGINVHELIFPDG-DAPTVDIVSNWLTIVNNV 166 (241)
T ss_pred eEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCCCC-----CHHHHHHcCCeEEEeecCCC-CCCCHHHHHHHHHHHHHH
Confidence 4555555664 4558899999999999988654 46677899999999999998 588889999999999999
Q ss_pred HHcCCeEEEEcCCCCcchHHHHHHHHHHhhccCCChHHHHHHHHhcCCccc
Q psy7475 108 SKTGGTVYVHCKAGRTRSATLVGCYLMKVTSRRWYDRIDENIILGALPFKR 158 (295)
Q Consensus 108 ~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~~~a~~~~~~~rp~~~ 158 (295)
+..|++|+|||.+|.||||+++++|||.. |+++++|++++|+.||...
T Consensus 167 l~~g~~VaVHC~AGlGRTGtl~AayLI~~---GmspeeAI~~VR~~RPgAI 214 (241)
T PTZ00393 167 IKNNRAVAVHCVAGLGRAPVLASIVLIEF---GMDPIDAIVFIRDRRKGAI 214 (241)
T ss_pred HhcCCeEEEECCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHCCCCC
Confidence 99999999999999999999999999966 9999999999999999874
No 15
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.85 E-value=1.8e-21 Score=151.28 Aligned_cols=103 Identities=29% Similarity=0.506 Sum_probs=92.8
Q ss_pred EEEcCCcChhcHHHHHHcCCCEEEEcCcccccccccchhhhhhcCceEeeccCCCCCCCCcHHHHHHHHHHHHHHHhCCC
Q psy7475 186 IILGALPFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGG 265 (295)
Q Consensus 186 l~~g~~p~~~~~~~l~~~gi~~Vv~l~~~~e~~~~~~~~~~~~~~i~~~~~p~~d~~~~~~~~~~~~~~~~i~~~~~~~~ 265 (295)
+|+|+.+.+. .+.++++||++|||++.+.+.. ......+++++++|+.|....+..+.+..+.+||+.+.++|+
T Consensus 1 lylG~~~~a~-~~~l~~~~I~~Vin~~~~~~~~-----~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~ 74 (133)
T PF00782_consen 1 LYLGSYPAAS-IAFLKNLGITHVINLQEECPNP-----YFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGG 74 (133)
T ss_dssp EEEEEHHHHC-HHHHHHTTEEEEEECSSSSSTS-----HHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTS
T ss_pred CEEeCHHHHh-HHHHHHCCCCEEEEccCCCcCc-----hhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccc
Confidence 6899999888 9999999999999999876421 345667999999999996678889999999999999999999
Q ss_pred eEEEECCCCCChHHHHHHHHHHhcCCCCC
Q psy7475 266 TVYVHCKAGRTRSATLVGCYLMKLEPVPT 294 (295)
Q Consensus 266 ~vlVHC~~G~~Rsg~~~~ayLm~~~~~~l 294 (295)
+|||||.+|+||||++++||||..++||+
T Consensus 75 ~VlVHC~~G~~RS~~v~~ayLm~~~~~~~ 103 (133)
T PF00782_consen 75 KVLVHCKAGLSRSGAVAAAYLMKKNGMSL 103 (133)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHTSSH
T ss_pred eeEEEeCCCcccchHHHHHHHHHHcCCCH
Confidence 99999999999999999999999999974
No 16
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.84 E-value=3.7e-20 Score=148.36 Aligned_cols=110 Identities=19% Similarity=0.210 Sum_probs=93.8
Q ss_pred cccccCeEEEcCCcChhc----HHHHHHcCCCEEEEcCcccccccccchhhhhhcCceEeeccCCCCCCCCcHHHHHHHH
Q psy7475 179 YDRIDENIILGALPFKRL----TNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGV 254 (295)
Q Consensus 179 ~~~i~~~l~~g~~p~~~~----~~~l~~~gi~~Vv~l~~~~e~~~~~~~~~~~~~~i~~~~~p~~d~~~~~~~~~~~~~~ 254 (295)
++.+..+++.-..|..+. .+.|+++||++||+++.+. ..++.+...|+++.++|++|. .+|..+.+..++
T Consensus 11 ~~~~~~r~~~~~~P~~~~~~~~l~~L~~~gI~~Iv~l~~~~-----~~~~~~~~~gi~~~~~p~~D~-~~P~~~~i~~~~ 84 (166)
T PTZ00242 11 IEYVLFKFLILDAPSPSNLPLYIKELQRYNVTHLVRVCGPT-----YDAELLEKNGIEVHDWPFDDG-APPPKAVIDNWL 84 (166)
T ss_pred eeeeceEEEEecCCCcccHHHHHHHHHhCCCeEEEecCCCC-----CCHHHHHHCCCEEEecCCCCC-CCCCHHHHHHHH
Confidence 456778888888887744 4888999999999998753 234567888999999999997 588888899999
Q ss_pred HHHHHHHhC----CCeEEEECCCCCChHHHHHHHHHHhcCCCCC
Q psy7475 255 DFIQRISKT----GGTVYVHCKAGRTRSATLVGCYLMKLEPVPT 294 (295)
Q Consensus 255 ~~i~~~~~~----~~~vlVHC~~G~~Rsg~~~~ayLm~~~~~~l 294 (295)
+++++.... |++|+|||.+|+||||+++++|||.++++++
T Consensus 85 ~~i~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~~~~s~ 128 (166)
T PTZ00242 85 RLLDQEFAKQSTPPETIAVHCVAGLGRAPILVALALVEYGGMEP 128 (166)
T ss_pred HHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHhCCCCH
Confidence 999987654 8999999999999999999999999998874
No 17
>KOG1717|consensus
Probab=99.83 E-value=1.2e-20 Score=155.12 Aligned_cols=114 Identities=22% Similarity=0.252 Sum_probs=102.1
Q ss_pred cCCCcccccCeEEEcCCcChhcHHHHHHcCCCEEEEcCcccccccccchhhhhhcCceEeeccCCCCCCCCcHHHHHHHH
Q psy7475 175 SRRWYDRIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGV 254 (295)
Q Consensus 175 ~~~~~~~i~~~l~~g~~p~~~~~~~l~~~gi~~Vv~l~~~~e~~~~~~~~~~~~~~i~~~~~p~~d~~~~~~~~~~~~~~ 254 (295)
+..|+.+|.|++|+|....+.+.+-|+++||++|||+++..+..+. ....+.|..+|+.|.........|.+++
T Consensus 168 ra~FPV~ilp~LYLg~a~ds~NldvLkk~gI~yviNVTpnlpn~fe------~~g~f~YkqipisDh~Sqnls~ffpEAI 241 (343)
T KOG1717|consen 168 RASFPVEILPNLYLGCAKDSTNLDVLKKYGIKYVINVTPNLPNNFE------NNGEFIYKQIPISDHASQNLSQFFPEAI 241 (343)
T ss_pred ccCcchhhccchhcccccccccHHHHHhcCceEEEecCCCCcchhh------cCCceeEEeeeccchhhhhhhhhhHHHH
Confidence 3456889999999999999999999999999999999987654332 2246889999999998889999999999
Q ss_pred HHHHHHHhCCCeEEEECCCCCChHHHHHHHHHHhcCCCCC
Q psy7475 255 DFIQRISKTGGTVYVHCKAGRTRSATLVGCYLMKLEPVPT 294 (295)
Q Consensus 255 ~~i~~~~~~~~~vlVHC~~G~~Rsg~~~~ayLm~~~~~~l 294 (295)
.||+++++++..|||||-+|++||.|+++||||.+...|+
T Consensus 242 sfIdeArsk~cgvLVHClaGISRSvTvtvaYLMqkl~lsl 281 (343)
T KOG1717|consen 242 SFIDEARSKNCGVLVHCLAGISRSVTVTVAYLMQKLNLSL 281 (343)
T ss_pred HHHHHhhccCCcEEEeeeccccchhHHHHHHHHHHhccch
Confidence 9999999999999999999999999999999999988775
No 18
>PRK12361 hypothetical protein; Provisional
Probab=99.82 E-value=6.9e-20 Score=173.99 Aligned_cols=122 Identities=22% Similarity=0.410 Sum_probs=102.7
Q ss_pred HHHHhhhcCCCcccccCeEEEcCCcChhcHHHHHHcCCCEEEEcCcccccccccchhhhhhcCceEeeccCCCCCCCCcH
Q psy7475 168 VFMEKVTSRRWYDRIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQ 247 (295)
Q Consensus 168 ~l~~~~~~~~~~~~i~~~l~~g~~p~~~~~~~l~~~gi~~Vv~l~~~~e~~~~~~~~~~~~~~i~~~~~p~~d~~~~~~~ 247 (295)
.+.++.....++++|.|++|+|+.|.+.+.+.|+++||++|||++.+.+. .+......+++|.++|+.|. ..|..
T Consensus 84 ~~~r~~~~~~~~~~I~~~l~lG~~~~a~d~~~L~~~gI~~Vldlt~E~~~----~~~~~~~~~i~yl~iPi~D~-~~p~~ 158 (547)
T PRK12361 84 AWARKRDSVPAIQKIDENLYLGCRLFPADLEKLKSNKITAILDVTAEFDG----LDWSLTEEDIDYLNIPILDH-SVPTL 158 (547)
T ss_pred HHHhcccCCCcceEEcCcEEECCCCCcccHHHHHHcCCCEEEEccccccc----ccccccccCceEEEeecCCC-CCCcH
Confidence 33444445577899999999999999999999999999999999976542 11122345799999999998 47788
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEECCCCCChHHHHHHHHHHhc-CCCCC
Q psy7475 248 DKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLMKL-EPVPT 294 (295)
Q Consensus 248 ~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg~~~~ayLm~~-~~~~l 294 (295)
++++++++||++..++|++|||||.+|+|||+++++||||.+ .++|+
T Consensus 159 ~~l~~a~~~i~~~~~~~~~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~ 206 (547)
T PRK12361 159 AQLNQAINWIHRQVRANKSVVVHCALGRGRSVLVLAAYLLCKDPDLTV 206 (547)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEECCCCCCcHHHHHHHHHHHhccCCCH
Confidence 999999999999999999999999999999999999999976 47764
No 19
>KOG1720|consensus
Probab=99.81 E-value=2.7e-19 Score=142.85 Aligned_cols=112 Identities=24% Similarity=0.366 Sum_probs=102.7
Q ss_pred HHHHHHcCCcEEEEcccccccccccchhhhhhcCceEEEeecCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCCCCc
Q psy7475 44 TNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRT 123 (295)
Q Consensus 44 ~~~L~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~ 123 (295)
...++.++++.+|.+....+ ++..+.+.|+.++++++.|. ..|....+.++++..+.+.+ |++|.|||.+|.|
T Consensus 87 ~~~~~~~~v~s~vrln~~~y-----d~~~f~~~Gi~h~~l~f~Dg-~tP~~~~v~~fv~i~e~~~~-~g~iaVHCkaGlG 159 (225)
T KOG1720|consen 87 IQYFKNNNVTSIVRLNKRLY-----DAKRFTDAGIDHHDLFFADG-STPTDAIVKEFVKIVENAEK-GGKIAVHCKAGLG 159 (225)
T ss_pred HHHhhhcccceEEEcCCCCC-----ChHHhcccCceeeeeecCCC-CCCCHHHHHHHHHHHHHHHh-cCeEEEEeccCCC
Confidence 35577899999999998776 57889999999999999999 58999999999999999998 9999999999999
Q ss_pred chHHHHHHHHHHhhccCCChHHHHHHHHhcCCcccCCCccc
Q psy7475 124 RSATLVGCYLMKVTSRRWYDRIDENIILGALPFKRLTNKED 164 (295)
Q Consensus 124 Rs~~~~~~~l~~~~~~~~~~~~a~~~~~~~rp~~~~~~~~~ 164 (295)
|||++++||||+. +++|+.||++++|..||-...+++|.
T Consensus 160 RTG~liAc~lmy~--~g~ta~eaI~~lR~~RpG~V~gpqQ~ 198 (225)
T KOG1720|consen 160 RTGTLIACYLMYE--YGMTAGEAIAWLRICRPGAVIGPQQH 198 (225)
T ss_pred chhHHHHHHHHHH--hCCCHHHHHHHHHhcCCccccCHHHH
Confidence 9999999999999 99999999999999999988887644
No 20
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.79 E-value=2e-18 Score=142.88 Aligned_cols=103 Identities=22% Similarity=0.306 Sum_probs=89.5
Q ss_pred eEEEcCCcChh----cHHHHHHcCCCEEEEcCcccccccccchhhhhhcCceEeeccCCCCCCCCcHHHHHHHHHHHHHH
Q psy7475 185 NIILGALPFKR----LTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRI 260 (295)
Q Consensus 185 ~l~~g~~p~~~----~~~~l~~~gi~~Vv~l~~~~e~~~~~~~~~~~~~~i~~~~~p~~d~~~~~~~~~~~~~~~~i~~~ 260 (295)
.+++-..|... .++.|+++||++||+++++. +..+.+.+.||+++++|++|. ..|..+.+++++++++..
T Consensus 93 rfLi~~~P~~~~~~~yl~eLk~~gV~~lVrlcE~~-----Yd~~~~~~~GI~~~~lpipDg-~aPs~~~i~~~l~~i~~~ 166 (241)
T PTZ00393 93 KILILDAPTNDLLPLYIKEMKNYNVTDLVRTCERT-----YNDGEITSAGINVHELIFPDG-DAPTVDIVSNWLTIVNNV 166 (241)
T ss_pred eEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCCC-----CCHHHHHHcCCeEEEeecCCC-CCCCHHHHHHHHHHHHHH
Confidence 56777778754 45889999999999998753 345678899999999999998 688889999999999999
Q ss_pred HhCCCeEEEECCCCCChHHHHHHHHHHhcCCCCC
Q psy7475 261 SKTGGTVYVHCKAGRTRSATLVGCYLMKLEPVPT 294 (295)
Q Consensus 261 ~~~~~~vlVHC~~G~~Rsg~~~~ayLm~~~~~~l 294 (295)
.+.|++|+|||.+|+||||+++|+|||. .||+.
T Consensus 167 l~~g~~VaVHC~AGlGRTGtl~AayLI~-~Gmsp 199 (241)
T PTZ00393 167 IKNNRAVAVHCVAGLGRAPVLASIVLIE-FGMDP 199 (241)
T ss_pred HhcCCeEEEECCCCCCHHHHHHHHHHHH-cCCCH
Confidence 8899999999999999999999999997 67763
No 21
>KOG1716|consensus
Probab=99.79 E-value=6.3e-19 Score=153.78 Aligned_cols=113 Identities=27% Similarity=0.377 Sum_probs=101.3
Q ss_pred CCcccccCeEEEcCCcChhcHHHHHHcCCCEEEEcCcccccccccchhhhhhcCceEeeccCCCCCCCCcHHHHHHHHHH
Q psy7475 177 RWYDRIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDF 256 (295)
Q Consensus 177 ~~~~~i~~~l~~g~~p~~~~~~~l~~~gi~~Vv~l~~~~e~~~~~~~~~~~~~~i~~~~~p~~d~~~~~~~~~~~~~~~~ 256 (295)
.-+..+.|++|+|+.+.+.+.+.+++.||++|+|+....+... .....+++|.++|+.|.+..++..+++++++|
T Consensus 73 ~~~~~i~p~l~lg~~~~~~~~~~l~~~~it~vln~~~~~~~~~-----~~~~~~~~y~~i~~~D~~~~~i~~~~~~~~~f 147 (285)
T KOG1716|consen 73 NPIVEILPNLYLGSQGVASDPDLLKKLGITHVLNVSSSCPNPR-----FLKEQGIKYLRIPVEDNPSTDILQHFPEAISF 147 (285)
T ss_pred CCceeecCCceecCcccccchhhHHHcCCCEEEEecccCCccc-----cccccCceEEeccccCCccccHHHHHHHHHHH
Confidence 4577899999999999999999999999999999988755311 12333899999999999888999999999999
Q ss_pred HHHHHhCCCeEEEECCCCCChHHHHHHHHHHhcCCCCC
Q psy7475 257 IQRISKTGGTVYVHCKAGRTRSATLVGCYLMKLEPVPT 294 (295)
Q Consensus 257 i~~~~~~~~~vlVHC~~G~~Rsg~~~~ayLm~~~~~~l 294 (295)
|+.+...|++|||||.+|+|||+++++||||++.+|+|
T Consensus 148 I~~a~~~~~~vlVHC~~GvSRSat~viAYlM~~~~~~l 185 (285)
T KOG1716|consen 148 IEKAREKGGKVLVHCQAGVSRSATLVIAYLMKYEGLSL 185 (285)
T ss_pred HHHHHhCCCeEEEEcCCccchhHHHHHHHHHHHcCCCH
Confidence 99999999999999999999999999999999999986
No 22
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.74 E-value=2.5e-17 Score=128.66 Aligned_cols=115 Identities=21% Similarity=0.245 Sum_probs=83.1
Q ss_pred CceEEcCCcC----------hhhHHHHHHcCCcEEEEccccccc---ccccchhhhhhcCceEEEeecCCCCCCchHHHH
Q psy7475 31 ENIILGALPF----------KRLTNKLLEENVKGVVSMNEDYEL---YFANGREEWNKVGVEFLQLSTRDIFDTPDQDKL 97 (295)
Q Consensus 31 ~~ly~G~~~~----------~~~~~~L~~~gi~~Vv~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 97 (295)
..|.+..+|. ..|++.|+..|++.||.+++..++ ..++..+.++..|+.++|+||.|.. .|....+
T Consensus 41 ~~Lglt~~PG~k~~d~~RdL~~DL~~Lk~~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~-aPd~~~~ 119 (168)
T PF05706_consen 41 GFLGLTFLPGCKFKDWRRDLQADLERLKDWGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGS-APDFAAA 119 (168)
T ss_dssp SEEEEES-TT-EETTEEB-HHHHHHHHHHTT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS----HHHH
T ss_pred ceeeeecCCCcccccccchHHHHHHHHHHCCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCC-CCCHHHH
Confidence 3577777776 467789999999999999998887 6667788899999999999999995 7777777
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCCCCcchHHHHHHHHHHhhccCCChHHHH
Q psy7475 98 ERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLMKVTSRRWYDRIDE 147 (295)
Q Consensus 98 ~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~~~a~ 147 (295)
.++++.+...+++|++|+|||.+|.||||++++++|+.. +..+++++|+
T Consensus 120 ~~i~~eL~~~L~~g~~V~vHC~GGlGRtGlvAAcLLl~L-~~~~~p~~AI 168 (168)
T PF05706_consen 120 WQILEELAARLENGRKVLVHCRGGLGRTGLVAACLLLEL-GDTMSPEQAI 168 (168)
T ss_dssp HHHHHHHHHHHHTT--EEEE-SSSSSHHHHHHHHHHHHH--SSS-HHHHH
T ss_pred HHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHH-cCCCChhhcC
Confidence 788888999999999999999999999999999999887 4568999885
No 23
>KOG1720|consensus
Probab=99.74 E-value=1.1e-17 Score=133.74 Aligned_cols=90 Identities=29% Similarity=0.506 Sum_probs=82.3
Q ss_pred HHHHHHcCCCEEEEcCcccccccccchhhhhhcCceEeeccCCCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEECCCCCC
Q psy7475 197 TNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRT 276 (295)
Q Consensus 197 ~~~l~~~gi~~Vv~l~~~~e~~~~~~~~~~~~~~i~~~~~p~~d~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~ 276 (295)
++.+++.+|++++.|+... +.+..+.+.||.++++|+.|+ .+|..+.+.++++.++.+.+ +|+|.|||++|.|
T Consensus 87 ~~~~~~~~v~s~vrln~~~-----yd~~~f~~~Gi~h~~l~f~Dg-~tP~~~~v~~fv~i~e~~~~-~g~iaVHCkaGlG 159 (225)
T KOG1720|consen 87 IQYFKNNNVTSIVRLNKRL-----YDAKRFTDAGIDHHDLFFADG-STPTDAIVKEFVKIVENAEK-GGKIAVHCKAGLG 159 (225)
T ss_pred HHHhhhcccceEEEcCCCC-----CChHHhcccCceeeeeecCCC-CCCCHHHHHHHHHHHHHHHh-cCeEEEEeccCCC
Confidence 3567789999999998764 556788999999999999999 69999999999999999998 9999999999999
Q ss_pred hHHHHHHHHHHhcCCCC
Q psy7475 277 RSATLVGCYLMKLEPVP 293 (295)
Q Consensus 277 Rsg~~~~ayLm~~~~~~ 293 (295)
|||+++|||||+..|||
T Consensus 160 RTG~liAc~lmy~~g~t 176 (225)
T KOG1720|consen 160 RTGTLIACYLMYEYGMT 176 (225)
T ss_pred chhHHHHHHHHHHhCCC
Confidence 99999999999999987
No 24
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.72 E-value=3.4e-17 Score=127.89 Aligned_cols=106 Identities=24% Similarity=0.295 Sum_probs=74.6
Q ss_pred CeEEEcCCcC----------hhcHHHHHHcCCCEEEEcCccccc---ccccchhhhhhcCceEeeccCCCCCCCCcHHHH
Q psy7475 184 ENIILGALPF----------KRLTNKLLEENVKGVVSMNEDYEL---YFANGREEWNKVGVEFLQLSTRDIFDTPDQDKL 250 (295)
Q Consensus 184 ~~l~~g~~p~----------~~~~~~l~~~gi~~Vv~l~~~~e~---~~~~~~~~~~~~~i~~~~~p~~d~~~~~~~~~~ 250 (295)
..+.++..|- .+|++.|+++|++.||.+++..|. +.+...+.+++.|+.++|+||.|.. .|..+..
T Consensus 41 ~~Lglt~~PG~k~~d~~RdL~~DL~~Lk~~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~-aPd~~~~ 119 (168)
T PF05706_consen 41 GFLGLTFLPGCKFKDWRRDLQADLERLKDWGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGS-APDFAAA 119 (168)
T ss_dssp SEEEEES-TT-EETTEEB-HHHHHHHHHHTT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS----HHHH
T ss_pred ceeeeecCCCcccccccchHHHHHHHHHHCCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCC-CCCHHHH
Confidence 4577777774 566789999999999999998886 6667778899999999999999994 6666666
Q ss_pred HHHHHHHHHHHhCCCeEEEECCCCCChHHHHHHHHHHhcC
Q psy7475 251 ERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLMKLE 290 (295)
Q Consensus 251 ~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg~~~~ayLm~~~ 290 (295)
.++++.+...+++|++|+|||.+|.||||+++|++|+.-.
T Consensus 120 ~~i~~eL~~~L~~g~~V~vHC~GGlGRtGlvAAcLLl~L~ 159 (168)
T PF05706_consen 120 WQILEELAARLENGRKVLVHCRGGLGRTGLVAACLLLELG 159 (168)
T ss_dssp HHHHHHHHHHHHTT--EEEE-SSSSSHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHc
Confidence 6788888888999999999999999999999999998643
No 25
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=99.72 E-value=1.5e-17 Score=132.80 Aligned_cols=111 Identities=16% Similarity=0.292 Sum_probs=74.4
Q ss_pred cccccCeEEEcCCcChhcHHHHHHcCCCEEEEcCcccccccccchhhhhhcCceEeeccCCCCCC---CCcHHHHHHHHH
Q psy7475 179 YDRIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFD---TPDQDKLERGVD 255 (295)
Q Consensus 179 ~~~i~~~l~~g~~p~~~~~~~l~~~gi~~Vv~l~~~~e~~~~~~~~~~~~~~i~~~~~p~~d~~~---~~~~~~~~~~~~ 255 (295)
|..|.+++|+|+.|.+.++++|+++|+++||+|+.+... .......++.|+++.++++..... ....+.+.++++
T Consensus 7 F~~V~~~vYRS~~P~~~n~~fL~~L~LKTII~L~~e~~~--~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~ 84 (164)
T PF03162_consen 7 FGMVEPGVYRSAQPTPANFPFLERLGLKTIINLRPEPPS--QDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALE 84 (164)
T ss_dssp -EEEETTEEEESS--HHHHHHHHHHT-SEEEE--SS-----HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHH
T ss_pred ccCCCCCccCCCCCChhhHHHHHHCCCceEEEecCCCCC--HHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHH
Confidence 678999999999999999999999999999999987532 122345688999999999976632 245677888888
Q ss_pred HHHHHHhCCCeEEEECCCCCChHHHHHHHHHHhcCCCCC
Q psy7475 256 FIQRISKTGGTVYVHCKAGRTRSATLVGCYLMKLEPVPT 294 (295)
Q Consensus 256 ~i~~~~~~~~~vlVHC~~G~~Rsg~~~~ayLm~~~~~~l 294 (295)
.|.+. .+.||||||..|.+|||+++|||- +.+||++
T Consensus 85 ~ild~--~n~PvLiHC~~G~~rTG~vvg~lR-k~Q~W~~ 120 (164)
T PF03162_consen 85 IILDP--RNYPVLIHCNHGKDRTGLVVGCLR-KLQGWSL 120 (164)
T ss_dssp HHH-G--GG-SEEEE-SSSSSHHHHHHHHHH-HHTTB-H
T ss_pred HHhCC--CCCCEEEEeCCCCcchhhHHHHHH-HHcCCCH
Confidence 77554 346999999999999999999999 7899985
No 26
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=99.71 E-value=6.6e-17 Score=129.05 Aligned_cols=120 Identities=15% Similarity=0.259 Sum_probs=81.7
Q ss_pred cccccCceEEcCCcChhhHHHHHHcCCcEEEEcccccccccccchhhhhhcCceEEEeecCCCCC---CchHHHHHHHHH
Q psy7475 26 YDRIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFD---TPDQDKLERGVD 102 (295)
Q Consensus 26 ~~~i~~~ly~G~~~~~~~~~~L~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~---~~~~~~~~~~~~ 102 (295)
+..|.++||.|++|.+.+..+|+++|+++||+|+.+.+. .......+..|++++++++..... ....+.+.++++
T Consensus 7 F~~V~~~vYRS~~P~~~n~~fL~~L~LKTII~L~~e~~~--~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~ 84 (164)
T PF03162_consen 7 FGMVEPGVYRSAQPTPANFPFLERLGLKTIINLRPEPPS--QDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALE 84 (164)
T ss_dssp -EEEETTEEEESS--HHHHHHHHHHT-SEEEE--SS-----HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHH
T ss_pred ccCCCCCccCCCCCChhhHHHHHHCCCceEEEecCCCCC--HHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHH
Confidence 578999999999999999999999999999999987642 112335578999999999976532 234557778888
Q ss_pred HHHHHHHcCCeEEEEcCCCCcchHHHHHHHHHHhhccCCChHHHHHHHHh
Q psy7475 103 FIQRISKTGGTVYVHCKAGRTRSATLVGCYLMKVTSRRWYDRIDENIILG 152 (295)
Q Consensus 103 ~i~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~~~a~~~~~~ 152 (295)
+|.+.. ..||||||..|..|||++++||. +. +||+..+|++-.+.
T Consensus 85 ~ild~~--n~PvLiHC~~G~~rTG~vvg~lR-k~--Q~W~~~~i~~Ey~~ 129 (164)
T PF03162_consen 85 IILDPR--NYPVLIHCNHGKDRTGLVVGCLR-KL--QGWSLSSIFDEYRR 129 (164)
T ss_dssp HHH-GG--G-SEEEE-SSSSSHHHHHHHHHH-HH--TTB-HHHHHHHHHH
T ss_pred HHhCCC--CCCEEEEeCCCCcchhhHHHHHH-HH--cCCCHHHHHHHHHH
Confidence 776654 46999999999999999999999 66 79999999988875
No 27
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.63 E-value=6.1e-15 Score=114.43 Aligned_cols=118 Identities=17% Similarity=0.102 Sum_probs=91.2
Q ss_pred ccccCceEEcCCcChhhHHHHHHcCCcEEEEccccccc-ccccc---hhhhhhcCceEEEeecCCCCCCchHHHHHHHHH
Q psy7475 27 DRIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYEL-YFANG---REEWNKVGVEFLQLSTRDIFDTPDQDKLERGVD 102 (295)
Q Consensus 27 ~~i~~~ly~G~~~~~~~~~~L~~~gi~~Vv~l~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 102 (295)
.+|++++|+++.++..|.+.|+++||++|||+....+. ..+.. .......|++|+++|+... ....+.+..+.+
T Consensus 3 ~~i~~~~~~s~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~--~~~~~~v~~f~~ 80 (135)
T TIGR01244 3 RKLTEHLYVSPQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAG--DITPDDVETFRA 80 (135)
T ss_pred eEcCCCeeEcCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCC--CCCHHHHHHHHH
Confidence 57899999999999999999999999999999976553 11111 1223457999999998764 344445555556
Q ss_pred HHHHHHHcCCeEEEEcCCCCcchHHHHHHHHHHhhccCCChHHHHHHHHhc
Q psy7475 103 FIQRISKTGGTVYVHCKAGRTRSATLVGCYLMKVTSRRWYDRIDENIILGA 153 (295)
Q Consensus 103 ~i~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 153 (295)
+++ ...+|||+||++|. ||+.+.+.++... |++.+++++..+..
T Consensus 81 ~~~---~~~~pvL~HC~sG~-Rt~~l~al~~~~~---g~~~~~i~~~~~~~ 124 (135)
T TIGR01244 81 AIG---AAEGPVLAYCRSGT-RSSLLWGFRQAAE---GVPVEEIVRRAQAA 124 (135)
T ss_pred HHH---hCCCCEEEEcCCCh-HHHHHHHHHHHHc---CCCHHHHHHHHHHc
Confidence 665 34689999999999 9999887776555 89999999988764
No 28
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.62 E-value=7.2e-15 Score=114.02 Aligned_cols=107 Identities=21% Similarity=0.202 Sum_probs=81.3
Q ss_pred ccccCeEEEcCCcChhcHHHHHHcCCCEEEEcCcccccccccch----hhhhhcCceEeeccCCCCCCCCcHHHHHHHHH
Q psy7475 180 DRIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYELYFANGR----EEWNKVGVEFLQLSTRDIFDTPDQDKLERGVD 255 (295)
Q Consensus 180 ~~i~~~l~~g~~p~~~~~~~l~~~gi~~Vv~l~~~~e~~~~~~~----~~~~~~~i~~~~~p~~d~~~~~~~~~~~~~~~ 255 (295)
.++++.+++++.+++.+++.|+++|+++|||+++..|....... +.....|++|+++|+... ....+.+..+.+
T Consensus 3 ~~i~~~~~~s~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~--~~~~~~v~~f~~ 80 (135)
T TIGR01244 3 RKLTEHLYVSPQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAG--DITPDDVETFRA 80 (135)
T ss_pred eEcCCCeeEcCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCC--CCCHHHHHHHHH
Confidence 46889999999999999999999999999999987764211111 123457999999998865 345555665556
Q ss_pred HHHHHHhCCCeEEEECCCCCChHHHHHHHHHHhcCCCC
Q psy7475 256 FIQRISKTGGTVYVHCKAGRTRSATLVGCYLMKLEPVP 293 (295)
Q Consensus 256 ~i~~~~~~~~~vlVHC~~G~~Rsg~~~~ayLm~~~~~~ 293 (295)
+++ +..+|||+||++|+ |||++.+.++.. .|++
T Consensus 81 ~~~---~~~~pvL~HC~sG~-Rt~~l~al~~~~-~g~~ 113 (135)
T TIGR01244 81 AIG---AAEGPVLAYCRSGT-RSSLLWGFRQAA-EGVP 113 (135)
T ss_pred HHH---hCCCCEEEEcCCCh-HHHHHHHHHHHH-cCCC
Confidence 565 34589999999999 998888777765 5554
No 29
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=99.59 E-value=7.7e-15 Score=108.85 Aligned_cols=101 Identities=17% Similarity=0.285 Sum_probs=66.4
Q ss_pred cccccCeEEEcCCcChhcHHHHHHcCCCEEEEcCccccc----ccccchhhhhhcCceEeeccCCCCCCCCcHHHHHHHH
Q psy7475 179 YDRIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYEL----YFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGV 254 (295)
Q Consensus 179 ~~~i~~~l~~g~~p~~~~~~~l~~~gi~~Vv~l~~~~e~----~~~~~~~~~~~~~i~~~~~p~~d~~~~~~~~~~~~~~ 254 (295)
+.++++.++++++|++.+++.+++.|+++|||++...|. ......+..++.|++|+|+|+... ....+.+..+.
T Consensus 2 i~~i~~~~~vs~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~--~~~~~~v~~f~ 79 (110)
T PF04273_consen 2 IRQISDDLSVSGQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGG--AITEEDVEAFA 79 (110)
T ss_dssp -EEEETTEEEECS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TT--T--HHHHHHHH
T ss_pred CEecCCCeEECCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCC--CCCHHHHHHHH
Confidence 357889999999999999999999999999999987664 222334567789999999999865 56667777555
Q ss_pred HHHHHHHhCCCeEEEECCCCCChHHHHHHHH
Q psy7475 255 DFIQRISKTGGTVYVHCKAGRTRSATLVGCY 285 (295)
Q Consensus 255 ~~i~~~~~~~~~vlVHC~~G~~Rsg~~~~ay 285 (295)
+.+++ ..+|||+||..|. ||+++.+..
T Consensus 80 ~~l~~---~~~Pvl~hC~sG~-Ra~~l~~l~ 106 (110)
T PF04273_consen 80 DALES---LPKPVLAHCRSGT-RASALWALA 106 (110)
T ss_dssp HHHHT---TTTSEEEE-SCSH-HHHHHHHHH
T ss_pred HHHHh---CCCCEEEECCCCh-hHHHHHHHH
Confidence 55554 4579999999995 998776653
No 30
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.59 E-value=9e-15 Score=119.17 Aligned_cols=84 Identities=29% Similarity=0.369 Sum_probs=73.2
Q ss_pred hhhhhcCceEEEeecCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcchHHHHHHHHHHhhccCCChHHHHHHH
Q psy7475 71 EEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLMKVTSRRWYDRIDENII 150 (295)
Q Consensus 71 ~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~~~a~~~~ 150 (295)
...+..++.+.++|+.|+. .|....+.+++++|++...+|++|+|||.+|.||||++++||||.. +..+..++++..+
T Consensus 66 ~~~~~~~~~~~~~~~~D~~-~p~~~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~-~~~~~~~~~i~~~ 143 (180)
T COG2453 66 AIEENDGIQVLHLPILDGT-VPDLEDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLY-GGLSLADEAIAVK 143 (180)
T ss_pred ceeccCCceeeeeeecCCC-CCcHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHH-cCCCCHHHHHHHH
Confidence 3456778999999999995 7777999999999999999999999999999999999999999988 4566677777777
Q ss_pred HhcCCc
Q psy7475 151 LGALPF 156 (295)
Q Consensus 151 ~~~rp~ 156 (295)
+..||.
T Consensus 144 ~~~r~~ 149 (180)
T COG2453 144 RRRRPG 149 (180)
T ss_pred HhcCCc
Confidence 777775
No 31
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.55 E-value=1.3e-14 Score=118.21 Aligned_cols=68 Identities=34% Similarity=0.552 Sum_probs=61.8
Q ss_pred hhhcCceEeeccCCCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEECCCCCChHHHHHHHHHHhcCCCCC
Q psy7475 226 WNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLMKLEPVPT 294 (295)
Q Consensus 226 ~~~~~i~~~~~p~~d~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg~~~~ayLm~~~~~~l 294 (295)
....++.+.++|+.|. ..|..+.+.+++++|++..++|++|+|||.+|+|||||+++||||++++.++
T Consensus 68 ~~~~~~~~~~~~~~D~-~~p~~~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~ 135 (180)
T COG2453 68 EENDGIQVLHLPILDG-TVPDLEDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSL 135 (180)
T ss_pred eccCCceeeeeeecCC-CCCcHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCC
Confidence 4446899999999999 5777899999999999999999999999999999999999999999977654
No 32
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=99.53 E-value=5e-14 Score=104.53 Aligned_cols=100 Identities=17% Similarity=0.309 Sum_probs=65.8
Q ss_pred cccccCceEEcCCcChhhHHHHHHcCCcEEEEccccccc----ccccchhhhhhcCceEEEeecCCCCCCchHHHHHHHH
Q psy7475 26 YDRIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYEL----YFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGV 101 (295)
Q Consensus 26 ~~~i~~~ly~G~~~~~~~~~~L~~~gi~~Vv~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 101 (295)
+.+|++.+++++++...++..|++.|+++|||++.+.+- .........+..|++|+++|+... ....+.+..+.
T Consensus 2 i~~i~~~~~vs~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~--~~~~~~v~~f~ 79 (110)
T PF04273_consen 2 IRQISDDLSVSGQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGG--AITEEDVEAFA 79 (110)
T ss_dssp -EEEETTEEEECS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TT--T--HHHHHHHH
T ss_pred CEecCCCeEECCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCC--CCCHHHHHHHH
Confidence 468999999999999999999999999999999977542 222234567789999999999864 45566676666
Q ss_pred HHHHHHHHcCCeEEEEcCCCCcchHHHHHH
Q psy7475 102 DFIQRISKTGGTVYVHCKAGRTRSATLVGC 131 (295)
Q Consensus 102 ~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~~ 131 (295)
+.+++. .+|||+||..|. ||+++.++
T Consensus 80 ~~l~~~---~~Pvl~hC~sG~-Ra~~l~~l 105 (110)
T PF04273_consen 80 DALESL---PKPVLAHCRSGT-RASALWAL 105 (110)
T ss_dssp HHHHTT---TTSEEEE-SCSH-HHHHHHHH
T ss_pred HHHHhC---CCCEEEECCCCh-hHHHHHHH
Confidence 665553 579999999996 99877654
No 33
>KOG4228|consensus
Probab=99.51 E-value=3.8e-14 Score=137.39 Aligned_cols=84 Identities=15% Similarity=0.090 Sum_probs=58.3
Q ss_pred ceEEEeecCCCCCCchHHHHHHHHHHHHHHHH----cCCeEEEEcCCCCcchHHHHHHHHHHhhccCCChHHHHHHHHhc
Q psy7475 78 VEFLQLSTRDIFDTPDQDKLERGVDFIQRISK----TGGTVYVHCKAGRTRSATLVGCYLMKVTSRRWYDRIDENIILGA 153 (295)
Q Consensus 78 ~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~----~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 153 (295)
.+++...|+|+. .|... ...++|+.+... ..||++|||++|.||||++++..-|..+.......+.+..++..
T Consensus 696 ~qfhFt~Wpd~g-vPe~~--t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi~iDaml~~~~~e~~vdiy~~v~~l 772 (1087)
T KOG4228|consen 696 RQFHFTAWPDHG-VPETP--TGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFIVIDAMLDRLECEGKVDIYGHVKTL 772 (1087)
T ss_pred eeeeeccCCCCC-Ccccc--hHHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEEEeHHHHHHHHhhCccceechhHHH
Confidence 356667788884 55432 234456666543 33999999999999999999988887655566666777777776
Q ss_pred CCcccCCCccc
Q psy7475 154 LPFKRLTNKED 164 (295)
Q Consensus 154 rp~~~~~~~~~ 164 (295)
|..+..+.+..
T Consensus 773 R~QR~~mVQt~ 783 (1087)
T KOG4228|consen 773 RRQRNNMVQTE 783 (1087)
T ss_pred HhccccccccH
Confidence 66666555444
No 34
>PLN02727 NAD kinase
Probab=99.49 E-value=1.7e-13 Score=131.69 Aligned_cols=105 Identities=16% Similarity=0.260 Sum_probs=87.5
Q ss_pred CeEEEcCCcChhcHHHHHHcCCCEEEEcCccccc---ccccchhhhhhcCceEeeccCCCCCCCCcHHHHHHHHHHHHHH
Q psy7475 184 ENIILGALPFKRLTNKLLEENVKGVVSMNEDYEL---YFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRI 260 (295)
Q Consensus 184 ~~l~~g~~p~~~~~~~l~~~gi~~Vv~l~~~~e~---~~~~~~~~~~~~~i~~~~~p~~d~~~~~~~~~~~~~~~~i~~~ 260 (295)
-.++++++|.+.+++.+.+.|+++|||++.+.|. ......+..++.|++|+|+|+.+. ..+..+.++++.+++++
T Consensus 261 ~~~~rsgQpspe~la~LA~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~-~apt~EqVe~fa~~l~~- 338 (986)
T PLN02727 261 AAFWRGGQVTEEGLKWLLEKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVR-TAPSAEQVEKFASLVSD- 338 (986)
T ss_pred eeEEEeCCCCHHHHHHHHHCCCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCC-CCCCHHHHHHHHHHHHh-
Confidence 3689999999999999999999999999998763 111233455668999999999886 58888999988888855
Q ss_pred HhCCCeEEEECCCCCChHHHHHHHHHHhcCC
Q psy7475 261 SKTGGTVYVHCKAGRTRSATLVGCYLMKLEP 291 (295)
Q Consensus 261 ~~~~~~vlVHC~~G~~Rsg~~~~ayLm~~~~ 291 (295)
...+|||+||+.|.+|||+++|+||.+.-+
T Consensus 339 -slpkPVLvHCKSGarRAGamvA~yl~~~~~ 368 (986)
T PLN02727 339 -SSKKPIYLHSKEGVWRTSAMVSRWKQYMTR 368 (986)
T ss_pred -hcCCCEEEECCCCCchHHHHHHHHHHHHcc
Confidence 345799999999999999999999997655
No 35
>KOG2836|consensus
Probab=99.48 E-value=7.9e-13 Score=98.24 Aligned_cols=129 Identities=19% Similarity=0.182 Sum_probs=101.7
Q ss_pred CCCcccccC---ceEEcCCcCh----hhHHHHHHcCCcEEEEcccccccccccchhhhhhcCceEEEeecCCCCCCchHH
Q psy7475 23 RRWYDRIDE---NIILGALPFK----RLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQD 95 (295)
Q Consensus 23 ~~~~~~i~~---~ly~G~~~~~----~~~~~L~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 95 (295)
|+-|.+|.- +..+-.-|+. .-.+.|+++|+++||.+|+..+ +....+..||..+..|+.|.. .|...
T Consensus 6 rPAPveIsy~~MrFLIThnPtnaTln~fieELkKygvttvVRVCe~TY-----dt~~lek~GI~Vldw~f~dg~-ppp~q 79 (173)
T KOG2836|consen 6 RPAPVEISYKNMRFLITHNPTNATLNKFIEELKKYGVTTVVRVCEPTY-----DTTPLEKEGITVLDWPFDDGA-PPPNQ 79 (173)
T ss_pred CCCCeeeeccceEEEEecCCCchhHHHHHHHHHhcCCeEEEEeccccc-----CCchhhhcCceEeecccccCC-CCchH
Confidence 555666642 2344444443 2357899999999999999876 567788899999999999984 66667
Q ss_pred HHHHHHHHHHHHHHc--CCeEEEEcCCCCcchHHHHHHHHHHhhccCCChHHHHHHHHhcCCcccCC
Q psy7475 96 KLERGVDFIQRISKT--GGTVYVHCKAGRTRSATLVGCYLMKVTSRRWYDRIDENIILGALPFKRLT 160 (295)
Q Consensus 96 ~~~~~~~~i~~~~~~--~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~~~a~~~~~~~rp~~~~~ 160 (295)
.+++..+++.....+ |.-|.|||.+|.||++.+++.-|+.. |+..++|++++|..|...-.+
T Consensus 80 vv~~w~~l~~~~f~e~p~~cvavhcvaglgrapvlvalalie~---gmkyedave~ir~krrga~n~ 143 (173)
T KOG2836|consen 80 VVDDWLSLVKTKFREEPGCCVAVHCVAGLGRAPVLVALALIEA---GMKYEDAVEMIRQKRRGAINS 143 (173)
T ss_pred HHHHHHHHHHHHHhhCCCCeEEEEeecccCcchHHHHHHHHHc---cccHHHHHHHHHHHhhccccH
Confidence 777777776666544 57899999999999999999999988 999999999999988766544
No 36
>PLN02727 NAD kinase
Probab=99.39 E-value=1.6e-12 Score=124.96 Aligned_cols=102 Identities=17% Similarity=0.261 Sum_probs=86.3
Q ss_pred ceEEcCCcChhhHHHHHHcCCcEEEEccccccc---ccccchhhhhhcCceEEEeecCCCCCCchHHHHHHHHHHHHHHH
Q psy7475 32 NIILGALPFKRLTNKLLEENVKGVVSMNEDYEL---YFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRIS 108 (295)
Q Consensus 32 ~ly~G~~~~~~~~~~L~~~gi~~Vv~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~ 108 (295)
.+|+++++.+.++++|.+.||++|||++.+.+- ......+..+..|++|+++|+.+. ..+..+.+.++.+++++.
T Consensus 262 ~~~rsgQpspe~la~LA~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~-~apt~EqVe~fa~~l~~s- 339 (986)
T PLN02727 262 AFWRGGQVTEEGLKWLLEKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVR-TAPSAEQVEKFASLVSDS- 339 (986)
T ss_pred eEEEeCCCCHHHHHHHHHCCCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCC-CCCCHHHHHHHHHHHHhh-
Confidence 689999999999999999999999999887652 111234556678999999999876 478888999888888553
Q ss_pred HcCCeEEEEcCCCCcchHHHHHHHHHHh
Q psy7475 109 KTGGTVYVHCKAGRTRSATLVGCYLMKV 136 (295)
Q Consensus 109 ~~~~~vlVHC~~G~~Rs~~~~~~~l~~~ 136 (295)
..+|||+||..|..|+|+++++|+...
T Consensus 340 -lpkPVLvHCKSGarRAGamvA~yl~~~ 366 (986)
T PLN02727 340 -SKKPIYLHSKEGVWRTSAMVSRWKQYM 366 (986)
T ss_pred -cCCCEEEECCCCCchHHHHHHHHHHHH
Confidence 358999999999999999999999987
No 37
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.33 E-value=1.3e-11 Score=90.09 Aligned_cols=107 Identities=17% Similarity=0.164 Sum_probs=79.3
Q ss_pred cccccCeEEEcCCcChhcHHHHHHcCCCEEEEcCccccc----ccccchhhhhhcCceEeeccCCCCCCCCcHHHHHHHH
Q psy7475 179 YDRIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYEL----YFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGV 254 (295)
Q Consensus 179 ~~~i~~~l~~g~~p~~~~~~~l~~~gi~~Vv~l~~~~e~----~~~~~~~~~~~~~i~~~~~p~~d~~~~~~~~~~~~~~ 254 (295)
+.+|.+.+.++++++..+++.++++|+++|||.++..|. .+....+..+..|+.|.++|+... ....+.++...
T Consensus 3 i~~I~d~lsVsgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~--~iT~~dV~~f~ 80 (130)
T COG3453 3 IRRINDRLSVSGQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGG--GITEADVEAFQ 80 (130)
T ss_pred ceecccceeecCCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCC--CCCHHHHHHHH
Confidence 356889999999999999999999999999999987765 333344556668999999999865 44555555333
Q ss_pred HHHHHHHhCCCeEEEECCCCCChHHHHHHHHHHhcCCC
Q psy7475 255 DFIQRISKTGGTVYVHCKAGRTRSATLVGCYLMKLEPV 292 (295)
Q Consensus 255 ~~i~~~~~~~~~vlVHC~~G~~Rsg~~~~ayLm~~~~~ 292 (295)
+.++ +.++|||.||+.| .||.++=..-. ...||
T Consensus 81 ~Al~---eaegPVlayCrsG-tRs~~ly~~~~-~~~gm 113 (130)
T COG3453 81 RALD---EAEGPVLAYCRSG-TRSLNLYGLGE-LDGGM 113 (130)
T ss_pred HHHH---HhCCCEEeeecCC-chHHHHHHHHH-HhcCC
Confidence 4333 4579999999999 69965544333 33444
No 38
>KOG2836|consensus
Probab=99.32 E-value=2.3e-11 Score=90.47 Aligned_cols=99 Identities=22% Similarity=0.310 Sum_probs=78.8
Q ss_pred eEEEcCCcChhc----HHHHHHcCCCEEEEcCcccccccccchhhhhhcCceEeeccCCCCCCCCcHHHHHHHHHHHHHH
Q psy7475 185 NIILGALPFKRL----TNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRI 260 (295)
Q Consensus 185 ~l~~g~~p~~~~----~~~l~~~gi~~Vv~l~~~~e~~~~~~~~~~~~~~i~~~~~p~~d~~~~~~~~~~~~~~~~i~~~ 260 (295)
.+.+..-|+... +++|+.+|+++||.+|++. +.....++.||+.+.+|++|. .+|....++..++.+...
T Consensus 18 rFLIThnPtnaTln~fieELkKygvttvVRVCe~T-----Ydt~~lek~GI~Vldw~f~dg-~ppp~qvv~~w~~l~~~~ 91 (173)
T KOG2836|consen 18 RFLITHNPTNATLNKFIEELKKYGVTTVVRVCEPT-----YDTTPLEKEGITVLDWPFDDG-APPPNQVVDDWLSLVKTK 91 (173)
T ss_pred EEEEecCCCchhHHHHHHHHHhcCCeEEEEecccc-----cCCchhhhcCceEeecccccC-CCCchHHHHHHHHHHHHH
Confidence 455566665544 5788999999999999873 344568889999999999998 578888888777766653
Q ss_pred --HhCCCeEEEECCCCCChHHHHHHHHHHhc
Q psy7475 261 --SKTGGTVYVHCKAGRTRSATLVGCYLMKL 289 (295)
Q Consensus 261 --~~~~~~vlVHC~~G~~Rsg~~~~ayLm~~ 289 (295)
...|.-|.|||.+|+||+++++|..|+..
T Consensus 92 f~e~p~~cvavhcvaglgrapvlvalalie~ 122 (173)
T KOG2836|consen 92 FREEPGCCVAVHCVAGLGRAPVLVALALIEA 122 (173)
T ss_pred HhhCCCCeEEEEeecccCcchHHHHHHHHHc
Confidence 33578899999999999999999888754
No 39
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.30 E-value=5.8e-11 Score=86.73 Aligned_cols=117 Identities=16% Similarity=0.116 Sum_probs=87.6
Q ss_pred cccccCceEEcCCcChhhHHHHHHcCCcEEEEccccccc----ccccchhhhhhcCceEEEeecCCCCCCchHHHHHHHH
Q psy7475 26 YDRIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYEL----YFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGV 101 (295)
Q Consensus 26 ~~~i~~~ly~G~~~~~~~~~~L~~~gi~~Vv~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 101 (295)
+.+|.+++++++++...|...++..|++.|||..++.+- .+.......+..|+.|.|+|+... ....+.++.+.
T Consensus 3 i~~I~d~lsVsgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~--~iT~~dV~~f~ 80 (130)
T COG3453 3 IRRINDRLSVSGQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGG--GITEADVEAFQ 80 (130)
T ss_pred ceecccceeecCCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCC--CCCHHHHHHHH
Confidence 467999999999999999999999999999999876653 333335566778999999999764 33344455444
Q ss_pred HHHHHHHHcCCeEEEEcCCCCcchHHHHHHHHHHhhccCCChHHHHHHHH
Q psy7475 102 DFIQRISKTGGTVYVHCKAGRTRSATLVGCYLMKVTSRRWYDRIDENIIL 151 (295)
Q Consensus 102 ~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~~~a~~~~~ 151 (295)
+.++++ ++|||.||+.| .||-.+...-. .. .+++.+++...=+
T Consensus 81 ~Al~ea---egPVlayCrsG-tRs~~ly~~~~-~~--~gm~~de~~a~g~ 123 (130)
T COG3453 81 RALDEA---EGPVLAYCRSG-TRSLNLYGLGE-LD--GGMSRDEIEALGQ 123 (130)
T ss_pred HHHHHh---CCCEEeeecCC-chHHHHHHHHH-Hh--cCCCHHHHHHHHH
Confidence 444443 69999999999 58876655544 33 6999998876543
No 40
>KOG1572|consensus
Probab=99.26 E-value=3e-11 Score=98.90 Aligned_cols=111 Identities=17% Similarity=0.307 Sum_probs=88.9
Q ss_pred cccccCeEEEcCCcChhcHHHHHHcCCCEEEEcCcccccccccchhhhhhcCceEeeccCCCCC-------CCCcHHHHH
Q psy7475 179 YDRIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIF-------DTPDQDKLE 251 (295)
Q Consensus 179 ~~~i~~~l~~g~~p~~~~~~~l~~~gi~~Vv~l~~~~e~~~~~~~~~~~~~~i~~~~~p~~d~~-------~~~~~~~~~ 251 (295)
|+.+.+.+|.+++|.+.++.+|+.++.++||.|+.+.. . .....++++.+|++.++.+.... .....+.+.
T Consensus 60 Fs~V~~~lyRSg~P~~~NfsFL~~L~LksIisL~pE~y-p-~~nl~f~~~~~Ik~~~i~ie~~k~~~k~P~~~~~~~~i~ 137 (249)
T KOG1572|consen 60 FSMVDNGLYRSGFPRPENFSFLKTLHLKSIISLCPEPY-P-EENLNFLESNGIKLYQIGIEGEKDNKKEPFVNIPDHSIR 137 (249)
T ss_pred ccccccceeecCCCCccchHHHHHhhhheEEEecCCCC-C-hHHHHHHHhcCceEEEEecccccccccCCCCCChHHHHH
Confidence 67788899999999999999999999999999998742 1 12334889999999999987653 122345667
Q ss_pred HHHHHHHHHHhCCCeEEEECCCCCChHHHHHHHHHHhcCCCCC
Q psy7475 252 RGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLMKLEPVPT 294 (295)
Q Consensus 252 ~~~~~i~~~~~~~~~vlVHC~~G~~Rsg~~~~ayLm~~~~~~l 294 (295)
.+++++-. ..+.|+|+||..|..|||++++|.- +-++|++
T Consensus 138 ~~l~~lld--~~N~P~Lihc~rGkhRtg~lVgclR-klq~W~l 177 (249)
T KOG1572|consen 138 KALKVLLD--KRNYPILIHCKRGKHRTGCLVGCLR-KLQNWSL 177 (249)
T ss_pred HHHHHHhc--ccCCceEEecCCCCcchhhhHHHHH-HHhccch
Confidence 67776433 3567999999999999999999988 7778875
No 41
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=99.26 E-value=2.1e-11 Score=98.05 Aligned_cols=103 Identities=16% Similarity=0.194 Sum_probs=53.9
Q ss_pred ccCe-EEEcCCcC---hhcHHHHHHcCCCEEEEcCcccccccccchhhhhhcCceEeeccCCCCCCCC---c--------
Q psy7475 182 IDEN-IILGALPF---KRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTP---D-------- 246 (295)
Q Consensus 182 i~~~-l~~g~~p~---~~~~~~l~~~gi~~Vv~l~~~~e~~~~~~~~~~~~~~i~~~~~p~~d~~~~~---~-------- 246 (295)
+.++ +|+++.+. +++.+.|.++||++||+|+.+.|.... +.....++++.++|+.+..... .
T Consensus 16 ir~g~lyRS~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~---p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~ 92 (164)
T PF13350_consen 16 IRPGRLYRSGNLSNLTEADLERLRELGIRTIIDLRSPTERERA---PDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSA 92 (164)
T ss_dssp S-TTSEEEES--TT--HHHHHHHHHTT--EEEE-S-HHHHHHH---S----TT-EEEE--SS-S-TTH----------HH
T ss_pred ecCCcEEecCCcCcCCHHHHHHHHhCCCCEEEECCCccccccC---CCCCcCCceeeeeccccccccccccccccccccc
Confidence 4444 88887664 677889999999999999999886211 2223349999999997653221 0
Q ss_pred --HHHH------------HHHHHHHHHHHhCCCeEEEECCCCCChHHHHHHHHHH
Q psy7475 247 --QDKL------------ERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLM 287 (295)
Q Consensus 247 --~~~~------------~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg~~~~ayLm 287 (295)
...+ ...-++++......+|+|+||++|++|||.++|..|.
T Consensus 93 ~~~~~~~~~Y~~~~~~~~~~~~~~~~~l~~~~~p~l~HC~aGKDRTG~~~alll~ 147 (164)
T PF13350_consen 93 DAPRGMLEFYREMLESYAEAYRKIFELLADAPGPVLFHCTAGKDRTGVVAALLLS 147 (164)
T ss_dssp HHHHHHHHHHHHGGGSTHHHHHHHHHHHH-TT--EEEE-SSSSSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHhhhHHHHHHHHHhccCCCcEEEECCCCCccHHHHHHHHHH
Confidence 0000 1122333333334479999999999999777666654
No 42
>KOG1572|consensus
Probab=99.17 E-value=2.7e-10 Score=93.39 Aligned_cols=120 Identities=18% Similarity=0.317 Sum_probs=94.3
Q ss_pred cccccCceEEcCCcChhhHHHHHHcCCcEEEEcccccccccccchhhhhhcCceEEEeecCCCCC---Cc----hHHHHH
Q psy7475 26 YDRIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFD---TP----DQDKLE 98 (295)
Q Consensus 26 ~~~i~~~ly~G~~~~~~~~~~L~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~---~~----~~~~~~ 98 (295)
++-|.++||.|++|.+.+..+|+.++.+.||.++.+.+. -. .....+.++|++.++.+....+ .| ..+.+.
T Consensus 60 Fs~V~~~lyRSg~P~~~NfsFL~~L~LksIisL~pE~yp-~~-nl~f~~~~~Ik~~~i~ie~~k~~~k~P~~~~~~~~i~ 137 (249)
T KOG1572|consen 60 FSMVDNGLYRSGFPRPENFSFLKTLHLKSIISLCPEPYP-EE-NLNFLESNGIKLYQIGIEGEKDNKKEPFVNIPDHSIR 137 (249)
T ss_pred ccccccceeecCCCCccchHHHHHhhhheEEEecCCCCC-hH-HHHHHHhcCceEEEEecccccccccCCCCCChHHHHH
Confidence 677889999999999999999999999999999998652 11 1236788999999999875531 22 244577
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCCcchHHHHHHHHHHhhccCCChHHHHHHHHh
Q psy7475 99 RGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLMKVTSRRWYDRIDENIILG 152 (295)
Q Consensus 99 ~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~~~a~~~~~~ 152 (295)
.+++++-.. .+.|+|+||..|..|+|++++|.- +. ++|+..-.++..+.
T Consensus 138 ~~l~~lld~--~N~P~Lihc~rGkhRtg~lVgclR-kl--q~W~lssil~Ey~~ 186 (249)
T KOG1572|consen 138 KALKVLLDK--RNYPILIHCKRGKHRTGCLVGCLR-KL--QNWSLSSILDEYLR 186 (249)
T ss_pred HHHHHHhcc--cCCceEEecCCCCcchhhhHHHHH-HH--hccchhHHHHHHHH
Confidence 777775544 456999999999999999999977 55 68998877765543
No 43
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=99.14 E-value=2.2e-10 Score=84.56 Aligned_cols=82 Identities=18% Similarity=0.124 Sum_probs=62.6
Q ss_pred eEEEeecCCCCCCch-HHHHHHHHHHHHHHHH---cCCeEEEEcCCCCcchHHHHHHHHHHhhc----cCCChHHHHHHH
Q psy7475 79 EFLQLSTRDIFDTPD-QDKLERGVDFIQRISK---TGGTVYVHCKAGRTRSATLVGCYLMKVTS----RRWYDRIDENII 150 (295)
Q Consensus 79 ~~~~~~~~D~~~~~~-~~~~~~~~~~i~~~~~---~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~----~~~~~~~a~~~~ 150 (295)
.|++.+|+|.. .|. .+.+.++++.+.+..+ .++||+|||.+|.||||++++++++..+. ...+..+++..+
T Consensus 4 ~~~~~~Wpd~~-~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (105)
T smart00404 4 HYHYTGWPDHG-VPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKEL 82 (105)
T ss_pred EEeeCCCCCCC-CCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 56778888874 443 3677777777777654 36899999999999999999999997722 135777888889
Q ss_pred HhcCCcccCCC
Q psy7475 151 LGALPFKRLTN 161 (295)
Q Consensus 151 ~~~rp~~~~~~ 161 (295)
|+.||....+.
T Consensus 83 r~~r~~~~~~~ 93 (105)
T smart00404 83 RKQRPGMVQTF 93 (105)
T ss_pred HhhhhhhCCcH
Confidence 98888766553
No 44
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=99.14 E-value=2.2e-10 Score=84.56 Aligned_cols=82 Identities=18% Similarity=0.124 Sum_probs=62.6
Q ss_pred eEEEeecCCCCCCch-HHHHHHHHHHHHHHHH---cCCeEEEEcCCCCcchHHHHHHHHHHhhc----cCCChHHHHHHH
Q psy7475 79 EFLQLSTRDIFDTPD-QDKLERGVDFIQRISK---TGGTVYVHCKAGRTRSATLVGCYLMKVTS----RRWYDRIDENII 150 (295)
Q Consensus 79 ~~~~~~~~D~~~~~~-~~~~~~~~~~i~~~~~---~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~----~~~~~~~a~~~~ 150 (295)
.|++.+|+|.. .|. .+.+.++++.+.+..+ .++||+|||.+|.||||++++++++..+. ...+..+++..+
T Consensus 4 ~~~~~~Wpd~~-~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (105)
T smart00012 4 HYHYTGWPDHG-VPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKEL 82 (105)
T ss_pred EEeeCCCCCCC-CCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 56778888874 443 3677777777777654 36899999999999999999999997722 135777888889
Q ss_pred HhcCCcccCCC
Q psy7475 151 LGALPFKRLTN 161 (295)
Q Consensus 151 ~~~rp~~~~~~ 161 (295)
|+.||....+.
T Consensus 83 r~~r~~~~~~~ 93 (105)
T smart00012 83 RKQRPGMVQTF 93 (105)
T ss_pred HhhhhhhCCcH
Confidence 98888766553
No 45
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=99.10 E-value=6.3e-10 Score=89.43 Aligned_cols=115 Identities=14% Similarity=0.107 Sum_probs=62.6
Q ss_pred ccCc-eEEcCCcC---hhhHHHHHHcCCcEEEEcccccccccccchhhhhhcCceEEEeecCCCCCCc---hH-------
Q psy7475 29 IDEN-IILGALPF---KRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTP---DQ------- 94 (295)
Q Consensus 29 i~~~-ly~G~~~~---~~~~~~L~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~---~~------- 94 (295)
|-++ ||.++.+. ..|.+.|.++||++||+++...+... .+.....|++++++|+.+..... +.
T Consensus 16 ir~g~lyRS~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~---~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~ 92 (164)
T PF13350_consen 16 IRPGRLYRSGNLSNLTEADLERLRELGIRTIIDLRSPTERER---APDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSA 92 (164)
T ss_dssp S-TTSEEEES--TT--HHHHHHHHHTT--EEEE-S-HHHHHH---HS----TT-EEEE--SS-S-TTH----------HH
T ss_pred ecCCcEEecCCcCcCCHHHHHHHHhCCCCEEEECCCcccccc---CCCCCcCCceeeeeccccccccccccccccccccc
Confidence 4444 89998866 57788999999999999998877311 12233459999999998765331 00
Q ss_pred ---HH------------HHHHHHHHHHHHHcCCeEEEEcCCCCcchHHHHHHHHHHhhccCCChHHHHHH
Q psy7475 95 ---DK------------LERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLMKVTSRRWYDRIDENI 149 (295)
Q Consensus 95 ---~~------------~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~~~a~~~ 149 (295)
.. -+.+.+++....+..+|+|+||++|+.|||.+++..|... |.+.+++...
T Consensus 93 ~~~~~~~~~Y~~~~~~~~~~~~~~~~~l~~~~~p~l~HC~aGKDRTG~~~alll~~l---GV~~~~I~~D 159 (164)
T PF13350_consen 93 DAPRGMLEFYREMLESYAEAYRKIFELLADAPGPVLFHCTAGKDRTGVVAALLLSLL---GVPDEDIIAD 159 (164)
T ss_dssp HHHHHHHHHHHHGGGSTHHHHHHHHHHHH-TT--EEEE-SSSSSHHHHHHHHHHHHT---T--HHHHHHH
T ss_pred chhhHHHHHHHHHHHhhhHHHHHHHHHhccCCCcEEEECCCCCccHHHHHHHHHHHc---CCCHHHHHHH
Confidence 00 0111122222233457999999999999999988877766 9888887654
No 46
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=99.07 E-value=1.1e-09 Score=99.81 Aligned_cols=107 Identities=20% Similarity=0.300 Sum_probs=66.3
Q ss_pred eEEEcCCcCh------hcHHHHHHcCCCEEEEcCcccccccccchhhhhh------------------------------
Q psy7475 185 NIILGALPFK------RLTNKLLEENVKGVVSMNEDYELYFANGREEWNK------------------------------ 228 (295)
Q Consensus 185 ~l~~g~~p~~------~~~~~l~~~gi~~Vv~l~~~~e~~~~~~~~~~~~------------------------------ 228 (295)
..+.|..|.. ..|.++++.++..||.|+...|..-..+.++|..
T Consensus 335 ~aIa~QYP~nt~eTieDFWrMVWEn~~~VIVMLT~l~E~g~~KC~pYW~~s~tYGdItVts~seesls~g~iIR~f~L~I 414 (535)
T PRK15375 335 VALAGSYPKNTPDALEAHMKMLLEKECSCLVVLTSEDQMQAKQLPPYFRGSYTFGEVHTNSQKVSSASQGEAIDQYNMQL 414 (535)
T ss_pred ceEeccCCCCchhhHHHHHHHHHHcCCCEEEEeeccccCcccccCccCCCcceeccEEEEEEEEEeccCCceEEEEEEEE
Confidence 4566778833 3468888999999999988655311122222111
Q ss_pred ----c--CceEeecc-CCCCCCCCcHHHHHHHHHHHHHHHhCC---------CeEEEECCCCCChHHHHHHHHHHhcCC
Q psy7475 229 ----V--GVEFLQLS-TRDIFDTPDQDKLERGVDFIQRISKTG---------GTVYVHCKAGRTRSATLVGCYLMKLEP 291 (295)
Q Consensus 229 ----~--~i~~~~~p-~~d~~~~~~~~~~~~~~~~i~~~~~~~---------~~vlVHC~~G~~Rsg~~~~ayLm~~~~ 291 (295)
. .+.++|+. ++|...++..+.+.++++.+......+ ++.+|||++|+||||+|||+++|+..+
T Consensus 415 k~~E~R~tV~QFHyTnWPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRTGTFIAi~llk~~~ 493 (535)
T PRK15375 415 SCGEKRYTIPVLHVKNWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKDNP 493 (535)
T ss_pred ecCCceeEEEEEEeCCCCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchHHHHHHHHHHhccc
Confidence 1 12233332 455543455566776666666543211 234799999999999999999997654
No 47
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=99.04 E-value=1e-09 Score=93.29 Aligned_cols=106 Identities=20% Similarity=0.238 Sum_probs=67.2
Q ss_pred CeEEEcCCcChhcHH----HHHHcCCCEEEEcCcccccccccchhhhhh-------------------------------
Q psy7475 184 ENIILGALPFKRLTN----KLLEENVKGVVSMNEDYELYFANGREEWNK------------------------------- 228 (295)
Q Consensus 184 ~~l~~g~~p~~~~~~----~l~~~gi~~Vv~l~~~~e~~~~~~~~~~~~------------------------------- 228 (295)
...+++..|...+.+ .+++.+++.||.|++..|.....+.++|+.
T Consensus 41 ~~fI~tQ~P~~~t~~~FW~mv~~~~~~~IV~l~~~~e~~~~~~~~Ywp~~~~~~~~g~~~V~~~~~~~~~~~~~~~l~i~ 120 (231)
T cd00047 41 KAYIATQGPLPNTVEDFWRMVWEQKVPVIVMLTELVEKGREKCAQYWPEEEGSLTYGDITVTLVSEEKLDDYTVRTLKLS 120 (231)
T ss_pred cceEEcCCCChhhHHHHHHHHHhcCCCEEEEccccccCCCccCccCCCCCCCCeEecCEEEEEEEEEEcCCEEEEEEEEE
Confidence 456778888776654 455689999999988655211112222222
Q ss_pred -------cCceEeecc-CCCCCCCCcHHHHHHHHHHHHHHHh--CCCeEEEECCCCCChHHHHHHHHHHhc
Q psy7475 229 -------VGVEFLQLS-TRDIFDTPDQDKLERGVDFIQRISK--TGGTVYVHCKAGRTRSATLVGCYLMKL 289 (295)
Q Consensus 229 -------~~i~~~~~p-~~d~~~~~~~~~~~~~~~~i~~~~~--~~~~vlVHC~~G~~Rsg~~~~ayLm~~ 289 (295)
..+.++++. ++|...++..+.+..+++.++.... .++||+|||.+|.||||++||++++..
T Consensus 121 ~~~~~~~~~V~~~~~~~W~d~~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~ 191 (231)
T cd00047 121 NTGTGETRTVTHFQYTGWPDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQ 191 (231)
T ss_pred ECCCCCceEEEEEeECCCCCCCccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHH
Confidence 112233222 3444333444666666666666542 468999999999999999999998754
No 48
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=99.04 E-value=7.8e-10 Score=95.58 Aligned_cols=105 Identities=19% Similarity=0.203 Sum_probs=64.9
Q ss_pred eEEEcCCcChhcH----HHHHHcCCCEEEEcCcccccccccchhhhhhc-------------------------------
Q psy7475 185 NIILGALPFKRLT----NKLLEENVKGVVSMNEDYELYFANGREEWNKV------------------------------- 229 (295)
Q Consensus 185 ~l~~g~~p~~~~~----~~l~~~gi~~Vv~l~~~~e~~~~~~~~~~~~~------------------------------- 229 (295)
..++...|...+. .++++.+++.||.|++..|.....+.++|+..
T Consensus 70 ~fI~tQ~P~~~t~~dFW~mv~~~~~~~IVmL~~~~e~~~~~~~~Ywp~~~~~~~~g~~~V~~~~~~~~~~~~~~~l~v~~ 149 (258)
T smart00194 70 AYIATQGPLPSTVEDFWRMVWEEKVTTIVMLTELEEKGREKCAQYWPEEEEPLTYGDITVTLKSVEKVDDYTIRTLEVTN 149 (258)
T ss_pred ceEEeCCCchHHHHHHHHHHHhcCCCEEEEeccceeCCEeeccccCCCCCCcceECCEEEEEEEEEecCCEEEEEEEEEE
Confidence 4666778877665 45556999999999887653111122222220
Q ss_pred -----CceEeec---cCCCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEECCCCCChHHHHHHHHHHhc
Q psy7475 230 -----GVEFLQL---STRDIFDTPDQDKLERGVDFIQRISKT-GGTVYVHCKAGRTRSATLVGCYLMKL 289 (295)
Q Consensus 230 -----~i~~~~~---p~~d~~~~~~~~~~~~~~~~i~~~~~~-~~~vlVHC~~G~~Rsg~~~~ayLm~~ 289 (295)
.....|+ .++|...+...+.+.++++.++..... ++||+|||.+|+||||++||++++..
T Consensus 150 ~~~~~~~~v~~~~y~~W~d~~~P~~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~ 218 (258)
T smart00194 150 TGCSETRTVTHYHYTNWPDHGVPESPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQ 218 (258)
T ss_pred CCCCCcEEEEEEeeCCCCCCCCCCCHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHH
Confidence 1112222 233442233445666666666655443 68999999999999999999998753
No 49
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=99.01 E-value=9.6e-10 Score=81.12 Aligned_cols=58 Identities=21% Similarity=0.218 Sum_probs=42.2
Q ss_pred eeccCCCCCCCCcHHHHHHHHHHHHHHHh---CCCeEEEECCCCCChHHHHHHHHHHhcCC
Q psy7475 234 LQLSTRDIFDTPDQDKLERGVDFIQRISK---TGGTVYVHCKAGRTRSATLVGCYLMKLEP 291 (295)
Q Consensus 234 ~~~p~~d~~~~~~~~~~~~~~~~i~~~~~---~~~~vlVHC~~G~~Rsg~~~~ayLm~~~~ 291 (295)
...+++|...+...+.+.++++.++...+ .++||+|||.+|+||||+++++|++..+.
T Consensus 6 ~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~ 66 (105)
T smart00012 6 HYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQL 66 (105)
T ss_pred eeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHH
Confidence 33444455334444677777777776554 36899999999999999999999997643
No 50
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=99.01 E-value=9.6e-10 Score=81.12 Aligned_cols=58 Identities=21% Similarity=0.218 Sum_probs=42.2
Q ss_pred eeccCCCCCCCCcHHHHHHHHHHHHHHHh---CCCeEEEECCCCCChHHHHHHHHHHhcCC
Q psy7475 234 LQLSTRDIFDTPDQDKLERGVDFIQRISK---TGGTVYVHCKAGRTRSATLVGCYLMKLEP 291 (295)
Q Consensus 234 ~~~p~~d~~~~~~~~~~~~~~~~i~~~~~---~~~~vlVHC~~G~~Rsg~~~~ayLm~~~~ 291 (295)
...+++|...+...+.+.++++.++...+ .++||+|||.+|+||||+++++|++..+.
T Consensus 6 ~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~ 66 (105)
T smart00404 6 HYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQL 66 (105)
T ss_pred eeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHH
Confidence 33444455334444677777777776554 36899999999999999999999997643
No 51
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=98.99 E-value=1.9e-09 Score=95.10 Aligned_cols=104 Identities=15% Similarity=0.176 Sum_probs=62.3
Q ss_pred eEEEcCCcChhcHHH----HHHcCCCEEEEcCcccccccccchhhhhhc-------------------------------
Q psy7475 185 NIILGALPFKRLTNK----LLEENVKGVVSMNEDYELYFANGREEWNKV------------------------------- 229 (295)
Q Consensus 185 ~l~~g~~p~~~~~~~----l~~~gi~~Vv~l~~~~e~~~~~~~~~~~~~------------------------------- 229 (295)
..++...|.+.+... +++.++..||+|+...|.+...+.++|+..
T Consensus 94 ~fIatQ~Pl~~T~~dFW~MVw~~~~~vIVmLt~~~E~g~~kc~~YWp~~~~~~~~~g~~~V~~~~~~~~~~~~~~~l~l~ 173 (303)
T PHA02742 94 RFICTQAPLEETALDFWQAIFQDQVRVIVMITKIMEDGKEACYPYWMPHERGKATHGEFKIKTKKIKSFRNYAVTNLCLT 173 (303)
T ss_pred eEEEECCCCcccHHHHHHHHhhcCCCeEEEcchhhhCCeeeccccCCCCCCCceEEEEEEEEEEEEEEcCCEEEEEEEEE
Confidence 466677887776544 556999999999886553222233333210
Q ss_pred ----C--ceEeec---cCCCCCCCCcHHHHHHHHHHHHHHHh------------CCCeEEEECCCCCChHHHHHHHHHHh
Q psy7475 230 ----G--VEFLQL---STRDIFDTPDQDKLERGVDFIQRISK------------TGGTVYVHCKAGRTRSATLVGCYLMK 288 (295)
Q Consensus 230 ----~--i~~~~~---p~~d~~~~~~~~~~~~~~~~i~~~~~------------~~~~vlVHC~~G~~Rsg~~~~ayLm~ 288 (295)
+ ....|+ .++|.+.+.....+.+++..+++... ..+||+|||.+|+||||+|||...+.
T Consensus 174 ~~~~~~~r~V~h~~y~~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtF~aid~~i 253 (303)
T PHA02742 174 DTNTGASLDIKHFAYEDWPHGGLPRDPNKFLDFVLAVREADLKADVDIKGENIVKEPPILVHCSAGLDRAGAFCAIDICI 253 (303)
T ss_pred ECCCCceEEEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEECCCCCchhHHHHHHHHHH
Confidence 0 012222 23344333344555555554444211 13799999999999999999987765
No 52
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=98.94 E-value=4.7e-09 Score=92.07 Aligned_cols=101 Identities=12% Similarity=0.056 Sum_probs=58.9
Q ss_pred eEEEcCCcChhcH----HHHHHcCCCEEEEcCcccccccccch-hhhhh-------------------------------
Q psy7475 185 NIILGALPFKRLT----NKLLEENVKGVVSMNEDYELYFANGR-EEWNK------------------------------- 228 (295)
Q Consensus 185 ~l~~g~~p~~~~~----~~l~~~gi~~Vv~l~~~~e~~~~~~~-~~~~~------------------------------- 228 (295)
..+....|.+.+. .+.++.++..||+|+...|. .+. ++|+.
T Consensus 92 ~fIaTQ~Pl~~T~~dFW~MVwe~~~~iIVMLt~~~e~---kc~~~YWP~~~~~~~~~g~f~V~~~~~~~~~~~~~~~l~l 168 (298)
T PHA02740 92 KFICIINLCEDACDKFLQALSDNKVQIIVLISRHADK---KCFNQFWSLKEGCVITSDKFQIETLEIIIKPHFNLTLLSL 168 (298)
T ss_pred cEEEecCCchhhHHHHHHHHHhcCCCEEEEccccccc---cccccCCCCCCCCeEEECCEEEEEEEEEecCCEEEEEEEE
Confidence 3555667776665 55566999999999876543 111 22221
Q ss_pred -----cCceEeecc---CCCCCCCCcHHHHHHHHHHHHHHH---------hCCCeEEEECCCCCChHHHHHHHHHHh
Q psy7475 229 -----VGVEFLQLS---TRDIFDTPDQDKLERGVDFIQRIS---------KTGGTVYVHCKAGRTRSATLVGCYLMK 288 (295)
Q Consensus 229 -----~~i~~~~~p---~~d~~~~~~~~~~~~~~~~i~~~~---------~~~~~vlVHC~~G~~Rsg~~~~ayLm~ 288 (295)
......|+. ++|.+.+.....+..++..+++.. ...+||+|||++|+||||+|||.-.+.
T Consensus 169 ~~~~~~~r~V~Hfqyt~WPd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~PIVVHCSaGvGRTGtFcaiDi~l 245 (298)
T PHA02740 169 TDKFGQAQKISHFQYTAWPADGFSHDPDAFIDFFCNIDDLCADLEKHKADGKIAPIIIDCIDGISSSAVFCVFDICA 245 (298)
T ss_pred EcCCCCcEEEEEEeecCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEECCCCCchhHHHHHHHHHH
Confidence 011222222 233322333444444444343321 124799999999999999999987664
No 53
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=98.92 E-value=5.5e-09 Score=92.45 Aligned_cols=104 Identities=13% Similarity=0.118 Sum_probs=62.4
Q ss_pred eEEEcCCcChhcHHH----HHHcCCCEEEEcCccc-ccccccchhhhhh-------------------------------
Q psy7475 185 NIILGALPFKRLTNK----LLEENVKGVVSMNEDY-ELYFANGREEWNK------------------------------- 228 (295)
Q Consensus 185 ~l~~g~~p~~~~~~~----l~~~gi~~Vv~l~~~~-e~~~~~~~~~~~~------------------------------- 228 (295)
..++...|.+.+.+. +++.++..||+|+... |.+...+.++|+.
T Consensus 94 ~yIaTQ~Pl~~T~~dFW~MVwe~~~~~IVMLt~~~~e~g~~kc~~YWp~~~~~~~~~g~~~V~~~~~~~~~~~~~~~l~l 173 (312)
T PHA02747 94 KFIATQGPFAETCADFWKAVWQEHCSIIVMLTPTKGTNGEEKCYQYWCLNEDGNIDMEDFRIETLKTSVRAKYILTLIEI 173 (312)
T ss_pred eEEEeCCCcchhHHHHHHHHHhccCCEEEEcccccccCCcccccccCCCCCCCCeEeeeEEEEEEEEEecCCeEEEEEEE
Confidence 466667787776555 5568999999998866 3222223333421
Q ss_pred ------cCceEeec---cCCCCCCCCcHHHHHHHHHHHHHHHh-----------CCCeEEEECCCCCChHHHHHHHHHHh
Q psy7475 229 ------VGVEFLQL---STRDIFDTPDQDKLERGVDFIQRISK-----------TGGTVYVHCKAGRTRSATLVGCYLMK 288 (295)
Q Consensus 229 ------~~i~~~~~---p~~d~~~~~~~~~~~~~~~~i~~~~~-----------~~~~vlVHC~~G~~Rsg~~~~ayLm~ 288 (295)
......|+ .++|...+.....+.+++..++...+ ..+||+|||.+|+||||+|||.-.+.
T Consensus 174 ~~~~~~~~r~V~h~~y~~Wpd~~~P~~~~~~l~fi~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRtGtfcaidi~i 253 (312)
T PHA02747 174 TDKILKDSRKISHFQCSEWFEDETPSDHPDFIKFIKIIDINRKKSGKLFNPKDALLCPIVVHCSDGVGKTGIFCAVDICL 253 (312)
T ss_pred EECCCCCceEEEEEEECCCCCCCCCCChHHHHHHHHHHHHHHHHhhccccccccCCCCEEEEecCCCcchhHHHHHHHHH
Confidence 00112222 23343223344555555555554322 12799999999999999999987654
No 54
>PHA02738 hypothetical protein; Provisional
Probab=98.91 E-value=4.5e-09 Score=93.26 Aligned_cols=105 Identities=17% Similarity=0.153 Sum_probs=62.8
Q ss_pred CeEEEcCCcChhcHH----HHHHcCCCEEEEcCcccccccccchhhhhh-------------------------------
Q psy7475 184 ENIILGALPFKRLTN----KLLEENVKGVVSMNEDYELYFANGREEWNK------------------------------- 228 (295)
Q Consensus 184 ~~l~~g~~p~~~~~~----~l~~~gi~~Vv~l~~~~e~~~~~~~~~~~~------------------------------- 228 (295)
...++...|...+.+ ++++.++..||.|++..|.+...+.++|+.
T Consensus 90 ~kfI~TQ~Pl~~T~~dFW~MVwe~~v~~IVmL~~~~E~~~~kc~~YWp~~~~~~~~~g~f~V~~~~~~~~~~~~~~~l~l 169 (320)
T PHA02738 90 KKFICGQAPTRQTCYDFYRMLWMEHVQIIVMLCKKKENGREKCFPYWSDVEQGSIRFGKFKITTTQVETHPHYVKSTLLL 169 (320)
T ss_pred ceeEEecCCChHHHHHHHHHHHHhCCcEEEEeeehhhCCeeeccccCCCCCCCceEeccEEEEEEEEEecCCeEEEEEEE
Confidence 346677788776654 455699999999998665322222233321
Q ss_pred -----cCceEeec---cCCCCCCCCcHHHHHHHHHHHHHHHh--------------CCCeEEEECCCCCChHHHHHHHHH
Q psy7475 229 -----VGVEFLQL---STRDIFDTPDQDKLERGVDFIQRISK--------------TGGTVYVHCKAGRTRSATLVGCYL 286 (295)
Q Consensus 229 -----~~i~~~~~---p~~d~~~~~~~~~~~~~~~~i~~~~~--------------~~~~vlVHC~~G~~Rsg~~~~ayL 286 (295)
......|+ .++|...+.....+.+++..+++..+ ..+||+|||.+|+||||+|||.-.
T Consensus 170 ~~~~~~~r~V~h~~y~~Wpd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~~~~~~PIVVHCs~GiGRtGtFcaidi 249 (320)
T PHA02738 170 TDGTSATQTVTHFNFTAWPDHDVPKNTSEFLNFVLEVRQCQKELAQESLQIGHNRLQPPPIVVHCNAGLGRTPCYCVVDI 249 (320)
T ss_pred EeCCCCcEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhhhcccCccccCCCCeEEEcCCCCChhhhhhHHHH
Confidence 00112222 23344333344555555555554321 137999999999999999999876
Q ss_pred Hh
Q psy7475 287 MK 288 (295)
Q Consensus 287 m~ 288 (295)
+.
T Consensus 250 ~i 251 (320)
T PHA02738 250 SI 251 (320)
T ss_pred HH
Confidence 54
No 55
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=98.87 E-value=7.8e-09 Score=91.87 Aligned_cols=103 Identities=17% Similarity=0.150 Sum_probs=59.2
Q ss_pred eEEEcCCcChhcH----HHHHHcCCCEEEEcCcccccccccchhhhhh--------------------------------
Q psy7475 185 NIILGALPFKRLT----NKLLEENVKGVVSMNEDYELYFANGREEWNK-------------------------------- 228 (295)
Q Consensus 185 ~l~~g~~p~~~~~----~~l~~~gi~~Vv~l~~~~e~~~~~~~~~~~~-------------------------------- 228 (295)
..++...|.+... .++++.++..||+|++..+. ...+.++|+.
T Consensus 114 ~fIaTQ~Pl~~T~~dFW~MIwe~~v~vIVMLt~~~e~-~~kc~~YWP~~~~~~~~~g~~~V~~~~~~~~~~~~~~~l~l~ 192 (323)
T PHA02746 114 KFICAQGPKEDTSEDFFKLISEHESQVIVSLTDIDDD-DEKCFELWTKEEDSELAFGRFVAKILDIIEELSFTKTRLMIT 192 (323)
T ss_pred eEEEeCCCChhhHHHHHHHHHhhCCCEEEEecccccC-CccCCCCCCCCCCCCeEEcCEEEEEEEEEEcCCeEEEEEEEE
Confidence 4556677877665 55556999999999875331 0112222221
Q ss_pred -----cCceEeeccC---CCCCCCCcHHHHHHHHHHHHHHHh--------C---CCeEEEECCCCCChHHHHHHHHHHh
Q psy7475 229 -----VGVEFLQLST---RDIFDTPDQDKLERGVDFIQRISK--------T---GGTVYVHCKAGRTRSATLVGCYLMK 288 (295)
Q Consensus 229 -----~~i~~~~~p~---~d~~~~~~~~~~~~~~~~i~~~~~--------~---~~~vlVHC~~G~~Rsg~~~~ayLm~ 288 (295)
...+..|+.. +|...+.....+.++++.+++... . .+||+|||.+|+||||+|||...+.
T Consensus 193 ~~~~~~~r~V~h~~y~~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtfcaid~~l 271 (323)
T PHA02746 193 DKISDTSREIHHFWFPDWPDNGIPTGMAEFLELINKVNEEQAELIKQADNDPQTLGPIVVHCSAGIGRAGTFCAIDNAL 271 (323)
T ss_pred ECCCCCceEEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCEEEEcCCCCCcchhHHHHHHHH
Confidence 0112333322 333223334455555554444321 1 2799999999999999999986653
No 56
>KOG0792|consensus
Probab=98.84 E-value=1e-08 Score=99.49 Aligned_cols=104 Identities=17% Similarity=0.242 Sum_probs=65.4
Q ss_pred CeEEEc-CCcChh----cHHHHHHcCCCEEEEcCcccccccccchhhhhhcC--------------------------c-
Q psy7475 184 ENIILG-ALPFKR----LTNKLLEENVKGVVSMNEDYELYFANGREEWNKVG--------------------------V- 231 (295)
Q Consensus 184 ~~l~~g-~~p~~~----~~~~l~~~gi~~Vv~l~~~~e~~~~~~~~~~~~~~--------------------------i- 231 (295)
.+.||. ..|.+. -|++.|+.|++.|+.|+.+.|.+-..+-.+|+..| +
T Consensus 937 e~~YIA~QGPLp~T~~DFWQMVWEQ~~~lIvMlT~e~EggR~KchqYWPr~~~~t~~ygrf~v~~~~~~~t~~y~tr~m~ 1016 (1144)
T KOG0792|consen 937 ENRYIACQGPLPHTCTDFWQMVWEQGSTLIVMLTTEVEGGRVKCHQYWPRLGHETMEYGRFQVTCVFEQQTTCYVTREMT 1016 (1144)
T ss_pred eEEEEEecCCCcchHHHHHHHHHhcCceEEEEEeehhhcCeeccccccCCCCccceeccceEEEEEEecccccEEEEeEE
Confidence 455553 344433 36888889999999999988753334444454421 1
Q ss_pred ----------eEeecc---CCCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEECCCCCChHHHHHHHHHH
Q psy7475 232 ----------EFLQLS---TRDIFDTPDQDKLERGVDFIQRISKT-GGTVYVHCKAGRTRSATLVGCYLM 287 (295)
Q Consensus 232 ----------~~~~~p---~~d~~~~~~~~~~~~~~~~i~~~~~~-~~~vlVHC~~G~~Rsg~~~~ayLm 287 (295)
+..|+. ++|.+.+.....|..+++.|...+.. +-||+|||.+|+||||+++.+=+|
T Consensus 1017 l~~~~t~eeR~V~hLQYtaWPDHg~P~D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~ 1086 (1144)
T KOG0792|consen 1017 LKDLQTREERTVWHLQYTAWPDHGVPDDPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETA 1086 (1144)
T ss_pred EeeccCCceeeeeeeeecccccCCCCCChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHH
Confidence 112222 23333344455666666666666555 569999999999999999876544
No 57
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=98.84 E-value=4.5e-09 Score=82.90 Aligned_cols=66 Identities=21% Similarity=0.464 Sum_probs=50.7
Q ss_pred cchhhhhhcCceEeeccCCCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEECCCCCChHHHHHHHHHHh
Q psy7475 221 NGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLMK 288 (295)
Q Consensus 221 ~~~~~~~~~~i~~~~~p~~d~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg~~~~ayLm~ 288 (295)
.+....+..|+.|..+|+.|. ..|..+.|+++++++.+. -++..+.+||.+|.|||.++.+.|.|.
T Consensus 83 ~e~~~~~~~g~~Y~Ripitd~-~~P~~~~iD~fi~~v~~~-p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 83 TEEELVEGNGLRYYRIPITDH-QAPDPEDIDAFINFVKSL-PKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp -HHHHHHHTT-EEEEEEE-TT-S---HHHHHHHHHHHHTS--TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCceEEEEeCCCc-CCCCHHHHHHHHHHHHhC-CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 334567778999999999998 699999999999999998 557899999999999999999999885
No 58
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=98.83 E-value=1e-08 Score=87.10 Aligned_cols=79 Identities=16% Similarity=0.098 Sum_probs=58.5
Q ss_pred eecCCCCCCchHHHHHHHHHHHHHHHH--cCCeEEEEcCCCCcchHHHHHHHHHHh---hccCCChHHHHHHHHhcCCcc
Q psy7475 83 LSTRDIFDTPDQDKLERGVDFIQRISK--TGGTVYVHCKAGRTRSATLVGCYLMKV---TSRRWYDRIDENIILGALPFK 157 (295)
Q Consensus 83 ~~~~D~~~~~~~~~~~~~~~~i~~~~~--~~~~vlVHC~~G~~Rs~~~~~~~l~~~---~~~~~~~~~a~~~~~~~rp~~ 157 (295)
..|+|....+....+.++++.+.+... .++||+|||.+|.||||++++++++.. .....++.+++..+|+.|+..
T Consensus 136 ~~W~d~~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~~iR~~R~~~ 215 (231)
T cd00047 136 TGWPDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKELRSQRPGM 215 (231)
T ss_pred CCCCCCCccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHHHHHhccccc
Confidence 347776433333566666666666542 468999999999999999999988755 113689999999999999977
Q ss_pred cCCC
Q psy7475 158 RLTN 161 (295)
Q Consensus 158 ~~~~ 161 (295)
..+.
T Consensus 216 v~~~ 219 (231)
T cd00047 216 VQTE 219 (231)
T ss_pred cCCH
Confidence 6553
No 59
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=98.81 E-value=1.3e-08 Score=87.95 Aligned_cols=82 Identities=17% Similarity=0.150 Sum_probs=60.1
Q ss_pred EEEeecCCCCCCc-hHHHHHHHHHHHHHHHHc-CCeEEEEcCCCCcchHHHHHHHHHHh---hccCCChHHHHHHHHhcC
Q psy7475 80 FLQLSTRDIFDTP-DQDKLERGVDFIQRISKT-GGTVYVHCKAGRTRSATLVGCYLMKV---TSRRWYDRIDENIILGAL 154 (295)
Q Consensus 80 ~~~~~~~D~~~~~-~~~~~~~~~~~i~~~~~~-~~~vlVHC~~G~~Rs~~~~~~~l~~~---~~~~~~~~~a~~~~~~~r 154 (295)
|+...|+|.. .| ....+.++++.+...... ++||+|||.+|.||||++++++++.. .....+..+++..+|+.|
T Consensus 161 ~~y~~W~d~~-~P~~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~lR~~R 239 (258)
T smart00194 161 YHYTNWPDHG-VPESPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELRSQR 239 (258)
T ss_pred EeeCCCCCCC-CCCCHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHHHHhcc
Confidence 3344577774 44 445566666666655443 68999999999999999999987643 224678999999999999
Q ss_pred CcccCCCc
Q psy7475 155 PFKRLTNK 162 (295)
Q Consensus 155 p~~~~~~~ 162 (295)
+....+..
T Consensus 240 ~~~v~~~~ 247 (258)
T smart00194 240 PGMVQTEE 247 (258)
T ss_pred ccccCCHH
Confidence 98776543
No 60
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=98.72 E-value=5.9e-08 Score=88.59 Aligned_cols=77 Identities=17% Similarity=0.143 Sum_probs=55.7
Q ss_pred eEEEeecCCCCCCchHHHHHHHHHHHHHHHHcC---------CeEEEEcCCCCcchHHHHHHHHHHhhccCCChHHHHHH
Q psy7475 79 EFLQLSTRDIFDTPDQDKLERGVDFIQRISKTG---------GTVYVHCKAGRTRSATLVGCYLMKVTSRRWYDRIDENI 149 (295)
Q Consensus 79 ~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~---------~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~~~a~~~ 149 (295)
+|++..|+|+...+....+.++++.+......+ .+.+|||++|+||||++++++++.. ....+.++++..
T Consensus 425 QFHyTnWPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRTGTFIAi~llk~-~~~~sle~IV~d 503 (535)
T PRK15375 425 VLHVKNWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKD-NPHSNLEQVRAD 503 (535)
T ss_pred EEEeCCCCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchHHHHHHHHHHhc-cccCCHHHHHHH
Confidence 445556888864445555766777776653221 2237999999999999999999875 245688999999
Q ss_pred HHhcCCc
Q psy7475 150 ILGALPF 156 (295)
Q Consensus 150 ~~~~rp~ 156 (295)
+|..|+.
T Consensus 504 lR~qRng 510 (535)
T PRK15375 504 FRNSRNN 510 (535)
T ss_pred HHhcCCc
Confidence 9888886
No 61
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=98.72 E-value=3.4e-08 Score=77.91 Aligned_cols=65 Identities=22% Similarity=0.469 Sum_probs=50.9
Q ss_pred chhhhhhcCceEEEeecCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcchHHHHHHHHHH
Q psy7475 69 GREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLMK 135 (295)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~ 135 (295)
+....+..|++|+++|+.|+ ..|..+.|+++++++... .++..+.+||.+|.|||.+..++|.|.
T Consensus 84 e~~~~~~~g~~Y~Ripitd~-~~P~~~~iD~fi~~v~~~-p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 84 EEELVEGNGLRYYRIPITDH-QAPDPEDIDAFINFVKSL-PKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp HHHHHHHTT-EEEEEEE-TT-S---HHHHHHHHHHHHTS--TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred HHHHHhcCCceEEEEeCCCc-CCCCHHHHHHHHHHHHhC-CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 35667788999999999999 599999999999999998 678999999999999999998888775
No 62
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.72 E-value=2.7e-08 Score=82.99 Aligned_cols=102 Identities=16% Similarity=0.247 Sum_probs=65.7
Q ss_pred eEEE-cCCcChhcHHHHHH----c--CCCEEEEcCcccccccccchhhhhh-----------------------------
Q psy7475 185 NIIL-GALPFKRLTNKLLE----E--NVKGVVSMNEDYELYFANGREEWNK----------------------------- 228 (295)
Q Consensus 185 ~l~~-g~~p~~~~~~~l~~----~--gi~~Vv~l~~~~e~~~~~~~~~~~~----------------------------- 228 (295)
+.|+ ...|.+..+..+++ . ..+.||+|++..|...+.+..+|+.
T Consensus 92 ~~yIAtQgP~~~t~ddFW~mvw~n~~~~gvIVmLt~l~E~~rekc~qYWp~~~~~~~~~G~~v~~~~~~e~~~d~~~~~~ 171 (302)
T COG5599 92 GKYIATQGPKPETIDDFWKMVWHNVPNNGVIVMLTSLPEYNREKCDQYWPLGYDDTLIIGLRVIKQKKYELFNDNIVNVH 171 (302)
T ss_pred CceEEecCCCCchHHHHHHHHHhcCCCceEEEEecChHHHhHHHHhhhCCCCcCcceeeeeEEEEEecccccccceeeee
Confidence 3344 45777777777666 2 2378999988776544445555550
Q ss_pred ---------cCceEeeccC---CCCCCCCcHHHHHHHHHHHHHHHh---CCCeEEEECCCCCChHHHHHHHHHHhcC
Q psy7475 229 ---------VGVEFLQLST---RDIFDTPDQDKLERGVDFIQRISK---TGGTVYVHCKAGRTRSATLVGCYLMKLE 290 (295)
Q Consensus 229 ---------~~i~~~~~p~---~d~~~~~~~~~~~~~~~~i~~~~~---~~~~vlVHC~~G~~Rsg~~~~ayLm~~~ 290 (295)
.+...+|+-. .|. ..| .+.+..+++..... +.+|++|||.||+||||||+|.--+.+.
T Consensus 172 ~f~L~~~~~~~k~Ihhf~y~nW~D~-~~p---~i~sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ll~~ 244 (302)
T COG5599 172 NFELTSINGPPKKIHHFQYINWVDF-NVP---DIRSLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILLRM 244 (302)
T ss_pred ecccccCCCCccEEEEEEecCcccc-CCc---CHHHHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHHHhc
Confidence 1122333332 333 223 56667778888663 4699999999999999999998766543
No 63
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=98.67 E-value=1.2e-07 Score=83.14 Aligned_cols=84 Identities=10% Similarity=-0.116 Sum_probs=55.0
Q ss_pred eEEEeecCCCCCCchHHHHHHHHHHHHHHH---------HcCCeEEEEcCCCCcchHHHHHHHHHHh---hccCCChHHH
Q psy7475 79 EFLQLSTRDIFDTPDQDKLERGVDFIQRIS---------KTGGTVYVHCKAGRTRSATLVGCYLMKV---TSRRWYDRID 146 (295)
Q Consensus 79 ~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~---------~~~~~vlVHC~~G~~Rs~~~~~~~l~~~---~~~~~~~~~a 146 (295)
+|....|+|++-......|.+++..+.+.. ...+||+|||++|+||||++++...+.. .....+..++
T Consensus 180 Hfqyt~WPd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~PIVVHCSaGvGRTGtFcaiDi~l~~~~~~~~vdi~~~ 259 (298)
T PHA02740 180 HFQYTAWPADGFSHDPDAFIDFFCNIDDLCADLEKHKADGKIAPIIIDCIDGISSSAVFCVFDICATEFDKTGMLSIANA 259 (298)
T ss_pred EEeecCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEECCCCCchhHHHHHHHHHHHHHHhcCcccHHHH
Confidence 344557788753333444544444444321 1247999999999999999999776653 1245577778
Q ss_pred HHHHHhcCCcccCCCc
Q psy7475 147 ENIILGALPFKRLTNK 162 (295)
Q Consensus 147 ~~~~~~~rp~~~~~~~ 162 (295)
+..+|+.|+....+..
T Consensus 260 V~~lR~qR~~~Vqt~~ 275 (298)
T PHA02740 260 LKKVRQKKYGCMNCLD 275 (298)
T ss_pred HHHHHhhCccccCCHH
Confidence 8888888887766644
No 64
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=98.66 E-value=1.3e-07 Score=83.40 Aligned_cols=94 Identities=11% Similarity=-0.097 Sum_probs=59.2
Q ss_pred EEEeecCCCCCCchHHHHHHHHHHHHHHHH------------cCCeEEEEcCCCCcchHHHHHHHHHHhh---ccCCChH
Q psy7475 80 FLQLSTRDIFDTPDQDKLERGVDFIQRISK------------TGGTVYVHCKAGRTRSATLVGCYLMKVT---SRRWYDR 144 (295)
Q Consensus 80 ~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~------------~~~~vlVHC~~G~~Rs~~~~~~~l~~~~---~~~~~~~ 144 (295)
|++..|+|++-......|.+++..+.+... ..+||+|||++|.||||+++++..+..+ ....+..
T Consensus 186 ~~y~~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtF~aid~~i~~~~~~~~v~v~ 265 (303)
T PHA02742 186 FAYEDWPHGGLPRDPNKFLDFVLAVREADLKADVDIKGENIVKEPPILVHCSAGLDRAGAFCAIDICISKYNERAIIPLL 265 (303)
T ss_pred EEECCCCCCCcCCCHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEECCCCCchhHHHHHHHHHHHHHHhcCCCCHH
Confidence 334467777533344555555555554211 1379999999999999999987766531 1244667
Q ss_pred HHHHHHHhcCCcccCCCccc--chhHHHHhh
Q psy7475 145 IDENIILGALPFKRLTNKED--RNNVFMEKV 173 (295)
Q Consensus 145 ~a~~~~~~~rp~~~~~~~~~--~~~~l~~~~ 173 (295)
+++..+|+.|+....+..+. -|..+.+++
T Consensus 266 ~~V~~lR~qR~~~Vqt~~QY~F~y~~l~~y~ 296 (303)
T PHA02742 266 SIVRDLRKQRHNCLSLPQQYIFCYFIVLIFA 296 (303)
T ss_pred HHHHHHHhhcccccCCHHHHHHHHHHHHHHH
Confidence 88888888888776664433 234444443
No 65
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=98.64 E-value=7.8e-08 Score=81.55 Aligned_cols=107 Identities=17% Similarity=0.208 Sum_probs=65.0
Q ss_pred cCeEEEcCCcChhcHH----HHHHcCCCEEEEcCcccccccccchhhhhh------------------------------
Q psy7475 183 DENIILGALPFKRLTN----KLLEENVKGVVSMNEDYELYFANGREEWNK------------------------------ 228 (295)
Q Consensus 183 ~~~l~~g~~p~~~~~~----~l~~~gi~~Vv~l~~~~e~~~~~~~~~~~~------------------------------ 228 (295)
...++++..|...+.+ ++++.+++.||.|++..+.....+.++|+.
T Consensus 41 ~~~~I~~q~P~~~t~~~FW~mv~~~~~~~Iv~L~~~~e~~~~~~~~y~P~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~~ 120 (235)
T PF00102_consen 41 GKKFIVTQAPMPDTIEDFWQMVWEQKVQIIVMLCSFDESGDEKCDQYWPLKEGESLKFGDYTVKCKEKIEENSKHYTVRK 120 (235)
T ss_dssp TEEEEEEES-SGGGHHHHHHHHHHTTBSEEEEESBSEETTEESS--TSTSSSSSEEEETTEEEEEEEEEEEEESSEEEEE
T ss_pred hhhheeecccccccccceehheeeccccceecccccccccccccccccccccccccccccccccccccccccccceEEee
Confidence 3457888888776654 455689999999998876311222233330
Q ss_pred -------c-----CceEeec-cCCCCCCCCcHHHHHHHHHHHHHHH-hCCCeEEEECCCCCChHHHHHHHHHHhc
Q psy7475 229 -------V-----GVEFLQL-STRDIFDTPDQDKLERGVDFIQRIS-KTGGTVYVHCKAGRTRSATLVGCYLMKL 289 (295)
Q Consensus 229 -------~-----~i~~~~~-p~~d~~~~~~~~~~~~~~~~i~~~~-~~~~~vlVHC~~G~~Rsg~~~~ayLm~~ 289 (295)
. .+.++++ .+.|...++..+.+..+++.+.... ..++|++|||.+|.||||+|+++.++..
T Consensus 121 l~v~~~~~~~~~~~v~~~~~~~W~~~~~P~~~~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~ 195 (235)
T PF00102_consen 121 LEVTNGKSKKKSRTVTHFHYTNWPDDGVPPSPESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIE 195 (235)
T ss_dssp EEEEETTTTEEEEEEEEEEEESSSSSSSGSSSHHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccceeeeeccccccccccchhhhhhhhccccccCCccceEeecccccccccccccchhhcc
Confidence 0 1111111 2333322334455555555555554 3458999999999999999999998864
No 66
>PHA02738 hypothetical protein; Provisional
Probab=98.59 E-value=1.1e-07 Score=84.36 Aligned_cols=85 Identities=13% Similarity=-0.000 Sum_probs=56.5
Q ss_pred eEEEeecCCCCCCchHHHHHHHHHHHHHHHH--------------cCCeEEEEcCCCCcchHHHHHHHHHHh---hccCC
Q psy7475 79 EFLQLSTRDIFDTPDQDKLERGVDFIQRISK--------------TGGTVYVHCKAGRTRSATLVGCYLMKV---TSRRW 141 (295)
Q Consensus 79 ~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~--------------~~~~vlVHC~~G~~Rs~~~~~~~l~~~---~~~~~ 141 (295)
+|....|+|.+.+.....|.+++..+.+... ..+||+|||++|.||||++++...+.. .....
T Consensus 181 h~~y~~Wpd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~~~~~~PIVVHCs~GiGRtGtFcaidi~i~~~~~~~~v 260 (320)
T PHA02738 181 HFNFTAWPDHDVPKNTSEFLNFVLEVRQCQKELAQESLQIGHNRLQPPPIVVHCNAGLGRTPCYCVVDISISRFDACATV 260 (320)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhhhcccCccccCCCCeEEEcCCCCChhhhhhHHHHHHHHHHhcCCc
Confidence 3455578887533344455555555554321 136999999999999999998776543 12355
Q ss_pred ChHHHHHHHHhcCCcccCCCcc
Q psy7475 142 YDRIDENIILGALPFKRLTNKE 163 (295)
Q Consensus 142 ~~~~a~~~~~~~rp~~~~~~~~ 163 (295)
+..+++..+|+.|+....+..+
T Consensus 261 dv~~~V~~lR~qR~~~vqt~~Q 282 (320)
T PHA02738 261 SIPSIVSSIRNQRYYSLFIPFQ 282 (320)
T ss_pred CHHHHHHHHHhhhhhccCCHHH
Confidence 6778888888888877766543
No 67
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=98.59 E-value=4.4e-07 Score=69.50 Aligned_cols=114 Identities=14% Similarity=0.146 Sum_probs=77.1
Q ss_pred hhHHHHHHcCCcEEEEcccccccccccchhhhhhcCceEEEeecCC-----CC-CCchHHHHHHHHHHHHHHHHcCCeEE
Q psy7475 42 RLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRD-----IF-DTPDQDKLERGVDFIQRISKTGGTVY 115 (295)
Q Consensus 42 ~~~~~L~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-----~~-~~~~~~~~~~~~~~i~~~~~~~~~vl 115 (295)
.-.+.-.+.|-+++|++...... +..... -.--+++.+-+.| .+ ..|-..++...++|+++.-+. .+++
T Consensus 23 ~~ae~~~rh~~t~mlsl~a~~t~-~~~pa~---~~~erhL~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp~~-apll 97 (172)
T COG5350 23 VIAETAARHGPTHMLSLLAKGTY-FHRPAV---IAAERHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPRF-APLL 97 (172)
T ss_pred HHHHHHhhcCCceEEEeeccccc-ccCccc---cchhhceeEeeccccCCCccccCCCHHHHHHHHHHHhcCccc-ccee
Confidence 33455556899999999874331 100000 0011233444433 33 445567899999999987654 8999
Q ss_pred EEcCCCCcchHHHHH-HHHHHhhccCCChHHHHHHHHhcCCcccCCCc
Q psy7475 116 VHCKAGRTRSATLVG-CYLMKVTSRRWYDRIDENIILGALPFKRLTNK 162 (295)
Q Consensus 116 VHC~~G~~Rs~~~~~-~~l~~~~~~~~~~~~a~~~~~~~rp~~~~~~~ 162 (295)
|||.+|+|||.+.+. +-|... ..+...+..+.++..+|+..||+-
T Consensus 98 IHC~aGISRStA~A~i~a~ala--~~~de~ela~~Lra~sp~atPN~R 143 (172)
T COG5350 98 IHCYAGISRSTAAALIAALALA--PDMDETELAERLRALSPYATPNPR 143 (172)
T ss_pred eeeccccccchHHHHHHHHhhc--cccChHHHHHHHHhcCcccCCChh
Confidence 999999999987764 344445 689999999999999999988853
No 68
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=98.57 E-value=2.4e-07 Score=82.06 Aligned_cols=85 Identities=11% Similarity=0.017 Sum_probs=56.6
Q ss_pred EEEeecCCCCCCchHHHHHHHHHHHHHHHH-----------cCCeEEEEcCCCCcchHHHHHHHHHHh---hccCCChHH
Q psy7475 80 FLQLSTRDIFDTPDQDKLERGVDFIQRISK-----------TGGTVYVHCKAGRTRSATLVGCYLMKV---TSRRWYDRI 145 (295)
Q Consensus 80 ~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~-----------~~~~vlVHC~~G~~Rs~~~~~~~l~~~---~~~~~~~~~ 145 (295)
|+...|+|.+.......|.+++..++...+ ..+||+|||++|.||||+++++..+.. .....+..+
T Consensus 187 ~~y~~Wpd~~~P~~~~~~l~fi~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRtGtfcaidi~i~~l~~~~~v~v~~ 266 (312)
T PHA02747 187 FQCSEWFEDETPSDHPDFIKFIKIIDINRKKSGKLFNPKDALLCPIVVHCSDGVGKTGIFCAVDICLNQLVKRKAICLAK 266 (312)
T ss_pred EEECCCCCCCCCCChHHHHHHHHHHHHHHHHhhccccccccCCCCEEEEecCCCcchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 333467777433334455556555554322 127999999999999999999876543 123567778
Q ss_pred HHHHHHhcCCcccCCCccc
Q psy7475 146 DENIILGALPFKRLTNKED 164 (295)
Q Consensus 146 a~~~~~~~rp~~~~~~~~~ 164 (295)
++..+|+.|+....+..+.
T Consensus 267 ~V~~lR~qR~~~Vqt~~QY 285 (312)
T PHA02747 267 TAEKIREQRHAGIMNFDDY 285 (312)
T ss_pred HHHHHHhccccccCCHHHH
Confidence 8888888888777665433
No 69
>KOG0792|consensus
Probab=98.56 E-value=2.3e-07 Score=90.41 Aligned_cols=83 Identities=12% Similarity=0.004 Sum_probs=63.6
Q ss_pred EeecCCCCCCchHHHHHHHHHHHHHHHHc-CCeEEEEcCCCCcchHHHHHHHHHHh---hccCCChHHHHHHHHhcCCcc
Q psy7475 82 QLSTRDIFDTPDQDKLERGVDFIQRISKT-GGTVYVHCKAGRTRSATLVGCYLMKV---TSRRWYDRIDENIILGALPFK 157 (295)
Q Consensus 82 ~~~~~D~~~~~~~~~~~~~~~~i~~~~~~-~~~vlVHC~~G~~Rs~~~~~~~l~~~---~~~~~~~~~a~~~~~~~rp~~ 157 (295)
++.|+|++..+....|.++++.|...... +.||+|||++|+||||+++.+-+|.. ++....+-+.+..+|..|-++
T Consensus 1033 YtaWPDHg~P~D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~lle~Ne~vdi~divr~mR~QR~~m 1112 (1144)
T KOG0792|consen 1033 YTAWPDHGVPDDPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALCLLEHNEPVDILDIVRTMRDQRAMM 1112 (1144)
T ss_pred ecccccCCCCCChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhh
Confidence 35688887666777888888888888766 67999999999999999997544433 245667778888888777777
Q ss_pred cCCCccc
Q psy7475 158 RLTNKED 164 (295)
Q Consensus 158 ~~~~~~~ 164 (295)
..+..+.
T Consensus 1113 VQT~~QY 1119 (1144)
T KOG0792|consen 1113 VQTLSQY 1119 (1144)
T ss_pred ccchHHh
Confidence 7665544
No 70
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=98.55 E-value=4e-07 Score=81.00 Aligned_cols=81 Identities=12% Similarity=-0.044 Sum_probs=53.8
Q ss_pred EeecCCCCCCchHHHHHHHHHHHHHHHH--------c---CCeEEEEcCCCCcchHHHHHHHHHHh---hccCCChHHHH
Q psy7475 82 QLSTRDIFDTPDQDKLERGVDFIQRISK--------T---GGTVYVHCKAGRTRSATLVGCYLMKV---TSRRWYDRIDE 147 (295)
Q Consensus 82 ~~~~~D~~~~~~~~~~~~~~~~i~~~~~--------~---~~~vlVHC~~G~~Rs~~~~~~~l~~~---~~~~~~~~~a~ 147 (295)
...|+|++-......|.++++.+.+... . .+||+|||++|.||||++++...+.. .....+..+++
T Consensus 207 y~~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtfcaid~~l~~l~~~~~vdv~~~V 286 (323)
T PHA02746 207 FPDWPDNGIPTGMAEFLELINKVNEEQAELIKQADNDPQTLGPIVVHCSAGIGRAGTFCAIDNALEQLEKEKEVCLGEIV 286 (323)
T ss_pred ECCCCCCCcCCCHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCEEEEcCCCCCcchhHHHHHHHHHHHHhcCCCCHHHHH
Confidence 4457777432334455555555554321 1 27999999999999999999766543 12456777888
Q ss_pred HHHHhcCCcccCCCc
Q psy7475 148 NIILGALPFKRLTNK 162 (295)
Q Consensus 148 ~~~~~~rp~~~~~~~ 162 (295)
..+|+.|+....+..
T Consensus 287 ~~lR~qR~~~Vqt~~ 301 (323)
T PHA02746 287 LKIRKQRHSSVFLPE 301 (323)
T ss_pred HHHHhcccccCCCHH
Confidence 888888887766643
No 71
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=98.55 E-value=2e-07 Score=71.33 Aligned_cols=93 Identities=14% Similarity=0.182 Sum_probs=62.1
Q ss_pred cCCcChhcHHHHHHcCCCEEEEcCccccc-ccccchhhhhhcCceEeeccCCCCC-CCCcHHHHHHHHHHHHHHHhCCCe
Q psy7475 189 GALPFKRLTNKLLEENVKGVVSMNEDYEL-YFANGREEWNKVGVEFLQLSTRDIF-DTPDQDKLERGVDFIQRISKTGGT 266 (295)
Q Consensus 189 g~~p~~~~~~~l~~~gi~~Vv~l~~~~e~-~~~~~~~~~~~~~i~~~~~p~~d~~-~~~~~~~~~~~~~~i~~~~~~~~~ 266 (295)
+-.|.....++....|.+++|++....+. ..+-....-....+.+..+-..|.+ ..|..+++..+++|++++-+. .+
T Consensus 17 vv~Pl~~~ae~~~rh~~t~mlsl~a~~t~~~~pa~~~~erhL~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp~~-ap 95 (172)
T COG5350 17 VVSPLSVIAETAARHGPTHMLSLLAKGTYFHRPAVIAAERHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPRF-AP 95 (172)
T ss_pred EechHHHHHHHHhhcCCceEEEeecccccccCccccchhhceeEeeccccCCCccccCCCHHHHHHHHHHHhcCccc-cc
Confidence 34455566677777999999999886442 1111111111123344444444444 567789999999999998665 79
Q ss_pred EEEECCCCCChHHHHH
Q psy7475 267 VYVHCKAGRTRSATLV 282 (295)
Q Consensus 267 vlVHC~~G~~Rsg~~~ 282 (295)
+||||.+|+|||...+
T Consensus 96 llIHC~aGISRStA~A 111 (172)
T COG5350 96 LLIHCYAGISRSTAAA 111 (172)
T ss_pred eeeeeccccccchHHH
Confidence 9999999999996554
No 72
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=98.44 E-value=3.5e-07 Score=78.30 Aligned_cols=109 Identities=17% Similarity=0.226 Sum_probs=63.7
Q ss_pred cccCeEEEcCCcChhcHH--HHHHcCCCEEEEcCcccccccccchhhhhhcCce---EeeccCCCCCCCCcHH-HHHHHH
Q psy7475 181 RIDENIILGALPFKRLTN--KLLEENVKGVVSMNEDYELYFANGREEWNKVGVE---FLQLSTRDIFDTPDQD-KLERGV 254 (295)
Q Consensus 181 ~i~~~l~~g~~p~~~~~~--~l~~~gi~~Vv~l~~~~e~~~~~~~~~~~~~~i~---~~~~p~~d~~~~~~~~-~~~~~~ 254 (295)
.+....++++.|.+.+.. ....+++++++++..+.+.. ...+..+-+. ...+...+.+..+..+ ..+...
T Consensus 50 i~~~~~~Rs~~p~~~~~~~~~~~~~~l~~~i~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 125 (249)
T COG2365 50 IIPIIDYRSGQPVPVQPDPELLDALYLKTIINLRDESNTN----VELYTDHLINWDKAAIIMFESYRSFPTREDAAERLV 125 (249)
T ss_pred ccceeEcCCCCcccccCCccccccccccccccccccchhh----hhhhhhhhhhhccccchhhhhhccCccchhhHHHHH
Confidence 344467888888776665 66679999999998622210 0111111111 1112222222222222 223333
Q ss_pred HHHHHHHhC-CCeEEEECCCCCChHHHHHHHHHHhcCCCC
Q psy7475 255 DFIQRISKT-GGTVYVHCKAGRTRSATLVGCYLMKLEPVP 293 (295)
Q Consensus 255 ~~i~~~~~~-~~~vlVHC~~G~~Rsg~~~~ayLm~~~~~~ 293 (295)
.++.-.... ++|||+||++|+.|||.++|+|+...++..
T Consensus 126 ~~~~l~~~~e~~PvL~HC~~GkdRTGl~~al~r~~~~~~~ 165 (249)
T COG2365 126 ELLQLLADAENGPVLIHCTAGKDRTGLVAALYRKLVGGSD 165 (249)
T ss_pred HHHHHHhhcccCCEEEecCCCCcchHHHHHHHHHHhCCch
Confidence 344444444 399999999999999999999999887764
No 73
>KOG2283|consensus
Probab=98.42 E-value=5.9e-07 Score=82.06 Aligned_cols=120 Identities=16% Similarity=0.174 Sum_probs=87.7
Q ss_pred cccccCceEEcCCcChhhHH-----------HHHH--cCCcEEEEcccccccccccchhhhhhcCceEEEeecCCCCCCc
Q psy7475 26 YDRIDENIILGALPFKRLTN-----------KLLE--ENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTP 92 (295)
Q Consensus 26 ~~~i~~~ly~G~~~~~~~~~-----------~L~~--~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 92 (295)
++-|+++|...+.|+...-. .|.. .|=-.|.|||.+.. .+...+ .-+...++++|+ ..|
T Consensus 15 ltYIT~rIIamsfPa~~~es~yRN~l~dV~~fL~s~H~~~y~vyNL~~er~----yd~~~f---~g~V~~~~~~Dh-~~P 86 (434)
T KOG2283|consen 15 LTYITSRIIAMSFPAEGIESLYRNNLEDVVLFLDSKHKDHYKVYNLSSERL----YDPSRF---HGRVARFGFDDH-NPP 86 (434)
T ss_pred ceeeeeeEEEEeCCCCcchhhhcCCHHHHHHHHhhccCCceEEEecCcccc----CCcccc---ccceeecCCCCC-CCC
Confidence 67788888888877754322 1222 24446788885332 011111 224556899999 699
Q ss_pred hHHHHHHHHHHHHHHHHcC--CeEEEEcCCCCcchHHHHHHHHHHhhccCCChHHHHHHHHhcC
Q psy7475 93 DQDKLERGVDFIQRISKTG--GTVYVHCKAGRTRSATLVGCYLMKVTSRRWYDRIDENIILGAL 154 (295)
Q Consensus 93 ~~~~~~~~~~~i~~~~~~~--~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~~~a~~~~~~~r 154 (295)
.++.+..+++-++.-+.+. .-|.|||.+|.+|||++++|||+.. +.--++++|+.++-.+|
T Consensus 87 ~L~~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~icA~L~~~-~~~~ta~eald~~~~kR 149 (434)
T KOG2283|consen 87 PLELLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGVMICAYLIYS-GISATAEEALDYFNEKR 149 (434)
T ss_pred cHHHHHHHHHCHHHHHhcCccceEEEEccCCCcceEEEEeHHHHhh-hhcCCHHHHHHHHhhhh
Confidence 9999999999999987664 6799999999999999999999998 23445899999999988
No 74
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=98.35 E-value=1.8e-06 Score=73.16 Aligned_cols=79 Identities=14% Similarity=0.071 Sum_probs=55.6
Q ss_pred EeecCCCCCCc-hHHHHHHHHHHHHHHH-HcCCeEEEEcCCCCcchHHHHHHHHHHh---hccCCChHHHHHHHHhcCCc
Q psy7475 82 QLSTRDIFDTP-DQDKLERGVDFIQRIS-KTGGTVYVHCKAGRTRSATLVGCYLMKV---TSRRWYDRIDENIILGALPF 156 (295)
Q Consensus 82 ~~~~~D~~~~~-~~~~~~~~~~~i~~~~-~~~~~vlVHC~~G~~Rs~~~~~~~l~~~---~~~~~~~~~a~~~~~~~rp~ 156 (295)
...|.|.. .| ....+.++++.+.... ...+|++|||.+|.||||+++++.++.. .....+..+++..+|+.|+.
T Consensus 140 ~~~W~~~~-~P~~~~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~ 218 (235)
T PF00102_consen 140 YTNWPDDG-VPPSPESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIEQLKKEGEVDVFEIVKKLRQQRPG 218 (235)
T ss_dssp EESSSSSS-SGSSSHHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHTTSTT
T ss_pred eeeccccc-cccccchhhhhhhhccccccCCccceEeecccccccccccccchhhccccccccchhhHHHHHHHHhhCCC
Confidence 34566653 33 3444445555555544 3458999999999999999999888754 12346888999999999987
Q ss_pred ccCCC
Q psy7475 157 KRLTN 161 (295)
Q Consensus 157 ~~~~~ 161 (295)
.-.+.
T Consensus 219 ~i~~~ 223 (235)
T PF00102_consen 219 AIQSP 223 (235)
T ss_dssp SSSSH
T ss_pred ccCCH
Confidence 76553
No 75
>KOG2386|consensus
Probab=98.30 E-value=1.5e-06 Score=77.58 Aligned_cols=122 Identities=19% Similarity=0.268 Sum_probs=89.1
Q ss_pred CceEEcC-CcChh-hHHHHHH--cCCcEEEEcccccccccccchhhhhhcCceEEEeecCCCCCCchHHHHHHHHHHHHH
Q psy7475 31 ENIILGA-LPFKR-LTNKLLE--ENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQR 106 (295)
Q Consensus 31 ~~ly~G~-~~~~~-~~~~L~~--~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~ 106 (295)
+.+.-|+ .-... -...|++ ..+..+++++...- .+ ..+..+..|+.|+.+........|.......+++.++.
T Consensus 39 ~k~~~~~~~f~~~dl~~~l~~~~~~vgl~iDltnt~r-yy--~~~~~~~~g~~Y~K~~c~g~~~vp~~~~v~~fv~~v~~ 115 (393)
T KOG2386|consen 39 TKTFPGSQRFQPKDLFELLKEHNYKVGLKIDLTNTLR-YY--DKPELEERGVKYLKRNCPGRGVVPRTELVDKFVKLVKG 115 (393)
T ss_pred cCCCCCccccCHHHHHHHHHhcCceEEEEEeccceee-ee--ccccccccceeEEEeccCCcccCCCccchHHHHHHHHH
Confidence 3455555 32333 3455666 45678888876542 22 46677888999999988776555655555555555554
Q ss_pred H----HHcCCeEEEEcCCCCcchHHHHHHHHHHhhccCCChHHHHHHHHhcCCcc
Q psy7475 107 I----SKTGGTVYVHCKAGRTRSATLVGCYLMKVTSRRWYDRIDENIILGALPFK 157 (295)
Q Consensus 107 ~----~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~~~a~~~~~~~rp~~ 157 (295)
. ...++-|+|||.+|.+|++-++++||+.. .+++..+|++.+..+||.-
T Consensus 116 f~~~~~~~~~LI~vhcthG~NrtgyLI~~yL~~~--~~~s~~~aik~f~~~r~~g 168 (393)
T KOG2386|consen 116 FVDDTKLDDELIGVHCTHGLNRTGYLICAYLADV--GGYSSSEAIKRFADARPPG 168 (393)
T ss_pred HHhcccCCCCEEEEeCCCcccccceeeeeeeeec--cCccHHHHHHHHHHhCCCc
Confidence 4 44678999999999999999999999999 8899999999999988843
No 76
>KOG0793|consensus
Probab=98.26 E-value=1.7e-06 Score=80.95 Aligned_cols=102 Identities=17% Similarity=0.205 Sum_probs=65.5
Q ss_pred EEEc-CCcChhc----HHHHHHcCCCEEEEcCcccccccccchhhhhhcCceEeec------------------------
Q psy7475 186 IILG-ALPFKRL----TNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQL------------------------ 236 (295)
Q Consensus 186 l~~g-~~p~~~~----~~~l~~~gi~~Vv~l~~~~e~~~~~~~~~~~~~~i~~~~~------------------------ 236 (295)
.|++ ..|.++. |+++|+.|+..||+|+...|.+...+..+|.+.|-+.+|+
T Consensus 804 aYIAtQgPl~stiA~FWQmvWe~G~~vIV~Lt~l~Engv~qc~rYWPdeGselyhiyEV~LVSEHIWceDfLVRSFYLKN 883 (1004)
T KOG0793|consen 804 AYIATQGPLPSTIADFWQMVWESGCVVIVMLTPLAENGVRQCYRYWPDEGSELYHIYEVNLVSEHIWCEDFLVRSFYLKN 883 (1004)
T ss_pred ceeeccCCCchHHHHHHHHHHHcCcEEEEEecChhhcchhhhhhcCCCCCcceeeeEEeeeehhhhhhhhHHHHHHHHhh
Confidence 4443 3454443 6777889999999999988876566777788766433332
Q ss_pred ------------cCCCCCCCCcHHHHHHHHHHHHHHHh----CCCeEEEECCCCCChHHHHHHHHHH
Q psy7475 237 ------------STRDIFDTPDQDKLERGVDFIQRISK----TGGTVYVHCKAGRTRSATLVGCYLM 287 (295)
Q Consensus 237 ------------p~~d~~~~~~~~~~~~~~~~i~~~~~----~~~~vlVHC~~G~~Rsg~~~~ayLm 287 (295)
.+..++.......-..+++|-....+ +..||+|||++|.||||+.|+.=++
T Consensus 884 lqtseTRTvTQFHfLSWp~egvPasarslLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~YiliDmv 950 (1004)
T KOG0793|consen 884 LQTSETRTVTQFHFLSWPDEGVPASARSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYILIDMV 950 (1004)
T ss_pred cccccceeeeeeeeecccccCCccchHHHHHHHHHhhhhccCCCCceEEEccCCCCccceeeeHHHH
Confidence 11111111222334446666666544 2479999999999999998765443
No 77
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.22 E-value=7.8e-07 Score=74.37 Aligned_cols=77 Identities=17% Similarity=0.239 Sum_probs=49.5
Q ss_pred EeecCCCCCCchHHHHHHHHHHHHHHH---HcCCeEEEEcCCCCcchHHHHHHHHHHhhccC---------CChHHHHHH
Q psy7475 82 QLSTRDIFDTPDQDKLERGVDFIQRIS---KTGGTVYVHCKAGRTRSATLVGCYLMKVTSRR---------WYDRIDENI 149 (295)
Q Consensus 82 ~~~~~D~~~~~~~~~~~~~~~~i~~~~---~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~---------~~~~~a~~~ 149 (295)
...|.|.. .| .+.+..++++... -+++|++|||+||.||||++++...+.++... .+-+-.++.
T Consensus 190 y~nW~D~~-~p---~i~sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ll~~~~~~~~~t~~~~~t~D~if~i 265 (302)
T COG5599 190 YINWVDFN-VP---DIRSLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILLRMPNDTLNHTDTWEDTQDLIFQI 265 (302)
T ss_pred ecCccccC-Cc---CHHHHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHHHhccccccCCCchhhhhhhHHHHH
Confidence 34578875 45 3344555665554 25699999999999999999998877762222 222445555
Q ss_pred HHhcCCcccCCCc
Q psy7475 150 ILGALPFKRLTNK 162 (295)
Q Consensus 150 ~~~~rp~~~~~~~ 162 (295)
+-+.|..+..+.+
T Consensus 266 V~~LRsQRmkmVQ 278 (302)
T COG5599 266 VLSLRSQRMKMVQ 278 (302)
T ss_pred HHHHHHHHHHHHH
Confidence 5566665554443
No 78
>KOG2283|consensus
Probab=98.21 E-value=4.2e-07 Score=82.98 Aligned_cols=107 Identities=18% Similarity=0.232 Sum_probs=74.8
Q ss_pred cccccCeEEEcCCcChhcH-----------HHHHH--cCCCEEEEcCcccccccccchhhhhhcCceEeeccCCCCCCCC
Q psy7475 179 YDRIDENIILGALPFKRLT-----------NKLLE--ENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTP 245 (295)
Q Consensus 179 ~~~i~~~l~~g~~p~~~~~-----------~~l~~--~gi~~Vv~l~~~~e~~~~~~~~~~~~~~i~~~~~p~~d~~~~~ 245 (295)
++-|+++++..+.|....- .+|.. .+=-.|-||+.+.. +....+.. ....++++|. .+|
T Consensus 15 ltYIT~rIIamsfPa~~~es~yRN~l~dV~~fL~s~H~~~y~vyNL~~er~----yd~~~f~g---~V~~~~~~Dh-~~P 86 (434)
T KOG2283|consen 15 LTYITSRIIAMSFPAEGIESLYRNNLEDVVLFLDSKHKDHYKVYNLSSERL----YDPSRFHG---RVARFGFDDH-NPP 86 (434)
T ss_pred ceeeeeeEEEEeCCCCcchhhhcCCHHHHHHHHhhccCCceEEEecCcccc----CCcccccc---ceeecCCCCC-CCC
Confidence 5668888888888854332 22222 23334778886321 11122211 2445899998 599
Q ss_pred cHHHHHHHHHHHHHHHhC--CCeEEEECCCCCChHHHHHHHHHHhcCCCC
Q psy7475 246 DQDKLERGVDFIQRISKT--GGTVYVHCKAGRTRSATLVGCYLMKLEPVP 293 (295)
Q Consensus 246 ~~~~~~~~~~~i~~~~~~--~~~vlVHC~~G~~Rsg~~~~ayLm~~~~~~ 293 (295)
..+.+..+++-++..++. ...|.|||++|+||||++++||||+....+
T Consensus 87 ~L~~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~icA~L~~~~~~~ 136 (434)
T KOG2283|consen 87 PLELLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGVMICAYLIYSGISA 136 (434)
T ss_pred cHHHHHHHHHCHHHHHhcCccceEEEEccCCCcceEEEEeHHHHhhhhcC
Confidence 999999999999997764 578899999999999999999999986543
No 79
>KOG0790|consensus
Probab=98.17 E-value=1.4e-06 Score=77.67 Aligned_cols=86 Identities=21% Similarity=0.333 Sum_probs=51.6
Q ss_pred HHHHHHcCCCEEEEcCcccccccccchhhhhhcC----------------------------------------ceEeec
Q psy7475 197 TNKLLEENVKGVVSMNEDYELYFANGREEWNKVG----------------------------------------VEFLQL 236 (295)
Q Consensus 197 ~~~l~~~gi~~Vv~l~~~~e~~~~~~~~~~~~~~----------------------------------------i~~~~~ 236 (295)
+.+.++.+-..||+-+.+.|.+-+.+..+|++.+ .+|+-+
T Consensus 341 W~MvwQENsrVIVMtTkE~ERgK~KC~~YWPee~~~e~~G~~~v~~v~E~~t~dY~LR~l~vs~~~~g~~~R~I~~yh~~ 420 (600)
T KOG0790|consen 341 WRMVWQENSRVIVMTTKEVERGKSKCVKYWPEEGALEEYGVMRVRNVKESDTHDYTLRELKVSKLGNGNLEREIWHYHYL 420 (600)
T ss_pred HHHHHhccceEEEEehhhhhcccccccccCCcccchhhcCceEEEeccccccccceehheeeccccCCcchhhhhhhhee
Confidence 4556667777777777777665555566665522 123333
Q ss_pred cCCCCCCCCcHHHHHHHHHHHHHHHh------CCCeEEEECCCCCChHHHHHHHH
Q psy7475 237 STRDIFDTPDQDKLERGVDFIQRISK------TGGTVYVHCKAGRTRSATLVGCY 285 (295)
Q Consensus 237 p~~d~~~~~~~~~~~~~~~~i~~~~~------~~~~vlVHC~~G~~Rsg~~~~ay 285 (295)
-++|.+.+..+..+ ++|+++... .-|||.|||+||+||||||+..=
T Consensus 421 tWPDHGvP~dPg~v---LnFLe~V~~rq~~l~~AgpIvVHCSAGIGrTGTfiViD 472 (600)
T KOG0790|consen 421 TWPDHGVPSDPGGV---LNFLEEVNHRQESLMDAGPIVVHCSAGIGRTGTFIVID 472 (600)
T ss_pred ecccCCCcCCccHH---HHHHHHhhhhhccccccCcEEEEccCCcCCcceEEEhH
Confidence 34444322223333 455555322 24899999999999999986543
No 80
>KOG0791|consensus
Probab=98.15 E-value=7.1e-06 Score=71.83 Aligned_cols=93 Identities=19% Similarity=0.202 Sum_probs=62.0
Q ss_pred ceEEEeecCCCCCCch-HHHHHHHHHHHHHHHHc-CCeEEEEcCCCCcchHHHHHHHHHHhhccCCChHHHHHHHHhcCC
Q psy7475 78 VEFLQLSTRDIFDTPD-QDKLERGVDFIQRISKT-GGTVYVHCKAGRTRSATLVGCYLMKVTSRRWYDRIDENIILGALP 155 (295)
Q Consensus 78 ~~~~~~~~~D~~~~~~-~~~~~~~~~~i~~~~~~-~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~~~a~~~~~~~rp 155 (295)
.+++...|+|++ .|. ...+.++..-..+.... .++++|||++|+||||++++..-+.++-......+.++.+.+.|.
T Consensus 253 r~f~y~~wPd~g-vp~~~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald~LLqq~~~~~~vdi~~iv~~lR~ 331 (374)
T KOG0791|consen 253 RHFHYTAWPDFG-VPSSTESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALDRLLQQIDSEETVDIFGVVLELRS 331 (374)
T ss_pred EEEEEeeccccC-CCCCchhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHHHHHHHhcccccccHHHHHHHhhh
Confidence 356677899985 552 23344444444444433 589999999999999999999888774455557777777776666
Q ss_pred cccCCCcccchhHHHH
Q psy7475 156 FKRLTNKEDRNNVFME 171 (295)
Q Consensus 156 ~~~~~~~~~~~~~l~~ 171 (295)
.+..+.+...+..+..
T Consensus 332 ~R~~mVqte~Qyvfl~ 347 (374)
T KOG0791|consen 332 ARMLMVQTEDQYVFLH 347 (374)
T ss_pred ccccccchHHHHHHHH
Confidence 6665655554444433
No 81
>KOG0790|consensus
Probab=98.14 E-value=2.8e-06 Score=75.77 Aligned_cols=116 Identities=15% Similarity=0.092 Sum_probs=68.3
Q ss_pred HHHHHHcCCcEEEEcccccccccccc--------hhhhhhcCceEEEeecCCCCCCchHH-HHHHHHHHHHH---HHHcC
Q psy7475 44 TNKLLEENVKGVVSMNEDYELYFANG--------REEWNKVGVEFLQLSTRDIFDTPDQD-KLERGVDFIQR---ISKTG 111 (295)
Q Consensus 44 ~~~L~~~gi~~Vv~l~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~D~~~~~~~~-~~~~~~~~i~~---~~~~~ 111 (295)
...++++|+-.|=|+.+.....+.-. .......-.+|+..-|+|++ .|..+ -+..+++-++. .+...
T Consensus 373 e~~~e~~G~~~v~~v~E~~t~dY~LR~l~vs~~~~g~~~R~I~~yh~~tWPDHG-vP~dPg~vLnFLe~V~~rq~~l~~A 451 (600)
T KOG0790|consen 373 EGALEEYGVMRVRNVKESDTHDYTLRELKVSKLGNGNLEREIWHYHYLTWPDHG-VPSDPGGVLNFLEEVNHRQESLMDA 451 (600)
T ss_pred ccchhhcCceEEEeccccccccceehheeeccccCCcchhhhhhhheeecccCC-CcCCccHHHHHHHHhhhhhcccccc
Confidence 34566788888888766432211000 01112233578888999995 55433 33333343333 23345
Q ss_pred CeEEEEcCCCCcchHHHHHHHHHHhh--ccCC----ChHHHHHHHHhcCCcccCC
Q psy7475 112 GTVYVHCKAGRTRSATLVGCYLMKVT--SRRW----YDRIDENIILGALPFKRLT 160 (295)
Q Consensus 112 ~~vlVHC~~G~~Rs~~~~~~~l~~~~--~~~~----~~~~a~~~~~~~rp~~~~~ 160 (295)
+||.|||++|+||||++++..++..+ -.|. +....++++|+.|.-...+
T Consensus 452 gpIvVHCSAGIGrTGTfiViD~lld~I~~~Gldc~iDi~ktIqmVRsqRSGmVQT 506 (600)
T KOG0790|consen 452 GPIVVHCSAGIGRTGTFIVIDMLLDQIREKGLDCDIDIQKTIQMVRSQRSGMVQT 506 (600)
T ss_pred CcEEEEccCCcCCcceEEEhHHHHHHHHhcCCCCcccHHHHHHHHHHHhcchhhh
Confidence 89999999999999999986655320 0333 4556666777666655544
No 82
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=98.13 E-value=5.6e-06 Score=70.95 Aligned_cols=120 Identities=17% Similarity=0.220 Sum_probs=67.0
Q ss_pred ceEEcCCcChhhHH--HHHHcCCcEEEEcccccccccccchhhhhhcCce---EEEeecCCCCCCch-HHHHHHHHHHHH
Q psy7475 32 NIILGALPFKRLTN--KLLEENVKGVVSMNEDYELYFANGREEWNKVGVE---FLQLSTRDIFDTPD-QDKLERGVDFIQ 105 (295)
Q Consensus 32 ~ly~G~~~~~~~~~--~L~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~-~~~~~~~~~~i~ 105 (295)
..|.++.|...+.. .....+++.++++..+... ....+..+-+. ...+...+....+. ....+...+++.
T Consensus 54 ~~~Rs~~p~~~~~~~~~~~~~~l~~~i~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 129 (249)
T COG2365 54 IDYRSGQPVPVQPDPELLDALYLKTIINLRDESNT----NVELYTDHLINWDKAAIIMFESYRSFPTREDAAERLVELLQ 129 (249)
T ss_pred eEcCCCCcccccCCccccccccccccccccccchh----hhhhhhhhhhhhccccchhhhhhccCccchhhHHHHHHHHH
Confidence 47888888876665 6666888888888862211 01111111111 11111111111111 112333334444
Q ss_pred HHHHcC-CeEEEEcCCCCcchHHHHHHHHHHhhccCCChHHHHHHHHhcCCcc
Q psy7475 106 RISKTG-GTVYVHCKAGRTRSATLVGCYLMKVTSRRWYDRIDENIILGALPFK 157 (295)
Q Consensus 106 ~~~~~~-~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~~~a~~~~~~~rp~~ 157 (295)
-.+..+ +|||+||.+|..|||.++++|+... .++....+-.++...++..
T Consensus 130 l~~~~e~~PvL~HC~~GkdRTGl~~al~r~~~--~~~~~~v~~dyl~~~~~~~ 180 (249)
T COG2365 130 LLADAENGPVLIHCTAGKDRTGLVAALYRKLV--GGSDETVAADYLLTNRYGE 180 (249)
T ss_pred HHhhcccCCEEEecCCCCcchHHHHHHHHHHh--CCchhHHHHHHHHcCCccc
Confidence 444444 9999999999999999999999988 4444445555554444433
No 83
>KOG0791|consensus
Probab=98.02 E-value=1.2e-05 Score=70.46 Aligned_cols=93 Identities=17% Similarity=0.201 Sum_probs=54.3
Q ss_pred HHHHHHcCCCEEEEcCcccccccccchhhhhhcC------------------------------------c-eEeeccCC
Q psy7475 197 TNKLLEENVKGVVSMNEDYELYFANGREEWNKVG------------------------------------V-EFLQLSTR 239 (295)
Q Consensus 197 ~~~l~~~gi~~Vv~l~~~~e~~~~~~~~~~~~~~------------------------------------i-~~~~~p~~ 239 (295)
++..++..+..||.|+.-.|.+-..+.++|+... + +++..-++
T Consensus 182 W~mvwq~~~~~IVmlt~~~e~~R~kc~~ywP~~~~~~~~gdi~V~~v~e~~~~~w~ir~~~l~~~~~sr~ir~f~y~~wP 261 (374)
T KOG0791|consen 182 WKMVWQQKSHIIVMLTKCNEKGRVKCDEYWPDEEVPVAYGDITVTMVSEESLDEWTIREFRLNYAGESRKIRHFHYTAWP 261 (374)
T ss_pred HHHHHHhhcceEEEEeecccccchhhhhhcccccccceeccEEEEEechhhcCCceEEEEeeecccccceeEEEEEeecc
Confidence 5777778999999987766542223333333311 1 12222344
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHh-CCCeEEEECCCCCChHHHHHHHHHHhc
Q psy7475 240 DIFDTPDQDKLERGVDFIQRISK-TGGTVYVHCKAGRTRSATLVGCYLMKL 289 (295)
Q Consensus 240 d~~~~~~~~~~~~~~~~i~~~~~-~~~~vlVHC~~G~~Rsg~~~~ayLm~~ 289 (295)
|.+.+.......++.....+... ..++++|||.+|+||||||+|.--+.+
T Consensus 262 d~gvp~~~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald~LLq 312 (374)
T KOG0791|consen 262 DFGVPSSTESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALDRLLQ 312 (374)
T ss_pred ccCCCCCchhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHHHHHH
Confidence 54322223333433344444332 368999999999999999999865554
No 84
>KOG4228|consensus
Probab=97.93 E-value=8.6e-06 Score=80.38 Aligned_cols=103 Identities=19% Similarity=0.241 Sum_probs=61.0
Q ss_pred eEEE-cCCcChhcH----HHHHHcCCCEEEEcCcccccccccchhhhhh-------------------------------
Q psy7475 185 NIIL-GALPFKRLT----NKLLEENVKGVVSMNEDYELYFANGREEWNK------------------------------- 228 (295)
Q Consensus 185 ~l~~-g~~p~~~~~----~~l~~~gi~~Vv~l~~~~e~~~~~~~~~~~~------------------------------- 228 (295)
+-|+ ...|....+ .++|+.+-..||++....|.....+..+|+.
T Consensus 608 n~yIaaQgP~~eTv~DFWRMVWEq~S~~IVMvTnl~E~~r~kC~qYWP~~t~~yGdi~V~~~~~~~~a~y~iRtf~l~~~ 687 (1087)
T KOG4228|consen 608 NAYIAAQGPRPETVGDFWRMVWEQKSAGIVMVTNLEEFSRVKCAQYWPEGTETYGDIKVTLVQTKPLAEYGIRTFALKKQ 687 (1087)
T ss_pred ccceeccCCcccchHHHHHHheeccCCcEEEEecccccccccccccCCCCccccccccccceeeeeeccceEEeeecccc
Confidence 4444 345555554 4777788888888877666544455556662
Q ss_pred ---cCceEeeccCCCCCCCCcHHHHHHHHHHHHHHHhC----CCeEEEECCCCCChHHHHHHHHHH
Q psy7475 229 ---VGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKT----GGTVYVHCKAGRTRSATLVGCYLM 287 (295)
Q Consensus 229 ---~~i~~~~~p~~d~~~~~~~~~~~~~~~~i~~~~~~----~~~vlVHC~~G~~Rsg~~~~ayLm 287 (295)
...+..++.+..+++...++.....++|+...+.- .||++|||++|+||||++++.=-|
T Consensus 688 g~~~~R~v~qfhFt~Wpd~gvPe~~t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi~iDam 753 (1087)
T KOG4228|consen 688 GENPKREVRQFHFTAWPDHGVPETPTGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFIVIDAM 753 (1087)
T ss_pred CCCCCceeeeeeeccCCCCCCcccchHHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEEEeHHH
Confidence 01112222222222222233445566777775543 399999999999999998764333
No 85
>KOG0789|consensus
Probab=97.82 E-value=4.9e-05 Score=70.22 Aligned_cols=23 Identities=39% Similarity=0.510 Sum_probs=20.8
Q ss_pred CCCeEEEECCCCCChHHHHHHHH
Q psy7475 263 TGGTVYVHCKAGRTRSATLVGCY 285 (295)
Q Consensus 263 ~~~~vlVHC~~G~~Rsg~~~~ay 285 (295)
..+|++|||.+|+||||++++.-
T Consensus 298 ~~~P~vVhcsaG~gRtgt~v~~~ 320 (415)
T KOG0789|consen 298 KQEPIEVHCSAGAGRAGTLVLIE 320 (415)
T ss_pred CCCCeEEECCCCCCccchHHHHH
Confidence 46899999999999999999765
No 86
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=97.72 E-value=0.00045 Score=53.39 Aligned_cols=83 Identities=14% Similarity=0.137 Sum_probs=51.6
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHc---CCeEEEEcCCCCc----chHHHHHHHHHHhhccCCChHHHHHHHHhc----C
Q psy7475 86 RDIFDTPDQDKLERGVDFIQRISKT---GGTVYVHCKAGRT----RSATLVGCYLMKVTSRRWYDRIDENIILGA----L 154 (295)
Q Consensus 86 ~D~~~~~~~~~~~~~~~~i~~~~~~---~~~vlVHC~~G~~----Rs~~~~~~~l~~~~~~~~~~~~a~~~~~~~----r 154 (295)
.|. +.....++-+++..+++.+++ .++.+|||++.-. .++.++++|+|.. .+||+++|++.+.+. .
T Consensus 39 ~DF-GPlnL~~lyrfc~~l~~~L~~~~~~~k~iv~yts~d~~kRaNAA~Lig~y~Vi~--l~~spe~A~~~l~~~~p~~~ 115 (141)
T PF14671_consen 39 ADF-GPLNLAQLYRFCCKLNKKLKSPELKKKKIVHYTSSDPKKRANAAFLIGAYAVIY--LGMSPEEAYKPLASIQPPFM 115 (141)
T ss_dssp S-------HHHHHHHHHHHHHHHH-GGGTTSEEEEEE-S-HHHHHHHHHHHHHHHHHT--S---HHHHHHHHTTTT----
T ss_pred CcC-CCccHHHHHHHHHHHHHHHcCHHhcCCeEEEECCCChhHHHHHHHHHHHHHHHh--cCCCHHHHHHHHHhcCCCCC
Confidence 555 567778888888888888776 5777888775543 4888999999999 999999999999875 6
Q ss_pred CcccCCCcccchhHHHH
Q psy7475 155 PFKRLTNKEDRNNVFME 171 (295)
Q Consensus 155 p~~~~~~~~~~~~~l~~ 171 (295)
|++..+.+...|++...
T Consensus 116 pFRDAs~g~~~y~Lti~ 132 (141)
T PF14671_consen 116 PFRDASYGPCTYDLTIL 132 (141)
T ss_dssp -B--SSSSS-S--B-HH
T ss_pred CCCCCCCCCcCceeEHH
Confidence 78888888887776543
No 87
>KOG2386|consensus
Probab=97.65 E-value=4.9e-05 Score=68.02 Aligned_cols=96 Identities=19% Similarity=0.311 Sum_probs=67.7
Q ss_pred cHHHHHH--cCCCEEEEcCcccccccccchhhhhhcCceEeeccCCCCCCCCcHHHHHHHHHH----HHHHHhCCCeEEE
Q psy7475 196 LTNKLLE--ENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDF----IQRISKTGGTVYV 269 (295)
Q Consensus 196 ~~~~l~~--~gi~~Vv~l~~~~e~~~~~~~~~~~~~~i~~~~~p~~d~~~~~~~~~~~~~~~~----i~~~~~~~~~vlV 269 (295)
.++.+++ ..+.-+|+++..... + ..+.++.+|+.|+.+.-......|..+......+. .+.....+.-|+|
T Consensus 53 l~~~l~~~~~~vgl~iDltnt~ry-y--~~~~~~~~g~~Y~K~~c~g~~~vp~~~~v~~fv~~v~~f~~~~~~~~~LI~v 129 (393)
T KOG2386|consen 53 LFELLKEHNYKVGLKIDLTNTLRY-Y--DKPELEERGVKYLKRNCPGRGVVPRTELVDKFVKLVKGFVDDTKLDDELIGV 129 (393)
T ss_pred HHHHHHhcCceEEEEEeccceeee-e--ccccccccceeEEEeccCCcccCCCccchHHHHHHHHHHHhcccCCCCEEEE
Confidence 3455555 567778888765432 2 45668888999998877655434444444443333 3334556789999
Q ss_pred ECCCCCChHHHHHHHHHHhcCCCCC
Q psy7475 270 HCKAGRTRSATLVGCYLMKLEPVPT 294 (295)
Q Consensus 270 HC~~G~~Rsg~~~~ayLm~~~~~~l 294 (295)
||.+|+.|||-++++|||..++|+.
T Consensus 130 hcthG~NrtgyLI~~yL~~~~~~s~ 154 (393)
T KOG2386|consen 130 HCTHGLNRTGYLICAYLADVGGYSS 154 (393)
T ss_pred eCCCcccccceeeeeeeeeccCccH
Confidence 9999999999999999999998864
No 88
>KOG0789|consensus
Probab=97.58 E-value=0.00022 Score=65.82 Aligned_cols=82 Identities=18% Similarity=0.118 Sum_probs=49.5
Q ss_pred ceEEEeecCCCCCCchHHHHHHHHHHHH----HHHHcCCeEEEEcCCCCcchHHHHHHHHHHh-hcc---CCChHHHHHH
Q psy7475 78 VEFLQLSTRDIFDTPDQDKLERGVDFIQ----RISKTGGTVYVHCKAGRTRSATLVGCYLMKV-TSR---RWYDRIDENI 149 (295)
Q Consensus 78 ~~~~~~~~~D~~~~~~~~~~~~~~~~i~----~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~-~~~---~~~~~~a~~~ 149 (295)
.+|++..|+|. +.|. ....++.++. ......+|++|||++|.||||++++...+.. ... .....+.+..
T Consensus 265 ~~~~~~~WPd~-~~p~--~~~~~l~~~~~~~~~~~~~~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~ 341 (415)
T KOG0789|consen 265 VHYHYINWPDH-GAPD--SVKSILPLLRQSVLELRPKQEPIEVHCSAGAGRAGTLVLIEHALIELQGPEGEPPIDEILRE 341 (415)
T ss_pred EEEeeCCCccc-cCCc--chHHHHHHHHhhhhhhcCCCCCeEEECCCCCCccchHHHHHHHHHHHhcCCCCccHHHHHHH
Confidence 35556667777 3443 1223334442 2223458999999999999999998663333 112 2336666666
Q ss_pred HHhcCCcccCCCc
Q psy7475 150 ILGALPFKRLTNK 162 (295)
Q Consensus 150 ~~~~rp~~~~~~~ 162 (295)
+|..|+....+..
T Consensus 342 iR~qR~~~vqt~~ 354 (415)
T KOG0789|consen 342 IRYQRPGAVQSPL 354 (415)
T ss_pred HHHHhhhcccchh
Confidence 7777776665533
No 89
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=97.55 E-value=0.00036 Score=64.41 Aligned_cols=102 Identities=18% Similarity=0.205 Sum_probs=76.2
Q ss_pred ccCceEEcCCcChhhH----HHHHHcCCcEEEEcccccccccccchhhhhhcCceEEEeecCCCC--CCchHHHHHHHHH
Q psy7475 29 IDENIILGALPFKRLT----NKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIF--DTPDQDKLERGVD 102 (295)
Q Consensus 29 i~~~ly~G~~~~~~~~----~~L~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~--~~~~~~~~~~~~~ 102 (295)
+..+||+|........ ..-....+..||++..... ..........++++++...- ...+...+++++.
T Consensus 292 ~~~~i~ig~~~~~l~~~~~~~~~~~~~~~~vI~~s~~~~------~~~~~~~~~~~L~l~i~~~K~gs~~LR~~LP~i~~ 365 (451)
T PF04179_consen 292 GTTGIYIGKISSNLAISKAQLPDLESEFDCVINCSESPT------PKESWPKSPKYLHLPIPSSKKGSRDLRKALPKICS 365 (451)
T ss_pred CCCCeEEeccCCccccchhhccccCCCcCEEEEcCCCcc------cccccCCCceEEeCcCCCCcccHHHHHHHHHHHHH
Confidence 4669999988662111 1112257889999987654 11233557789999997653 3345678999999
Q ss_pred HHHHHHHc--CCeEEEEcCCCCcchHHHHHHHHHHh
Q psy7475 103 FIQRISKT--GGTVYVHCKAGRTRSATLVGCYLMKV 136 (295)
Q Consensus 103 ~i~~~~~~--~~~vlVHC~~G~~Rs~~~~~~~l~~~ 136 (295)
|+...+.+ +++|+|+|..|...|+.++.+.|...
T Consensus 366 fv~~~L~~~~~~~iLV~C~sGkDlSVgVaLaILc~~ 401 (451)
T PF04179_consen 366 FVRSHLSSDPGKPILVCCDSGKDLSVGVALAILCKL 401 (451)
T ss_pred HHHHHhcccCCCcEEEEcCCcchHHHHHHHHHHHHh
Confidence 99999887 89999999999999999999988887
No 90
>KOG0793|consensus
Probab=97.28 E-value=0.00042 Score=65.46 Aligned_cols=83 Identities=16% Similarity=0.046 Sum_probs=54.7
Q ss_pred ceEEEeecCCCCCCchHHHHHHHHHHHHHHH-HcCCeEEEEcCCCCcchHHHHHHHHHHh-hccCCChHH---HHHHHHh
Q psy7475 78 VEFLQLSTRDIFDTPDQDKLERGVDFIQRIS-KTGGTVYVHCKAGRTRSATLVGCYLMKV-TSRRWYDRI---DENIILG 152 (295)
Q Consensus 78 ~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~-~~~~~vlVHC~~G~~Rs~~~~~~~l~~~-~~~~~~~~~---a~~~~~~ 152 (295)
.+|+++.|.|.........+.++-+.+.++. .+..+|+|||+.|.||||+.++..++.. +.+|..-.+ .+..+|.
T Consensus 893 TQFHfLSWp~egvPasarslLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~YiliDmvl~Rm~kGakeIDIaATlEHlRD 972 (1004)
T KOG0793|consen 893 TQFHFLSWPDEGVPASARSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYILIDMVLNRMAKGAKEIDIAATLEHLRD 972 (1004)
T ss_pred eeeeeecccccCCccchHHHHHHHHHhhhhccCCCCceEEEccCCCCccceeeeHHHHHHHHhccchhhhHHHHHHHHhh
Confidence 3688899998864444455665556666554 2347999999999999999998766543 334554444 4455555
Q ss_pred cCCcccCC
Q psy7475 153 ALPFKRLT 160 (295)
Q Consensus 153 ~rp~~~~~ 160 (295)
.||.+..+
T Consensus 973 QR~GmVaT 980 (1004)
T KOG0793|consen 973 QRPGMVAT 980 (1004)
T ss_pred cCCcceee
Confidence 56655444
No 91
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=96.75 E-value=0.0063 Score=56.34 Aligned_cols=104 Identities=18% Similarity=0.194 Sum_probs=74.4
Q ss_pred ccCeEEEcCCcChhcH----HHHHHcCCCEEEEcCcccccccccchhhhhhcCceEeeccCCCCC--CCCcHHHHHHHHH
Q psy7475 182 IDENIILGALPFKRLT----NKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIF--DTPDQDKLERGVD 255 (295)
Q Consensus 182 i~~~l~~g~~p~~~~~----~~l~~~gi~~Vv~l~~~~e~~~~~~~~~~~~~~i~~~~~p~~d~~--~~~~~~~~~~~~~ 255 (295)
.+.++++|.....-.. ..-....+..||++.+.... . .-......++++|+.... .......+.++++
T Consensus 292 ~~~~i~ig~~~~~l~~~~~~~~~~~~~~~~vI~~s~~~~~-----~-~~~~~~~~~L~l~i~~~K~gs~~LR~~LP~i~~ 365 (451)
T PF04179_consen 292 GTTGIYIGKISSNLAISKAQLPDLESEFDCVINCSESPTP-----K-ESWPKSPKYLHLPIPSSKKGSRDLRKALPKICS 365 (451)
T ss_pred CCCCeEEeccCCccccchhhccccCCCcCEEEEcCCCccc-----c-cccCCCceEEeCcCCCCcccHHHHHHHHHHHHH
Confidence 4668999876652111 11123577889998765321 0 122346678899987663 2345678899999
Q ss_pred HHHHHHhC--CCeEEEECCCCCChHHHHHHHHHHhcCC
Q psy7475 256 FIQRISKT--GGTVYVHCKAGRTRSATLVGCYLMKLEP 291 (295)
Q Consensus 256 ~i~~~~~~--~~~vlVHC~~G~~Rsg~~~~ayLm~~~~ 291 (295)
|+.....+ +.+|||+|..|+..|..++.|.|+....
T Consensus 366 fv~~~L~~~~~~~iLV~C~sGkDlSVgVaLaILc~~Fd 403 (451)
T PF04179_consen 366 FVRSHLSSDPGKPILVCCDSGKDLSVGVALAILCKLFD 403 (451)
T ss_pred HHHHHhcccCCCcEEEEcCCcchHHHHHHHHHHHHhcC
Confidence 99998777 8999999999999999999999988754
No 92
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=95.24 E-value=0.084 Score=38.26 Aligned_cols=28 Identities=29% Similarity=0.495 Sum_probs=19.4
Q ss_pred hCCCeEEEECCCCCChHHHHHHHHHHhcCCC
Q psy7475 262 KTGGTVYVHCKAGRTRSATLVGCYLMKLEPV 292 (295)
Q Consensus 262 ~~~~~vlVHC~~G~~Rsg~~~~ayLm~~~~~ 292 (295)
.++.+|+|+|..| .||.. ++.+| ...|.
T Consensus 59 ~~~~~ivvyC~~G-~rs~~-a~~~L-~~~G~ 86 (101)
T cd01518 59 LKGKKVLMYCTGG-IRCEK-ASAYL-KERGF 86 (101)
T ss_pred cCCCEEEEECCCc-hhHHH-HHHHH-HHhCC
Confidence 4568999999999 68954 44444 55554
No 93
>KOG4471|consensus
Probab=94.94 E-value=0.056 Score=50.73 Aligned_cols=36 Identities=31% Similarity=0.523 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHcCCeEEEEcCCCCcchHHHHHHH
Q psy7475 97 LERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCY 132 (295)
Q Consensus 97 ~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~~~ 132 (295)
+..|+...++.-..+.+|||||+.|..||+-+++.-
T Consensus 360 Laga~~Ia~kVe~~~~sVlVHCSDGWDRT~QlvsLA 395 (717)
T KOG4471|consen 360 LAGAVRIADKVESESRSVLVHCSDGWDRTAQLVSLA 395 (717)
T ss_pred HHHHHHHHHHHhcCCceEEEEcCCCccchHHHHHHH
Confidence 455556666666778999999999999999888643
No 94
>KOG4471|consensus
Probab=94.32 E-value=0.091 Score=49.40 Aligned_cols=37 Identities=30% Similarity=0.534 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhCCCeEEEECCCCCChHHHHHHHHH
Q psy7475 250 LERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYL 286 (295)
Q Consensus 250 ~~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg~~~~ayL 286 (295)
+..++...+...+.+.+|||||+.|=+||+-+++...
T Consensus 360 Laga~~Ia~kVe~~~~sVlVHCSDGWDRT~QlvsLA~ 396 (717)
T KOG4471|consen 360 LAGAVRIADKVESESRSVLVHCSDGWDRTAQLVSLAM 396 (717)
T ss_pred HHHHHHHHHHHhcCCceEEEEcCCCccchHHHHHHHH
Confidence 3345555666666789999999999999998877543
No 95
>PLN02160 thiosulfate sulfurtransferase
Probab=94.24 E-value=0.18 Score=38.98 Aligned_cols=28 Identities=21% Similarity=0.307 Sum_probs=19.2
Q ss_pred hCCCeEEEECCCCCChHHHHHHHHHHhcCCC
Q psy7475 262 KTGGTVYVHCKAGRTRSATLVGCYLMKLEPV 292 (295)
Q Consensus 262 ~~~~~vlVHC~~G~~Rsg~~~~ayLm~~~~~ 292 (295)
..+.+|++||..| .||. .++..| ...|.
T Consensus 79 ~~~~~IivyC~sG-~RS~-~Aa~~L-~~~G~ 106 (136)
T PLN02160 79 NPADDILVGCQSG-ARSL-KATTEL-VAAGY 106 (136)
T ss_pred CCCCcEEEECCCc-HHHH-HHHHHH-HHcCC
Confidence 4568999999999 6885 344333 45554
No 96
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=94.14 E-value=1.3 Score=38.04 Aligned_cols=191 Identities=16% Similarity=0.195 Sum_probs=103.0
Q ss_pred ceEEcCC-cChhhHHHHHHcCCcEEEEccccccc-ccccchhhhhhcCceEEEeecCCC-----CCCchHHHHHHHHHHH
Q psy7475 32 NIILGAL-PFKRLTNKLLEENVKGVVSMNEDYEL-YFANGREEWNKVGVEFLQLSTRDI-----FDTPDQDKLERGVDFI 104 (295)
Q Consensus 32 ~ly~G~~-~~~~~~~~L~~~gi~~Vv~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~-----~~~~~~~~~~~~~~~i 104 (295)
.+..|.+ ....-.+++++++|+.||+.+...-. --.+-.+.....|+.|+++-=+.. +..-..+.++++++.+
T Consensus 45 ~v~~G~l~~~~~l~~~l~~~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~eR~~~~~~~~~~~~~v~s~~~a~~~l 124 (248)
T PRK08057 45 PVRVGGFGGAEGLAAYLREEGIDLVIDATHPYAAQISANAAAACRALGIPYLRLERPSWLPQPGDRWIEVDDIEEAAEAL 124 (248)
T ss_pred eEEECCCCCHHHHHHHHHHCCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEeCCCcCCCCCCCEEEECCHHHHHHHh
Confidence 5788998 44555678888999999999875421 111123456677888887742221 1112234577777776
Q ss_pred HHHHHcCCeEEEEcCCCCcchHHHHHHHHHHhhccCCChHHHHHHHHhcCCcccCCCcccchhHHHHhhhcCCCcccc-c
Q psy7475 105 QRISKTGGTVYVHCKAGRTRSATLVGCYLMKVTSRRWYDRIDENIILGALPFKRLTNKEDRNNVFMEKVTSRRWYDRI-D 183 (295)
Q Consensus 105 ~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~~~a~~~~~~~rp~~~~~~~~~~~~~l~~~~~~~~~~~~i-~ 183 (295)
.+. ++||. ..|. ++-..... .....|-+.+.-+....- .-+ .
T Consensus 125 ~~~----~~vll--ttGs-k~l~~f~~-----------------~~~~~r~~~RvLP~~~s~-------------~g~~~ 167 (248)
T PRK08057 125 APF----RRVLL--TTGR-QPLAHFAA-----------------ILPEHRLLVRVLPPPEVL-------------LGLPR 167 (248)
T ss_pred hcc----CCEEE--ecCc-chHHHHhh-----------------cCCCCEEEEEECCCchhc-------------CCCCh
Confidence 544 56776 3443 22111000 011122222222111100 011 2
Q ss_pred CeEEEcCCcC--hhcHHHHHHcCCCEEEEcCcccccccccchhhhhhcCceEeeccCCCCCCC-CcHHHHHHHHHHHHHH
Q psy7475 184 ENIILGALPF--KRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDT-PDQDKLERGVDFIQRI 260 (295)
Q Consensus 184 ~~l~~g~~p~--~~~~~~l~~~gi~~Vv~l~~~~e~~~~~~~~~~~~~~i~~~~~p~~d~~~~-~~~~~~~~~~~~i~~~ 260 (295)
.+++....|+ ..+...+++++++.||+=.+... ++....+...+.|+...-+.=+..+.. .....++++++++...
T Consensus 168 ~~iiam~gPfs~e~n~aL~~~~~i~~lVtK~SG~~-g~~eKi~AA~~lgi~vivI~RP~~~~~~~~~~~~~e~~~~l~~~ 246 (248)
T PRK08057 168 AEIIALRGPFSLELERALLRQHRIDVVVTKNSGGA-GTEAKLEAARELGIPVVMIARPALPYADREFEDVAELVAWLRHL 246 (248)
T ss_pred hhEEEeeCCCCHHHHHHHHHHcCCCEEEEcCCCch-hhHHHHHHHHHcCCeEEEEeCCCCCCCCcccCCHHHHHHHHHHh
Confidence 3455545554 45668899999999997655443 333334556667888776644433222 3445677777777654
No 97
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=93.83 E-value=1.6 Score=37.52 Aligned_cols=202 Identities=14% Similarity=0.146 Sum_probs=102.8
Q ss_pred ceEEcCCcChhhHHHHHHcCCcEEEEccccccc-ccccchhhhhhcCceEEEee---cCCCCCCchHHHHHHHHHHHHHH
Q psy7475 32 NIILGALPFKRLTNKLLEENVKGVVSMNEDYEL-YFANGREEWNKVGVEFLQLS---TRDIFDTPDQDKLERGVDFIQRI 107 (295)
Q Consensus 32 ~ly~G~~~~~~~~~~L~~~gi~~Vv~l~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~D~~~~~~~~~~~~~~~~i~~~ 107 (295)
.+..|.+....-.+.+++.+++.||+.+...-. .-.+-.......|+.|+.+- +.+.+..-..+.++++++.+...
T Consensus 46 ~v~~g~l~~~~l~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~eR~~~~~~~~~~~v~~~~ea~~~~~~~ 125 (256)
T TIGR00715 46 TVHTGALDPQELREFLKRHSIDILVDATHPFAAQITTNATAVCKELGIPYVRFERPPLALGKNIIEVPDIEEATRVAYQP 125 (256)
T ss_pred eEEECCCCHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEEECCCCCCCCCeEEeCCHHHHHHHhhhc
Confidence 356666655454478888999999999875421 11112345667799888873 32222223344577777765431
Q ss_pred HHcCCeEEEEcCCCCcchHHHHHHHHHHhhccCCChHHHHHHHHhcCCcccCCCcccchhHHHHhhhcCCCcccccCeEE
Q psy7475 108 SKTGGTVYVHCKAGRTRSATLVGCYLMKVTSRRWYDRIDENIILGALPFKRLTNKEDRNNVFMEKVTSRRWYDRIDENII 187 (295)
Q Consensus 108 ~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~~~a~~~~~~~rp~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~l~ 187 (295)
...+++|+. ..|. ++-. .|. . .....|-+.+.-+........ .+..+ -..+++
T Consensus 126 ~~~~~~i~l--ttG~-k~l~---~f~--~------------~~~~~~~~~RvLP~~~~l~~~----~~~G~---~~~~ii 178 (256)
T TIGR00715 126 YLRGKRVFL--TAGA-SWLS---HFS--L------------SQDEAVVFVRVLPYPQALAQA----LKLGF---PSDRII 178 (256)
T ss_pred cccCCcEEE--ecCc-chHH---HHh--h------------ccCCceEEEEECCCchhhHHH----HHcCC---ChhcEE
Confidence 113467776 3443 1211 110 0 001122222222221111111 11111 123455
Q ss_pred EcCCcC--hhcHHHHHHcCCCEEEEcCcccccccccchhhhhhcCceEeeccCCCCCCC-CcHHHHHHHHHHHHHH
Q psy7475 188 LGALPF--KRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDT-PDQDKLERGVDFIQRI 260 (295)
Q Consensus 188 ~g~~p~--~~~~~~l~~~gi~~Vv~l~~~~e~~~~~~~~~~~~~~i~~~~~p~~d~~~~-~~~~~~~~~~~~i~~~ 260 (295)
....|+ ..+.+.+++++++.||+=.+....++....+...+.|+...-+.=+..+.. ...+.++++++++...
T Consensus 179 a~~gPfs~e~n~al~~~~~i~~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP~~~~~~~~~~~~~el~~~l~~~ 254 (256)
T TIGR00715 179 AMRGPFSEELEKALLREYRIDAVVTKASGEQGGELEKVKAAEALGINVIRIARPQTIPGVAIFDDISQLNQFVARL 254 (256)
T ss_pred EEeCCCCHHHHHHHHHHcCCCEEEEcCCCCccchHHHHHHHHHcCCcEEEEeCCCCCCCCccCCCHHHHHHHHHHh
Confidence 555554 456688999999999965543321222333455667887776644433222 3446677777777653
No 98
>PRK01415 hypothetical protein; Validated
Probab=93.60 E-value=0.37 Score=41.14 Aligned_cols=89 Identities=13% Similarity=0.244 Sum_probs=48.1
Q ss_pred ccCeEEEcCCcChhcHHHHHHcCCCEEEEcCcccccccccchhhhhhcCceEeeccCCCCCCCCcHHHHHHHHHHHHH--
Q psy7475 182 IDENIILGALPFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQR-- 259 (295)
Q Consensus 182 i~~~l~~g~~p~~~~~~~l~~~gi~~Vv~l~~~~e~~~~~~~~~~~~~~i~~~~~p~~d~~~~~~~~~~~~~~~~i~~-- 259 (295)
+.+....|..-++.++..+.+..=..|||++.+.|. ... |+| +. ..+..+.+.+.-++++.
T Consensus 104 ~~~~~~~g~~i~p~e~~~ll~~~~~vvIDVRn~~E~---------~~G-----hi~--gA-inip~~~f~e~~~~~~~~~ 166 (247)
T PRK01415 104 LNVDLFKGEYIEPKDWDEFITKQDVIVIDTRNDYEV---------EVG-----TFK--SA-INPNTKTFKQFPAWVQQNQ 166 (247)
T ss_pred CCccccCccccCHHHHHHHHhCCCcEEEECCCHHHH---------hcC-----CcC--CC-CCCChHHHhhhHHHHhhhh
Confidence 334334555556666766666555678999987653 111 121 11 11111222222222221
Q ss_pred HHhCCCeEEEECCCCCChHHHHHHHHHHhc
Q psy7475 260 ISKTGGTVYVHCKAGRTRSATLVGCYLMKL 289 (295)
Q Consensus 260 ~~~~~~~vlVHC~~G~~Rsg~~~~ayLm~~ 289 (295)
...++.+|+++|++| .|| ..++++|...
T Consensus 167 ~~~k~k~Iv~yCtgG-iRs-~kAa~~L~~~ 194 (247)
T PRK01415 167 ELLKGKKIAMVCTGG-IRC-EKSTSLLKSI 194 (247)
T ss_pred hhcCCCeEEEECCCC-hHH-HHHHHHHHHc
Confidence 223568999999999 588 6666776543
No 99
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=92.75 E-value=0.37 Score=35.11 Aligned_cols=71 Identities=14% Similarity=0.191 Sum_probs=42.8
Q ss_pred HHHHHcCCCEEEEcCcccccccccchhhhhh-cCce-EeeccCCCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEECCCCC
Q psy7475 198 NKLLEENVKGVVSMNEDYELYFANGREEWNK-VGVE-FLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGR 275 (295)
Q Consensus 198 ~~l~~~gi~~Vv~l~~~~e~~~~~~~~~~~~-~~i~-~~~~p~~d~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~ 275 (295)
..+...+-..+|+++++.|. .. +-.. ..++|+.+..... .... ...+.++.|+|.+|
T Consensus 13 ~~~~~~~~~~liDvR~~~e~---------~~~~i~~~~~~ip~~~~~~~~---------~~~~--~~~~~~ivv~C~~G- 71 (110)
T COG0607 13 ALLLAGEDAVLLDVREPEEY---------ERGHIPGAAINIPLSELKAAE---------NLLE--LPDDDPIVVYCASG- 71 (110)
T ss_pred HHhhccCCCEEEeccChhHh---------hhcCCCcceeeeecccchhhh---------cccc--cCCCCeEEEEeCCC-
Confidence 34445667889999987542 22 1223 5667766653110 0000 45678999999999
Q ss_pred ChHHHHHHHHHHhcC
Q psy7475 276 TRSATLVGCYLMKLE 290 (295)
Q Consensus 276 ~Rsg~~~~ayLm~~~ 290 (295)
.|| ..++.+|...+
T Consensus 72 ~rS-~~aa~~L~~~G 85 (110)
T COG0607 72 VRS-AAAAAALKLAG 85 (110)
T ss_pred CCh-HHHHHHHHHcC
Confidence 588 66666665543
No 100
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=92.05 E-value=2.6 Score=36.11 Aligned_cols=191 Identities=16% Similarity=0.243 Sum_probs=105.5
Q ss_pred ceEEcCC-cChhhHHHHHHcCCcEEEEccccccc-ccccchhhhhhcCceEEEeecCCCC-----CCchHHHHHHHHHHH
Q psy7475 32 NIILGAL-PFKRLTNKLLEENVKGVVSMNEDYEL-YFANGREEWNKVGVEFLQLSTRDIF-----DTPDQDKLERGVDFI 104 (295)
Q Consensus 32 ~ly~G~~-~~~~~~~~L~~~gi~~Vv~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~-----~~~~~~~~~~~~~~i 104 (295)
.+..|++ ....-.+++++++|+.||+.+...-. .-.+-.......|+.|+++-=+... ..-..+.++++++.+
T Consensus 46 ~v~~G~lg~~~~l~~~l~~~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~eRp~~~~~~~~~~~~v~~~~eA~~~l 125 (249)
T PF02571_consen 46 EVRVGRLGDEEGLAEFLRENGIDAVIDATHPFAAEISQNAIEACRELGIPYLRFERPSWQPEPDDNWHYVDSYEEAAELL 125 (249)
T ss_pred eEEECCCCCHHHHHHHHHhCCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEEEcCCcccCCCCeEEEeCCHHHHHHHH
Confidence 5889999 45555588888999999999875421 1111234566778888876422221 122244577777777
Q ss_pred HHHHHcCCeEEEEcCCCCcchHHHHHHHHHHhhccCCChHHHH-HHHHhcCCcccCCCcccchhHHHHhhhcCCCccccc
Q psy7475 105 QRISKTGGTVYVHCKAGRTRSATLVGCYLMKVTSRRWYDRIDE-NIILGALPFKRLTNKEDRNNVFMEKVTSRRWYDRID 183 (295)
Q Consensus 105 ~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~~~a~-~~~~~~rp~~~~~~~~~~~~~l~~~~~~~~~~~~i~ 183 (295)
.+. .+++|+.- .|. ++ +.+-. ......|-+.+.-+.... . ..+.
T Consensus 126 ~~~--~~~~iflt--tGs-k~-----------------L~~f~~~~~~~~r~~~RvLp~~~~---------~----~g~~ 170 (249)
T PF02571_consen 126 KEL--GGGRIFLT--TGS-KN-----------------LPPFVPAPLPGERLFARVLPTPES---------A----LGFP 170 (249)
T ss_pred hhc--CCCCEEEe--Cch-hh-----------------HHHHhhcccCCCEEEEEECCCccc---------c----CCCC
Confidence 443 33778773 342 11 11100 011123333332222212 0 0112
Q ss_pred -CeEEEcCCcC--hhcHHHHHHcCCCEEEEcCcccccccccchhhhhhcCceEeeccCCCCCC-CCcHHHHHHHHHHHH
Q psy7475 184 -ENIILGALPF--KRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFD-TPDQDKLERGVDFIQ 258 (295)
Q Consensus 184 -~~l~~g~~p~--~~~~~~l~~~gi~~Vv~l~~~~e~~~~~~~~~~~~~~i~~~~~p~~d~~~-~~~~~~~~~~~~~i~ 258 (295)
.+++....|+ ..+.+.+++++++.||+=.+... ++....+...+.|+...-+.=+..+. ....+.+++++++++
T Consensus 171 ~~~iia~~GPfs~e~n~al~~~~~i~~lVtK~SG~~-g~~eKi~AA~~lgi~vivI~RP~~~~~~~~~~~~~e~l~~l~ 248 (249)
T PF02571_consen 171 PKNIIAMQGPFSKELNRALFRQYGIDVLVTKESGGS-GFDEKIEAARELGIPVIVIKRPPEPYGDPVVETIEELLDWLE 248 (249)
T ss_pred hhhEEEEeCCCCHHHHHHHHHHcCCCEEEEcCCCch-hhHHHHHHHHHcCCeEEEEeCCCCCCCCcccCCHHHHHHHHh
Confidence 2455545554 45678899999999997655544 44444456667888877775444431 233366777777664
No 101
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=91.45 E-value=2.8 Score=36.55 Aligned_cols=96 Identities=17% Similarity=0.209 Sum_probs=63.2
Q ss_pred hcCCCcccccCeEEEcCCcChhcHHHHHHcCCCEEEEcCcccccccccchhhhhhcCceEeeccCCCCCCCCcHHHHHHH
Q psy7475 174 TSRRWYDRIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERG 253 (295)
Q Consensus 174 ~~~~~~~~i~~~l~~g~~p~~~~~~~l~~~gi~~Vv~l~~~~e~~~~~~~~~~~~~~i~~~~~p~~d~~~~~~~~~~~~~ 253 (295)
..-+..+.+.|.-.+|..-.+.++..+-+-.=+-||+.+...|. .+-+ +.+. ..|..+.|.++
T Consensus 97 V~lg~~ddv~p~~~vG~yl~p~~wn~~l~D~~~vviDtRN~YE~--------------~iG~--F~gA-v~p~~~tFref 159 (308)
T COG1054 97 VALGVEDDVDPLENVGTYLSPKDWNELLSDPDVVVIDTRNDYEV--------------AIGH--FEGA-VEPDIETFREF 159 (308)
T ss_pred eecCCCCCcCccccccCccCHHHHHHHhcCCCeEEEEcCcceeE--------------eeee--ecCc-cCCChhhhhhh
Confidence 33344555778777788878888877666555888888766552 1111 1222 45666777877
Q ss_pred HHHHHHHHh--CCCeEEEECCCCCChHHHHHHHHHHh
Q psy7475 254 VDFIQRISK--TGGTVYVHCKAGRTRSATLVGCYLMK 288 (295)
Q Consensus 254 ~~~i~~~~~--~~~~vlVHC~~G~~Rsg~~~~ayLm~ 288 (295)
.+++++... .+++|++.|++|+ |. =-+.+||..
T Consensus 160 P~~v~~~~~~~~~KkVvmyCTGGI-RC-EKas~~m~~ 194 (308)
T COG1054 160 PAWVEENLDLLKDKKVVMYCTGGI-RC-EKASAWMKE 194 (308)
T ss_pred HHHHHHHHHhccCCcEEEEcCCce-ee-hhhHHHHHH
Confidence 788887544 4689999999998 77 445555543
No 102
>PLN02160 thiosulfate sulfurtransferase
Probab=91.36 E-value=0.63 Score=35.89 Aligned_cols=21 Identities=24% Similarity=0.483 Sum_probs=16.0
Q ss_pred HHcCCeEEEEcCCCCcchHHHH
Q psy7475 108 SKTGGTVYVHCKAGRTRSATLV 129 (295)
Q Consensus 108 ~~~~~~vlVHC~~G~~Rs~~~~ 129 (295)
...+++|++||..| .||...+
T Consensus 78 ~~~~~~IivyC~sG-~RS~~Aa 98 (136)
T PLN02160 78 LNPADDILVGCQSG-ARSLKAT 98 (136)
T ss_pred cCCCCcEEEECCCc-HHHHHHH
Confidence 35678999999999 5776553
No 103
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=90.72 E-value=0.65 Score=42.03 Aligned_cols=34 Identities=24% Similarity=0.434 Sum_probs=23.4
Q ss_pred HHHHHHHHHhCCCeEEEECCCCCChHHHHHHHHH
Q psy7475 253 GVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYL 286 (295)
Q Consensus 253 ~~~~i~~~~~~~~~vlVHC~~G~~Rsg~~~~ayL 286 (295)
+.+.++.....|..|||||..|-+||+.+++..-
T Consensus 220 a~~i~~~l~~~~~~Vlvh~~dGwDrt~q~~sL~q 253 (353)
T PF06602_consen 220 ASRIADLLHDEGSSVLVHCSDGWDRTSQLSSLAQ 253 (353)
T ss_dssp HHHHHHHHHTT--EEEEECTTSSSHHHHHHHHHH
T ss_pred HHHHHHHhhccCceEEEEcCCCCcccHHHHHHHH
Confidence 3344444446789999999999999987766543
No 104
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=90.59 E-value=0.96 Score=32.58 Aligned_cols=19 Identities=26% Similarity=0.496 Sum_probs=14.9
Q ss_pred HcCCeEEEEcCCCCcchHHH
Q psy7475 109 KTGGTVYVHCKAGRTRSATL 128 (295)
Q Consensus 109 ~~~~~vlVHC~~G~~Rs~~~ 128 (295)
..+++|+|+|..| .||...
T Consensus 59 ~~~~~ivvyC~~G-~rs~~a 77 (101)
T cd01518 59 LKGKKVLMYCTGG-IRCEKA 77 (101)
T ss_pred cCCCEEEEECCCc-hhHHHH
Confidence 4668999999988 588654
No 105
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=90.25 E-value=0.61 Score=36.13 Aligned_cols=55 Identities=18% Similarity=0.205 Sum_probs=34.9
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHhC---CCeEEEECCCCCCh----HHHHHHHHHHhcCCCCC
Q psy7475 239 RDIFDTPDQDKLERGVDFIQRISKT---GGTVYVHCKAGRTR----SATLVGCYLMKLEPVPT 294 (295)
Q Consensus 239 ~d~~~~~~~~~~~~~~~~i~~~~~~---~~~vlVHC~~G~~R----sg~~~~ayLm~~~~~~l 294 (295)
.|+ ++-...++-+.+..+++.++. .++.+|||++.-.+ ++.+++||+|..+|||.
T Consensus 39 ~DF-GPlnL~~lyrfc~~l~~~L~~~~~~~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~sp 100 (141)
T PF14671_consen 39 ADF-GPLNLAQLYRFCCKLNKKLKSPELKKKKIVHYTSSDPKKRANAAFLIGAYAVIYLGMSP 100 (141)
T ss_dssp S-------HHHHHHHHHHHHHHHH-GGGTTSEEEEEE-S-HHHHHHHHHHHHHHHHHTS---H
T ss_pred CcC-CCccHHHHHHHHHHHHHHHcCHHhcCCeEEEECCCChhHHHHHHHHHHHHHHHhcCCCH
Confidence 555 466778888888888887665 57888998866443 68899999999999973
No 106
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=90.25 E-value=14 Score=36.05 Aligned_cols=29 Identities=24% Similarity=0.337 Sum_probs=19.4
Q ss_pred hCCCeEEEECCCCCChHHHHHHHHHHhcCCCC
Q psy7475 262 KTGGTVYVHCKAGRTRSATLVGCYLMKLEPVP 293 (295)
Q Consensus 262 ~~~~~vlVHC~~G~~Rsg~~~~ayLm~~~~~~ 293 (295)
..+.+|.++|..|. ||+.. +++++..|.+
T Consensus 221 ~~~~~VVvYC~sG~-rAa~~--~~~L~~lG~~ 249 (610)
T PRK09629 221 TPDKEVITHCQTHH-RSGFT--YLVAKALGYP 249 (610)
T ss_pred CCCCCEEEECCCCh-HHHHH--HHHHHHcCCC
Confidence 45689999999995 66543 3455666653
No 107
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=89.90 E-value=3.6 Score=35.86 Aligned_cols=28 Identities=18% Similarity=0.209 Sum_probs=17.9
Q ss_pred hCCCeEEEECCCCCChHHHHHHHHHHhcCCC
Q psy7475 262 KTGGTVYVHCKAGRTRSATLVGCYLMKLEPV 292 (295)
Q Consensus 262 ~~~~~vlVHC~~G~~Rsg~~~~ayLm~~~~~ 292 (295)
..+.+|+++|..|. |+ ..++.+| +..|.
T Consensus 229 ~~~~~ii~yC~~G~-~A-~~~~~~l-~~~G~ 256 (281)
T PRK11493 229 SFDRPIIASCGSGV-TA-AVVVLAL-ATLDV 256 (281)
T ss_pred CCCCCEEEECCcHH-HH-HHHHHHH-HHcCC
Confidence 34679999999985 55 4444444 45554
No 108
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=89.68 E-value=1.6 Score=31.32 Aligned_cols=28 Identities=21% Similarity=0.160 Sum_probs=18.8
Q ss_pred hCCCeEEEECCCCCChHHHHHHHHHHhcCCC
Q psy7475 262 KTGGTVYVHCKAGRTRSATLVGCYLMKLEPV 292 (295)
Q Consensus 262 ~~~~~vlVHC~~G~~Rsg~~~~ayLm~~~~~ 292 (295)
..+.+|+|+|..| .|| ..++..| ...|.
T Consensus 59 ~~~~~ivv~C~~G-~rs-~~aa~~L-~~~G~ 86 (100)
T cd01523 59 PDDQEVTVICAKE-GSS-QFVAELL-AERGY 86 (100)
T ss_pred CCCCeEEEEcCCC-CcH-HHHHHHH-HHcCc
Confidence 3568999999999 588 4444444 44454
No 109
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=89.37 E-value=1.4 Score=31.93 Aligned_cols=70 Identities=16% Similarity=0.214 Sum_probs=41.1
Q ss_pred HHHHHcCCcEEEEcccccccccccchhhhhh-cCce-EEEeecCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCCCC
Q psy7475 45 NKLLEENVKGVVSMNEDYELYFANGREEWNK-VGVE-FLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGR 122 (295)
Q Consensus 45 ~~L~~~gi~~Vv~l~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~ 122 (295)
..+...+-..||++.+..+ +.. +-.. ..++|+.+....... .. ...+++++|+|..|.
T Consensus 13 ~~~~~~~~~~liDvR~~~e---------~~~~~i~~~~~~ip~~~~~~~~~~---------~~--~~~~~~ivv~C~~G~ 72 (110)
T COG0607 13 ALLLAGEDAVLLDVREPEE---------YERGHIPGAAINIPLSELKAAENL---------LE--LPDDDPIVVYCASGV 72 (110)
T ss_pred HHhhccCCCEEEeccChhH---------hhhcCCCcceeeeecccchhhhcc---------cc--cCCCCeEEEEeCCCC
Confidence 3344456678999988744 222 3334 677777665311000 00 556799999999995
Q ss_pred cchHHHHHHHHHHh
Q psy7475 123 TRSATLVGCYLMKV 136 (295)
Q Consensus 123 ~Rs~~~~~~~l~~~ 136 (295)
||.. ++.+|...
T Consensus 73 -rS~~-aa~~L~~~ 84 (110)
T COG0607 73 -RSAA-AAAALKLA 84 (110)
T ss_pred -ChHH-HHHHHHHc
Confidence 7744 44444433
No 110
>KOG1089|consensus
Probab=89.28 E-value=0.74 Score=43.66 Aligned_cols=30 Identities=27% Similarity=0.460 Sum_probs=22.6
Q ss_pred HHHHHHH-cCCeEEEEcCCCCcchHHHHHHH
Q psy7475 103 FIQRISK-TGGTVYVHCKAGRTRSATLVGCY 132 (295)
Q Consensus 103 ~i~~~~~-~~~~vlVHC~~G~~Rs~~~~~~~ 132 (295)
+|.+++. +|-+|||||+.|..||.-+.+.-
T Consensus 335 ~ia~~l~~~~~sVlvhcsdGwDrT~qV~SLa 365 (573)
T KOG1089|consen 335 EIAKCLSSEGASVLVHCSDGWDRTCQVSSLA 365 (573)
T ss_pred HHHHHHHhCCCeEEEEccCCcchhHHHHHHH
Confidence 3444444 66899999999999998887643
No 111
>KOG1089|consensus
Probab=89.08 E-value=0.79 Score=43.49 Aligned_cols=25 Identities=32% Similarity=0.655 Sum_probs=20.3
Q ss_pred HHhCCCeEEEECCCCCChHHHHHHH
Q psy7475 260 ISKTGGTVYVHCKAGRTRSATLVGC 284 (295)
Q Consensus 260 ~~~~~~~vlVHC~~G~~Rsg~~~~a 284 (295)
...+|-.|||||..|-+||..++..
T Consensus 340 l~~~~~sVlvhcsdGwDrT~qV~SL 364 (573)
T KOG1089|consen 340 LSSEGASVLVHCSDGWDRTCQVSSL 364 (573)
T ss_pred HHhCCCeEEEEccCCcchhHHHHHH
Confidence 3446689999999999999777654
No 112
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=88.94 E-value=2.4 Score=30.67 Aligned_cols=81 Identities=12% Similarity=0.212 Sum_probs=45.8
Q ss_pred HcCCCEEEEcCcccccccccchhhhhhcCc-eEeeccCCCC---CCCCcHHHHHHHHHHHHHHHhCCCeEEEECCCCCCh
Q psy7475 202 EENVKGVVSMNEDYELYFANGREEWNKVGV-EFLQLSTRDI---FDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTR 277 (295)
Q Consensus 202 ~~gi~~Vv~l~~~~e~~~~~~~~~~~~~~i-~~~~~p~~d~---~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~R 277 (295)
+.+=..|||+++..+ +....| .-.++|.... ......+.+.............+.+|+++|..| .|
T Consensus 10 ~~~~~~liD~R~~~~---------~~~~hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~-~~ 79 (113)
T PF00581_consen 10 ENESVLLIDVRSPEE---------YERGHIPGAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSG-WR 79 (113)
T ss_dssp TTTTEEEEEESSHHH---------HHHSBETTEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSS-CH
T ss_pred hCCCeEEEEeCCHHH---------HHcCCCCCCccccccccccccccccccccccccccccccccccccceeeeecc-cc
Confidence 446678899987654 222222 2456666322 123334445544444444445667899999777 57
Q ss_pred HHHHHHH---HHHhcCCC
Q psy7475 278 SATLVGC---YLMKLEPV 292 (295)
Q Consensus 278 sg~~~~a---yLm~~~~~ 292 (295)
++..+++ +.+...|.
T Consensus 80 ~~~~~~~~~~~~l~~~g~ 97 (113)
T PF00581_consen 80 SGSAAAARVAWILKKLGF 97 (113)
T ss_dssp HHHHHHHHHHHHHHHTTT
T ss_pred cchhHHHHHHHHHHHcCC
Confidence 7666655 33555554
No 113
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=88.63 E-value=1.8 Score=38.52 Aligned_cols=27 Identities=19% Similarity=0.381 Sum_probs=19.7
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHHhcCCC
Q psy7475 263 TGGTVYVHCKAGRTRSATLVGCYLMKLEPV 292 (295)
Q Consensus 263 ~~~~vlVHC~~G~~Rsg~~~~ayLm~~~~~ 292 (295)
++++|+|+|.+| .|| ..++.+|.. .|.
T Consensus 170 kdk~IvvyC~~G-~Rs-~~aa~~L~~-~Gf 196 (314)
T PRK00142 170 KDKKVVMYCTGG-IRC-EKASAWMKH-EGF 196 (314)
T ss_pred CcCeEEEECCCC-cHH-HHHHHHHHH-cCC
Confidence 468999999999 588 555666654 444
No 114
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=88.48 E-value=2.1 Score=38.70 Aligned_cols=24 Identities=33% Similarity=0.626 Sum_probs=18.2
Q ss_pred HcCCeEEEEcCCCCcchHHHHHHH
Q psy7475 109 KTGGTVYVHCKAGRTRSATLVGCY 132 (295)
Q Consensus 109 ~~~~~vlVHC~~G~~Rs~~~~~~~ 132 (295)
.+|..|+|||+.|..||+-+.+.-
T Consensus 229 ~~~~~Vlvh~~dGwDrt~q~~sL~ 252 (353)
T PF06602_consen 229 DEGSSVLVHCSDGWDRTSQLSSLA 252 (353)
T ss_dssp TT--EEEEECTTSSSHHHHHHHHH
T ss_pred ccCceEEEEcCCCCcccHHHHHHH
Confidence 568999999999999997766543
No 115
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=88.36 E-value=2.4 Score=32.07 Aligned_cols=31 Identities=19% Similarity=0.393 Sum_probs=20.8
Q ss_pred HhCCCeEEEECCCCCChHHHHHHHHHHhcCCCC
Q psy7475 261 SKTGGTVYVHCKAGRTRSATLVGCYLMKLEPVP 293 (295)
Q Consensus 261 ~~~~~~vlVHC~~G~~Rsg~~~~ayLm~~~~~~ 293 (295)
..++.+|+|+|..|-.||... ++++...|..
T Consensus 83 i~~~~~vvvyC~~~G~rs~~a--~~~L~~~G~~ 113 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQSL--AWLLESLGID 113 (128)
T ss_pred cCCCCeEEEEeCCCCccHHHH--HHHHHHcCCc
Confidence 345689999997543677533 3777776653
No 116
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=87.35 E-value=3.7 Score=30.57 Aligned_cols=29 Identities=21% Similarity=-0.029 Sum_probs=19.3
Q ss_pred hCCCeEEEECCCCCChHHHHHHHHHHhcCCC
Q psy7475 262 KTGGTVYVHCKAGRTRSATLVGCYLMKLEPV 292 (295)
Q Consensus 262 ~~~~~vlVHC~~G~~Rsg~~~~ayLm~~~~~ 292 (295)
..+.+|+|+|..| |+++..++..| ...|+
T Consensus 77 ~~~~~vv~~c~~g-~~~a~~~~~~l-~~~G~ 105 (122)
T cd01448 77 SNDDTVVVYDDGG-GFFAARAWWTL-RYFGH 105 (122)
T ss_pred CCCCEEEEECCCC-CccHHHHHHHH-HHcCC
Confidence 3568999999998 55656655444 44443
No 117
>PRK05320 rhodanese superfamily protein; Provisional
Probab=86.20 E-value=3.4 Score=35.61 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=19.1
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHHhc
Q psy7475 263 TGGTVYVHCKAGRTRSATLVGCYLMKL 289 (295)
Q Consensus 263 ~~~~vlVHC~~G~~Rsg~~~~ayLm~~ 289 (295)
++.+|+++|..| .|| ..++.+|...
T Consensus 174 kdk~IvvyC~~G-~Rs-~~Aa~~L~~~ 198 (257)
T PRK05320 174 AGKTVVSFCTGG-IRC-EKAAIHMQEV 198 (257)
T ss_pred CCCeEEEECCCC-HHH-HHHHHHHHHc
Confidence 468999999999 588 6666776543
No 118
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=85.75 E-value=5.2 Score=29.74 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=18.6
Q ss_pred hCCCeEEEECCCCCChHHHHHHHHHHhcCCC
Q psy7475 262 KTGGTVYVHCKAGRTRSATLVGCYLMKLEPV 292 (295)
Q Consensus 262 ~~~~~vlVHC~~G~~Rsg~~~~ayLm~~~~~ 292 (295)
..+.+|+++|..| .||.. ++..| ...|.
T Consensus 62 ~~~~~ivv~C~~G-~rs~~-aa~~L-~~~G~ 89 (117)
T cd01522 62 GKDRPVLLLCRSG-NRSIA-AAEAA-AQAGF 89 (117)
T ss_pred CCCCeEEEEcCCC-ccHHH-HHHHH-HHCCC
Confidence 4568999999999 58854 33334 44443
No 119
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=84.68 E-value=5.9 Score=29.94 Aligned_cols=27 Identities=22% Similarity=0.484 Sum_probs=18.4
Q ss_pred HHcCCeEEEEcCCCCcchHHHHHHHHHHh
Q psy7475 108 SKTGGTVYVHCKAGRTRSATLVGCYLMKV 136 (295)
Q Consensus 108 ~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~ 136 (295)
+..+.+|+|.|..|..||...+ +++..
T Consensus 83 i~~~~~vvvyC~~~G~rs~~a~--~~L~~ 109 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQSLA--WLLES 109 (128)
T ss_pred cCCCCeEEEEeCCCCccHHHHH--HHHHH
Confidence 4567899999975545776443 55555
No 120
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=84.46 E-value=3.8 Score=29.04 Aligned_cols=27 Identities=15% Similarity=0.274 Sum_probs=18.5
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHHhcCCC
Q psy7475 263 TGGTVYVHCKAGRTRSATLVGCYLMKLEPV 292 (295)
Q Consensus 263 ~~~~vlVHC~~G~~Rsg~~~~ayLm~~~~~ 292 (295)
++.+|+++|..| .||. .++.+| ...|.
T Consensus 55 ~~~~iv~~c~~G-~rs~-~aa~~L-~~~G~ 81 (95)
T cd01534 55 RGARIVLADDDG-VRAD-MTASWL-AQMGW 81 (95)
T ss_pred CCCeEEEECCCC-ChHH-HHHHHH-HHcCC
Confidence 357899999999 5874 444444 55554
No 121
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=83.75 E-value=6.2 Score=28.73 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=18.1
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHHhcCCC
Q psy7475 263 TGGTVYVHCKAGRTRSATLVGCYLMKLEPV 292 (295)
Q Consensus 263 ~~~~vlVHC~~G~~Rsg~~~~ayLm~~~~~ 292 (295)
++.+|+|+|..|. || ..++..| +..|.
T Consensus 65 ~~~~ivv~C~~G~-rs-~~a~~~L-~~~G~ 91 (109)
T cd01533 65 PRTPIVVNCAGRT-RS-IIGAQSL-INAGL 91 (109)
T ss_pred CCCeEEEECCCCc-hH-HHHHHHH-HHCCC
Confidence 3579999999995 88 4444444 55554
No 122
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=83.48 E-value=5.1 Score=28.66 Aligned_cols=27 Identities=26% Similarity=0.487 Sum_probs=18.5
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHHhcCCC
Q psy7475 263 TGGTVYVHCKAGRTRSATLVGCYLMKLEPV 292 (295)
Q Consensus 263 ~~~~vlVHC~~G~~Rsg~~~~ayLm~~~~~ 292 (295)
++.+|+++|..| .|| ..++.+|.. .|.
T Consensus 57 ~~~~vv~~c~~g-~rs-~~~~~~l~~-~G~ 83 (101)
T cd01528 57 PDKDIVVLCHHG-GRS-MQVAQWLLR-QGF 83 (101)
T ss_pred CCCeEEEEeCCC-chH-HHHHHHHHH-cCC
Confidence 468999999998 587 444555544 454
No 123
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=82.97 E-value=2.1 Score=38.98 Aligned_cols=22 Identities=27% Similarity=0.237 Sum_probs=16.3
Q ss_pred CeEEEECCCCCChHHHHHHHHHHh
Q psy7475 265 GTVYVHCKAGRTRSATLVGCYLMK 288 (295)
Q Consensus 265 ~~vlVHC~~G~~Rsg~~~~ayLm~ 288 (295)
.+|+|||..| .|| ..++..|..
T Consensus 333 ~~Ivv~C~sG-~RS-~~Aa~~L~~ 354 (370)
T PRK05600 333 DNVVVYCASG-IRS-ADFIEKYSH 354 (370)
T ss_pred CcEEEECCCC-hhH-HHHHHHHHH
Confidence 4899999999 688 455565544
No 124
>PRK01415 hypothetical protein; Validated
Probab=82.13 E-value=7.6 Score=33.24 Aligned_cols=89 Identities=12% Similarity=0.206 Sum_probs=44.1
Q ss_pred ccCceEEcCCcChhhHHHHHHcCCcEEEEcccccccccccchhhhhhcCceEEEeecCCCCCCchHHHHHHHHHHHHH--
Q psy7475 29 IDENIILGALPFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQR-- 106 (295)
Q Consensus 29 i~~~ly~G~~~~~~~~~~L~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~-- 106 (295)
+.|..-.|..-.+.+...+.+..-..||++++..+ +....+ +..-..| ...|.++-+.+++
T Consensus 104 ~~~~~~~g~~i~p~e~~~ll~~~~~vvIDVRn~~E---------~~~Ghi-------~gAinip-~~~f~e~~~~~~~~~ 166 (247)
T PRK01415 104 LNVDLFKGEYIEPKDWDEFITKQDVIVIDTRNDYE---------VEVGTF-------KSAINPN-TKTFKQFPAWVQQNQ 166 (247)
T ss_pred CCccccCccccCHHHHHHHHhCCCcEEEECCCHHH---------HhcCCc-------CCCCCCC-hHHHhhhHHHHhhhh
Confidence 33333345555556666655544456888887654 221111 1111112 1222222222221
Q ss_pred HHHcCCeEEEEcCCCCcchHHHHHHHHHHh
Q psy7475 107 ISKTGGTVYVHCKAGRTRSATLVGCYLMKV 136 (295)
Q Consensus 107 ~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~ 136 (295)
....+++|+++|.+|. ||. .++.+|...
T Consensus 167 ~~~k~k~Iv~yCtgGi-Rs~-kAa~~L~~~ 194 (247)
T PRK01415 167 ELLKGKKIAMVCTGGI-RCE-KSTSLLKSI 194 (247)
T ss_pred hhcCCCeEEEECCCCh-HHH-HHHHHHHHc
Confidence 2346789999999885 764 444555433
No 125
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=82.08 E-value=7.3 Score=28.90 Aligned_cols=26 Identities=23% Similarity=-0.015 Sum_probs=17.5
Q ss_pred HHcCCeEEEEcCCCCcchHHHHHHHHH
Q psy7475 108 SKTGGTVYVHCKAGRTRSATLVGCYLM 134 (295)
Q Consensus 108 ~~~~~~vlVHC~~G~~Rs~~~~~~~l~ 134 (295)
...+.+|+|+|..| +++++.++..|.
T Consensus 76 ~~~~~~vv~~c~~g-~~~a~~~~~~l~ 101 (122)
T cd01448 76 ISNDDTVVVYDDGG-GFFAARAWWTLR 101 (122)
T ss_pred CCCCCEEEEECCCC-CccHHHHHHHHH
Confidence 34578999999997 555555544443
No 126
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=82.07 E-value=2.6 Score=30.42 Aligned_cols=27 Identities=26% Similarity=0.265 Sum_probs=18.1
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHHhcCCC
Q psy7475 263 TGGTVYVHCKAGRTRSATLVGCYLMKLEPV 292 (295)
Q Consensus 263 ~~~~vlVHC~~G~~Rsg~~~~ayLm~~~~~ 292 (295)
++.+|+|+|..|. ||. .+ +.++...|.
T Consensus 65 ~~~~ivv~c~~g~-~s~-~~-~~~l~~~G~ 91 (106)
T cd01519 65 KDKELIFYCKAGV-RSK-AA-AELARSLGY 91 (106)
T ss_pred CCCeEEEECCCcH-HHH-HH-HHHHHHcCC
Confidence 4679999999984 763 33 455555554
No 127
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=81.74 E-value=8.8 Score=28.46 Aligned_cols=64 Identities=17% Similarity=0.247 Sum_probs=33.0
Q ss_pred CcEEEEcccccccccccchhhhh-hcCc-eEEEeecCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcchHHH
Q psy7475 52 VKGVVSMNEDYELYFANGREEWN-KVGV-EFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATL 128 (295)
Q Consensus 52 i~~Vv~l~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~ 128 (295)
=..||++.+..+ +. ...| .-+++|+.+........ .+...+......+++|+|+|..| .||...
T Consensus 15 ~~~vIDvR~~~e---------~~~~ghIpgA~~ip~~~~~~~~~~~---~~~~~l~~~~~~~~~ivv~C~~G-~rs~~a 80 (117)
T cd01522 15 QAVLVDVRTEAE---------WKFVGGVPDAVHVAWQVYPDMEINP---NFLAELEEKVGKDRPVLLLCRSG-NRSIAA 80 (117)
T ss_pred CeEEEECCCHHH---------HhcccCCCCceecchhhccccccCH---HHHHHHHhhCCCCCeEEEEcCCC-ccHHHH
Confidence 456899987544 33 2222 23455554432111111 12223333335678999999988 477554
No 128
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=80.03 E-value=5.7 Score=29.79 Aligned_cols=26 Identities=23% Similarity=0.393 Sum_probs=18.3
Q ss_pred hCCCeEEEECC-CCCChHHHHHHHHHHhc
Q psy7475 262 KTGGTVYVHCK-AGRTRSATLVGCYLMKL 289 (295)
Q Consensus 262 ~~~~~vlVHC~-~G~~Rsg~~~~ayLm~~ 289 (295)
.+..+|+|||. +| .|| ..++.+|...
T Consensus 66 ~~~~~vv~yC~~sg-~rs-~~aa~~L~~~ 92 (121)
T cd01530 66 KKRRVLIFHCEFSS-KRG-PRMARHLRNL 92 (121)
T ss_pred CCCCEEEEECCCcc-ccH-HHHHHHHHHH
Confidence 45689999997 66 677 5566666653
No 129
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=79.38 E-value=11 Score=34.02 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=18.7
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHHhcCCC
Q psy7475 263 TGGTVYVHCKAGRTRSATLVGCYLMKLEPV 292 (295)
Q Consensus 263 ~~~~vlVHC~~G~~Rsg~~~~ayLm~~~~~ 292 (295)
++.+|+|+|..|-.||+.+ +.++...|+
T Consensus 87 ~~~~ivvyC~rgG~RS~~a--a~~L~~~G~ 114 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSV--QQWLKEAGI 114 (345)
T ss_pred CCCeEEEEECCCChHHHHH--HHHHHHcCC
Confidence 5689999997554688664 344445554
No 130
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=79.33 E-value=18 Score=25.93 Aligned_cols=72 Identities=13% Similarity=0.215 Sum_probs=42.1
Q ss_pred HcCCcEEEEcccccccccccchhhhhhcCc-eEEEeecCCC---CCCchHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcc
Q psy7475 49 EENVKGVVSMNEDYELYFANGREEWNKVGV-EFLQLSTRDI---FDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTR 124 (295)
Q Consensus 49 ~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~---~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~R 124 (295)
+.+=..||+++...+ +....+ .-+++|+.+. ........+.............+.+|+++|..|. |
T Consensus 10 ~~~~~~liD~R~~~~---------~~~~hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~-~ 79 (113)
T PF00581_consen 10 ENESVLLIDVRSPEE---------YERGHIPGAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGW-R 79 (113)
T ss_dssp TTTTEEEEEESSHHH---------HHHSBETTEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSC-H
T ss_pred hCCCeEEEEeCCHHH---------HHcCCCCCCccccccccccccccccccccccccccccccccccccceeeeeccc-c
Confidence 446678999987654 333322 3477777432 1234444555555555555567789999996664 5
Q ss_pred hHHHHH
Q psy7475 125 SATLVG 130 (295)
Q Consensus 125 s~~~~~ 130 (295)
+...+.
T Consensus 80 ~~~~~~ 85 (113)
T PF00581_consen 80 SGSAAA 85 (113)
T ss_dssp HHHHHH
T ss_pred cchhHH
Confidence 544443
No 131
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=78.72 E-value=7.4 Score=27.72 Aligned_cols=19 Identities=21% Similarity=0.202 Sum_probs=14.5
Q ss_pred HcCCeEEEEcCCCCcchHHH
Q psy7475 109 KTGGTVYVHCKAGRTRSATL 128 (295)
Q Consensus 109 ~~~~~vlVHC~~G~~Rs~~~ 128 (295)
..+++|+|+|..|. ||...
T Consensus 59 ~~~~~ivv~C~~G~-rs~~a 77 (100)
T cd01523 59 PDDQEVTVICAKEG-SSQFV 77 (100)
T ss_pred CCCCeEEEEcCCCC-cHHHH
Confidence 46789999999984 77443
No 132
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=78.45 E-value=7.2 Score=27.68 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=16.7
Q ss_pred hCCCeEEEECCCCCChHHHHHHHHHHh
Q psy7475 262 KTGGTVYVHCKAGRTRSATLVGCYLMK 288 (295)
Q Consensus 262 ~~~~~vlVHC~~G~~Rsg~~~~ayLm~ 288 (295)
..+.+|+++|..| .||. .++..|.+
T Consensus 52 ~~~~~iv~~c~~g-~~s~-~~~~~L~~ 76 (99)
T cd01527 52 VGANAIIFHCRSG-MRTQ-QNAERLAA 76 (99)
T ss_pred CCCCcEEEEeCCC-chHH-HHHHHHHH
Confidence 4468999999998 4664 44444443
No 133
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=77.64 E-value=13 Score=33.12 Aligned_cols=25 Identities=16% Similarity=0.365 Sum_probs=17.3
Q ss_pred cCCeEEEEcCCCCcchHHHHHHHHHHh
Q psy7475 110 TGGTVYVHCKAGRTRSATLVGCYLMKV 136 (295)
Q Consensus 110 ~~~~vlVHC~~G~~Rs~~~~~~~l~~~ 136 (295)
.+++|+|+|..|. ||.. ++.+|...
T Consensus 170 kdk~IvvyC~~G~-Rs~~-aa~~L~~~ 194 (314)
T PRK00142 170 KDKKVVMYCTGGI-RCEK-ASAWMKHE 194 (314)
T ss_pred CcCeEEEECCCCc-HHHH-HHHHHHHc
Confidence 5689999999885 7743 45555433
No 134
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=75.98 E-value=8.6 Score=26.68 Aligned_cols=29 Identities=24% Similarity=0.421 Sum_probs=18.2
Q ss_pred hCCCeEEEECCCCCChHHHHHHHHHHhcCCCC
Q psy7475 262 KTGGTVYVHCKAGRTRSATLVGCYLMKLEPVP 293 (295)
Q Consensus 262 ~~~~~vlVHC~~G~~Rsg~~~~ayLm~~~~~~ 293 (295)
..+.+|+|+|..| .|+ ..++..+...|.+
T Consensus 54 ~~~~~iv~~c~~g-~~a--~~~~~~l~~~G~~ 82 (100)
T smart00450 54 DKDKPVVVYCRSG-NRS--AKAAWLLRELGFK 82 (100)
T ss_pred CCCCeEEEEeCCC-cHH--HHHHHHHHHcCCC
Confidence 3568999999766 466 3334555555543
No 135
>KOG1530|consensus
Probab=73.13 E-value=6.2 Score=30.02 Aligned_cols=70 Identities=11% Similarity=0.141 Sum_probs=35.9
Q ss_pred HHHHHcCCCEEEEcCcccccccccchhhhhhcCc-eEeeccCCCCCC--CCcHHHHHHHHHHHHHHHh-CCCeEEEECCC
Q psy7475 198 NKLLEENVKGVVSMNEDYELYFANGREEWNKVGV-EFLQLSTRDIFD--TPDQDKLERGVDFIQRISK-TGGTVYVHCKA 273 (295)
Q Consensus 198 ~~l~~~gi~~Vv~l~~~~e~~~~~~~~~~~~~~i-~~~~~p~~d~~~--~~~~~~~~~~~~~i~~~~~-~~~~vlVHC~~ 273 (295)
..|-+.+=+..||++++.|. ...++ .-.++|.--.+. .-....|. +-+..... ....++++|..
T Consensus 31 k~L~~~~~~~llDVRepeEf---------k~gh~~~siNiPy~~~~~~~~l~~~eF~---kqvg~~kp~~d~eiIf~C~S 98 (136)
T KOG1530|consen 31 KNLLQHPDVVLLDVREPEEF---------KQGHIPASINIPYMSRPGAGALKNPEFL---KQVGSSKPPHDKEIIFGCAS 98 (136)
T ss_pred HHHhcCCCEEEEeecCHHHh---------hccCCcceEeccccccccccccCCHHHH---HHhcccCCCCCCcEEEEecc
Confidence 34444565778888887653 22222 355666633211 11112222 22222211 23589999999
Q ss_pred CCChHHH
Q psy7475 274 GRTRSAT 280 (295)
Q Consensus 274 G~~Rsg~ 280 (295)
|. ||.+
T Consensus 99 G~-Rs~~ 104 (136)
T KOG1530|consen 99 GV-RSLK 104 (136)
T ss_pred Cc-chhH
Confidence 94 8843
No 136
>PRK07411 hypothetical protein; Validated
Probab=72.62 E-value=7.6 Score=35.67 Aligned_cols=28 Identities=32% Similarity=0.479 Sum_probs=18.8
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHHhcCCCC
Q psy7475 263 TGGTVYVHCKAGRTRSATLVGCYLMKLEPVP 293 (295)
Q Consensus 263 ~~~~vlVHC~~G~~Rsg~~~~ayLm~~~~~~ 293 (295)
++.+|+|+|..|. ||. .++. .++..|++
T Consensus 341 ~d~~IVvyC~~G~-RS~-~aa~-~L~~~G~~ 368 (390)
T PRK07411 341 NGHRLIAHCKMGG-RSA-KALG-ILKEAGIE 368 (390)
T ss_pred CCCeEEEECCCCH-HHH-HHHH-HHHHcCCC
Confidence 4579999999984 884 4444 44555543
No 137
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=71.40 E-value=14 Score=26.81 Aligned_cols=27 Identities=26% Similarity=0.196 Sum_probs=17.1
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHHhcCCC
Q psy7475 263 TGGTVYVHCKAGRTRSATLVGCYLMKLEPV 292 (295)
Q Consensus 263 ~~~~vlVHC~~G~~Rsg~~~~ayLm~~~~~ 292 (295)
.+.+|+++|..| .||... +..| ...|.
T Consensus 57 ~~~~vvlyC~~G-~rS~~a-a~~L-~~~G~ 83 (101)
T TIGR02981 57 KNDTVKLYCNAG-RQSGMA-KDIL-LDMGY 83 (101)
T ss_pred CCCeEEEEeCCC-HHHHHH-HHHH-HHcCC
Confidence 456899999999 477443 4443 34443
No 138
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=70.55 E-value=6 Score=27.69 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=15.4
Q ss_pred CeEEEECCCCCChHHHHHHHHH
Q psy7475 265 GTVYVHCKAGRTRSATLVGCYL 286 (295)
Q Consensus 265 ~~vlVHC~~G~~Rsg~~~~ayL 286 (295)
++|++.|.+|+| |+++++.-+
T Consensus 1 ~kilvvCg~G~g-tS~ml~~ki 21 (87)
T cd05567 1 KKIVFACDAGMG-SSAMGASVL 21 (87)
T ss_pred CEEEEECCCCcc-HHHHHHHHH
Confidence 479999999999 556655433
No 139
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=70.01 E-value=9.3 Score=30.35 Aligned_cols=30 Identities=10% Similarity=-0.111 Sum_probs=21.5
Q ss_pred hCCCeEEEECCCCCChHHHHHHHHHHhcCCCC
Q psy7475 262 KTGGTVYVHCKAGRTRSATLVGCYLMKLEPVP 293 (295)
Q Consensus 262 ~~~~~vlVHC~~G~~Rsg~~~~ayLm~~~~~~ 293 (295)
.++.+|+++|..|..||.. +++++...|.+
T Consensus 114 ~~d~~IVvYC~~G~~~S~~--aa~~L~~~G~~ 143 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWN--AAKRALAYGYS 143 (162)
T ss_pred CCCCEEEEEECCCCHHHHH--HHHHHHhcCCc
Confidence 3568999999998767754 56666666653
No 140
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=69.73 E-value=23 Score=26.29 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=18.5
Q ss_pred hCCCeEEEECCCCCChHHHHHHHHHHhcCCC
Q psy7475 262 KTGGTVYVHCKAGRTRSATLVGCYLMKLEPV 292 (295)
Q Consensus 262 ~~~~~vlVHC~~G~~Rsg~~~~ayLm~~~~~ 292 (295)
..+++|+++|..| .||. .++.+ +...|.
T Consensus 70 ~~~~~ivv~C~~G-~rs~-~aa~~-L~~~G~ 97 (122)
T cd01526 70 DKDSPIYVVCRRG-NDSQ-TAVRK-LKELGL 97 (122)
T ss_pred CCCCcEEEECCCC-CcHH-HHHHH-HHHcCC
Confidence 4568999999999 4884 33333 445444
No 141
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=69.49 E-value=20 Score=26.80 Aligned_cols=43 Identities=12% Similarity=0.078 Sum_probs=29.0
Q ss_pred HHHHHHcCCcEEEEccccccc-----ccccchhhhhhcCceEEEeecC
Q psy7475 44 TNKLLEENVKGVVSMNEDYEL-----YFANGREEWNKVGVEFLQLSTR 86 (295)
Q Consensus 44 ~~~L~~~gi~~Vv~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 86 (295)
.+.|++.||+.||++..-... .-..........||.|++++-.
T Consensus 6 ~~~l~~~~i~~lVDVR~~P~S~~~~~~k~~l~~~l~~~gi~Y~~~~~L 53 (122)
T PF04343_consen 6 YDLLKKNGIRVLVDVRLWPRSRKPGFNKEDLASFLEEAGIEYVWLPEL 53 (122)
T ss_pred HHHHHHCCCeEEEEECCCCCCCCCCCCHHHHHHHHHHCCceEeechhh
Confidence 357888999999998765432 1111134445679999999864
No 142
>PRK05320 rhodanese superfamily protein; Provisional
Probab=68.09 E-value=25 Score=30.27 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=17.2
Q ss_pred cCCeEEEEcCCCCcchHHHHHHHHHHh
Q psy7475 110 TGGTVYVHCKAGRTRSATLVGCYLMKV 136 (295)
Q Consensus 110 ~~~~vlVHC~~G~~Rs~~~~~~~l~~~ 136 (295)
++++|+++|..|. ||.. ++.+|...
T Consensus 174 kdk~IvvyC~~G~-Rs~~-Aa~~L~~~ 198 (257)
T PRK05320 174 AGKTVVSFCTGGI-RCEK-AAIHMQEV 198 (257)
T ss_pred CCCeEEEECCCCH-HHHH-HHHHHHHc
Confidence 5789999999994 6644 44555433
No 143
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=68.02 E-value=31 Score=30.26 Aligned_cols=88 Identities=17% Similarity=0.234 Sum_probs=49.5
Q ss_pred cccCceEEcCCcChhhHHHHHHcCCcEEEEcccccccccccchhhhhhcCceEEEeecCCCCCCchHHHHHHHHHHHHHH
Q psy7475 28 RIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRI 107 (295)
Q Consensus 28 ~i~~~ly~G~~~~~~~~~~L~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~ 107 (295)
.|+|.--+|..-.+.+...+-...=+.||+.....+. .+..-...-.|....|.++...+.+.
T Consensus 104 dv~p~~~vG~yl~p~~wn~~l~D~~~vviDtRN~YE~-----------------~iG~F~gAv~p~~~tFrefP~~v~~~ 166 (308)
T COG1054 104 DVDPLENVGTYLSPKDWNELLSDPDVVVIDTRNDYEV-----------------AIGHFEGAVEPDIETFREFPAWVEEN 166 (308)
T ss_pred CcCccccccCccCHHHHHHHhcCCCeEEEEcCcceeE-----------------eeeeecCccCCChhhhhhhHHHHHHH
Confidence 3555555565555566655555444666666655441 11111122345556666666666665
Q ss_pred HH--cCCeEEEEcCCCCcchHHHHHHHHH
Q psy7475 108 SK--TGGTVYVHCKAGRTRSATLVGCYLM 134 (295)
Q Consensus 108 ~~--~~~~vlVHC~~G~~Rs~~~~~~~l~ 134 (295)
.+ ++++|+..|++|+ |. =-+.+||.
T Consensus 167 ~~~~~~KkVvmyCTGGI-RC-EKas~~m~ 193 (308)
T COG1054 167 LDLLKDKKVVMYCTGGI-RC-EKASAWMK 193 (308)
T ss_pred HHhccCCcEEEEcCCce-ee-hhhHHHHH
Confidence 43 4689999999998 54 23344443
No 144
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=66.77 E-value=79 Score=27.16 Aligned_cols=176 Identities=17% Similarity=0.211 Sum_probs=85.3
Q ss_pred eEEcCC-cChhhHHHHHHcCCcEEEEccccccccc-ccchhhhhhcCceEEEeecCCCC----CCchHHHHHHHHHHHHH
Q psy7475 33 IILGAL-PFKRLTNKLLEENVKGVVSMNEDYELYF-ANGREEWNKVGVEFLQLSTRDIF----DTPDQDKLERGVDFIQR 106 (295)
Q Consensus 33 ly~G~~-~~~~~~~~L~~~gi~~Vv~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~----~~~~~~~~~~~~~~i~~ 106 (295)
.-+|+. ....-.++|++++|+.||+.+...=... .+-....+..|+.|+.+.=+... ..-..+.+.++++.+.+
T Consensus 47 ~~~~G~l~~e~l~~~l~e~~i~llIDATHPyAa~iS~Na~~aake~gipy~r~eRP~~~~~gd~~~~V~d~~ea~~~~~~ 126 (257)
T COG2099 47 VRVGGFLGAEGLAAFLREEGIDLLIDATHPYAARISQNAARAAKETGIPYLRLERPPWAPNGDNWIEVADIEEAAEAAKQ 126 (257)
T ss_pred eeecCcCCHHHHHHHHHHcCCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEEECCccccCCCceEEecCHHHHHHHHhc
Confidence 334444 4445568899999999999977532111 11134456779988887543322 11223345555555443
Q ss_pred HHHcCCeEEEEcCCCCcchHHHHHHHHHHhhccCCChHHHHHHHHhcCCcccCCCcccchhHHHHhhhcCCCcccccC-e
Q psy7475 107 ISKTGGTVYVHCKAGRTRSATLVGCYLMKVTSRRWYDRIDENIILGALPFKRLTNKEDRNNVFMEKVTSRRWYDRIDE-N 185 (295)
Q Consensus 107 ~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~~~a~~~~~~~rp~~~~~~~~~~~~~l~~~~~~~~~~~~i~~-~ 185 (295)
.+++|+. ..|...=..+..+ . ..+ .--.+...+.+ .. .+...- -+.+ .
T Consensus 127 ---~~~rVfl--t~G~~~l~~f~~~----~---~~~----------~~~~Rvlp~~~----~~-~~~~~~----~~p~~~ 175 (257)
T COG2099 127 ---LGRRVFL--TTGRQNLAHFVAA----D---AHS----------HVLARVLPPPD----VL-AKCEDL----GVPPAR 175 (257)
T ss_pred ---cCCcEEE--ecCccchHHHhcC----c---ccc----------eEEEEEcCchH----HH-HHHHhc----CCChhh
Confidence 3456665 3343222111111 0 000 00000100000 00 000000 1122 3
Q ss_pred EEEcCCcC--hhcHHHHHHcCCCEEEEcCcccccccccchhhhhhcCceEeeccCC
Q psy7475 186 IILGALPF--KRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTR 239 (295)
Q Consensus 186 l~~g~~p~--~~~~~~l~~~gi~~Vv~l~~~~e~~~~~~~~~~~~~~i~~~~~p~~ 239 (295)
++....|+ ..+..++.+++|..||+=++..........+...+.|+...-+.=+
T Consensus 176 Iia~~GPfs~~~n~all~q~~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~Rp 231 (257)
T COG2099 176 IIAMRGPFSEEDNKALLEQYRIDVVVTKNSGGAGGTYEKIEAARELGIPVIMIERP 231 (257)
T ss_pred EEEecCCcChHHHHHHHHHhCCCEEEEccCCcccCcHHHHHHHHHcCCcEEEEecC
Confidence 34433444 5567889999999999876654422222234556678877666444
No 145
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=66.55 E-value=9.9 Score=26.71 Aligned_cols=29 Identities=14% Similarity=-0.025 Sum_probs=17.7
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHHhcCCC
Q psy7475 263 TGGTVYVHCKAGRTRSATLVGCYLMKLEPV 292 (295)
Q Consensus 263 ~~~~vlVHC~~G~~Rsg~~~~ayLm~~~~~ 292 (295)
+..+|+|+|..|...++..++..| ...|.
T Consensus 49 ~~~~ivl~c~~G~~~~s~~aa~~L-~~~G~ 77 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRAARRL-SELGY 77 (92)
T ss_pred CCCeEEEEeCCCCchHHHHHHHHH-HHcCc
Confidence 367999999998433334444444 44443
No 146
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=65.88 E-value=21 Score=25.34 Aligned_cols=18 Identities=28% Similarity=0.508 Sum_probs=13.7
Q ss_pred cCCeEEEEcCCCCcchHHH
Q psy7475 110 TGGTVYVHCKAGRTRSATL 128 (295)
Q Consensus 110 ~~~~vlVHC~~G~~Rs~~~ 128 (295)
++++|++.|..| .||...
T Consensus 57 ~~~~vv~~c~~g-~rs~~~ 74 (101)
T cd01528 57 PDKDIVVLCHHG-GRSMQV 74 (101)
T ss_pred CCCeEEEEeCCC-chHHHH
Confidence 478999999988 476444
No 147
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=65.47 E-value=35 Score=24.54 Aligned_cols=28 Identities=18% Similarity=0.158 Sum_probs=17.8
Q ss_pred hCCCeEEEECCCCCChHHHHHHHHHHhcCCC
Q psy7475 262 KTGGTVYVHCKAGRTRSATLVGCYLMKLEPV 292 (295)
Q Consensus 262 ~~~~~vlVHC~~G~~Rsg~~~~ayLm~~~~~ 292 (295)
..+.+++|+|..|. ||. .++. .++..|.
T Consensus 56 ~~~~~ivv~c~~g~-~s~-~a~~-~L~~~G~ 83 (108)
T PRK00162 56 DFDTPVMVMCYHGN-SSQ-GAAQ-YLLQQGF 83 (108)
T ss_pred CCCCCEEEEeCCCC-CHH-HHHH-HHHHCCc
Confidence 45679999999984 663 3333 4445444
No 148
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=64.67 E-value=34 Score=30.87 Aligned_cols=59 Identities=15% Similarity=0.139 Sum_probs=33.1
Q ss_pred HHHHHcCCCEEEEcCcccccccccchhhhhhcCceEeeccCCCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEECC
Q psy7475 198 NKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCK 272 (295)
Q Consensus 198 ~~l~~~gi~~Vv~l~~~~e~~~~~~~~~~~~~~i~~~~~p~~d~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~ 272 (295)
..|.+.|.. |||+.+..+.. |-.+..++. ..|+...|+..+...-......++|+|-|-
T Consensus 159 ~~L~~~~~~-vlDlE~~aehr-----------GS~fG~~~~----~qpsQ~~Fe~~l~~~l~~~~~~~~i~vE~E 217 (345)
T PRK11784 159 QALANAGAQ-VLDLEGLANHR-----------GSSFGRLGG----PQPSQKDFENLLAEALLKLDPARPIVVEDE 217 (345)
T ss_pred HHHHhcCCe-EEECCchhhhc-----------cccccCCCC----CCcchHHHHHHHHHHHHcCCCCCeEEEEec
Confidence 445445544 89988776531 223334443 266777777655544433334567777765
No 149
>KOG1530|consensus
Probab=63.43 E-value=15 Score=28.07 Aligned_cols=75 Identities=11% Similarity=0.092 Sum_probs=39.5
Q ss_pred hHHHHHHcCCcEEEEcccccccccccchhhhhhcCc-eEEEeecCCCCCCchHHHHHHHHHHHHHHHHc-CCeEEEEcCC
Q psy7475 43 LTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGV-EFLQLSTRDIFDTPDQDKLERGVDFIQRISKT-GGTVYVHCKA 120 (295)
Q Consensus 43 ~~~~L~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~-~~~vlVHC~~ 120 (295)
+...|.+.+-...|++++..+ +...++ .-+.+|..-.+.+--.. =+++.+.+...... .+.+.++|..
T Consensus 29 qvk~L~~~~~~~llDVRepeE---------fk~gh~~~siNiPy~~~~~~~~l~-~~eF~kqvg~~kp~~d~eiIf~C~S 98 (136)
T KOG1530|consen 29 QVKNLLQHPDVVLLDVREPEE---------FKQGHIPASINIPYMSRPGAGALK-NPEFLKQVGSSKPPHDKEIIFGCAS 98 (136)
T ss_pred HHHHHhcCCCEEEEeecCHHH---------hhccCCcceEeccccccccccccC-CHHHHHHhcccCCCCCCcEEEEecc
Confidence 445555666677888877554 333333 45566664332111111 12222333433333 3589999999
Q ss_pred CCcchHHH
Q psy7475 121 GRTRSATL 128 (295)
Q Consensus 121 G~~Rs~~~ 128 (295)
|. ||...
T Consensus 99 G~-Rs~~A 105 (136)
T KOG1530|consen 99 GV-RSLKA 105 (136)
T ss_pred Cc-chhHH
Confidence 96 77443
No 150
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=62.75 E-value=48 Score=24.11 Aligned_cols=20 Identities=10% Similarity=0.117 Sum_probs=14.3
Q ss_pred cCCeEEEEcCCCCcchHHHH
Q psy7475 110 TGGTVYVHCKAGRTRSATLV 129 (295)
Q Consensus 110 ~~~~vlVHC~~G~~Rs~~~~ 129 (295)
...+|++||..|..||...+
T Consensus 65 ~~~~iv~~C~~~g~rs~~a~ 84 (113)
T cd01443 65 GVKLAIFYCGSSQGRGPRAA 84 (113)
T ss_pred CCCEEEEECCCCCcccHHHH
Confidence 34789999998656765443
No 151
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=62.59 E-value=59 Score=25.74 Aligned_cols=26 Identities=12% Similarity=-0.049 Sum_probs=18.1
Q ss_pred HcCCeEEEEcCCCCcchHHHHHHHHHHh
Q psy7475 109 KTGGTVYVHCKAGRTRSATLVGCYLMKV 136 (295)
Q Consensus 109 ~~~~~vlVHC~~G~~Rs~~~~~~~l~~~ 136 (295)
..+.+|++.|..|..||.. ++.++..
T Consensus 114 ~~d~~IVvYC~~G~~~S~~--aa~~L~~ 139 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWN--AAKRALA 139 (162)
T ss_pred CCCCEEEEEECCCCHHHHH--HHHHHHh
Confidence 4668999999988767765 3444444
No 152
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=61.34 E-value=19 Score=26.22 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=15.5
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHH
Q psy7475 263 TGGTVYVHCKAGRTRSATLVGCYLM 287 (295)
Q Consensus 263 ~~~~vlVHC~~G~~Rsg~~~~ayLm 287 (295)
.+.+|+++|..| .||.. ++..|.
T Consensus 59 ~~~~IVlyC~~G-~rS~~-aa~~L~ 81 (104)
T PRK10287 59 KNDTVKLYCNAG-RQSGQ-AKEILS 81 (104)
T ss_pred CCCeEEEEeCCC-hHHHH-HHHHHH
Confidence 356899999988 57644 444443
No 153
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=61.18 E-value=31 Score=30.64 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=16.0
Q ss_pred CeEEEECCCCCChHHHHHHHHHHhcCCC
Q psy7475 265 GTVYVHCKAGRTRSATLVGCYLMKLEPV 292 (295)
Q Consensus 265 ~~vlVHC~~G~~Rsg~~~~ayLm~~~~~ 292 (295)
..|+|+|..|-.||... +.++...|+
T Consensus 75 ~~vvvyC~~gG~RS~~a--a~~L~~~G~ 100 (311)
T TIGR03167 75 PQPLLYCWRGGMRSGSL--AWLLAQIGF 100 (311)
T ss_pred CcEEEEECCCChHHHHH--HHHHHHcCC
Confidence 45999996443688544 344455554
No 154
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=61.15 E-value=33 Score=25.58 Aligned_cols=44 Identities=11% Similarity=0.060 Sum_probs=29.1
Q ss_pred HHHHHHcCCCEEEEcCcccc----c-ccccchhhhhhcCceEeeccCCC
Q psy7475 197 TNKLLEENVKGVVSMNEDYE----L-YFANGREEWNKVGVEFLQLSTRD 240 (295)
Q Consensus 197 ~~~l~~~gi~~Vv~l~~~~e----~-~~~~~~~~~~~~~i~~~~~p~~d 240 (295)
.+.+++.||+.+|+++.... . .-+.........||.|.++|-..
T Consensus 6 ~~~l~~~~i~~lVDVR~~P~S~~~~~~k~~l~~~l~~~gi~Y~~~~~Lg 54 (122)
T PF04343_consen 6 YDLLKKNGIRVLVDVRLWPRSRKPGFNKEDLASFLEEAGIEYVWLPELG 54 (122)
T ss_pred HHHHHHCCCeEEEEECCCCCCCCCCCCHHHHHHHHHHCCceEeechhhc
Confidence 45788899999999765432 1 11122345556799999998643
No 155
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=59.72 E-value=65 Score=23.40 Aligned_cols=17 Identities=12% Similarity=0.180 Sum_probs=12.7
Q ss_pred CCeEEEECCCCCChHHH
Q psy7475 264 GGTVYVHCKAGRTRSAT 280 (295)
Q Consensus 264 ~~~vlVHC~~G~~Rsg~ 280 (295)
..+|++||..|-.||..
T Consensus 66 ~~~iv~~C~~~g~rs~~ 82 (113)
T cd01443 66 VKLAIFYCGSSQGRGPR 82 (113)
T ss_pred CCEEEEECCCCCcccHH
Confidence 46899999976467743
No 156
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=55.16 E-value=30 Score=28.58 Aligned_cols=37 Identities=24% Similarity=0.439 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEECCCCCChHHHHHHHHHHhcC
Q psy7475 248 DKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLMKLE 290 (295)
Q Consensus 248 ~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg~~~~ayLm~~~ 290 (295)
+.|.++++.|-++ .|+|.|- |+||||.++-+.-|+-.
T Consensus 26 ~~~~~a~~~i~~~---~gkv~V~---G~GkSG~Igkk~Aa~L~ 62 (202)
T COG0794 26 EDFVRAVELILEC---KGKVFVT---GVGKSGLIGKKFAARLA 62 (202)
T ss_pred HHHHHHHHHHHhc---CCcEEEE---cCChhHHHHHHHHHHHH
Confidence 4555555554444 5789886 99999999887777643
No 157
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=54.34 E-value=16 Score=25.71 Aligned_cols=28 Identities=7% Similarity=-0.076 Sum_probs=18.8
Q ss_pred hCCCeEEEECCCCCChHHHHHHHHHHhcCCC
Q psy7475 262 KTGGTVYVHCKAGRTRSATLVGCYLMKLEPV 292 (295)
Q Consensus 262 ~~~~~vlVHC~~G~~Rsg~~~~ayLm~~~~~ 292 (295)
..+.+|+|+|..| +||.. ++.+| ...|.
T Consensus 54 ~~~~~ivv~c~~g-~~s~~-~~~~l-~~~G~ 81 (96)
T cd01529 54 GRATRYVLTCDGS-LLARF-AAQEL-LALGG 81 (96)
T ss_pred CCCCCEEEEeCCh-HHHHH-HHHHH-HHcCC
Confidence 4568999999987 67844 44555 44454
No 158
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=52.86 E-value=40 Score=29.97 Aligned_cols=20 Identities=25% Similarity=0.317 Sum_probs=13.6
Q ss_pred cCCeEEEEcCCCCcchHHHH
Q psy7475 110 TGGTVYVHCKAGRTRSATLV 129 (295)
Q Consensus 110 ~~~~vlVHC~~G~~Rs~~~~ 129 (295)
.+.+|+|+|..|..||..++
T Consensus 73 ~~~~vvvyC~~gG~RS~~aa 92 (311)
T TIGR03167 73 GPPQPLLYCWRGGMRSGSLA 92 (311)
T ss_pred CCCcEEEEECCCChHHHHHH
Confidence 34459999975556876553
No 159
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=51.50 E-value=42 Score=22.58 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=17.4
Q ss_pred hCCCeEEEECCCCCChHHHHHHHHHHhc
Q psy7475 262 KTGGTVYVHCKAGRTRSATLVGCYLMKL 289 (295)
Q Consensus 262 ~~~~~vlVHC~~G~~Rsg~~~~ayLm~~ 289 (295)
.++.+|+++|..| .|+ ..++.+|...
T Consensus 48 ~~~~~vv~~c~~~-~~a-~~~~~~l~~~ 73 (89)
T cd00158 48 DKDKPIVVYCRSG-NRS-ARAAKLLRKA 73 (89)
T ss_pred CCCCeEEEEeCCC-chH-HHHHHHHHHh
Confidence 4568999999997 455 4455554443
No 160
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=51.28 E-value=76 Score=24.67 Aligned_cols=19 Identities=32% Similarity=0.380 Sum_probs=16.6
Q ss_pred HHHHHcCCcEEEEcccccc
Q psy7475 45 NKLLEENVKGVVSMNEDYE 63 (295)
Q Consensus 45 ~~L~~~gi~~Vv~l~~~~~ 63 (295)
+.|++.|++||+-++.+..
T Consensus 78 ~~l~~~GFkhV~~lT~D~~ 96 (142)
T PF10673_consen 78 EELKESGFKHVFYLTSDSE 96 (142)
T ss_pred HHHHhcCCcEEEEEecCcc
Confidence 5688899999999998865
No 161
>COG3564 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.61 E-value=23 Score=25.30 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHcCCeEEEEcCCCC
Q psy7475 97 LERGVDFIQRISKTGGTVYVHCKAGR 122 (295)
Q Consensus 97 ~~~~~~~i~~~~~~~~~vlVHC~~G~ 122 (295)
-+.|+++|.+...+.+||++|=+.|-
T Consensus 10 T~aAl~Li~~l~~~hgpvmFHQSGGC 35 (116)
T COG3564 10 TPAALDLIAELQAEHGPVMFHQSGGC 35 (116)
T ss_pred CHHHHHHHHHHHHhcCCEEEeccCCc
Confidence 46788999999999999999966653
No 162
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=49.76 E-value=43 Score=28.57 Aligned_cols=71 Identities=15% Similarity=0.300 Sum_probs=34.6
Q ss_pred HHHHHcCCcEEEEcccccccccccchhhhhhcCceEEEeecCCCCCCc-------------------hHHHHHHHHHHHH
Q psy7475 45 NKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTP-------------------DQDKLERGVDFIQ 105 (295)
Q Consensus 45 ~~L~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-------------------~~~~~~~~~~~i~ 105 (295)
+..++.||..+.+.-.... .+.....++.++.++=.|..+.| ..+.++++++++.
T Consensus 63 ~~~~~~gi~f~stpfd~~s------~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~stl~EI~~Av~~~~ 136 (241)
T PF03102_consen 63 EYCKELGIDFFSTPFDEES------VDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTGMSTLEEIERAVEVLR 136 (241)
T ss_dssp HHHHHTT-EEEEEE-SHHH------HHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT--HHHHHHHHHHHH
T ss_pred HHHHHcCCEEEECCCCHHH------HHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECCCCCHHHHHHHHHHHH
Confidence 3344567766666554432 23334556666666655544333 2445667777774
Q ss_pred HHHHcCCeEEEEcCCCC
Q psy7475 106 RISKTGGTVYVHCKAGR 122 (295)
Q Consensus 106 ~~~~~~~~vlVHC~~G~ 122 (295)
+..+ ..-++.||.++.
T Consensus 137 ~~~~-~~l~llHC~s~Y 152 (241)
T PF03102_consen 137 EAGN-EDLVLLHCVSSY 152 (241)
T ss_dssp HHCT---EEEEEE-SSS
T ss_pred hcCC-CCEEEEecCCCC
Confidence 4332 367888886664
No 163
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=49.08 E-value=35 Score=29.82 Aligned_cols=17 Identities=29% Similarity=0.696 Sum_probs=14.4
Q ss_pred eEEEECCCCCChHHHHH
Q psy7475 266 TVYVHCKAGRTRSATLV 282 (295)
Q Consensus 266 ~vlVHC~~G~~Rsg~~~ 282 (295)
.|.|=|++|..||.+++
T Consensus 244 tIaiGCTGG~HRSV~ia 260 (284)
T PF03668_consen 244 TIAIGCTGGQHRSVAIA 260 (284)
T ss_pred EEEEEcCCCcCcHHHHH
Confidence 67789999999996665
No 164
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=48.80 E-value=23 Score=32.32 Aligned_cols=21 Identities=33% Similarity=0.331 Sum_probs=14.6
Q ss_pred CeEEEEcCCCCcchHHHHHHHHH
Q psy7475 112 GTVYVHCKAGRTRSATLVGCYLM 134 (295)
Q Consensus 112 ~~vlVHC~~G~~Rs~~~~~~~l~ 134 (295)
.+|+|||..|. ||... +..|.
T Consensus 333 ~~Ivv~C~sG~-RS~~A-a~~L~ 353 (370)
T PRK05600 333 DNVVVYCASGI-RSADF-IEKYS 353 (370)
T ss_pred CcEEEECCCCh-hHHHH-HHHHH
Confidence 38999999994 77543 34443
No 165
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=48.50 E-value=1.1e+02 Score=28.11 Aligned_cols=92 Identities=13% Similarity=0.136 Sum_probs=55.6
Q ss_pred HHHHHHcC-CCEEEEcCcccccccccchhhhhhcCceE--eeccCCCCCCCCcHHHHHHHHHHHHHHHh--CCCeEEEEC
Q psy7475 197 TNKLLEEN-VKGVVSMNEDYELYFANGREEWNKVGVEF--LQLSTRDIFDTPDQDKLERGVDFIQRISK--TGGTVYVHC 271 (295)
Q Consensus 197 ~~~l~~~g-i~~Vv~l~~~~e~~~~~~~~~~~~~~i~~--~~~p~~d~~~~~~~~~~~~~~~~i~~~~~--~~~~vlVHC 271 (295)
...+.+.+ +..+|..+.-.. .++.....+...++.. ..+.+-+. .....+..-.++..+++... +..-||||
T Consensus 23 i~~~~~~~~~~~~vi~TGQH~-d~em~~~~le~~~i~~pdy~L~i~~~-~~tl~~~t~~~i~~~~~vl~~~kPD~VlVh- 99 (383)
T COG0381 23 VKALEKDPDFELIVIHTGQHR-DYEMLDQVLELFGIRKPDYDLNIMKP-GQTLGEITGNIIEGLSKVLEEEKPDLVLVH- 99 (383)
T ss_pred HHHHHhCCCCceEEEEecccc-cHHHHHHHHHHhCCCCCCcchhcccc-CCCHHHHHHHHHHHHHHHHHhhCCCEEEEe-
Confidence 34555555 888887765432 1112223344444442 22222222 35666777777777777554 35689999
Q ss_pred CCCCChHHHHHHHHHHhcCCCCC
Q psy7475 272 KAGRTRSATLVGCYLMKLEPVPT 294 (295)
Q Consensus 272 ~~G~~Rsg~~~~ayLm~~~~~~l 294 (295)
| +++.++++|....+.+.|+
T Consensus 100 --G-DT~t~lA~alaa~~~~IpV 119 (383)
T COG0381 100 --G-DTNTTLAGALAAFYLKIPV 119 (383)
T ss_pred --C-CcchHHHHHHHHHHhCCce
Confidence 7 8899999888888877765
No 166
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=47.67 E-value=22 Score=30.69 Aligned_cols=40 Identities=15% Similarity=0.400 Sum_probs=29.0
Q ss_pred hhhhhcCceEeeccCCCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEC
Q psy7475 224 EEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHC 271 (295)
Q Consensus 224 ~~~~~~~i~~~~~p~~d~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC 271 (295)
..+++.|+.|. =|++.. .+.+.++.++.+.+..+||+||.
T Consensus 229 ~lFe~LG~~Y~-GPiDGH-------dl~~Li~~l~~~K~~~gPvllHV 268 (270)
T PF13292_consen 229 NLFEELGFDYI-GPIDGH-------DLEELIEVLENAKDIDGPVLLHV 268 (270)
T ss_dssp CCCHHCT-EEE-EEEETT--------HHHHHHHHHHHCCSSSEEEEEE
T ss_pred HHHHHcCCeEE-eccCCC-------CHHHHHHHHHHHhcCCCCEEEEE
Confidence 45778899988 466655 45667777778777789999995
No 167
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=47.31 E-value=59 Score=26.73 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEECCCCCChHHHHHHHHHH
Q psy7475 247 QDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLM 287 (295)
Q Consensus 247 ~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg~~~~ayLm 287 (295)
.+.+.++.+.+.+...++++|++. |.|+|+..+...-+
T Consensus 24 ~~~i~~a~~~l~~~l~~~~rI~~~---G~GgSa~~A~~~a~ 61 (196)
T PRK10886 24 PDAISRAAMTLVQSLLNGNKILCC---GNGTSAANAQHFAA 61 (196)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEE---ECcHHHHHHHHHHH
Confidence 366888889998888898999987 88889776655544
No 168
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=46.89 E-value=1.8e+02 Score=26.87 Aligned_cols=84 Identities=12% Similarity=0.220 Sum_probs=51.2
Q ss_pred HHcCCCEEEEcCcccccccccchhhhhhcCceEeeccCCCCCCCCcHH------------HHHHHHHHHHHHHhCC-CeE
Q psy7475 201 LEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQD------------KLERGVDFIQRISKTG-GTV 267 (295)
Q Consensus 201 ~~~gi~~Vv~l~~~~e~~~~~~~~~~~~~~i~~~~~p~~d~~~~~~~~------------~~~~~~~~i~~~~~~~-~~v 267 (295)
.++|..+|.+|....+. ....+.-++...+|+- +.|..+ .-+.+++.|++..++| .=+
T Consensus 87 ~~~GADtiMDLStGgdl------~~iR~~il~~s~vpvG---TVPiYqa~~~~~~~~~~mt~d~~~~~ie~qa~dGVDfm 157 (423)
T TIGR00190 87 IKYGADTVMDLSTGGDL------DEIRKAILDAVPVPVG---TVPIYQAAEKVHGAVEDMDEDDMFRAIEKQAKDGVDFM 157 (423)
T ss_pred HHcCCCeEeeccCCCCH------HHHHHHHHHcCCCCcc---CccHHHHHHHhcCChhhCCHHHHHHHHHHHHHhCCCEE
Confidence 34899999999876542 2222222222223322 122222 2344556777766665 567
Q ss_pred EEECC----------------CCCChHHHHHHHHHHhcCCCC
Q psy7475 268 YVHCK----------------AGRTRSATLVGCYLMKLEPVP 293 (295)
Q Consensus 268 lVHC~----------------~G~~Rsg~~~~ayLm~~~~~~ 293 (295)
-|||. .=+||-|++.++|++.+.+-+
T Consensus 158 TiH~Gi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~~~~EN 199 (423)
T TIGR00190 158 TIHAGVLLEYVERLKRSGRITGIVSRGGAILAAWMLHHHKEN 199 (423)
T ss_pred EEccchhHHHHHHHHhCCCccCeecCcHHHHHHHHHHcCCcC
Confidence 79996 126899999999999987654
No 169
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=46.87 E-value=58 Score=26.93 Aligned_cols=35 Identities=23% Similarity=0.417 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHcCCeEEEEcCCCCcchHHHHHHHHHHh
Q psy7475 96 KLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLMKV 136 (295)
Q Consensus 96 ~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~ 136 (295)
.|.++++.|.+. .|+|+|- |.||||.+.-++-|..
T Consensus 27 ~~~~a~~~i~~~---~gkv~V~---G~GkSG~Igkk~Aa~L 61 (202)
T COG0794 27 DFVRAVELILEC---KGKVFVT---GVGKSGLIGKKFAARL 61 (202)
T ss_pred HHHHHHHHHHhc---CCcEEEE---cCChhHHHHHHHHHHH
Confidence 455555555444 5788885 9999999998888877
No 170
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=46.55 E-value=1.1e+02 Score=22.11 Aligned_cols=18 Identities=28% Similarity=0.532 Sum_probs=12.6
Q ss_pred CCCeEEEECCCCCChHHH
Q psy7475 263 TGGTVYVHCKAGRTRSAT 280 (295)
Q Consensus 263 ~~~~vlVHC~~G~~Rsg~ 280 (295)
...+|++||..+-.|+..
T Consensus 61 ~~~~iv~yC~~~~~r~~~ 78 (113)
T cd01531 61 KKDTVVFHCALSQVRGPS 78 (113)
T ss_pred CCCeEEEEeecCCcchHH
Confidence 357999999844367744
No 171
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=46.45 E-value=1.1e+02 Score=22.10 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=14.5
Q ss_pred cCCeEEEEcCCCCcchHHHHH
Q psy7475 110 TGGTVYVHCKAGRTRSATLVG 130 (295)
Q Consensus 110 ~~~~vlVHC~~G~~Rs~~~~~ 130 (295)
.+.+|+++|..+-.|+...+.
T Consensus 61 ~~~~iv~yC~~~~~r~~~aa~ 81 (113)
T cd01531 61 KKDTVVFHCALSQVRGPSAAR 81 (113)
T ss_pred CCCeEEEEeecCCcchHHHHH
Confidence 457999999855467765543
No 172
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=46.36 E-value=35 Score=29.27 Aligned_cols=83 Identities=17% Similarity=0.352 Sum_probs=52.1
Q ss_pred eEEEcCC-cChhcHHHHHHcCCCEEEEcCccccc-ccccchhhhhhcCceEeeccCCCCCC-----CCcHHHHHHHHHHH
Q psy7475 185 NIILGAL-PFKRLTNKLLEENVKGVVSMNEDYEL-YFANGREEWNKVGVEFLQLSTRDIFD-----TPDQDKLERGVDFI 257 (295)
Q Consensus 185 ~l~~g~~-p~~~~~~~l~~~gi~~Vv~l~~~~e~-~~~~~~~~~~~~~i~~~~~p~~d~~~-----~~~~~~~~~~~~~i 257 (295)
.+..|.. ....-.+++++.+|+.|||.+.+.-. -..+..+...+.|+.|..+.=+.... -...+.++++++.+
T Consensus 46 ~v~~G~lg~~~~l~~~l~~~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~eRp~~~~~~~~~~~~v~~~~eA~~~l 125 (249)
T PF02571_consen 46 EVRVGRLGDEEGLAEFLRENGIDAVIDATHPFAAEISQNAIEACRELGIPYLRFERPSWQPEPDDNWHYVDSYEEAAELL 125 (249)
T ss_pred eEEECCCCCHHHHHHHHHhCCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEEEcCCcccCCCCeEEEeCCHHHHHHHH
Confidence 4677777 44445577888999999999998743 11233455667899888885443321 11235667666666
Q ss_pred HHHHhCCCeEEE
Q psy7475 258 QRISKTGGTVYV 269 (295)
Q Consensus 258 ~~~~~~~~~vlV 269 (295)
.+. .+++|++
T Consensus 126 ~~~--~~~~ifl 135 (249)
T PF02571_consen 126 KEL--GGGRIFL 135 (249)
T ss_pred hhc--CCCCEEE
Confidence 443 2366776
No 173
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=46.35 E-value=1.4e+02 Score=25.37 Aligned_cols=78 Identities=9% Similarity=0.113 Sum_probs=50.4
Q ss_pred HHHHHHcCCcEEEEcccccc--c---ccccchhhhhhcCceEEEeecCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEc
Q psy7475 44 TNKLLEENVKGVVSMNEDYE--L---YFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHC 118 (295)
Q Consensus 44 ~~~L~~~gi~~Vv~l~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC 118 (295)
.+.+++.|++..+++..... . .+..........|...+. +.|..+......+.+.++.+.+...+ .++-+||
T Consensus 121 i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~--l~Dt~G~~~P~~v~~li~~l~~~~~~-~~~~~H~ 197 (265)
T cd03174 121 IEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEIS--LKDTVGLATPEEVAELVKALREALPD-VPLGLHT 197 (265)
T ss_pred HHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEE--echhcCCcCHHHHHHHHHHHHHhCCC-CeEEEEe
Confidence 35578899999999843322 1 111122334456666555 55666677777888888888776654 7899999
Q ss_pred CCCCcc
Q psy7475 119 KAGRTR 124 (295)
Q Consensus 119 ~~G~~R 124 (295)
+.-.|=
T Consensus 198 Hn~~gl 203 (265)
T cd03174 198 HNTLGL 203 (265)
T ss_pred CCCCCh
Confidence 876553
No 174
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=45.88 E-value=1.4e+02 Score=25.68 Aligned_cols=83 Identities=8% Similarity=0.023 Sum_probs=50.5
Q ss_pred HHHHHHcCCcEEEEccccccc---ccccchhhhhhcCceEEEeecCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCC
Q psy7475 44 TNKLLEENVKGVVSMNEDYEL---YFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKA 120 (295)
Q Consensus 44 ~~~L~~~gi~~Vv~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~ 120 (295)
.+..++.|....+++...... .+..........|.. .+.+.|..+.-....+.+.+..+.+....+-++-+||+.
T Consensus 115 i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~--~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn 192 (266)
T cd07944 115 IKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPD--VFYIVDSFGSMYPEDIKRIISLLRSNLDKDIKLGFHAHN 192 (266)
T ss_pred HHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCC--EEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEeCC
Confidence 355666888877776543321 111112223344544 456677777777778888778777766544789999987
Q ss_pred CCcchHHH
Q psy7475 121 GRTRSATL 128 (295)
Q Consensus 121 G~~Rs~~~ 128 (295)
-.|=+.+-
T Consensus 193 ~~Gla~AN 200 (266)
T cd07944 193 NLQLALAN 200 (266)
T ss_pred CccHHHHH
Confidence 76544333
No 175
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=45.87 E-value=31 Score=23.98 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=17.5
Q ss_pred hCCCeEEEECCCCCChHHHHHHHHHHhcCCC
Q psy7475 262 KTGGTVYVHCKAGRTRSATLVGCYLMKLEPV 292 (295)
Q Consensus 262 ~~~~~vlVHC~~G~~Rsg~~~~ayLm~~~~~ 292 (295)
..+.+|+|+|..| .|| ..++ ..++..|.
T Consensus 54 ~~~~~ivv~c~~g-~~s-~~a~-~~l~~~G~ 81 (96)
T cd01444 54 DRDRPVVVYCYHG-NSS-AQLA-QALREAGF 81 (96)
T ss_pred CCCCCEEEEeCCC-ChH-HHHH-HHHHHcCC
Confidence 4568999999977 465 3333 34444443
No 176
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=45.79 E-value=1.6e+02 Score=26.42 Aligned_cols=80 Identities=13% Similarity=0.017 Sum_probs=46.8
Q ss_pred HHHHHHcCCcEEEEccccccc---ccccchhhhhhcCceEEEeecCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCC
Q psy7475 44 TNKLLEENVKGVVSMNEDYEL---YFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKA 120 (295)
Q Consensus 44 ~~~L~~~gi~~Vv~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~ 120 (295)
.+..++.|....+++...... .+..........|.+ .+.+.|..+.-....+.+.+..+.+....+-++-+||+.
T Consensus 120 i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~--~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~Hn 197 (333)
T TIGR03217 120 IGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGAD--CVYIVDSAGAMLPDDVRDRVRALKAVLKPETQVGFHAHH 197 (333)
T ss_pred HHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCC--EEEEccCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeCC
Confidence 344556666666666433211 111111222334443 356677777777777777777777776545789999997
Q ss_pred CCcch
Q psy7475 121 GRTRS 125 (295)
Q Consensus 121 G~~Rs 125 (295)
-.|=+
T Consensus 198 nlGla 202 (333)
T TIGR03217 198 NLSLA 202 (333)
T ss_pred CCchH
Confidence 76544
No 177
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=45.76 E-value=27 Score=27.10 Aligned_cols=23 Identities=13% Similarity=0.392 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCC
Q psy7475 99 RGVDFIQRISKTGGTVYVHCKAG 121 (295)
Q Consensus 99 ~~~~~i~~~~~~~~~vlVHC~~G 121 (295)
-++++++++...|.+|+|+|..-
T Consensus 17 ~~c~L~~k~~~~G~rvlI~~~d~ 39 (144)
T COG2927 17 AACRLAEKAWRSGWRVLIQCEDE 39 (144)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCH
Confidence 68899999999999999999543
No 178
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=45.73 E-value=29 Score=24.70 Aligned_cols=26 Identities=12% Similarity=0.211 Sum_probs=17.0
Q ss_pred CCeEEEECCCCCChHHHHHHHHHHhcCCC
Q psy7475 264 GGTVYVHCKAGRTRSATLVGCYLMKLEPV 292 (295)
Q Consensus 264 ~~~vlVHC~~G~~Rsg~~~~ayLm~~~~~ 292 (295)
+.+|+++|..|. ||..++ . .+...|.
T Consensus 65 ~~~vv~~c~~g~-~s~~~a-~-~L~~~G~ 90 (105)
T cd01525 65 GKIIVIVSHSHK-HAALFA-A-FLVKCGV 90 (105)
T ss_pred CCeEEEEeCCCc-cHHHHH-H-HHHHcCC
Confidence 578999999995 775433 3 3444443
No 179
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=45.59 E-value=21 Score=25.58 Aligned_cols=17 Identities=29% Similarity=0.608 Sum_probs=13.8
Q ss_pred CeEEEECCCCCChHHHHH
Q psy7475 265 GTVYVHCKAGRTRSATLV 282 (295)
Q Consensus 265 ~~vlVHC~~G~~Rsg~~~ 282 (295)
.+||+-|.+|.+ |..++
T Consensus 4 ~~ILl~C~~G~s-SS~l~ 20 (95)
T TIGR00853 4 TNILLLCAAGMS-TSLLV 20 (95)
T ss_pred cEEEEECCCchh-HHHHH
Confidence 579999999998 65554
No 180
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=45.46 E-value=19 Score=25.70 Aligned_cols=17 Identities=24% Similarity=0.452 Sum_probs=13.4
Q ss_pred eEEEECCCCCChHHHHHH
Q psy7475 266 TVYVHCKAGRTRSATLVG 283 (295)
Q Consensus 266 ~vlVHC~~G~~Rsg~~~~ 283 (295)
+||+-|.+|++=| ++++
T Consensus 4 kILvvCgsG~~TS-~m~~ 20 (94)
T PRK10310 4 KIIVACGGAVATS-TMAA 20 (94)
T ss_pred eEEEECCCchhHH-HHHH
Confidence 6999999999845 5543
No 181
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=45.12 E-value=60 Score=26.69 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEEcCCCCcchHHHHHHHHH
Q psy7475 94 QDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLM 134 (295)
Q Consensus 94 ~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~ 134 (295)
.+.+.++++.+.+.+.++++|++. |.|+|++.+.-+-.
T Consensus 24 ~~~i~~a~~~l~~~l~~~~rI~~~---G~GgSa~~A~~~a~ 61 (196)
T PRK10886 24 PDAISRAAMTLVQSLLNGNKILCC---GNGTSAANAQHFAA 61 (196)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEE---ECcHHHHHHHHHHH
Confidence 366889999999999999999985 77888877654443
No 182
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=45.05 E-value=27 Score=24.67 Aligned_cols=28 Identities=21% Similarity=0.213 Sum_probs=18.8
Q ss_pred hCCCeEEEECCCCCChHHHHHHHHHHhcCCC
Q psy7475 262 KTGGTVYVHCKAGRTRSATLVGCYLMKLEPV 292 (295)
Q Consensus 262 ~~~~~vlVHC~~G~~Rsg~~~~ayLm~~~~~ 292 (295)
..+.+|+|+|..| .||. . ++..+...|.
T Consensus 59 ~~~~~ivv~c~~g-~~s~-~-~~~~l~~~G~ 86 (103)
T cd01447 59 AEDKPFVFYCASG-WRSA-L-AGKTLQDMGL 86 (103)
T ss_pred CCCCeEEEEcCCC-CcHH-H-HHHHHHHcCh
Confidence 4568999999988 5774 3 3455555553
No 183
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=44.83 E-value=99 Score=28.17 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=18.8
Q ss_pred hCCCeEEEECCCCCChHHHHHHHHHHhcCCC
Q psy7475 262 KTGGTVYVHCKAGRTRSATLVGCYLMKLEPV 292 (295)
Q Consensus 262 ~~~~~vlVHC~~G~~Rsg~~~~ayLm~~~~~ 292 (295)
.++.+|+|+|..| .||. . ++.+++..|.
T Consensus 55 ~~~~~IvvyC~~G-~rs~-~-aa~~L~~~G~ 82 (376)
T PRK08762 55 DRDREIVLICASG-TRSA-H-AAATLRELGY 82 (376)
T ss_pred CCCCeEEEEcCCC-cHHH-H-HHHHHHHcCC
Confidence 4578999999988 4774 3 3444555554
No 184
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=44.33 E-value=1.8e+02 Score=26.08 Aligned_cols=80 Identities=11% Similarity=-0.030 Sum_probs=48.8
Q ss_pred HHHHHHcCCcEEEEccccccc---ccccchhhhhhcCceEEEeecCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCC
Q psy7475 44 TNKLLEENVKGVVSMNEDYEL---YFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKA 120 (295)
Q Consensus 44 ~~~L~~~gi~~Vv~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~ 120 (295)
.+..++.|....+++...... .+..........|.+ .+.+.|..+.-....+.+.++.+.+....+.++-+||+.
T Consensus 121 i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~--~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~Hn 198 (337)
T PRK08195 121 IGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQ--CVYVVDSAGALLPEDVRDRVRALRAALKPDTQVGFHGHN 198 (337)
T ss_pred HHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCC--EEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 345666777777776543321 111111223344544 456777777777778887777777776546789999987
Q ss_pred CCcch
Q psy7475 121 GRTRS 125 (295)
Q Consensus 121 G~~Rs 125 (295)
-.|=+
T Consensus 199 nlGla 203 (337)
T PRK08195 199 NLGLG 203 (337)
T ss_pred CcchH
Confidence 76544
No 185
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=43.97 E-value=45 Score=25.63 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHcCCeEEEEcCCC
Q psy7475 97 LERGVDFIQRISKTGGTVYVHCKAG 121 (295)
Q Consensus 97 ~~~~~~~i~~~~~~~~~vlVHC~~G 121 (295)
..-++++++++.++|++|+|+|...
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~ 39 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDE 39 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSH
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 4667899999999999999999543
No 186
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=43.54 E-value=47 Score=26.58 Aligned_cols=31 Identities=23% Similarity=0.292 Sum_probs=24.0
Q ss_pred cHHHHHHHHHHHHHHHhCCCeEEEECCCCCChHH
Q psy7475 246 DQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSA 279 (295)
Q Consensus 246 ~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg 279 (295)
..+.+.++.+.|-+..++|++||+. |.|+|.
T Consensus 23 l~~~I~~aa~~i~~~l~~G~Kvl~c---GNGgSa 53 (176)
T COG0279 23 LIEAIERAAQLLVQSLLNGNKVLAC---GNGGSA 53 (176)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEEEE---CCCcch
Confidence 3467788888888899999999986 555664
No 187
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=43.39 E-value=43 Score=23.33 Aligned_cols=24 Identities=17% Similarity=0.083 Sum_probs=15.2
Q ss_pred cCCeEEEEcCCCCcchHHHHHHHH
Q psy7475 110 TGGTVYVHCKAGRTRSATLVGCYL 133 (295)
Q Consensus 110 ~~~~vlVHC~~G~~Rs~~~~~~~l 133 (295)
.+.+|+|.|..|...++..++..|
T Consensus 49 ~~~~ivl~c~~G~~~~s~~aa~~L 72 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRAARRL 72 (92)
T ss_pred CCCeEEEEeCCCCchHHHHHHHHH
Confidence 367999999988533334444333
No 188
>PRK13938 phosphoheptose isomerase; Provisional
Probab=43.02 E-value=68 Score=26.36 Aligned_cols=43 Identities=14% Similarity=0.079 Sum_probs=33.8
Q ss_pred CchHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcchHHHHHHHHHHh
Q psy7475 91 TPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLMKV 136 (295)
Q Consensus 91 ~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~ 136 (295)
....+.+.++.+.+.+.+.+|++|++- |.|+|+.++.-+-.+.
T Consensus 25 ~~~~~~~~~~a~~~~~~l~~g~rI~i~---G~G~S~~~A~~fa~~L 67 (196)
T PRK13938 25 RVLLEAARAIGDRLIAGYRAGARVFMC---GNGGSAADAQHFAAEL 67 (196)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHHHHHHHHc
Confidence 456677888899999999999999985 7788887776655544
No 189
>PRK07411 hypothetical protein; Validated
Probab=42.42 E-value=45 Score=30.62 Aligned_cols=17 Identities=47% Similarity=0.817 Sum_probs=13.4
Q ss_pred cCCeEEEEcCCCCcchHH
Q psy7475 110 TGGTVYVHCKAGRTRSAT 127 (295)
Q Consensus 110 ~~~~vlVHC~~G~~Rs~~ 127 (295)
++++|+|+|..|. ||..
T Consensus 341 ~d~~IVvyC~~G~-RS~~ 357 (390)
T PRK07411 341 NGHRLIAHCKMGG-RSAK 357 (390)
T ss_pred CCCeEEEECCCCH-HHHH
Confidence 5689999998875 7744
No 190
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=42.33 E-value=35 Score=29.51 Aligned_cols=40 Identities=15% Similarity=0.387 Sum_probs=28.5
Q ss_pred hhhhhcCceEEEeecCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEc
Q psy7475 71 EEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHC 118 (295)
Q Consensus 71 ~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC 118 (295)
..++..|++|.- |++.++ +++.++.++.+.+..+||+||.
T Consensus 229 ~lFe~LG~~Y~G-PiDGHd-------l~~Li~~l~~~K~~~gPvllHV 268 (270)
T PF13292_consen 229 NLFEELGFDYIG-PIDGHD-------LEELIEVLENAKDIDGPVLLHV 268 (270)
T ss_dssp CCCHHCT-EEEE-EEETT--------HHHHHHHHHHHCCSSSEEEEEE
T ss_pred HHHHHcCCeEEe-ccCCCC-------HHHHHHHHHHHhcCCCCEEEEE
Confidence 457788999876 776653 5566667777777789999996
No 191
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=42.27 E-value=49 Score=28.99 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=13.6
Q ss_pred HhCCCeEEEECCCCCChH
Q psy7475 261 SKTGGTVYVHCKAGRTRS 278 (295)
Q Consensus 261 ~~~~~~vlVHC~~G~~Rs 278 (295)
....++|.++|..|..=|
T Consensus 231 i~~~~~vI~yCgsG~~As 248 (285)
T COG2897 231 IDPDKEVIVYCGSGVRAS 248 (285)
T ss_pred CCCCCCEEEEcCCchHHH
Confidence 445689999999996433
No 192
>PRK13938 phosphoheptose isomerase; Provisional
Probab=42.17 E-value=74 Score=26.14 Aligned_cols=42 Identities=14% Similarity=0.067 Sum_probs=31.2
Q ss_pred CCcHHHHHHHHHHHHHHHhCCCeEEEECCCCCChHHHHHHHHHHh
Q psy7475 244 TPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLMK 288 (295)
Q Consensus 244 ~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg~~~~ayLm~ 288 (295)
....+.+.++.+.+.+..++|++|++- |.|+|+.++...-.+
T Consensus 25 ~~~~~~~~~~a~~~~~~l~~g~rI~i~---G~G~S~~~A~~fa~~ 66 (196)
T PRK13938 25 RVLLEAARAIGDRLIAGYRAGARVFMC---GNGGSAADAQHFAAE 66 (196)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHHHHHHHH
Confidence 445567788888888888899999987 777887666555443
No 193
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=42.17 E-value=55 Score=26.18 Aligned_cols=32 Identities=25% Similarity=0.422 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcchHH
Q psy7475 93 DQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSAT 127 (295)
Q Consensus 93 ~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~ 127 (295)
..+.+.++.+.|-+.+..|++|++ | |.|+|++
T Consensus 23 l~~~I~~aa~~i~~~l~~G~Kvl~-c--GNGgSaa 54 (176)
T COG0279 23 LIEAIERAAQLLVQSLLNGNKVLA-C--GNGGSAA 54 (176)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEEE-E--CCCcchh
Confidence 456788888889999999999988 4 4445543
No 194
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=42.15 E-value=2e+02 Score=26.63 Aligned_cols=84 Identities=13% Similarity=0.272 Sum_probs=50.5
Q ss_pred HHcCCCEEEEcCcccccccccchhhhhhcCceEeeccCCCCCCCCcHH---------------HHHHHHHHHHHHHhCC-
Q psy7475 201 LEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQD---------------KLERGVDFIQRISKTG- 264 (295)
Q Consensus 201 ~~~gi~~Vv~l~~~~e~~~~~~~~~~~~~~i~~~~~p~~d~~~~~~~~---------------~~~~~~~~i~~~~~~~- 264 (295)
.++|..+|.+|....+. ....+.-++...+|+- +.|..+ .-+.+++.|++..++|
T Consensus 87 ~~~GADtiMDLStggdl------~~iR~~il~~s~vpvG---TVPiYqa~~~~~~k~~~~~~mt~d~~~~~ie~qa~~GV 157 (431)
T PRK13352 87 VKYGADTIMDLSTGGDL------DEIRRAIIEASPVPVG---TVPIYQAAVEAARKYGSVVDMTEDDLFDVIEKQAKDGV 157 (431)
T ss_pred HHcCCCeEeeccCCCCH------HHHHHHHHHcCCCCCc---ChhHHHHHHHHHhcCCChhhCCHHHHHHHHHHHHHhCC
Confidence 34899999999876542 2222222222223322 122221 2344556677766665
Q ss_pred CeEEEECC----------------CCCChHHHHHHHHHHhcCCCC
Q psy7475 265 GTVYVHCK----------------AGRTRSATLVGCYLMKLEPVP 293 (295)
Q Consensus 265 ~~vlVHC~----------------~G~~Rsg~~~~ayLm~~~~~~ 293 (295)
.=+-|||. .=+||-|.|.++|++.+.+-+
T Consensus 158 DfmTiHcGi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~n~~EN 202 (431)
T PRK13352 158 DFMTIHCGVTRETLERLKKSGRIMGIVSRGGSFLAAWMLHNNKEN 202 (431)
T ss_pred CEEEEccchhHHHHHHHHhcCCccCeecCCHHHHHHHHHHcCCcC
Confidence 56789995 226899999999999887654
No 195
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=42.07 E-value=50 Score=28.96 Aligned_cols=36 Identities=22% Similarity=0.501 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHH----HhCCC---eEEEECCCCCChHHHHH
Q psy7475 247 QDKLERGVDFIQRI----SKTGG---TVYVHCKAGRTRSATLV 282 (295)
Q Consensus 247 ~~~~~~~~~~i~~~----~~~~~---~vlVHC~~G~~Rsg~~~ 282 (295)
.+.++.+.++++.. .+.|+ .|-|=|++|..||.+++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~igCtGG~HRSV~~~ 263 (288)
T PRK05416 221 EEFLDKIRDLLEFWLPGYEREGKSYLTIAIGCTGGQHRSVAIA 263 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEEecCCCcccHHHHH
Confidence 34455555555542 22332 37789999999996664
No 196
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=41.83 E-value=1.9e+02 Score=24.76 Aligned_cols=79 Identities=10% Similarity=-0.020 Sum_probs=44.9
Q ss_pred HHHHHHcCCcEEEEccccccc---ccccchhhhhhcCceEEEeecCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCC
Q psy7475 44 TNKLLEENVKGVVSMNEDYEL---YFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKA 120 (295)
Q Consensus 44 ~~~L~~~gi~~Vv~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~ 120 (295)
.+..++.|....+++...... .+....+.....|... +.+.|..+.-....+.+.++.+.+.... .++-+||+.
T Consensus 118 i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~--i~l~DT~G~~~P~~v~~lv~~l~~~~~~-~~l~~H~Hn 194 (263)
T cd07943 118 IGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADC--VYVTDSAGAMLPDDVRERVRALREALDP-TPVGFHGHN 194 (263)
T ss_pred HHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCE--EEEcCCCCCcCHHHHHHHHHHHHHhCCC-ceEEEEecC
Confidence 344556777776766332211 1111112223345543 4567776677777777777777665432 489999997
Q ss_pred CCcch
Q psy7475 121 GRTRS 125 (295)
Q Consensus 121 G~~Rs 125 (295)
-.|=+
T Consensus 195 ~~GlA 199 (263)
T cd07943 195 NLGLA 199 (263)
T ss_pred CcchH
Confidence 76644
No 197
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=41.39 E-value=1.2e+02 Score=20.87 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=17.0
Q ss_pred hCCCeEEEECCCCCChHHHHHHHHHHhcCC
Q psy7475 262 KTGGTVYVHCKAGRTRSATLVGCYLMKLEP 291 (295)
Q Consensus 262 ~~~~~vlVHC~~G~~Rsg~~~~ayLm~~~~ 291 (295)
..+.+|+++|..| .|+ ..++..| +..|
T Consensus 49 ~~~~~vvl~c~~g-~~a-~~~a~~L-~~~G 75 (90)
T cd01524 49 PKDKEIIVYCAVG-LRG-YIAARIL-TQNG 75 (90)
T ss_pred CCCCcEEEEcCCC-hhH-HHHHHHH-HHCC
Confidence 4568999999987 355 4444444 4443
No 198
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=40.95 E-value=68 Score=28.89 Aligned_cols=20 Identities=40% Similarity=0.790 Sum_probs=15.2
Q ss_pred HHHhCCCeEEEECCCCCChH
Q psy7475 259 RISKTGGTVYVHCKAGRTRS 278 (295)
Q Consensus 259 ~~~~~~~~vlVHC~~G~~Rs 278 (295)
+....|..||.||.+|..+|
T Consensus 143 ~~I~~g~~ILThc~sg~lat 162 (339)
T PRK06036 143 KLLEDGDTVLTHCNAGRLAC 162 (339)
T ss_pred HHccCCCEEEEecCCccccc
Confidence 34456788999999997665
No 199
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=40.40 E-value=59 Score=27.85 Aligned_cols=81 Identities=19% Similarity=0.295 Sum_probs=49.5
Q ss_pred eEEEcCC-cChhcHHHHHHcCCCEEEEcCcccccc-cccchhhhhhcCceEeeccCCCCC-----CCCcHHHHHHHHHHH
Q psy7475 185 NIILGAL-PFKRLTNKLLEENVKGVVSMNEDYELY-FANGREEWNKVGVEFLQLSTRDIF-----DTPDQDKLERGVDFI 257 (295)
Q Consensus 185 ~l~~g~~-p~~~~~~~l~~~gi~~Vv~l~~~~e~~-~~~~~~~~~~~~i~~~~~p~~d~~-----~~~~~~~~~~~~~~i 257 (295)
.+..|.. ....-.+++++++|+.|||.+.+.-.. ..+..+...+.++.|..+.=+... .-...+.++++++.+
T Consensus 45 ~v~~G~l~~~~~l~~~l~~~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~eR~~~~~~~~~~~~~v~s~~~a~~~l 124 (248)
T PRK08057 45 PVRVGGFGGAEGLAAYLREEGIDLVIDATHPYAAQISANAAAACRALGIPYLRLERPSWLPQPGDRWIEVDDIEEAAEAL 124 (248)
T ss_pred eEEECCCCCHHHHHHHHHHCCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEeCCCcCCCCCCCEEEECCHHHHHHHh
Confidence 4566776 334455778889999999999987541 123345566778888888543321 011234566666665
Q ss_pred HHHHhCCCeEEE
Q psy7475 258 QRISKTGGTVYV 269 (295)
Q Consensus 258 ~~~~~~~~~vlV 269 (295)
.+. ++|+.
T Consensus 125 ~~~----~~vll 132 (248)
T PRK08057 125 APF----RRVLL 132 (248)
T ss_pred hcc----CCEEE
Confidence 443 45665
No 200
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=40.15 E-value=1.7e+02 Score=26.95 Aligned_cols=81 Identities=12% Similarity=0.235 Sum_probs=47.4
Q ss_pred HHHcCCcEEEEcccccccccccchhhhhhcCceEEEeecCCCCCCchHH------------HHHHHHHHHHHHHHcC-Ce
Q psy7475 47 LLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQD------------KLERGVDFIQRISKTG-GT 113 (295)
Q Consensus 47 L~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~------------~~~~~~~~i~~~~~~~-~~ 113 (295)
..++|..+|.+|+...++ ......=++...+|+. ..|+.+ .-+...+.|+++.++| -=
T Consensus 86 A~~~GADtiMDLStGgdl------~~iR~~il~~s~vpvG---TVPiYqa~~~~~~~~~~mt~d~~~~~ie~qa~dGVDf 156 (423)
T TIGR00190 86 AIKYGADTVMDLSTGGDL------DEIRKAILDAVPVPVG---TVPIYQAAEKVHGAVEDMDEDDMFRAIEKQAKDGVDF 156 (423)
T ss_pred HHHcCCCeEeeccCCCCH------HHHHHHHHHcCCCCcc---CccHHHHHHHhcCChhhCCHHHHHHHHHHHHHhCCCE
Confidence 344899999999987763 1111111122222221 122222 1234456667776666 45
Q ss_pred EEEEcC----------------CCCcchHHHHHHHHHHh
Q psy7475 114 VYVHCK----------------AGRTRSATLVGCYLMKV 136 (295)
Q Consensus 114 vlVHC~----------------~G~~Rs~~~~~~~l~~~ 136 (295)
+-|||. .=+||.|++.++|++..
T Consensus 157 mTiH~Gi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~~ 195 (423)
T TIGR00190 157 MTIHAGVLLEYVERLKRSGRITGIVSRGGAILAAWMLHH 195 (423)
T ss_pred EEEccchhHHHHHHHHhCCCccCeecCcHHHHHHHHHHc
Confidence 889996 22689999999998877
No 201
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=39.37 E-value=54 Score=25.35 Aligned_cols=26 Identities=15% Similarity=0.248 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHcCCeEEEEcCCC
Q psy7475 96 KLERGVDFIQRISKTGGTVYVHCKAG 121 (295)
Q Consensus 96 ~~~~~~~~i~~~~~~~~~vlVHC~~G 121 (295)
...-++++++++..+|.+|+|+|...
T Consensus 14 ~~~~~c~L~~ka~~~g~rv~I~~~d~ 39 (142)
T PRK05728 14 LEALLCELAEKALRAGWRVLVQCEDE 39 (142)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 45668899999999999999999544
No 202
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=39.20 E-value=69 Score=28.04 Aligned_cols=19 Identities=26% Similarity=0.571 Sum_probs=16.2
Q ss_pred eEEEEcCCCCcchHHHHHH
Q psy7475 113 TVYVHCKAGRTRSATLVGC 131 (295)
Q Consensus 113 ~vlVHC~~G~~Rs~~~~~~ 131 (295)
.|-|=|++|..||++++=.
T Consensus 244 tIaiGCTGG~HRSV~iae~ 262 (284)
T PF03668_consen 244 TIAIGCTGGQHRSVAIAER 262 (284)
T ss_pred EEEEEcCCCcCcHHHHHHH
Confidence 5788899999999988743
No 203
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=39.15 E-value=17 Score=26.19 Aligned_cols=10 Identities=40% Similarity=1.185 Sum_probs=8.8
Q ss_pred CeEEEEcCCC
Q psy7475 112 GTVYVHCKAG 121 (295)
Q Consensus 112 ~~vlVHC~~G 121 (295)
.+++|||+-|
T Consensus 86 ~~~yIhCsIG 95 (97)
T PF10302_consen 86 PRIYIHCSIG 95 (97)
T ss_pred CeEEEEEecc
Confidence 6899999877
No 204
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=37.97 E-value=34 Score=25.49 Aligned_cols=22 Identities=18% Similarity=0.456 Sum_probs=15.0
Q ss_pred HHcCCeEEEEcC-CCCcchHHHHH
Q psy7475 108 SKTGGTVYVHCK-AGRTRSATLVG 130 (295)
Q Consensus 108 ~~~~~~vlVHC~-~G~~Rs~~~~~ 130 (295)
...+.+|+|||. +| .||+.++.
T Consensus 65 ~~~~~~vv~yC~~sg-~rs~~aa~ 87 (121)
T cd01530 65 KKKRRVLIFHCEFSS-KRGPRMAR 87 (121)
T ss_pred cCCCCEEEEECCCcc-ccHHHHHH
Confidence 345789999997 55 57655433
No 205
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=37.31 E-value=1.2e+02 Score=27.84 Aligned_cols=89 Identities=12% Similarity=0.146 Sum_probs=44.5
Q ss_pred HHHcCCcEEEEcccccccccccchhhhhhcCceEEEeecCCC----CCCchHHHHHHHHHHHHHHHHcC-CeEEEEcC--
Q psy7475 47 LLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDI----FDTPDQDKLERGVDFIQRISKTG-GTVYVHCK-- 119 (295)
Q Consensus 47 L~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~----~~~~~~~~~~~~~~~i~~~~~~~-~~vlVHC~-- 119 (295)
..+.|..+|.+|+...++.-. .........+-.=.+|+.+. .+......-+.+.+.|+++.++| -=+-|||.
T Consensus 85 A~~~GADtvMDLStggdl~~i-R~~il~~~~vpvGTVPiYqa~~~~~~~~~~~t~d~~~~~ie~qa~~GVDfmtiH~git 163 (420)
T PF01964_consen 85 AEKAGADTVMDLSTGGDLDEI-RRAILENSPVPVGTVPIYQAAIRKGGSIVDMTEDDFFDVIEKQAKDGVDFMTIHCGIT 163 (420)
T ss_dssp HHHTT-SEEEE---STTHHHH-HHHHHHT-SS-EEE-HHHHHHHHTTT-GGG--HHHHHHHHHHHHHHT--EEEE-TT--
T ss_pred HHHhCCCEEEEcCCCCCHHHH-HHHHHHhCCCccccchHHHHHHHhCCChhhCCHHHHHHHHHHHHHcCCCEEEEccchh
Confidence 344899999999987764100 01112222333444444221 11222223455667788887776 56889996
Q ss_pred --------------CCCcchHHHHHHHHHHh
Q psy7475 120 --------------AGRTRSATLVGCYLMKV 136 (295)
Q Consensus 120 --------------~G~~Rs~~~~~~~l~~~ 136 (295)
.=+||.|++++.|++..
T Consensus 164 ~~~~~~~~~~~R~~giVSRGGs~l~~WM~~n 194 (420)
T PF01964_consen 164 RETLERLKKSGRIMGIVSRGGSILAAWMLHN 194 (420)
T ss_dssp GGGGGGGT--TSSS----HHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccccCccccchHHHHHHHHhc
Confidence 23689999999999987
No 206
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=37.09 E-value=1.2e+02 Score=27.14 Aligned_cols=40 Identities=10% Similarity=0.158 Sum_probs=23.8
Q ss_pred HHHcCCcEEEEcccccccccccchhhhhhcCceEEEeecCCCCCCc
Q psy7475 47 LLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTP 92 (295)
Q Consensus 47 L~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 92 (295)
-++.||..+-+.-+... .+.....|+..++++-.|..+.|
T Consensus 85 ~~~~Gi~~~stpfd~~s------vd~l~~~~v~~~KIaS~~~~n~p 124 (329)
T TIGR03569 85 CESKGIEFLSTPFDLES------ADFLEDLGVPRFKIPSGEITNAP 124 (329)
T ss_pred HHHhCCcEEEEeCCHHH------HHHHHhcCCCEEEECcccccCHH
Confidence 34467777666655443 34445667777777766665433
No 207
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=36.50 E-value=72 Score=28.63 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=13.3
Q ss_pred HHHHHHHhCCC----eEEEECCCC
Q psy7475 255 DFIQRISKTGG----TVYVHCKAG 274 (295)
Q Consensus 255 ~~i~~~~~~~~----~vlVHC~~G 274 (295)
+.-.+....|. .||.||.+|
T Consensus 134 ~~g~~~I~dg~~~~~~ILThcnsg 157 (331)
T TIGR00512 134 ENGAALIKKGVAAPLRVLTHCNTG 157 (331)
T ss_pred HHHHHHhcCCCCCCceEEeecCCc
Confidence 33333445667 799999887
No 208
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=36.16 E-value=2.6e+02 Score=25.95 Aligned_cols=38 Identities=18% Similarity=0.441 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHcC-CeEEEEcC----------------CCCcchHHHHHHHHHHh
Q psy7475 99 RGVDFIQRISKTG-GTVYVHCK----------------AGRTRSATLVGCYLMKV 136 (295)
Q Consensus 99 ~~~~~i~~~~~~~-~~vlVHC~----------------~G~~Rs~~~~~~~l~~~ 136 (295)
.+.+.|+++.++| -=+-|||. .=+||.|++.++|++..
T Consensus 144 ~~~~~ie~qa~~GVDfmTiHcGi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~n 198 (431)
T PRK13352 144 DLFDVIEKQAKDGVDFMTIHCGVTRETLERLKKSGRIMGIVSRGGSFLAAWMLHN 198 (431)
T ss_pred HHHHHHHHHHHhCCCEEEEccchhHHHHHHHHhcCCccCeecCCHHHHHHHHHHc
Confidence 3445666666666 45889995 23689999999998876
No 209
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=36.08 E-value=96 Score=25.27 Aligned_cols=35 Identities=23% Similarity=0.236 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcchHHHHH
Q psy7475 93 DQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVG 130 (295)
Q Consensus 93 ~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~ 130 (295)
..+.+.++++.|.+++.+|++|++. |.|.|+.++.
T Consensus 26 ~~~~i~~a~~~i~~al~~~~rI~i~---G~G~S~~~A~ 60 (192)
T PRK00414 26 NIHAIQRAAVLIADSFKAGGKVLSC---GNGGSHCDAM 60 (192)
T ss_pred hHHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHHH
Confidence 3468999999999999999999886 5666655543
No 210
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=35.80 E-value=76 Score=28.86 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=15.4
Q ss_pred HHHHHHHHHhCCCeEEEECCCCC
Q psy7475 253 GVDFIQRISKTGGTVYVHCKAGR 275 (295)
Q Consensus 253 ~~~~i~~~~~~~~~vlVHC~~G~ 275 (295)
+-+.-.+.+..|..||.||.+|.
T Consensus 156 I~~~g~~~I~dg~~ILThcnsg~ 178 (363)
T PRK05772 156 MGLYGLEKLNDGDTVLTQCNAGG 178 (363)
T ss_pred HHHHHHhhcCCCCEEEEecCCcc
Confidence 33444445557789999998873
No 211
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=35.72 E-value=73 Score=27.61 Aligned_cols=35 Identities=26% Similarity=0.462 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHH----HHhCCC---eEEEECCCCCChHHHHH
Q psy7475 248 DKLERGVDFIQR----ISKTGG---TVYVHCKAGRTRSATLV 282 (295)
Q Consensus 248 ~~~~~~~~~i~~----~~~~~~---~vlVHC~~G~~Rsg~~~ 282 (295)
+.+..+.++++- ..++|+ .|.+=|++|..||.+++
T Consensus 220 ef~~~l~~~l~~~LP~y~~egks~lTIaIGCTGGqHRSV~ia 261 (286)
T COG1660 220 EFYEKLRDLLEFWLPRYEKEGKSYLTIAIGCTGGQHRSVYIA 261 (286)
T ss_pred HHHHHHHHHHHHHhHHHHhcCCeEEEEEEccCCCccchHHHH
Confidence 344444444444 233443 46689999999997765
No 212
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=34.92 E-value=1.7e+02 Score=25.05 Aligned_cols=25 Identities=8% Similarity=0.021 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhCCCeEEEECCCC
Q psy7475 250 LERGVDFIQRISKTGGTVYVHCKAG 274 (295)
Q Consensus 250 ~~~~~~~i~~~~~~~~~vlVHC~~G 274 (295)
+.++.+.++.+...|-++.+||..+
T Consensus 213 it~~~~i~~~a~~~gi~~~~~~~~e 237 (263)
T cd03320 213 PRALLELAEEARARGIPAVVSSALE 237 (263)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcchh
Confidence 4666677777788889999999753
No 213
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=34.59 E-value=87 Score=28.81 Aligned_cols=152 Identities=9% Similarity=0.050 Sum_probs=62.2
Q ss_pred HHHHhhccCCChHHHHHHHHhcCCcccCCCcccchhHHHHhhhcCCCcccccCeEEEcCCcChhcH----H---HHHHcC
Q psy7475 132 YLMKVTSRRWYDRIDENIILGALPFKRLTNKEDRNNVFMEKVTSRRWYDRIDENIILGALPFKRLT----N---KLLEEN 204 (295)
Q Consensus 132 ~l~~~~~~~~~~~~a~~~~~~~rp~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~l~~g~~p~~~~~----~---~l~~~g 204 (295)
+.-.. ++.+++..-+.+.+-+-.+.-|....... -...-...-.+| +.=+|..+...+. + ...++|
T Consensus 17 ~vA~~--E~i~pE~ir~~vA~G~iVIp~N~~h~~~~---p~~IG~gl~tKV--NaNIGtS~~~~d~~~E~~K~~~A~~~G 89 (420)
T PF01964_consen 17 YVAER--EGISPEFIRRGVAAGRIVIPANINHKELK---PVGIGKGLRTKV--NANIGTSSDYSDIEEELEKLKIAEKAG 89 (420)
T ss_dssp HHHHH--HCTTHHHHHHHHHTTSEE----TT-TT--------EETTS--EE--EEEE--------HHHHHHHHHHHHHTT
T ss_pred HHHHH--cCCCHHHHHHHHhCceEEEecCCCCCCCC---ceEecCCCceEE--EeeecCCCCCCCHHHHHHHHHHHHHhC
Confidence 33445 67777777777766554443332110000 000001111222 3334444443332 2 233489
Q ss_pred CCEEEEcCcccccccccchh-hhhhcCceEeeccCCCC----CCCCcHHHHHHHHHHHHHHHhCC-CeEEEECCC-----
Q psy7475 205 VKGVVSMNEDYELYFANGRE-EWNKVGVEFLQLSTRDI----FDTPDQDKLERGVDFIQRISKTG-GTVYVHCKA----- 273 (295)
Q Consensus 205 i~~Vv~l~~~~e~~~~~~~~-~~~~~~i~~~~~p~~d~----~~~~~~~~~~~~~~~i~~~~~~~-~~vlVHC~~----- 273 (295)
-.+|.+|....+. +.... ......+..-.+|+-+. ......-.-+.+++.|++..++| .=+-|||.-
T Consensus 90 ADtvMDLStggdl--~~iR~~il~~~~vpvGTVPiYqa~~~~~~~~~~~t~d~~~~~ie~qa~~GVDfmtiH~git~~~~ 167 (420)
T PF01964_consen 90 ADTVMDLSTGGDL--DEIRRAILENSPVPVGTVPIYQAAIRKGGSIVDMTEDDFFDVIEKQAKDGVDFMTIHCGITRETL 167 (420)
T ss_dssp -SEEEE---STTH--HHHHHHHHHT-SS-EEE-HHHHHHHHTTT-GGG--HHHHHHHHHHHHHHT--EEEE-TT--GGGG
T ss_pred CCEEEEcCCCCCH--HHHHHHHHHhCCCccccchHHHHHHHhCCChhhCCHHHHHHHHHHHHHcCCCEEEEccchhHHHH
Confidence 9999999876543 11111 11112333444443211 01122223345667777766665 567899962
Q ss_pred -----------CCChHHHHHHHHHHhcCCC
Q psy7475 274 -----------GRTRSATLVGCYLMKLEPV 292 (295)
Q Consensus 274 -----------G~~Rsg~~~~ayLm~~~~~ 292 (295)
=+||-|.+.++|++++.+-
T Consensus 168 ~~~~~~~R~~giVSRGGs~l~~WM~~n~~E 197 (420)
T PF01964_consen 168 ERLKKSGRIMGIVSRGGSILAAWMLHNGKE 197 (420)
T ss_dssp GGGT--TSSS----HHHHHHHHHHHHHTS-
T ss_pred HHHhhhccccCccccchHHHHHHHHhcCCc
Confidence 2699999999999998764
No 214
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=33.97 E-value=72 Score=25.14 Aligned_cols=26 Identities=8% Similarity=-0.033 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHcCCeEEEEcCCC
Q psy7475 96 KLERGVDFIQRISKTGGTVYVHCKAG 121 (295)
Q Consensus 96 ~~~~~~~~i~~~~~~~~~vlVHC~~G 121 (295)
...-++++++++..+|.+|+|+|...
T Consensus 14 ~~~~acrL~~Ka~~~G~rv~I~~~d~ 39 (154)
T PRK06646 14 LLKSILLLIEKCYYSDLKSVILTADA 39 (154)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 45567899999999999999999554
No 215
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=32.53 E-value=2.7e+02 Score=24.51 Aligned_cols=25 Identities=12% Similarity=0.030 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhCCCeEEEECCCC
Q psy7475 250 LERGVDFIQRISKTGGTVYVHCKAG 274 (295)
Q Consensus 250 ~~~~~~~i~~~~~~~~~vlVHC~~G 274 (295)
+.++.+.++.+...|-++.+||..+
T Consensus 243 i~~~~~i~~~a~~~gi~~~~~~~~e 267 (307)
T TIGR01927 243 PAKLRDLAQKAHRLGLQAVFSSVFE 267 (307)
T ss_pred HHHHHHHHHHHHHcCCCEEEECccc
Confidence 4566777778888899999999654
No 216
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=32.49 E-value=22 Score=25.02 Aligned_cols=19 Identities=21% Similarity=0.559 Sum_probs=16.3
Q ss_pred CCCcccccCceEEcCCcCh
Q psy7475 23 RRWYDRIDENIILGALPFK 41 (295)
Q Consensus 23 ~~~~~~i~~~ly~G~~~~~ 41 (295)
.+|+.+|.+++|+|+..+.
T Consensus 18 trwl~Ei~~GVyVg~~s~r 36 (86)
T PF09707_consen 18 TRWLLEIRPGVYVGNVSAR 36 (86)
T ss_pred hheeEecCCCcEEcCCCHH
Confidence 7789999999999987553
No 217
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=31.77 E-value=92 Score=27.33 Aligned_cols=35 Identities=23% Similarity=0.466 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHH----HHcCC---eEEEEcCCCCcchHHHHH
Q psy7475 96 KLERGVDFIQRI----SKTGG---TVYVHCKAGRTRSATLVG 130 (295)
Q Consensus 96 ~~~~~~~~i~~~----~~~~~---~vlVHC~~G~~Rs~~~~~ 130 (295)
+++.+.++++.. .++|+ .|-|=|.+|..||.+++-
T Consensus 223 ~~~~~~~~~~~~~~~~~~~g~~~~~i~igCtGG~HRSV~~~e 264 (288)
T PRK05416 223 FLDKIRDLLEFWLPGYEREGKSYLTIAIGCTGGQHRSVAIAE 264 (288)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEEecCCCcccHHHHHH
Confidence 444444444443 23443 377889999999988864
No 218
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=31.33 E-value=73 Score=22.99 Aligned_cols=29 Identities=10% Similarity=0.017 Sum_probs=18.1
Q ss_pred hCCCeEEEECCCCCC-hHHHHHHHHHHhcCCC
Q psy7475 262 KTGGTVYVHCKAGRT-RSATLVGCYLMKLEPV 292 (295)
Q Consensus 262 ~~~~~vlVHC~~G~~-Rsg~~~~ayLm~~~~~ 292 (295)
..+.+|+|+|..|.. || ..++ ..++..|.
T Consensus 62 ~~~~~vvvyc~~g~~~~s-~~~a-~~l~~~G~ 91 (110)
T cd01521 62 DKEKLFVVYCDGPGCNGA-TKAA-LKLAELGF 91 (110)
T ss_pred CCCCeEEEEECCCCCchH-HHHH-HHHHHcCC
Confidence 456899999998853 44 3333 44445454
No 219
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=31.21 E-value=60 Score=25.25 Aligned_cols=22 Identities=14% Similarity=0.422 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhCCCeEEEECCC
Q psy7475 252 RGVDFIQRISKTGGTVYVHCKA 273 (295)
Q Consensus 252 ~~~~~i~~~~~~~~~vlVHC~~ 273 (295)
-++.+++.+..+|.+|+|+|..
T Consensus 17 ~~c~L~~k~~~~G~rvlI~~~d 38 (144)
T COG2927 17 AACRLAEKAWRSGWRVLIQCED 38 (144)
T ss_pred HHHHHHHHHHHcCCeEEEEeCC
Confidence 6788999999999999999964
No 220
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=30.73 E-value=1.3e+02 Score=22.78 Aligned_cols=32 Identities=19% Similarity=0.323 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEECCCCCChHH
Q psy7475 248 DKLERGVDFIQRISKTGGTVYVHCKAGRTRSA 279 (295)
Q Consensus 248 ~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg 279 (295)
..+.++.+.++.....+.||++....|.|++-
T Consensus 5 ~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~ 36 (138)
T PF14532_consen 5 PAMRRLRRQLERLAKSSSPVLITGEPGTGKSL 36 (138)
T ss_dssp HHHHHHHHHHHHHHCSSS-EEEECCTTSSHHH
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHH
Confidence 45677778888888888999999999999993
No 221
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=30.63 E-value=58 Score=20.56 Aligned_cols=23 Identities=9% Similarity=-0.075 Sum_probs=17.2
Q ss_pred HHHHHHHHhhccCCChHHHHHHHHh
Q psy7475 128 LVGCYLMKVTSRRWYDRIDENIILG 152 (295)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~a~~~~~~ 152 (295)
-+...||.. +|++.++|+..++.
T Consensus 17 ~AkgiLm~~--~g~~e~~A~~~Lr~ 39 (56)
T PF03861_consen 17 QAKGILMAR--YGLSEDEAYRLLRR 39 (56)
T ss_dssp HHHHHHHHH--HT--HHHHHHHHHH
T ss_pred HHHHHHHHH--hCcCHHHHHHHHHH
Confidence 345678888 89999999999986
No 222
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=30.46 E-value=97 Score=26.62 Aligned_cols=81 Identities=17% Similarity=0.258 Sum_probs=48.9
Q ss_pred EEEcCCcChhcHHHHHHcCCCEEEEcCccccc-ccccchhhhhhcCceEeeccCCCCCC-CC---cHHHHHHHHHHHHHH
Q psy7475 186 IILGALPFKRLTNKLLEENVKGVVSMNEDYEL-YFANGREEWNKVGVEFLQLSTRDIFD-TP---DQDKLERGVDFIQRI 260 (295)
Q Consensus 186 l~~g~~p~~~~~~~l~~~gi~~Vv~l~~~~e~-~~~~~~~~~~~~~i~~~~~p~~d~~~-~~---~~~~~~~~~~~i~~~ 260 (295)
..-|......-.+++++++++-|||.+.+.-- -..+..+..++.|+.|..+.=+.+.. .+ ..+.+.++.+.+.+
T Consensus 48 ~~~G~l~~e~l~~~l~e~~i~llIDATHPyAa~iS~Na~~aake~gipy~r~eRP~~~~~gd~~~~V~d~~ea~~~~~~- 126 (257)
T COG2099 48 RVGGFLGAEGLAAFLREEGIDLLIDATHPYAARISQNAARAAKETGIPYLRLERPPWAPNGDNWIEVADIEEAAEAAKQ- 126 (257)
T ss_pred eecCcCCHHHHHHHHHHcCCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEEECCccccCCCceEEecCHHHHHHHHhc-
Confidence 33344445566788999999999999887633 22344556777899999886544421 11 22455555444443
Q ss_pred HhCCCeEEE
Q psy7475 261 SKTGGTVYV 269 (295)
Q Consensus 261 ~~~~~~vlV 269 (295)
.+++|+.
T Consensus 127 --~~~rVfl 133 (257)
T COG2099 127 --LGRRVFL 133 (257)
T ss_pred --cCCcEEE
Confidence 3444554
No 223
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=30.27 E-value=1.2e+02 Score=27.65 Aligned_cols=15 Identities=40% Similarity=0.729 Sum_probs=11.6
Q ss_pred HHcCCeEEEEcCCCC
Q psy7475 108 SKTGGTVYVHCKAGR 122 (295)
Q Consensus 108 ~~~~~~vlVHC~~G~ 122 (295)
+.+|..||.||.+|.
T Consensus 164 I~dg~~ILThcnsg~ 178 (363)
T PRK05772 164 LNDGDTVLTQCNAGG 178 (363)
T ss_pred cCCCCEEEEecCCcc
Confidence 345778999998874
No 224
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=30.11 E-value=2.7e+02 Score=24.68 Aligned_cols=39 Identities=13% Similarity=0.006 Sum_probs=20.4
Q ss_pred hHHHHHHcCCcEEEEccccccc-ccccchhhhhhcCceEE
Q psy7475 43 LTNKLLEENVKGVVSMNEDYEL-YFANGREEWNKVGVEFL 81 (295)
Q Consensus 43 ~~~~L~~~gi~~Vv~l~~~~~~-~~~~~~~~~~~~~~~~~ 81 (295)
.+..+++.|.++||+++....- +.....+..+..|++.+
T Consensus 43 El~~~k~~Gg~tiVd~T~~g~GRd~~~l~~is~~tGv~II 82 (308)
T PF02126_consen 43 ELKEFKAAGGRTIVDATPIGLGRDVEALREISRRTGVNII 82 (308)
T ss_dssp HHHHHHHTTEEEEEE--SGGGTB-HHHHHHHHHHHT-EEE
T ss_pred HHHHHHHcCCCEEEecCCcccCcCHHHHHHHHHHhCCeEE
Confidence 4566778999999999875421 11112334445565544
No 225
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=30.08 E-value=80 Score=27.21 Aligned_cols=26 Identities=12% Similarity=0.029 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHcCCeEEEEcCCC
Q psy7475 96 KLERGVDFIQRISKTGGTVYVHCKAG 121 (295)
Q Consensus 96 ~~~~~~~~i~~~~~~~~~vlVHC~~G 121 (295)
+..-+..+|+-+.+.+.||.|||+..
T Consensus 110 Q~~~F~~ql~lA~~~~lPviIH~R~A 135 (256)
T COG0084 110 QEEVFEAQLELAKELNLPVIIHTRDA 135 (256)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcccc
Confidence 45556678888888899999998554
No 226
>TIGR03642 cas_csx13 CRISPR-associated protein, Csx13 family. This model describes a protein N-terminal protein sequence domain strictly associated with CRISPR and CRISPR-associated protein systems. This model and TIGR02584 identify two separate clades from a larger homology domain family, both CRISPR-associated, while other homologs are found that may not be. Members are found in bacteria that include Pelotomaculum thermopropionicum SI, Thermoanaerobacter tengcongensis MB4, and Roseiflexus sp. RS-1, and in archaea that include Thermoplasma volcanium, Picrophilus torridus, and Methanospirillum hungatei. The molecular function is unknown.
Probab=30.08 E-value=2e+02 Score=21.75 Aligned_cols=51 Identities=12% Similarity=0.169 Sum_probs=26.8
Q ss_pred eecCCCCCCchHHHHHHHHHHHHHH----HHcCCe-EEEEcCCCCcchHHHHHHHHHHh
Q psy7475 83 LSTRDIFDTPDQDKLERGVDFIQRI----SKTGGT-VYVHCKAGRTRSATLVGCYLMKV 136 (295)
Q Consensus 83 ~~~~D~~~~~~~~~~~~~~~~i~~~----~~~~~~-vlVHC~~G~~Rs~~~~~~~l~~~ 136 (295)
+|+.|.. ..+....+.++|.+. .++++. .+.-|-+|--++-++.++|.+..
T Consensus 59 ~~~~DI~---t~~d~~~~~~~I~~~i~~l~~~~~~~~lh~~iaGGRK~Ms~~~~~a~sl 114 (124)
T TIGR03642 59 LKFDDIL---SDEDILTFMSIAAKEVKKERENYGCERIIVNISGGRKIMTIILALYAQL 114 (124)
T ss_pred cCccccC---CHHHHHHHHHHHHHHHHHHhhCCCcceEEEEecCCHHHHHHHHHHHHHH
Confidence 4555543 333333444444444 444442 33335566556777777777766
No 227
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=30.06 E-value=1.3e+02 Score=22.89 Aligned_cols=34 Identities=26% Similarity=0.601 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEECCCCCChHHHHHH
Q psy7475 247 QDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVG 283 (295)
Q Consensus 247 ~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg~~~~ 283 (295)
.+.+.++.+.+.+..++||+|++. |.|-|+.++.
T Consensus 18 ~~~i~~aa~~i~~~~~~gg~i~~~---G~G~S~~~a~ 51 (138)
T PF13580_consen 18 AEAIEKAADLIAEALRNGGRIFVC---GNGHSAAIAS 51 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT--EEEE---ESTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEE---cCchhhhHHH
Confidence 467888889999999998887776 4456765544
No 228
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=29.67 E-value=75 Score=30.86 Aligned_cols=45 Identities=13% Similarity=0.276 Sum_probs=33.2
Q ss_pred hhhhhcCceEeeccCCCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEECCCCCC
Q psy7475 224 EEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRT 276 (295)
Q Consensus 224 ~~~~~~~i~~~~~p~~d~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~ 276 (295)
..+++.|++|. =|++.. .+++.+..++.++...+||+||...=+|
T Consensus 237 ~lFeelGf~Yi-GPiDGH-------ni~~Li~~Lk~~kd~~gPvllHv~T~KG 281 (627)
T COG1154 237 TLFEELGFNYI-GPIDGH-------NLEELIPTLKNAKDLKGPVLLHVVTKKG 281 (627)
T ss_pred hhHHHhCCeeE-CCcCCC-------CHHHHHHHHHHHhcCCCCEEEEEEecCC
Confidence 45788899988 566655 4566677777887788999999874444
No 229
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=29.65 E-value=2.2e+02 Score=20.51 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=18.4
Q ss_pred CCCeEEEECCCCCChHHHHHHHHHHhcCCC
Q psy7475 263 TGGTVYVHCKAGRTRSATLVGCYLMKLEPV 292 (295)
Q Consensus 263 ~~~~vlVHC~~G~~Rsg~~~~ayLm~~~~~ 292 (295)
++.+|+++|..| .||.. +++.+...|.
T Consensus 77 ~~~~iv~yc~~g-~~s~~--~~~~l~~~G~ 103 (118)
T cd01449 77 PDKPVIVYCGSG-VTACV--LLLALELLGY 103 (118)
T ss_pred CCCCEEEECCcH-HHHHH--HHHHHHHcCC
Confidence 567999999988 47754 3455555554
No 230
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=29.49 E-value=1.7e+02 Score=23.25 Aligned_cols=34 Identities=18% Similarity=0.318 Sum_probs=25.5
Q ss_pred cHHHHHHHHHHHHHHHhCCCeEEEECCCCCChHHHHH
Q psy7475 246 DQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLV 282 (295)
Q Consensus 246 ~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg~~~ 282 (295)
..+.++++.+.|.+...++++|.+. |.|.|+.++
T Consensus 15 ~~~~i~~a~~~i~~~i~~~~~I~i~---G~G~S~~~A 48 (177)
T cd05006 15 LAEAIEQAAQLLAEALLNGGKILIC---GNGGSAADA 48 (177)
T ss_pred hHHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHH
Confidence 3467888899998888777888777 666675544
No 231
>PRK09875 putative hydrolase; Provisional
Probab=29.42 E-value=3.9e+02 Score=23.46 Aligned_cols=21 Identities=29% Similarity=0.577 Sum_probs=16.0
Q ss_pred hhHHHHHHcCCcEEEEccccc
Q psy7475 42 RLTNKLLEENVKGVVSMNEDY 62 (295)
Q Consensus 42 ~~~~~L~~~gi~~Vv~l~~~~ 62 (295)
.++..+++.|.++||+++...
T Consensus 38 ~el~~~~~~Gg~tiVd~T~~g 58 (292)
T PRK09875 38 QEMNDLMTRGVRNVIEMTNRY 58 (292)
T ss_pred HHHHHHHHhCCCeEEecCCCc
Confidence 345667889999999987644
No 232
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=29.12 E-value=1.5e+02 Score=27.30 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=18.6
Q ss_pred hCCCeEEEECCCCCChHHHHHHHHHHhcCCC
Q psy7475 262 KTGGTVYVHCKAGRTRSATLVGCYLMKLEPV 292 (295)
Q Consensus 262 ~~~~~vlVHC~~G~~Rsg~~~~ayLm~~~~~ 292 (295)
..+.+|+++|..| .|| ..++. .+...|.
T Consensus 341 ~~d~~iVvyC~~G-~rS-~~aa~-~L~~~G~ 368 (392)
T PRK07878 341 PQDRTIVLYCKTG-VRS-AEALA-ALKKAGF 368 (392)
T ss_pred CCCCcEEEEcCCC-hHH-HHHHH-HHHHcCC
Confidence 4568999999998 577 44444 4445554
No 233
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=28.78 E-value=75 Score=24.23 Aligned_cols=31 Identities=13% Similarity=0.129 Sum_probs=24.2
Q ss_pred ceEEcCCcChhhHHHHHHcCCcEEEEccccc
Q psy7475 32 NIILGALPFKRLTNKLLEENVKGVVSMNEDY 62 (295)
Q Consensus 32 ~ly~G~~~~~~~~~~L~~~gi~~Vv~l~~~~ 62 (295)
.+++|+.....+.+.|+++|+..++......
T Consensus 86 ~vivGG~~~~~~~~~l~~~Gvd~~~~~gt~~ 116 (132)
T TIGR00640 86 LVVVGGVIPPQDFDELKEMGVAEIFGPGTPI 116 (132)
T ss_pred EEEEeCCCChHhHHHHHHCCCCEEECCCCCH
Confidence 4788887667778888888988888876654
No 234
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=28.76 E-value=1.9e+02 Score=25.10 Aligned_cols=74 Identities=15% Similarity=0.188 Sum_probs=37.5
Q ss_pred HHHHHcCCcEEEEcccccccccccc-------hhhhhhcCceEEEeecCCCCCCchHHHHHHHHHHHHHH----H-HcCC
Q psy7475 45 NKLLEENVKGVVSMNEDYELYFANG-------REEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRI----S-KTGG 112 (295)
Q Consensus 45 ~~L~~~gi~~Vv~l~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~----~-~~~~ 112 (295)
...+++|.++.|..+-.....+... .+.++..|++|+..-.+|-.+..- ...+-+||.+. + +-|+
T Consensus 124 ~~Ak~mGAktFVh~sfprhms~~~l~~Rr~~M~~~C~~lGi~fv~~taPDP~sd~g---v~gaqqfIlE~vp~~i~kYGk 200 (275)
T PF12683_consen 124 WAAKKMGAKTFVHYSFPRHMSYELLARRRDIMEEACKDLGIKFVEVTAPDPTSDVG---VAGAQQFILEDVPKWIKKYGK 200 (275)
T ss_dssp HHHHHTT-S-EEEEEETTGGGSHHHHHHHHHHHHHHHHCT--EEEEEE---SSTCH---HHHHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHcCCceEEEEechhhcchHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCC---cHHHHHHHHHHHHHHHHHhCC
Confidence 4467799999999976655422111 456778899999997777432221 22233344332 2 2388
Q ss_pred eEEEEcCCC
Q psy7475 113 TVYVHCKAG 121 (295)
Q Consensus 113 ~vlVHC~~G 121 (295)
.+.+.|...
T Consensus 201 dtaff~TN~ 209 (275)
T PF12683_consen 201 DTAFFCTND 209 (275)
T ss_dssp --EEEESSH
T ss_pred ceeEEecCc
Confidence 999999755
No 235
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=28.34 E-value=1.2e+02 Score=26.42 Aligned_cols=19 Identities=26% Similarity=0.524 Sum_probs=15.7
Q ss_pred eEEEEcCCCCcchHHHHHH
Q psy7475 113 TVYVHCKAGRTRSATLVGC 131 (295)
Q Consensus 113 ~vlVHC~~G~~Rs~~~~~~ 131 (295)
.|.|=|.+|..||.+++=.
T Consensus 245 TIaIGCTGGqHRSV~iae~ 263 (286)
T COG1660 245 TIAIGCTGGQHRSVYIAEQ 263 (286)
T ss_pred EEEEccCCCccchHHHHHH
Confidence 4778899999999888743
No 236
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=28.09 E-value=99 Score=29.33 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=19.1
Q ss_pred hCCCeEEEECCCCCChHHHHHHHHHHhcCCC
Q psy7475 262 KTGGTVYVHCKAGRTRSATLVGCYLMKLEPV 292 (295)
Q Consensus 262 ~~~~~vlVHC~~G~~Rsg~~~~ayLm~~~~~ 292 (295)
..+.+++++|..|. || ..++.+|- ..|.
T Consensus 447 ~~~~~iivyC~~G~-rS-~~aa~~L~-~~G~ 474 (482)
T PRK01269 447 DQSKTYLLYCDRGV-MS-RLQALYLR-EQGF 474 (482)
T ss_pred CCCCeEEEECCCCH-HH-HHHHHHHH-HcCC
Confidence 35679999999994 87 55555554 3443
No 237
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=27.96 E-value=1.2e+02 Score=25.96 Aligned_cols=27 Identities=7% Similarity=-0.053 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEEcCCC
Q psy7475 95 DKLERGVDFIQRISKTGGTVYVHCKAG 121 (295)
Q Consensus 95 ~~~~~~~~~i~~~~~~~~~vlVHC~~G 121 (295)
.+..-+.++++-+.+.+.||.|||...
T Consensus 111 ~Q~~vf~~ql~lA~~~~~Pv~iH~r~a 137 (258)
T PRK11449 111 RQQWLLDEQLKLAKRYDLPVILHSRRT 137 (258)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEecCc
Confidence 344555567777777799999999753
No 238
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=27.79 E-value=76 Score=31.19 Aligned_cols=45 Identities=13% Similarity=0.366 Sum_probs=28.6
Q ss_pred hhhhcCceEeeccCCCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEECCCCCCh
Q psy7475 225 EWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTR 277 (295)
Q Consensus 225 ~~~~~~i~~~~~p~~d~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~R 277 (295)
.|++.|+.|.. |++.. .++++.+.++.+.+.++|++|||..=+|+
T Consensus 233 ~f~~~G~~~~~-~vDGh-------d~~~l~~al~~ak~~~~P~~i~~~T~KGk 277 (617)
T TIGR00204 233 FFEELGFNYIG-PVDGH-------DLLELIETLKNAKKLKGPVFLHIQTKKGK 277 (617)
T ss_pred hHHHcCCcEEc-ccCCC-------CHHHHHHHHHHHhcCCCCEEEEEEecCCC
Confidence 47777888876 66543 23444455555555567999998754444
No 239
>COG3564 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.69 E-value=88 Score=22.39 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhCCCeEEEECCCC
Q psy7475 250 LERGVDFIQRISKTGGTVYVHCKAG 274 (295)
Q Consensus 250 ~~~~~~~i~~~~~~~~~vlVHC~~G 274 (295)
...+++.|.+....-+||+.|=+.|
T Consensus 10 T~aAl~Li~~l~~~hgpvmFHQSGG 34 (116)
T COG3564 10 TPAALDLIAELQAEHGPVMFHQSGG 34 (116)
T ss_pred CHHHHHHHHHHHHhcCCEEEeccCC
Confidence 3567888999888889999995544
No 240
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=27.66 E-value=2.1e+02 Score=24.15 Aligned_cols=77 Identities=9% Similarity=0.124 Sum_probs=45.1
Q ss_pred HHHHHHcCCCEEEEcCcccc--c---ccccchhhhhhcCceEeeccCCCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEC
Q psy7475 197 TNKLLEENVKGVVSMNEDYE--L---YFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHC 271 (295)
Q Consensus 197 ~~~l~~~gi~~Vv~l~~~~e--~---~~~~~~~~~~~~~i~~~~~p~~d~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC 271 (295)
.+.+++.|++..+++..... . .+........+.|..... +.|......++.+.+.++.+.+.... -++-+||
T Consensus 121 i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~--l~Dt~G~~~P~~v~~li~~l~~~~~~-~~~~~H~ 197 (265)
T cd03174 121 IEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEIS--LKDTVGLATPEEVAELVKALREALPD-VPLGLHT 197 (265)
T ss_pred HHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEE--echhcCCcCHHHHHHHHHHHHHhCCC-CeEEEEe
Confidence 45677788888888743332 1 111222334445655444 44544456677888777777775543 6788888
Q ss_pred CCCCC
Q psy7475 272 KAGRT 276 (295)
Q Consensus 272 ~~G~~ 276 (295)
+.-.|
T Consensus 198 Hn~~g 202 (265)
T cd03174 198 HNTLG 202 (265)
T ss_pred CCCCC
Confidence 75443
No 241
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=27.59 E-value=1.6e+02 Score=27.16 Aligned_cols=30 Identities=17% Similarity=0.091 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhCCCeEEEECCC--CCChHH
Q psy7475 250 LERGVDFIQRISKTGGTVYVHCKA--GRTRSA 279 (295)
Q Consensus 250 ~~~~~~~i~~~~~~~~~vlVHC~~--G~~Rsg 279 (295)
+.++.+.+.-+...|-++.+||.. |++.++
T Consensus 298 it~~~kia~~A~~~gi~~~~h~~~e~~i~~aa 329 (395)
T cd03323 298 MRGSVRVAQVCETWGLGWGMHSNNHLGISLAM 329 (395)
T ss_pred HHHHHHHHHHHHHcCCeEEEecCcccHHHHHH
Confidence 466677777788888999999975 555543
No 242
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=27.49 E-value=1.3e+02 Score=22.94 Aligned_cols=33 Identities=27% Similarity=0.615 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEEcCCCCcchHHHH
Q psy7475 94 QDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLV 129 (295)
Q Consensus 94 ~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~ 129 (295)
.+.+.++.+.+.+.+.+|++|++. |.|-|+.++
T Consensus 18 ~~~i~~aa~~i~~~~~~gg~i~~~---G~G~S~~~a 50 (138)
T PF13580_consen 18 AEAIEKAADLIAEALRNGGRIFVC---GNGHSAAIA 50 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT--EEEE---ESTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEE---cCchhhhHH
Confidence 457889999999999998888875 334454443
No 243
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=27.24 E-value=74 Score=23.67 Aligned_cols=32 Identities=16% Similarity=0.065 Sum_probs=24.2
Q ss_pred ceEEcCCcChhhHHHHHHcCCcEEEEcccccc
Q psy7475 32 NIILGALPFKRLTNKLLEENVKGVVSMNEDYE 63 (295)
Q Consensus 32 ~ly~G~~~~~~~~~~L~~~gi~~Vv~l~~~~~ 63 (295)
.+++|+.....+.+.+++.|++.++......+
T Consensus 83 ~i~~GG~~~~~~~~~~~~~G~d~~~~~~~~~~ 114 (122)
T cd02071 83 LVVGGGIIPPEDYELLKEMGVAEIFGPGTSIE 114 (122)
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEECCCCCHH
Confidence 47888766666778888889988888776543
No 244
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=26.10 E-value=4.1e+02 Score=23.96 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=22.0
Q ss_pred cccccCceEEcC--CcChhhHHH----HHHcCCcEEEEccccc
Q psy7475 26 YDRIDENIILGA--LPFKRLTNK----LLEENVKGVVSMNEDY 62 (295)
Q Consensus 26 ~~~i~~~ly~G~--~~~~~~~~~----L~~~gi~~Vv~l~~~~ 62 (295)
|.-|+.++.++. .....+... -..-|+++|++.....
T Consensus 14 PG~iD~HvH~~~~~~~~~e~~~s~s~aA~~GGvTtii~~p~~~ 56 (374)
T cd01317 14 PGLVDLHVHLREPGFEYKETLESGAKAAAAGGFTTVVCMPNTN 56 (374)
T ss_pred cCEEeeccccCCCCccccchHHHHHHHHHhCCCcEEEECCCCC
Confidence 556677776654 222334333 3336899999987543
No 245
>PLN02591 tryptophan synthase
Probab=26.10 E-value=3.6e+02 Score=23.08 Aligned_cols=130 Identities=10% Similarity=0.067 Sum_probs=72.7
Q ss_pred cCCChHHHHHHHHhcCCccc-CCCcccchhHHHHhhhcCCCcccc----cCeEEEcCCcChhc---HHHHHHcCCCEEEE
Q psy7475 139 RRWYDRIDENIILGALPFKR-LTNKEDRNNVFMEKVTSRRWYDRI----DENIILGALPFKRL---TNKLLEENVKGVVS 210 (295)
Q Consensus 139 ~~~~~~~a~~~~~~~rp~~~-~~~~~~~~~~l~~~~~~~~~~~~i----~~~l~~g~~p~~~~---~~~l~~~gi~~Vv~ 210 (295)
.|.+.++.+..+++.|.... |-....+||...++- ..+|+.+. .+++++-+.|.... .+.++++|+..|.-
T Consensus 59 ~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~G-~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~l 137 (250)
T PLN02591 59 KGTTLDSVISMLKEVAPQLSCPIVLFTYYNPILKRG-IDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLL 137 (250)
T ss_pred cCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHhH-HHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEE
Confidence 69999999999999875322 112233566554432 22333332 35788888886443 35567799999998
Q ss_pred cCccccc-ccccchhhhhhcCceEe-e-ccCCCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEECCCCCC
Q psy7475 211 MNEDYEL-YFANGREEWNKVGVEFL-Q-LSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRT 276 (295)
Q Consensus 211 l~~~~e~-~~~~~~~~~~~~~i~~~-~-~p~~d~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~ 276 (295)
+....+. .... -.-.+.|+-|. . ..+... .....+.+.+.++.+++. .+-||+| ..|++
T Consensus 138 v~Ptt~~~ri~~--ia~~~~gFIY~Vs~~GvTG~-~~~~~~~~~~~i~~vk~~--~~~Pv~v--GFGI~ 199 (250)
T PLN02591 138 TTPTTPTERMKA--IAEASEGFVYLVSSTGVTGA-RASVSGRVESLLQELKEV--TDKPVAV--GFGIS 199 (250)
T ss_pred eCCCCCHHHHHH--HHHhCCCcEEEeeCCCCcCC-CcCCchhHHHHHHHHHhc--CCCceEE--eCCCC
Confidence 7655421 1100 11123466665 1 233332 233345566555555553 3456664 88886
No 246
>COG5456 Predicted integral membrane protein linked to a cation pump [Inorganic ion transport and metabolism]
Probab=25.93 E-value=93 Score=24.31 Aligned_cols=56 Identities=21% Similarity=0.341 Sum_probs=41.4
Q ss_pred cchhhH-HHHHHHHHhhcCCCcccccCceEEcCCcChhhHHH---HHHcCCcEEEEcccc
Q psy7475 6 TFYPSL-FYNVFMEKVTSRRWYDRIDENIILGALPFKRLTNK---LLEENVKGVVSMNED 61 (295)
Q Consensus 6 ~~~p~~-~~~~~~~~~~~~~~~~~i~~~ly~G~~~~~~~~~~---L~~~gi~~Vv~l~~~ 61 (295)
+|+... .-|.++.|+.++.|-..|-+|-|+.|+....-.++ -...|++..+.+...
T Consensus 24 ~FFg~iIaVnlvma~~A~~SwSGlVv~NtYvAsqqFN~ka~~gra~AAlGw~gkltv~~~ 83 (166)
T COG5456 24 LFFGVIIAVNLVMAWNASRSWSGLVVENTYVASQQFNRKAEEGRAQAALGWKGKLTVDGG 83 (166)
T ss_pred HHHHHHHHHHHHHHHHhhccccceEecchhHHHHHHHHHHHhhHHHhhcCcceeEEecCC
Confidence 344444 66899999999999999999999999866543333 334799887776543
No 247
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=25.92 E-value=4.2e+02 Score=24.01 Aligned_cols=77 Identities=12% Similarity=0.184 Sum_probs=47.3
Q ss_pred HHHHHHcCCCEEEEcCcccccccccchhhhhhcC-ceEeeccC-CCCCCCCc---------HHHHHHHHHHHHHHHhCCC
Q psy7475 197 TNKLLEENVKGVVSMNEDYELYFANGREEWNKVG-VEFLQLST-RDIFDTPD---------QDKLERGVDFIQRISKTGG 265 (295)
Q Consensus 197 ~~~l~~~gi~~Vv~l~~~~e~~~~~~~~~~~~~~-i~~~~~p~-~d~~~~~~---------~~~~~~~~~~i~~~~~~~~ 265 (295)
.+.|+++||..+|-+..+... .......+++ +....+|- -|++-... .+...++++-+.+..+.-+
T Consensus 87 ~~~l~~~gId~LvvIGGDgS~---~gA~~Lae~~~i~vVGvPkTIDNDi~~td~tiGfdTA~~~~~eaid~l~dtassh~ 163 (347)
T COG0205 87 AENLKKLGIDALVVIGGDGSY---TGAALLAEEGGIPVVGVPKTIDNDISGTDFTIGFDTALETAVEAIDNLRDTASSHE 163 (347)
T ss_pred HHHHHHcCCCEEEEECCCChH---HHHHHHHHhcCCcEEecCCCccCCCcccccCccHHHHHHHHHHHHHHHHHHHhCcC
Confidence 466888999999988776542 2233444455 88888883 44421111 1334444555555555667
Q ss_pred eEEEECCCCCC
Q psy7475 266 TVYVHCKAGRT 276 (295)
Q Consensus 266 ~vlVHC~~G~~ 276 (295)
++.|+=.+|.+
T Consensus 164 r~~iveVMGR~ 174 (347)
T COG0205 164 RIFIVEVMGRH 174 (347)
T ss_pred CEEEEEecCcC
Confidence 88888888854
No 248
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=25.88 E-value=85 Score=21.48 Aligned_cols=19 Identities=16% Similarity=0.317 Sum_probs=13.9
Q ss_pred eEEEECCCCCChHHHHHHHH
Q psy7475 266 TVYVHCKAGRTRSATLVGCY 285 (295)
Q Consensus 266 ~vlVHC~~G~~Rsg~~~~ay 285 (295)
+++|-|.+|.|=| .++..=
T Consensus 1 kilvvC~~G~~tS-~ll~~k 19 (86)
T cd05563 1 KILAVCGSGLGSS-LMLKMN 19 (86)
T ss_pred CEEEECCCCccHH-HHHHHH
Confidence 4899999999944 555543
No 249
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=25.85 E-value=1.2e+02 Score=23.39 Aligned_cols=26 Identities=15% Similarity=0.248 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhCCCeEEEECCCC
Q psy7475 249 KLERGVDFIQRISKTGGTVYVHCKAG 274 (295)
Q Consensus 249 ~~~~~~~~i~~~~~~~~~vlVHC~~G 274 (295)
...-+++.++.+.++|.+|+|+|..-
T Consensus 14 ~~~~~c~L~~ka~~~g~rv~I~~~d~ 39 (142)
T PRK05728 14 LEALLCELAEKALRAGWRVLVQCEDE 39 (142)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 44557788889999999999999754
No 250
>smart00400 ZnF_CHCC zinc finger.
Probab=25.83 E-value=1.1e+02 Score=19.09 Aligned_cols=32 Identities=16% Similarity=0.291 Sum_probs=21.9
Q ss_pred EEEcCCCCcchHHHHHHHHHHhhccCCChHHHHHHH
Q psy7475 115 YVHCKAGRTRSATLVGCYLMKVTSRRWYDRIDENII 150 (295)
Q Consensus 115 lVHC~~G~~Rs~~~~~~~l~~~~~~~~~~~~a~~~~ 150 (295)
..||.+ -|+.|-++ -++|.. ++.+..||+..+
T Consensus 23 ~~~Cf~-cg~gGd~i-~fv~~~--~~~sf~eA~~~L 54 (55)
T smart00400 23 FFHCFG-CGAGGNVI-SFLMKY--DKLSFVEAVKKL 54 (55)
T ss_pred EEEEeC-CCCCCCHH-HHHHHH--HCcCHHHHHHHh
Confidence 477774 34566554 445666 689999998875
No 251
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=25.81 E-value=1e+02 Score=29.93 Aligned_cols=44 Identities=14% Similarity=0.279 Sum_probs=30.9
Q ss_pred hhhhcCceEEEeecCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCCCCc
Q psy7475 72 EWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRT 123 (295)
Q Consensus 72 ~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~ 123 (295)
.++..|++|+- |++.+. +++.+..+.+..+..+||+||...-.|
T Consensus 238 lFeelGf~YiG-PiDGHn-------i~~Li~~Lk~~kd~~gPvllHv~T~KG 281 (627)
T COG1154 238 LFEELGFNYIG-PIDGHN-------LEELIPTLKNAKDLKGPVLLHVVTKKG 281 (627)
T ss_pred hHHHhCCeeEC-CcCCCC-------HHHHHHHHHHHhcCCCCEEEEEEecCC
Confidence 46777888866 676553 455566677777788999999875444
No 252
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=25.71 E-value=72 Score=24.20 Aligned_cols=41 Identities=10% Similarity=0.181 Sum_probs=20.1
Q ss_pred CceEEEeecCCCCCCchHHHHHHHHHHHHHH-HHcCCeEEEEcCCCCcc
Q psy7475 77 GVEFLQLSTRDIFDTPDQDKLERGVDFIQRI-SKTGGTVYVHCKAGRTR 124 (295)
Q Consensus 77 ~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~-~~~~~~vlVHC~~G~~R 124 (295)
..+.+.+-++|+ .+.++++-|... ....++++|||+...+-
T Consensus 68 ~aDlv~iavpDd-------aI~~va~~La~~~~~~~g~iVvHtSGa~~~ 109 (127)
T PF10727_consen 68 DADLVFIAVPDD-------AIAEVAEQLAQYGAWRPGQIVVHTSGALGS 109 (127)
T ss_dssp C-SEEEE-S-CC-------HHHHHHHHHHCC--S-TT-EEEES-SS--G
T ss_pred cCCEEEEEechH-------HHHHHHHHHHHhccCCCCcEEEECCCCChH
Confidence 446667777774 355555555544 11247899999877653
No 253
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=25.47 E-value=80 Score=24.22 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhCCCeEEEECCCC
Q psy7475 250 LERGVDFIQRISKTGGTVYVHCKAG 274 (295)
Q Consensus 250 ~~~~~~~i~~~~~~~~~vlVHC~~G 274 (295)
..-+++.++.+.++|.+|+|+|..-
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~ 39 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDE 39 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSH
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 4566788899999999999999753
No 254
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=25.41 E-value=3.8e+02 Score=22.27 Aligned_cols=79 Identities=8% Similarity=0.007 Sum_probs=47.8
Q ss_pred HHHHHHcCCcEEEEccccccc---ccccchhhhhhcCceEEEeecCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCC
Q psy7475 44 TNKLLEENVKGVVSMNEDYEL---YFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKA 120 (295)
Q Consensus 44 ~~~L~~~gi~~Vv~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~ 120 (295)
....++.|.+..+++...... .+..........|.+.+ -+.|..+.-....+.+.++.+.+.... .++-+||+.
T Consensus 114 v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i--~l~Dt~G~~~P~~v~~lv~~~~~~~~~-~~l~~H~Hn 190 (237)
T PF00682_consen 114 VKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADII--YLADTVGIMTPEDVAELVRALREALPD-IPLGFHAHN 190 (237)
T ss_dssp HHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEE--EEEETTS-S-HHHHHHHHHHHHHHSTT-SEEEEEEBB
T ss_pred HHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEE--EeeCccCCcCHHHHHHHHHHHHHhccC-CeEEEEecC
Confidence 456777999998887554421 11111222334466554 555665667777788888888877765 789999987
Q ss_pred CCcch
Q psy7475 121 GRTRS 125 (295)
Q Consensus 121 G~~Rs 125 (295)
-.|=+
T Consensus 191 d~Gla 195 (237)
T PF00682_consen 191 DLGLA 195 (237)
T ss_dssp TTS-H
T ss_pred Cccch
Confidence 66543
No 255
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=25.27 E-value=5.2e+02 Score=23.55 Aligned_cols=81 Identities=10% Similarity=0.041 Sum_probs=48.9
Q ss_pred HHHHHcCCcEEEEccccccc---ccccchhhhhhcCceEEEeecCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCCC
Q psy7475 45 NKLLEENVKGVVSMNEDYEL---YFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAG 121 (295)
Q Consensus 45 ~~L~~~gi~~Vv~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G 121 (295)
+..++.|....+++...... .+..........|... +.+.|..+.-....+.+.++.+.+.. +-++-+||+.-
T Consensus 123 ~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~--I~l~DT~G~~~P~~v~~lv~~l~~~~--~~~l~~H~Hnd 198 (378)
T PRK11858 123 EYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEAGADR--VRFCDTVGILDPFTMYELVKELVEAV--DIPIEVHCHND 198 (378)
T ss_pred HHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhCCCCE--EEEeccCCCCCHHHHHHHHHHHHHhc--CCeEEEEecCC
Confidence 45677898877765332211 1111122334456654 55567767777777887777777665 56899999977
Q ss_pred CcchHHHH
Q psy7475 122 RTRSATLV 129 (295)
Q Consensus 122 ~~Rs~~~~ 129 (295)
.|=+.+-+
T Consensus 199 ~GlA~AN~ 206 (378)
T PRK11858 199 FGMATANA 206 (378)
T ss_pred cCHHHHHH
Confidence 76544333
No 256
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=25.22 E-value=5.2e+02 Score=25.07 Aligned_cols=42 Identities=10% Similarity=0.090 Sum_probs=29.8
Q ss_pred HHHHHHHHHhCC-CeEEEECC--------------CCCChHHHHHHHHHHhcCCCCC
Q psy7475 253 GVDFIQRISKTG-GTVYVHCK--------------AGRTRSATLVGCYLMKLEPVPT 294 (295)
Q Consensus 253 ~~~~i~~~~~~~-~~vlVHC~--------------~G~~Rsg~~~~ayLm~~~~~~l 294 (295)
+++.|++.-++| .=+-|||. .=+||-|.+.++|++.+.+-++
T Consensus 297 ~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~R~tgIVSRGGSima~Wml~h~kENp 353 (607)
T PRK09284 297 FRDTLIEQAEQGVDYFTIHAGVLLRYVPLTAKRVTGIVSRGGSIMAKWCLAHHKENF 353 (607)
T ss_pred HHHHHHHHHHhCCCEEEEChhhHHHHHHHHhCcccCcccCCHHHHHHHHHHcCCcCc
Confidence 445555555554 45778886 2369999999999999877553
No 257
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=25.15 E-value=84 Score=28.32 Aligned_cols=19 Identities=42% Similarity=0.737 Sum_probs=14.6
Q ss_pred HHcCCeEEEEcCCCCcchH
Q psy7475 108 SKTGGTVYVHCKAGRTRSA 126 (295)
Q Consensus 108 ~~~~~~vlVHC~~G~~Rs~ 126 (295)
+..|..||.||.+|..+|+
T Consensus 145 I~~g~~ILThc~sg~lat~ 163 (339)
T PRK06036 145 LEDGDTVLTHCNAGRLACV 163 (339)
T ss_pred ccCCCEEEEecCCcccccc
Confidence 3457789999999976653
No 258
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=25.13 E-value=1.6e+02 Score=26.43 Aligned_cols=14 Identities=43% Similarity=0.797 Sum_probs=11.0
Q ss_pred HHcCC----eEEEEcCCC
Q psy7475 108 SKTGG----TVYVHCKAG 121 (295)
Q Consensus 108 ~~~~~----~vlVHC~~G 121 (295)
+.+|. .||.||.+|
T Consensus 140 I~dg~~~~~~ILThcnsg 157 (331)
T TIGR00512 140 IKKGVAAPLRVLTHCNTG 157 (331)
T ss_pred hcCCCCCCceEEeecCCc
Confidence 34566 799999987
No 259
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=24.93 E-value=4.5e+02 Score=22.68 Aligned_cols=81 Identities=9% Similarity=0.058 Sum_probs=43.9
Q ss_pred HHHHHHcCCcEEEEccc--cc--cc-ccccchhhhhhcCceEEEeecCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEc
Q psy7475 44 TNKLLEENVKGVVSMNE--DY--EL-YFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHC 118 (295)
Q Consensus 44 ~~~L~~~gi~~Vv~l~~--~~--~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC 118 (295)
.+..++.|....++++. .. +. .+..........|.+. +.+.|..+.-....+.+.++.+.+... .++-+||
T Consensus 124 i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~--i~l~DT~G~~~P~~v~~lv~~l~~~~~--~~l~~H~ 199 (275)
T cd07937 124 IKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADS--ICIKDMAGLLTPYAAYELVKALKKEVG--LPIHLHT 199 (275)
T ss_pred HHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCE--EEEcCCCCCCCHHHHHHHHHHHHHhCC--CeEEEEe
Confidence 35566677766655532 11 10 1111122333445554 445566666666667666666665543 6899999
Q ss_pred CCCCcchHHH
Q psy7475 119 KAGRTRSATL 128 (295)
Q Consensus 119 ~~G~~Rs~~~ 128 (295)
+.-.|-+.+-
T Consensus 200 Hnd~GlA~aN 209 (275)
T cd07937 200 HDTSGLAVAT 209 (275)
T ss_pred cCCCChHHHH
Confidence 8776654333
No 260
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=24.11 E-value=4.4e+02 Score=22.70 Aligned_cols=78 Identities=9% Similarity=0.044 Sum_probs=42.0
Q ss_pred HHHHHHcCCCEEEEcCccccc---ccccchhhhhhcCceEeeccCCCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEECCC
Q psy7475 197 TNKLLEENVKGVVSMNEDYEL---YFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKA 273 (295)
Q Consensus 197 ~~~l~~~gi~~Vv~l~~~~e~---~~~~~~~~~~~~~i~~~~~p~~d~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~ 273 (295)
.+..+++|....+++...... .+........+.|.. .+-+.|....-.++.+.+.++.+.+...++-++-+||+.
T Consensus 115 i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~--~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn 192 (266)
T cd07944 115 IKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPD--VFYIVDSFGSMYPEDIKRIISLLRSNLDKDIKLGFHAHN 192 (266)
T ss_pred HHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCC--EEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEeCC
Confidence 456666777777766443321 111111122223433 344555544566677777777776654434678888875
Q ss_pred CCC
Q psy7475 274 GRT 276 (295)
Q Consensus 274 G~~ 276 (295)
-.|
T Consensus 193 ~~G 195 (266)
T cd07944 193 NLQ 195 (266)
T ss_pred Ccc
Confidence 544
No 261
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=24.05 E-value=82 Score=18.07 Aligned_cols=16 Identities=19% Similarity=0.154 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhcCCCC
Q psy7475 278 SATLVGCYLMKLEPVP 293 (295)
Q Consensus 278 sg~~~~ayLm~~~~~~ 293 (295)
.|.|++||+=+++|-.
T Consensus 19 ~GlfvaAylQYrRg~~ 34 (37)
T CHL00008 19 AGLFVTAYLQYRRGDQ 34 (37)
T ss_pred HHHHHHHHHHHhhccc
Confidence 5789999998887754
No 262
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=24.01 E-value=4.6e+02 Score=22.44 Aligned_cols=79 Identities=9% Similarity=0.090 Sum_probs=48.7
Q ss_pred HHHHHcCCcEEEEccccccc---ccccchhhhhhcCceEEEeecCCCCCCchHHHHHHHHHHHHHHHHc-CCeEEEEcCC
Q psy7475 45 NKLLEENVKGVVSMNEDYEL---YFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKT-GGTVYVHCKA 120 (295)
Q Consensus 45 ~~L~~~gi~~Vv~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~-~~~vlVHC~~ 120 (295)
+..++.|+...+++...... .+..........|.. .+-+.|..+.-....+.+.++.+.+.... +-++-+||+.
T Consensus 121 ~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~--~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn 198 (268)
T cd07940 121 EYAKSHGLDVEFSAEDATRTDLDFLIEVVEAAIEAGAT--TINIPDTVGYLTPEEFGELIKKLKENVPNIKVPISVHCHN 198 (268)
T ss_pred HHHHHcCCeEEEeeecCCCCCHHHHHHHHHHHHHcCCC--EEEECCCCCCCCHHHHHHHHHHHHHhCCCCceeEEEEecC
Confidence 45666888877766443221 111112333445654 46777877777778888777777776532 2589999998
Q ss_pred CCcch
Q psy7475 121 GRTRS 125 (295)
Q Consensus 121 G~~Rs 125 (295)
..|=+
T Consensus 199 ~~GlA 203 (268)
T cd07940 199 DLGLA 203 (268)
T ss_pred CcchH
Confidence 76644
No 263
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=24.00 E-value=1.1e+02 Score=30.54 Aligned_cols=45 Identities=20% Similarity=0.345 Sum_probs=28.4
Q ss_pred hhhhcCceEeeccCCCCCCCCcHHHHHHHHHHHHHHHhCC--CeEEEECCCCCCh
Q psy7475 225 EWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTG--GTVYVHCKAGRTR 277 (295)
Q Consensus 225 ~~~~~~i~~~~~p~~d~~~~~~~~~~~~~~~~i~~~~~~~--~~vlVHC~~G~~R 277 (295)
.|++.|+.|. =|++.. .++..++.++.+.+.. +||+||-..-+|+
T Consensus 321 lFe~lG~~Y~-GpvDGH-------di~~Li~~l~~~k~~~~~~PvlvHv~T~KGk 367 (701)
T PLN02225 321 LFEELGLYYI-GPVDGH-------NIEDLVCVLREVSSLDSMGPVLVHVITEENR 367 (701)
T ss_pred cHHHcCCeEE-CccCCC-------CHHHHHHHHHHHHcCCCCCCEEEEEEecCCC
Confidence 4566677776 455544 3455556666655554 8999998766554
No 264
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=23.80 E-value=89 Score=26.97 Aligned_cols=27 Identities=15% Similarity=0.096 Sum_probs=20.8
Q ss_pred CCCCcchHHHHHHHHHHhhccCCChHHHHHH
Q psy7475 119 KAGRTRSATLVGCYLMKVTSRRWYDRIDENI 149 (295)
Q Consensus 119 ~~G~~Rs~~~~~~~l~~~~~~~~~~~~a~~~ 149 (295)
--|.||||+.+++-++ .|.+.++|.++
T Consensus 159 ~PGiSRSG~Ti~~~l~----~G~~r~~A~~f 185 (259)
T PF02673_consen 159 IPGISRSGATITAGLL----LGLDREEAARF 185 (259)
T ss_pred CCCcChHHHHHHHHHH----CCCCHHHHHHH
Confidence 3699999999988544 48888887654
No 265
>PLN02444 HMP-P synthase
Probab=23.73 E-value=4.5e+02 Score=25.55 Aligned_cols=83 Identities=8% Similarity=0.043 Sum_probs=48.3
Q ss_pred HcCCCEEEEcCcccccccccchhhhhhcCceEeeccCCCCCCCCcHHH------------HHHHHHHHHHHHhCC-CeEE
Q psy7475 202 EENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDK------------LERGVDFIQRISKTG-GTVY 268 (295)
Q Consensus 202 ~~gi~~Vv~l~~~~e~~~~~~~~~~~~~~i~~~~~p~~d~~~~~~~~~------------~~~~~~~i~~~~~~~-~~vl 268 (295)
++|-.+|.+|...... ....+.-++...+|+- +.|+.+. .+.+++.|++..++| .=+-
T Consensus 248 ~~GADTvMDLSTGgdi------~~iR~~Il~~spvPVG---TVPIYqA~~~~~~~~~~lt~d~~~d~ieeQaeqGVDfmT 318 (642)
T PLN02444 248 MWGADTVMDLSTGRHI------HETREWILRNSPVPVG---TVPIYQALEKVDGIAENLTWEVFRETLIEQAEQGVDYFT 318 (642)
T ss_pred HcCCCeEeeccCCCCH------HHHHHHHHHcCCCCcc---CccHHHHHHHhcCChhhCCHHHHHHHHHHHHHhCCCEEE
Confidence 4899999999876542 1111111222222221 2233222 233445666655554 5677
Q ss_pred EECC--------------CCCChHHHHHHHHHHhcCCCC
Q psy7475 269 VHCK--------------AGRTRSATLVGCYLMKLEPVP 293 (295)
Q Consensus 269 VHC~--------------~G~~Rsg~~~~ayLm~~~~~~ 293 (295)
|||. .=+||-|.+.++|++.+.+-+
T Consensus 319 IH~Gv~~~~v~~~~~R~tgIVSRGGSi~a~Wml~~~kEN 357 (642)
T PLN02444 319 IHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKEN 357 (642)
T ss_pred EChhhHHHHHHHHhCcccCceeCCcHHHHHHHHHcCCcC
Confidence 8886 236899999999999887654
No 266
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=23.68 E-value=83 Score=28.50 Aligned_cols=28 Identities=32% Similarity=0.477 Sum_probs=18.7
Q ss_pred hCCCeEEEECCCCCChHHHHHHHHHHhcCCC
Q psy7475 262 KTGGTVYVHCKAGRTRSATLVGCYLMKLEPV 292 (295)
Q Consensus 262 ~~~~~vlVHC~~G~~Rsg~~~~ayLm~~~~~ 292 (295)
..+.+++++|..| .||.. + +..+...|.
T Consensus 312 ~~~~~IvvyC~~G-~rS~~-A-a~~L~~~G~ 339 (355)
T PRK05597 312 SAGDEVVVYCAAG-VRSAQ-A-VAILERAGY 339 (355)
T ss_pred CCCCeEEEEcCCC-HHHHH-H-HHHHHHcCC
Confidence 4567999999998 57743 3 344455554
No 267
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=23.54 E-value=1.5e+02 Score=26.81 Aligned_cols=24 Identities=21% Similarity=0.459 Sum_probs=15.5
Q ss_pred HHHHHHHhCCCeEEEECCCCCChH
Q psy7475 255 DFIQRISKTGGTVYVHCKAGRTRS 278 (295)
Q Consensus 255 ~~i~~~~~~~~~vlVHC~~G~~Rs 278 (295)
++-.+....|..||.||.+|.-.+
T Consensus 138 ~~g~~~I~~g~~ILThc~sg~lat 161 (344)
T PRK05720 138 EHGLTLIRKGQGILTHCNAGWLAT 161 (344)
T ss_pred HHHHHHccCCCEEEEecCCCccee
Confidence 333334556778999999885443
No 268
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=23.53 E-value=5.3e+02 Score=23.73 Aligned_cols=83 Identities=12% Similarity=0.182 Sum_probs=47.8
Q ss_pred HcCCCEEEEcCcccccccccchhhhhhcCceEeeccCCCCCCCCcHHHHH------------HHHHHHHHHHhCC-CeEE
Q psy7475 202 EENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLE------------RGVDFIQRISKTG-GTVY 268 (295)
Q Consensus 202 ~~gi~~Vv~l~~~~e~~~~~~~~~~~~~~i~~~~~p~~d~~~~~~~~~~~------------~~~~~i~~~~~~~-~~vl 268 (295)
++|..+|.+|...... ....+.-++-..+|+- +.|..+.+. .+++.+++..++| .-+-
T Consensus 89 ~~GADtvMDLStGgdl------~eiR~~ii~~s~vPvG---TVPIYqA~~~~~~~~~~~t~d~~~~~v~~qa~~GVdfmT 159 (432)
T COG0422 89 KWGADTVMDLSTGGDL------HEIREWIIRNSPVPVG---TVPIYQALEEVNGKVEDLTEDDFFDTVEKQAEQGVDFMT 159 (432)
T ss_pred HhCcceeEecccCCCH------HHHHHHHHhcCCCCcC---CchHHHHHHHHhcchhhCCHHHHHHHHHHHHHhCCcEEE
Confidence 4899999999876432 2222222333333332 234333222 2345555555554 4456
Q ss_pred EECC----------------CCCChHHHHHHHHHHhcCCCC
Q psy7475 269 VHCK----------------AGRTRSATLVGCYLMKLEPVP 293 (295)
Q Consensus 269 VHC~----------------~G~~Rsg~~~~ayLm~~~~~~ 293 (295)
+||. .=+||-|.+.++|.+.+..-+
T Consensus 160 IHaGV~~~~~~~~~~~~R~~giVSRGGsi~a~Wml~~~~EN 200 (432)
T COG0422 160 IHAGVLLEYVPRTKRSGRVTGIVSRGGSIMAAWMLHNHKEN 200 (432)
T ss_pred eehhhhHHHHHHHHhcCceeeeeccchHHHHHHHHHcCCcC
Confidence 7872 226899999999999987654
No 269
>KOG0235|consensus
Probab=23.42 E-value=2.1e+02 Score=23.91 Aligned_cols=51 Identities=20% Similarity=0.238 Sum_probs=31.8
Q ss_pred CchHHHHHHHHHHHHHH----HHcCCeEEEEcCCCCcchHHHHHHHHHHhhccCCChHHHHHH
Q psy7475 91 TPDQDKLERGVDFIQRI----SKTGGTVYVHCKAGRTRSATLVGCYLMKVTSRRWYDRIDENI 149 (295)
Q Consensus 91 ~~~~~~~~~~~~~i~~~----~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~~~a~~~ 149 (295)
+.+...+.++..|.++. ..+|+.|+|+|++..-| ++++.. .+.+.++....
T Consensus 132 EsL~~~~~R~~~~~~e~i~~~~~~gk~Vli~aHGnsLR------~i~~~l--~g~s~~~i~~~ 186 (214)
T KOG0235|consen 132 ESLKDCLDRLLPFWNEEIAKESKEGKNVLIVAHGNSLR------AIVKHL--EGISDEAIKEL 186 (214)
T ss_pred ccHHHHHHHHHHHHHHhhhhhhcCCcEEEEEcCcHHHH------HHHHHH--hcCCHhhhhhe
Confidence 34455566666666654 45789999998764333 345556 67777765443
No 270
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=23.14 E-value=90 Score=17.91 Aligned_cols=16 Identities=6% Similarity=-0.018 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhcCCCC
Q psy7475 278 SATLVGCYLMKLEPVP 293 (295)
Q Consensus 278 sg~~~~ayLm~~~~~~ 293 (295)
+|.|++||+=+++|-.
T Consensus 19 ~GlfvaAylQYrRg~~ 34 (37)
T PRK00665 19 AGLFVAAWNQYKRGNQ 34 (37)
T ss_pred HHHHHHHHHHHhcccc
Confidence 5789999998887654
No 271
>PF14386 DUF4417: Domain of unknown function (DUF4417)
Probab=22.85 E-value=2e+02 Score=23.76 Aligned_cols=80 Identities=9% Similarity=0.003 Sum_probs=45.2
Q ss_pred HHHHHcCCCEEEEcCcccccccccchhhhhhcCceEeeccCCCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEECCCCCCh
Q psy7475 198 NKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTR 277 (295)
Q Consensus 198 ~~l~~~gi~~Vv~l~~~~e~~~~~~~~~~~~~~i~~~~~p~~d~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~R 277 (295)
..+++.|++.|=|++-..+..++.+....++.++........-. .....+.+...+..+.+.. +...|+|+ |..+
T Consensus 104 ~~~q~~Gi~VIP~v~W~~~~s~~~~~~gi~~~~ivaist~g~~~-~~~~~~~f~~Gl~em~~rl-~P~~ilvy---G~~~ 178 (200)
T PF14386_consen 104 AYWQSNGIKVIPNVSWSDKRSFDFCFDGIPKGSIVAISTNGCIN-NKEDKKLFLDGLREMLKRL-RPKHILVY---GGMP 178 (200)
T ss_pred HHHHHCCCeEcceEEecCcchHHHHHhhcccCCEEEEEEecccC-CHHHHHHHHHHHHHHHhcc-CCCeEEEE---CCch
Confidence 67888999999998766554444444444444544332222111 2333456666666666655 45778885 4445
Q ss_pred HHHHH
Q psy7475 278 SATLV 282 (295)
Q Consensus 278 sg~~~ 282 (295)
...++
T Consensus 179 ~~~~~ 183 (200)
T PF14386_consen 179 DEIFC 183 (200)
T ss_pred hHhhc
Confidence 44443
No 272
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=22.71 E-value=2.8e+02 Score=21.92 Aligned_cols=34 Identities=18% Similarity=0.318 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcchHHHH
Q psy7475 93 DQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLV 129 (295)
Q Consensus 93 ~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~ 129 (295)
..+.+.++++.|.+.+.++++|++. |.|.|..++
T Consensus 15 ~~~~i~~a~~~i~~~i~~~~~I~i~---G~G~S~~~A 48 (177)
T cd05006 15 LAEAIEQAAQLLAEALLNGGKILIC---GNGGSAADA 48 (177)
T ss_pred hHHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHH
Confidence 3567889999999998888888886 555555544
No 273
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=22.70 E-value=55 Score=29.12 Aligned_cols=16 Identities=44% Similarity=0.821 Sum_probs=13.0
Q ss_pred HHhCCCeEEEECCCCC
Q psy7475 260 ISKTGGTVYVHCKAGR 275 (295)
Q Consensus 260 ~~~~~~~vlVHC~~G~ 275 (295)
...++..||-||.+|.
T Consensus 146 ll~~~~~VLThCNaGa 161 (346)
T COG0182 146 LLPDGDTVLTHCNAGA 161 (346)
T ss_pred hhccCCeEEeeecCCc
Confidence 4556788999999984
No 274
>TIGR00753 undec_PP_bacA undecaprenyl-diphosphatase UppP. This is a family of small, highly hydrophobic proteins. Overexpression of this protein in Escherichia coli is associated with bacitracin resistance, and the protein was originally proposed to be an undecaprenol kinase and called bacA. It is now known to be an undecaprenyl pyrophosphate phosphatase (EC 3.6.1.27) and is renamed UppP.
Probab=22.58 E-value=93 Score=26.80 Aligned_cols=26 Identities=15% Similarity=0.192 Sum_probs=20.0
Q ss_pred CCCcchHHHHHHHHHHhhccCCChHHHHHH
Q psy7475 120 AGRTRSATLVGCYLMKVTSRRWYDRIDENI 149 (295)
Q Consensus 120 ~G~~Rs~~~~~~~l~~~~~~~~~~~~a~~~ 149 (295)
-|.||||+.+.+-++ .|++.++|.++
T Consensus 160 PGiSRSG~TI~a~l~----~G~~r~~Aa~f 185 (255)
T TIGR00753 160 PGVSRSGSTISGGLF----IGLNRKAAAEF 185 (255)
T ss_pred cCCCCchHHHHHHHH----cCCCHHHHHHH
Confidence 599999999988544 47888887654
No 275
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=22.47 E-value=1.4e+02 Score=29.88 Aligned_cols=46 Identities=20% Similarity=0.333 Sum_probs=29.6
Q ss_pred hhhhhcCceEEEeecCCCCCCchHHHHHHHHHHHHHHHHcC--CeEEEEcCCCCcc
Q psy7475 71 EEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTG--GTVYVHCKAGRTR 124 (295)
Q Consensus 71 ~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~--~~vlVHC~~G~~R 124 (295)
..++..|++|+- |++.++ +++.++.++++.+.+ +||+||-..-.|+
T Consensus 320 ~lFe~lG~~Y~G-pvDGHd-------i~~Li~~l~~~k~~~~~~PvlvHv~T~KGk 367 (701)
T PLN02225 320 TLFEELGLYYIG-PVDGHN-------IEDLVCVLREVSSLDSMGPVLVHVITEENR 367 (701)
T ss_pred CcHHHcCCeEEC-ccCCCC-------HHHHHHHHHHHHcCCCCCCEEEEEEecCCC
Confidence 346778888876 776653 344445555555554 8999997644443
No 276
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=22.29 E-value=1.5e+02 Score=24.93 Aligned_cols=43 Identities=19% Similarity=0.179 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhCCCeEEEECCCCCChHHHHHHHHHHhcCCCC
Q psy7475 250 LERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLMKLEPVP 293 (295)
Q Consensus 250 ~~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg~~~~ayLm~~~~~~ 293 (295)
+..+.++|....+.|.++.+....+ +||..-.+..|..+.|.+
T Consensus 16 ~~~a~e~i~~l~~~g~~~~~~tN~~-~~~~~~~~~~l~~~~g~~ 58 (236)
T TIGR01460 16 IPGAAEALNRLRAKGKPVVFLTNNS-SRSEEDYAEKLSSLLGVD 58 (236)
T ss_pred CcCHHHHHHHHHHCCCeEEEEECCC-CCCHHHHHHHHHHhcCCC
Confidence 4566788888888888888887765 788888888888866654
No 277
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=22.23 E-value=2.6e+02 Score=22.36 Aligned_cols=24 Identities=17% Similarity=0.390 Sum_probs=14.5
Q ss_pred HHHHHHHhCCCeEEEECCCCCChH
Q psy7475 255 DFIQRISKTGGTVYVHCKAGRTRS 278 (295)
Q Consensus 255 ~~i~~~~~~~~~vlVHC~~G~~Rs 278 (295)
+.+....+.|.-||+|+..+...|
T Consensus 143 ~~~~~~~~~g~Iil~Hd~~~~~~t 166 (191)
T TIGR02764 143 DRVVKNTKPGDIILLHASDSAKQT 166 (191)
T ss_pred HHHHhcCCCCCEEEEeCCCCcHhH
Confidence 333344456778999995544333
No 278
>PF02529 PetG: Cytochrome B6-F complex subunit 5; InterPro: IPR003683 This family consists of cytochrome b6/f complex subunit 5 (PetG). The cytochrome bf complex, found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase []. The purified complex from the unicellular alga Chlamydomonas reinhardtii contains seven subunits; namely four high molecular weight subunits (cytochrome f, Rieske iron-sulphur protein, cytochrome b6, and subunit IV) and three approximately miniproteins (PetG, PetL, and PetX) []. Stoichiometry measurements are consistent with every subunit being present as two copies per b6/f dimer. The absence of PetG affects either the assembly or stability of the cytochrome bf complex in C. reinhardtii [].; GO: 0009512 cytochrome b6f complex; PDB: 1Q90_G 2ZT9_G 1VF5_G 2D2C_G 2E74_G 2E75_G 2E76_G.
Probab=22.05 E-value=1e+02 Score=17.76 Aligned_cols=17 Identities=18% Similarity=0.165 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhcCCCCC
Q psy7475 278 SATLVGCYLMKLEPVPT 294 (295)
Q Consensus 278 sg~~~~ayLm~~~~~~l 294 (295)
.|.+++||+-+++|-.+
T Consensus 19 ~Glfv~Ay~QY~Rg~ql 35 (37)
T PF02529_consen 19 AGLFVAAYLQYRRGNQL 35 (37)
T ss_dssp HHHHHHHHHHHCS--TT
T ss_pred HHHHHHHHHHHhccccc
Confidence 57889999998887543
No 279
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=21.91 E-value=5.5e+02 Score=22.59 Aligned_cols=73 Identities=18% Similarity=0.047 Sum_probs=39.7
Q ss_pred HHHHHcCCcEEEEcccccccccccchhhhhhcCceEEEeecCCCCCCch------HHHHHHHHHHHHHHHHcCCeEEEEc
Q psy7475 45 NKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFDTPD------QDKLERGVDFIQRISKTGGTVYVHC 118 (295)
Q Consensus 45 ~~L~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------~~~~~~~~~~i~~~~~~~~~vlVHC 118 (295)
..|.+.|....+-...... .....+..|++++.++......... ...+..++..+.+.+++.++=+|||
T Consensus 23 ~~L~~~g~ev~vv~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ik~~~pDvv~~ 97 (357)
T PRK00726 23 EELKKRGWEVLYLGTARGM-----EARLVPKAGIEFHFIPSGGLRRKGSLANLKAPFKLLKGVLQARKILKRFKPDVVVG 97 (357)
T ss_pred HHHHhCCCEEEEEECCCch-----hhhccccCCCcEEEEeccCcCCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 5577778776654443321 1222233588888888643222222 1123334444555566667889999
Q ss_pred CCCC
Q psy7475 119 KAGR 122 (295)
Q Consensus 119 ~~G~ 122 (295)
....
T Consensus 98 ~~~~ 101 (357)
T PRK00726 98 FGGY 101 (357)
T ss_pred CCCc
Confidence 8644
No 280
>PRK12554 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=21.82 E-value=96 Score=27.05 Aligned_cols=26 Identities=15% Similarity=0.124 Sum_probs=20.2
Q ss_pred CCCcchHHHHHHHHHHhhccCCChHHHHHH
Q psy7475 120 AGRTRSATLVGCYLMKVTSRRWYDRIDENI 149 (295)
Q Consensus 120 ~G~~Rs~~~~~~~l~~~~~~~~~~~~a~~~ 149 (295)
-|.||||+.+.+-++ .|++.++|.++
T Consensus 166 PGiSRSG~TI~a~l~----~G~~r~~Aa~f 191 (276)
T PRK12554 166 PGVSRSGATIIAGLL----LGLTREAAARF 191 (276)
T ss_pred cCCCCchHHHHHHHH----cCCCHHHHHHH
Confidence 599999999887544 48888888654
No 281
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=21.74 E-value=1.9e+02 Score=23.46 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=26.2
Q ss_pred cHHHHHHHHHHHHHHHhCCCeEEEECCCCCChHHHH
Q psy7475 246 DQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATL 281 (295)
Q Consensus 246 ~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg~~ 281 (295)
..+.++++++.|.+...+|++|.+. |.|.|+.+
T Consensus 26 ~~~~i~~a~~~i~~al~~~~rI~i~---G~G~S~~~ 58 (192)
T PRK00414 26 NIHAIQRAAVLIADSFKAGGKVLSC---GNGGSHCD 58 (192)
T ss_pred hHHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHH
Confidence 3478999999999999999999887 66666553
No 282
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=21.68 E-value=1e+02 Score=26.80 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=20.3
Q ss_pred CCCcchHHHHHHHHHHhhccCCChHHHHHH
Q psy7475 120 AGRTRSATLVGCYLMKVTSRRWYDRIDENI 149 (295)
Q Consensus 120 ~G~~Rs~~~~~~~l~~~~~~~~~~~~a~~~ 149 (295)
-|.||||+.+.+-++ .|.+.++|.++
T Consensus 164 PGiSRSG~TI~~~l~----~G~~r~~Aa~f 189 (268)
T PRK00281 164 PGTSRSGATISGGLL----LGLSREAAAEF 189 (268)
T ss_pred CCCCccHHHHHHHHH----cCCCHHHHHHH
Confidence 599999999988544 48888887654
No 283
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=21.63 E-value=1.6e+02 Score=26.71 Aligned_cols=14 Identities=43% Similarity=0.826 Sum_probs=9.8
Q ss_pred HhCCCeEEEECCCCC
Q psy7475 261 SKTGGTVYVHCKAGR 275 (295)
Q Consensus 261 ~~~~~~vlVHC~~G~ 275 (295)
..+|. ||.||.+|.
T Consensus 158 i~dg~-ILTHcnaG~ 171 (356)
T PRK08334 158 LPEGN-VLTHCNAGS 171 (356)
T ss_pred cCCCC-EEEecCcch
Confidence 33444 999998765
No 284
>COG0588 GpmA Phosphoglycerate mutase 1 [Carbohydrate transport and metabolism]
Probab=21.48 E-value=1.3e+02 Score=25.16 Aligned_cols=111 Identities=15% Similarity=0.166 Sum_probs=59.4
Q ss_pred cCceEEcCCcChhhHHHHHHcCCcEEEEccccccc---ccccchhhhhhcCceEEEeecCCCCC-CchHHHHHHHHHH--
Q psy7475 30 DENIILGALPFKRLTNKLLEENVKGVVSMNEDYEL---YFANGREEWNKVGVEFLQLSTRDIFD-TPDQDKLERGVDF-- 103 (295)
Q Consensus 30 ~~~ly~G~~~~~~~~~~L~~~gi~~Vv~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~-- 103 (295)
.++=| |.+..-.-.+..+++|-..|.--+.+.+. ......+.......+|-+++....+. +.+-+.+.+++-|
T Consensus 86 NERhY-G~LqGlnK~~t~~kyGeeqv~~wRRsydi~PP~~~~~~~~~~~~d~ry~~~~~~~~p~~EsLkdt~~Rv~Pyw~ 164 (230)
T COG0588 86 NERHY-GALQGLNKAETAAKYGEEQVLIWRRSYDIPPPKLEKDDERSPHRDRRYAHLDIGGLPLTESLKDTVERVLPYWE 164 (230)
T ss_pred hhhhh-hhhhcCChHHHHHHHhHHHHHHHHHhcCCCCCCcccccccccccccccccccccCCCccchHHHHHHHhhHHHH
Confidence 33444 55555444466666776666554444332 11111223334456777777665442 2333345555444
Q ss_pred --HHHHHHcCCeEEEEcCCCCcchHHHHHHHHHHhhccCCChHHHHHH
Q psy7475 104 --IQRISKTGGTVYVHCKAGRTRSATLVGCYLMKVTSRRWYDRIDENI 149 (295)
Q Consensus 104 --i~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~~~a~~~ 149 (295)
|.-.+++|++|+|- .+|.| +=+..+.. .++|-++....
T Consensus 165 ~~I~p~l~~Gk~VlI~-AHGNS-----lRaLiK~L--~~iSd~dI~~l 204 (230)
T COG0588 165 DDIAPNLKSGKNVLIV-AHGNS-----LRALIKYL--EGISDEDILDL 204 (230)
T ss_pred HHhhHHHhCCCeEEEE-ecchh-----HHHHHHHH--hCCCHHHhhhc
Confidence 44456788999984 55543 22344555 78888886543
No 285
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=21.36 E-value=52 Score=23.72 Aligned_cols=18 Identities=11% Similarity=0.385 Sum_probs=15.5
Q ss_pred CCCcccccCceEEcCCcC
Q psy7475 23 RRWYDRIDENIILGALPF 40 (295)
Q Consensus 23 ~~~~~~i~~~ly~G~~~~ 40 (295)
..|+-+|.+++|+|+...
T Consensus 20 t~wllEv~~GVyVg~~S~ 37 (97)
T PRK11558 20 AVWLLEVRAGVYVGDVSR 37 (97)
T ss_pred hhheEecCCCcEEcCCCH
Confidence 678999999999997644
No 286
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=21.30 E-value=1.4e+02 Score=29.26 Aligned_cols=45 Identities=13% Similarity=0.389 Sum_probs=26.7
Q ss_pred hhhcCceEEEeecCCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcch
Q psy7475 73 WNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRS 125 (295)
Q Consensus 73 ~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs 125 (295)
++..|++|.. |++.+ + +++..+.++.+.+.++|++|||..=+|+.
T Consensus 234 f~~~G~~~~~-~vDGh---d----~~~l~~al~~ak~~~~P~~i~~~T~KGkG 278 (617)
T TIGR00204 234 FEELGFNYIG-PVDGH---D----LLELIETLKNAKKLKGPVFLHIQTKKGKG 278 (617)
T ss_pred HHHcCCcEEc-ccCCC---C----HHHHHHHHHHHhcCCCCEEEEEEecCCCC
Confidence 6667887775 66433 2 22333334455555689999998555544
No 287
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=21.16 E-value=1.4e+02 Score=25.69 Aligned_cols=84 Identities=13% Similarity=0.204 Sum_probs=46.9
Q ss_pred EEEcCCcChhcHHHHHHcCCCEEEEcCccccc-ccccchhhhhhcCceEeeccCCC---CCCCCcHHHHHHHHHHHHHHH
Q psy7475 186 IILGALPFKRLTNKLLEENVKGVVSMNEDYEL-YFANGREEWNKVGVEFLQLSTRD---IFDTPDQDKLERGVDFIQRIS 261 (295)
Q Consensus 186 l~~g~~p~~~~~~~l~~~gi~~Vv~l~~~~e~-~~~~~~~~~~~~~i~~~~~p~~d---~~~~~~~~~~~~~~~~i~~~~ 261 (295)
+..|......-.+++.+.++..|||.+.+.-. --.+......+.|+.|..+.=+. .+.-...+.++++++.+.+..
T Consensus 47 v~~g~l~~~~l~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~eR~~~~~~~~~~~v~~~~ea~~~~~~~~ 126 (256)
T TIGR00715 47 VHTGALDPQELREFLKRHSIDILVDATHPFAAQITTNATAVCKELGIPYVRFERPPLALGKNIIEVPDIEEATRVAYQPY 126 (256)
T ss_pred EEECCCCHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEEECCCCCCCCCeEEeCCHHHHHHHhhhcc
Confidence 44444333333377888999999999887643 11233455667889888884222 111122345666666553310
Q ss_pred hCCCeEEE
Q psy7475 262 KTGGTVYV 269 (295)
Q Consensus 262 ~~~~~vlV 269 (295)
..+++|+.
T Consensus 127 ~~~~~i~l 134 (256)
T TIGR00715 127 LRGKRVFL 134 (256)
T ss_pred ccCCcEEE
Confidence 12456665
No 288
>TIGR03642 cas_csx13 CRISPR-associated protein, Csx13 family. This model describes a protein N-terminal protein sequence domain strictly associated with CRISPR and CRISPR-associated protein systems. This model and TIGR02584 identify two separate clades from a larger homology domain family, both CRISPR-associated, while other homologs are found that may not be. Members are found in bacteria that include Pelotomaculum thermopropionicum SI, Thermoanaerobacter tengcongensis MB4, and Roseiflexus sp. RS-1, and in archaea that include Thermoplasma volcanium, Picrophilus torridus, and Methanospirillum hungatei. The molecular function is unknown.
Probab=21.15 E-value=3.4e+02 Score=20.52 Aligned_cols=55 Identities=16% Similarity=0.170 Sum_probs=26.5
Q ss_pred eccCCCCCCCCc-HHHHHHHHHHHHHHHhCCCe-EEEECCCCCCh-HHHHHHHHHHhcC
Q psy7475 235 QLSTRDIFDTPD-QDKLERGVDFIQRISKTGGT-VYVHCKAGRTR-SATLVGCYLMKLE 290 (295)
Q Consensus 235 ~~p~~d~~~~~~-~~~~~~~~~~i~~~~~~~~~-vlVHC~~G~~R-sg~~~~ayLm~~~ 290 (295)
.+|++|-..+.. ...++.+.+.|.+..++++. .+--|-+| || +-++.++|.+.-.
T Consensus 58 ~~~~~DI~t~~d~~~~~~~I~~~i~~l~~~~~~~~lh~~iaG-GRK~Ms~~~~~a~sl~ 115 (124)
T TIGR03642 58 PLKFDDILSDEDILTFMSIAAKEVKKERENYGCERIIVNISG-GRKIMTIILALYAQLL 115 (124)
T ss_pred ccCccccCCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEecC-CHHHHHHHHHHHHHHh
Confidence 345555532222 23344444555555555442 34445567 55 5555666655443
No 289
>cd01720 Sm_D2 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit D2 heterodimerizes with subunit D1 and three such heterodimers form a hexameric ring structure with alternating D1 and D2 subunits. The D1 - D2 heterodimer also assembles into a heptameric ring containing D2, D3, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=20.89 E-value=1.3e+02 Score=21.18 Aligned_cols=30 Identities=10% Similarity=0.348 Sum_probs=22.9
Q ss_pred HHHHHHHHHcCCeEEEEcCCCCcchHHHHH
Q psy7475 101 VDFIQRISKTGGTVYVHCKAGRTRSATLVG 130 (295)
Q Consensus 101 ~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~ 130 (295)
++++..+...+++|+|+++.|..=.|++.+
T Consensus 4 l~~L~~~~~~~~~V~V~lr~~r~~~G~L~~ 33 (87)
T cd01720 4 LSLLTQAVKNNTQVLINCRNNKKLLGRVKA 33 (87)
T ss_pred HHHHHHHHcCCCEEEEEEcCCCEEEEEEEE
Confidence 356777777889999999999876665543
No 290
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=20.89 E-value=5.9e+02 Score=22.82 Aligned_cols=80 Identities=13% Similarity=0.020 Sum_probs=48.0
Q ss_pred hcHHHHHHcCCCEEEEcCccccc---ccccchhhhhhcCceEeeccCCCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEC
Q psy7475 195 RLTNKLLEENVKGVVSMNEDYEL---YFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHC 271 (295)
Q Consensus 195 ~~~~~l~~~gi~~Vv~l~~~~e~---~~~~~~~~~~~~~i~~~~~p~~d~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC 271 (295)
...+..++.|....+++...... .+....+...+.|.. .+-+.|....-.++.+.+.++.+.+.....-++-+||
T Consensus 118 ~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~--~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~ 195 (333)
T TIGR03217 118 QHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGAD--CVYIVDSAGAMLPDDVRDRVRALKAVLKPETQVGFHA 195 (333)
T ss_pred HHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCC--EEEEccCCCCCCHHHHHHHHHHHHHhCCCCceEEEEe
Confidence 44567778888888777443321 111111222333433 3455666556677888888888887665456888998
Q ss_pred CCCCC
Q psy7475 272 KAGRT 276 (295)
Q Consensus 272 ~~G~~ 276 (295)
+.-.|
T Consensus 196 HnnlG 200 (333)
T TIGR03217 196 HHNLS 200 (333)
T ss_pred CCCCc
Confidence 86655
No 291
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=20.86 E-value=6.2e+02 Score=22.73 Aligned_cols=80 Identities=11% Similarity=-0.024 Sum_probs=48.3
Q ss_pred hcHHHHHHcCCCEEEEcCccccc---ccccchhhhhhcCceEeeccCCCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEC
Q psy7475 195 RLTNKLLEENVKGVVSMNEDYEL---YFANGREEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHC 271 (295)
Q Consensus 195 ~~~~~l~~~gi~~Vv~l~~~~e~---~~~~~~~~~~~~~i~~~~~p~~d~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC 271 (295)
...+..++.|....+++...... .+........+.|.. .+-+.|....-.++.+.+.++.+.+....+-++-+||
T Consensus 119 ~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~--~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~ 196 (337)
T PRK08195 119 QHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQ--CVYVVDSAGALLPEDVRDRVRALRAALKPDTQVGFHG 196 (337)
T ss_pred HHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCC--EEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEEe
Confidence 34567778898888877544321 111111223334443 3556666556677888888888877664457888888
Q ss_pred CCCCC
Q psy7475 272 KAGRT 276 (295)
Q Consensus 272 ~~G~~ 276 (295)
+.-.|
T Consensus 197 HnnlG 201 (337)
T PRK08195 197 HNNLG 201 (337)
T ss_pred CCCcc
Confidence 86554
No 292
>TIGR03586 PseI pseudaminic acid synthase.
Probab=20.75 E-value=3.9e+02 Score=23.97 Aligned_cols=38 Identities=13% Similarity=0.065 Sum_probs=23.1
Q ss_pred HHHcCCcEEEEcccccccccccchhhhhhcCceEEEeecCCCCC
Q psy7475 47 LLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRDIFD 90 (295)
Q Consensus 47 L~~~gi~~Vv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 90 (295)
-++.|+..+-+.-+... .+.....++..+.++-.|..+
T Consensus 86 ~~~~Gi~~~stpfd~~s------vd~l~~~~v~~~KI~S~~~~n 123 (327)
T TIGR03586 86 AKELGLTIFSSPFDETA------VDFLESLDVPAYKIASFEITD 123 (327)
T ss_pred HHHhCCcEEEccCCHHH------HHHHHHcCCCEEEECCccccC
Confidence 34467777766665543 344455667777777666543
No 293
>TIGR02613 mob_myst_B mobile mystery protein B. Members of this protein family, which we designate mobile mystery protein B, are found in mobization-related contexts more often than not, including within a CRISPR-associated gene region in Geobacter sulfurreducens PCA, and on plasmids in Agrobacterium tumefaciens and Coxiella burnetii, always together with mobile mystery protein A (TIGR02612), a member of the family of helix-turn-helix DNA binding proteins (pfam01381). This protein is encoded by the downstream member of the gene pair and belongs to the Fic protein family (pfam02661), where Fic (filamentation induced by cAMP) is a regulator of cell division. The characteristics of having a two-gene operon in a varied context and often on plasmids, with one member affecting cell division and the other able to bind DNA, suggests similarity to addiction modules.
Probab=20.48 E-value=1.1e+02 Score=24.80 Aligned_cols=27 Identities=26% Similarity=0.303 Sum_probs=24.0
Q ss_pred EEEEC-CCCCChHHHHHHHHHHhcCCCC
Q psy7475 267 VYVHC-KAGRTRSATLVGCYLMKLEPVP 293 (295)
Q Consensus 267 vlVHC-~~G~~Rsg~~~~ayLm~~~~~~ 293 (295)
+.+|. ..|-||||-+..-+++.+.|.+
T Consensus 120 ~~IHPF~DGNGRt~Rll~~l~L~~~g~~ 147 (186)
T TIGR02613 120 VAIHPFPNGNGRHARLATDLLLEQQGYS 147 (186)
T ss_pred heecCcCCCCcHHHHHHHHHHHHHCCCC
Confidence 66888 7999999999999999998875
No 294
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=20.33 E-value=61 Score=22.32 Aligned_cols=16 Identities=25% Similarity=0.443 Sum_probs=12.5
Q ss_pred eEEEECCCCCChHHHH
Q psy7475 266 TVYVHCKAGRTRSATL 281 (295)
Q Consensus 266 ~vlVHC~~G~~Rsg~~ 281 (295)
+|++-|.+|+|=|-.+
T Consensus 1 kIlvvC~~Gi~TS~~~ 16 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMV 16 (90)
T ss_dssp EEEEEESSSSHHHHHH
T ss_pred CEEEECCChHHHHHHH
Confidence 5899999999955433
No 295
>PF09623 Cas_NE0113: CRISPR-associated protein NE0113 (Cas_NE0113); InterPro: IPR019092 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a Cas protein family found in both bacteria and arachaea. The function of these proteins is unknown.
Probab=20.08 E-value=2.4e+02 Score=23.79 Aligned_cols=41 Identities=12% Similarity=0.150 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHcCCeEEEEcCCCCcchHHHHHHHHHHh
Q psy7475 96 KLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLMKV 136 (295)
Q Consensus 96 ~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~ 136 (295)
..+.+.+.|.+..++.+..+.-|-+|.-++-++.+.|.+..
T Consensus 96 ~~~~I~~~i~~l~~~~~~~lh~sIAGGRKtMs~~~~~a~sL 136 (224)
T PF09623_consen 96 FADFIYRLIRELKQDPGRRLHVSIAGGRKTMSFYAGYAASL 136 (224)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEEecCChHHHHHHHHHHHHH
Confidence 34444444555555545455556677656888888777766
Done!