RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7475
(295 letters)
>gnl|CDD|214551 smart00195, DSPc, Dual specificity phosphatase, catalytic domain.
Length = 138
Score = 66.9 bits (164), Expect = 9e-14
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 8/108 (7%)
Query: 28 RIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRD 87
I ++ LG+ + N L + + + + N +N +L + D
Sbjct: 3 EILPHLYLGS--YSDALNLALLKKL------GITHVINVTNEVPNYNGSDFTYLGVPIDD 54
Query: 88 IFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLMK 135
+T V+FI+ GG V VHC+AG +RSATL+ YLMK
Sbjct: 55 NTETKISPYFPEAVEFIEDAESKGGKVLVHCQAGVSRSATLIIAYLMK 102
Score = 66.9 bits (164), Expect = 9e-14
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 8/108 (7%)
Query: 181 RIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEFLQLSTRD 240
I ++ LG+ + N L + + + + N +N +L + D
Sbjct: 3 EILPHLYLGS--YSDALNLALLKKL------GITHVINVTNEVPNYNGSDFTYLGVPIDD 54
Query: 241 IFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLMK 288
+T V+FI+ GG V VHC+AG +RSATL+ YLMK
Sbjct: 55 NTETKISPYFPEAVEFIEDAESKGGKVLVHCQAGVSRSATLIIAYLMK 102
>gnl|CDD|216117 pfam00782, DSPc, Dual specificity phosphatase, catalytic domain.
Ser/Thr and Tyr protein phosphatases. The enzyme's
tertiary fold is highly similar to that of
tyrosine-specific phosphatases, except for a
"recognition" region.
Length = 131
Score = 65.0 bits (159), Expect = 3e-13
Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 70 REEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLV 129
G+ +L + D +T L V+FI + GG V VHC+AG +RSATL+
Sbjct: 30 PNSNLNSGILYLGIPVEDNHETNISKYLPEAVEFIDDAIQKGGKVLVHCQAGISRSATLI 89
Query: 130 GCYLMKV 136
YLMK
Sbjct: 90 IAYLMKT 96
Score = 65.0 bits (159), Expect = 3e-13
Identities = 25/66 (37%), Positives = 34/66 (51%)
Query: 223 REEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLV 282
G+ +L + D +T L V+FI + GG V VHC+AG +RSATL+
Sbjct: 30 PNSNLNSGILYLGIPVEDNHETNISKYLPEAVEFIDDAIQKGGKVLVHCQAGISRSATLI 89
Query: 283 GCYLMK 288
YLMK
Sbjct: 90 IAYLMK 95
>gnl|CDD|238073 cd00127, DSPc, Dual specificity phosphatases (DSP); Ser/Thr and Tyr
protein phosphatases. Structurally similar to
tyrosine-specific phosphatases but with a shallower
active site cleft and a distinctive active site
signature motif, HCxxGxxR. Characterized as VHR- or
Cdc25-like.
Length = 139
Score = 63.4 bits (155), Expect = 2e-12
Identities = 37/113 (32%), Positives = 48/113 (42%), Gaps = 16/113 (14%)
Query: 28 RIDENIILGALPFKRLTNKLLEENVKGV--VSMNEDYELYFANGREEWNKVGVEFLQLST 85
I + LG+ P L + + V V+ E F + +L +
Sbjct: 4 EITPGLYLGSYPAASDKELLKKLGITHVLNVAKEVPNENLFLSD--------FNYLYVP- 54
Query: 86 RDIFDTPDQDK---LERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLMK 135
I D P QD + VDFI + GG V VHC AG +RSATLV YLMK
Sbjct: 55 --ILDLPSQDISKYFDEAVDFIDDAREKGGKVLVHCLAGVSRSATLVIAYLMK 105
Score = 63.4 bits (155), Expect = 2e-12
Identities = 37/113 (32%), Positives = 48/113 (42%), Gaps = 16/113 (14%)
Query: 181 RIDENIILGALPFKRLTNKLLEENVKGV--VSMNEDYELYFANGREEWNKVGVEFLQLST 238
I + LG+ P L + + V V+ E F + +L +
Sbjct: 4 EITPGLYLGSYPAASDKELLKKLGITHVLNVAKEVPNENLFLSD--------FNYLYVP- 54
Query: 239 RDIFDTPDQDK---LERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLMK 288
I D P QD + VDFI + GG V VHC AG +RSATLV YLMK
Sbjct: 55 --ILDLPSQDISKYFDEAVDFIDDAREKGGKVLVHCLAGVSRSATLVIAYLMK 105
>gnl|CDD|225297 COG2453, CDC14, Predicted protein-tyrosine phosphatase [Signal
transduction mechanisms].
Length = 180
Score = 54.4 bits (131), Expect = 5e-09
Identities = 31/134 (23%), Positives = 50/134 (37%), Gaps = 18/134 (13%)
Query: 15 VFMEKVTSRRWYDR---IDENIILGALPFKRLTNKLLEENVKGVVSMN--------EDYE 63
+ I I G + + + E ++ ++S+ E
Sbjct: 1 LEHPAGNLPSADFEATAILSEIYPGEVSIRGVRPLGYELGIQTILSLINALVIEELELLG 60
Query: 64 LYFANGREEWNKVGVEFLQLSTRDIFD--TPDQDKLERGVDFIQRISKTGGTVYVHCKAG 121
+ EE + + V L I D PD + L++ VDFI+ G V VHC+ G
Sbjct: 61 ALYNVAIEENDGIQVLHLP-----ILDGTVPDLEDLDKIVDFIEEALSKGKKVVVHCQGG 115
Query: 122 RTRSATLVGCYLMK 135
RS T++ YLM
Sbjct: 116 IGRSGTVIAAYLML 129
Score = 54.4 bits (131), Expect = 5e-09
Identities = 31/134 (23%), Positives = 50/134 (37%), Gaps = 18/134 (13%)
Query: 168 VFMEKVTSRRWYDR---IDENIILGALPFKRLTNKLLEENVKGVVSMN--------EDYE 216
+ I I G + + + E ++ ++S+ E
Sbjct: 1 LEHPAGNLPSADFEATAILSEIYPGEVSIRGVRPLGYELGIQTILSLINALVIEELELLG 60
Query: 217 LYFANGREEWNKVGVEFLQLSTRDIFD--TPDQDKLERGVDFIQRISKTGGTVYVHCKAG 274
+ EE + + V L I D PD + L++ VDFI+ G V VHC+ G
Sbjct: 61 ALYNVAIEENDGIQVLHLP-----ILDGTVPDLEDLDKIVDFIEEALSKGKKVVVHCQGG 115
Query: 275 RTRSATLVGCYLMK 288
RS T++ YLM
Sbjct: 116 IGRSGTVIAAYLML 129
>gnl|CDD|183473 PRK12361, PRK12361, hypothetical protein; Provisional.
Length = 547
Score = 37.7 bits (88), Expect = 0.006
Identities = 38/148 (25%), Positives = 55/148 (37%), Gaps = 35/148 (23%)
Query: 4 RVTFYPSLF----YNVFMEKVTSRRWYDRIDENIILGALPFKRLTNKLLEENVKGVVSMN 59
R F P L YN + K S +IDEN+ LG F KL + ++
Sbjct: 69 RWVFIPFLLGTRLYNAWARKRDSVPAIQKIDENLYLGCRLFPADLEKLKSNKITAILD-- 126
Query: 60 EDYELYFANGREEWNKVGVEF--LQLSTRD---------IFD--TPDQDKLERGVDFIQR 106
V EF L S + I D P +L + +++I R
Sbjct: 127 ----------------VTAEFDGLDWSLTEEDIDYLNIPILDHSVPTLAQLNQAINWIHR 170
Query: 107 ISKTGGTVYVHCKAGRTRSATLVGCYLM 134
+ +V VHC GR RS ++ YL+
Sbjct: 171 QVRANKSVVVHCALGRGRSVLVLAAYLL 198
Score = 36.5 bits (85), Expect = 0.012
Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 31/124 (25%)
Query: 181 RIDENIILGALPFKRLTNKLLEENVKGVVSMNEDYELYFANGREEWNKVGVEF--LQLST 238
+IDEN+ LG F KL + ++ V EF L S
Sbjct: 97 KIDENLYLGCRLFPADLEKLKSNKITAILD------------------VTAEFDGLDWSL 138
Query: 239 RD---------IFD--TPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLM 287
+ I D P +L + +++I R + +V VHC GR RS ++ YL+
Sbjct: 139 TEEDIDYLNIPILDHSVPTLAQLNQAINWIHRQVRANKSVVVHCALGRGRSVLVLAAYLL 198
Query: 288 KLEP 291
+P
Sbjct: 199 CKDP 202
>gnl|CDD|214649 smart00404, PTPc_motif, Protein tyrosine phosphatase, catalytic
domain motif.
Length = 105
Score = 31.9 bits (73), Expect = 0.11
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 105 QRISKTGGTVYVHCKAGRTRSATLVGCYLMKVTSRRWYDRID 146
S++ G V VHC AG R+ T V ++ +D
Sbjct: 33 LNQSESSGPVVVHCSAGVGRTGTFVAIDILLQQLEAEAGEVD 74
Score = 31.9 bits (73), Expect = 0.11
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 258 QRISKTGGTVYVHCKAGRTRSATLVGCYLM 287
S++ G V VHC AG R+ T V ++
Sbjct: 33 LNQSESSGPVVVHCSAGVGRTGTFVAIDIL 62
>gnl|CDD|214469 smart00012, PTPc_DSPc, Protein tyrosine phosphatase, catalytic
domain, undefined specificity. Protein tyrosine
phosphatases. Homologues detected by this profile and
not by those of "PTPc" or "DSPc" are predicted to be
protein phosphatases with a similar fold to DSPs and
PTPs, yet with unpredicted specificities.
Length = 105
Score = 31.9 bits (73), Expect = 0.11
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 105 QRISKTGGTVYVHCKAGRTRSATLVGCYLMKVTSRRWYDRID 146
S++ G V VHC AG R+ T V ++ +D
Sbjct: 33 LNQSESSGPVVVHCSAGVGRTGTFVAIDILLQQLEAEAGEVD 74
Score = 31.9 bits (73), Expect = 0.11
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 258 QRISKTGGTVYVHCKAGRTRSATLVGCYLM 287
S++ G V VHC AG R+ T V ++
Sbjct: 33 LNQSESSGPVVVHCSAGVGRTGTFVAIDIL 62
>gnl|CDD|225240 COG2365, COG2365, Protein tyrosine/serine phosphatase [Signal
transduction mechanisms].
Length = 249
Score = 32.4 bits (74), Expect = 0.22
Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 4/73 (5%)
Query: 63 ELYFANGREEWNKVGVEFLQLSTRDI-FDTPDQDKLERGVDFIQRISKTGGTVYVHCKAG 121
+ + W+K + S R ++L + + G V +HC AG
Sbjct: 90 VELYTDHLINWDKAA-IIMFESYRSFPTREDAAERLVELLQLL--ADAENGPVLIHCTAG 146
Query: 122 RTRSATLVGCYLM 134
+ R+ + Y
Sbjct: 147 KDRTGLVAALYRK 159
Score = 32.4 bits (74), Expect = 0.22
Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 4/73 (5%)
Query: 216 ELYFANGREEWNKVGVEFLQLSTRDI-FDTPDQDKLERGVDFIQRISKTGGTVYVHCKAG 274
+ + W+K + S R ++L + + G V +HC AG
Sbjct: 90 VELYTDHLINWDKAA-IIMFESYRSFPTREDAAERLVELLQLL--ADAENGPVLIHCTAG 146
Query: 275 RTRSATLVGCYLM 287
+ R+ + Y
Sbjct: 147 KDRTGLVAALYRK 159
>gnl|CDD|111998 pfam03162, Y_phosphatase2, Tyrosine phosphatase family. This
family is closely related to the pfam00102 and pfam00782
families.
Length = 150
Score = 30.8 bits (70), Expect = 0.39
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 84 STRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGC 131
+D F L R + + ++K V +HC G+ R+ ++GC
Sbjct: 66 GNKDPFVNIPSHLLRRALKLL--LNKDNYPVLIHCNRGKHRTGLVIGC 111
Score = 30.8 bits (70), Expect = 0.39
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 237 STRDIFDTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGC 284
+D F L R + + ++K V +HC G+ R+ ++GC
Sbjct: 66 GNKDPFVNIPSHLLRRALKLL--LNKDNYPVLIHCNRGKHRTGLVIGC 111
>gnl|CDD|113060 pfam04273, DUF442, Putative phosphatase (DUF442). Although this
domain is uncharacterized it seems likely that it
performs a phosphatase function.
Length = 110
Score = 29.4 bits (66), Expect = 0.77
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
Query: 91 TPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVG 130
T + F + ++ G V HC++G TR+ L
Sbjct: 71 TEADVE-----AFQRALAAAEGPVLAHCRSG-TRALNLYA 104
Score = 29.4 bits (66), Expect = 0.77
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
Query: 244 TPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVG 283
T + F + ++ G V HC++G TR+ L
Sbjct: 71 TEADVE-----AFQRALAAAEGPVLAHCRSG-TRALNLYA 104
>gnl|CDD|225984 COG3453, COG3453, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 130
Score = 29.6 bits (67), Expect = 0.79
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 90 DTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVG 130
+ +E F + + + G V +C++G TRS L G
Sbjct: 69 GGITEADVE---AFQRALDEAEGPVLAYCRSG-TRSLNLYG 105
Score = 29.6 bits (67), Expect = 0.79
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 243 DTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVG 283
+ +E F + + + G V +C++G TRS L G
Sbjct: 69 GGITEADVE---AFQRALDEAEGPVLAYCRSG-TRSLNLYG 105
>gnl|CDD|240399 PTZ00393, PTZ00393, protein tyrosine phosphatase; Provisional.
Length = 241
Score = 28.7 bits (64), Expect = 3.3
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 90 DTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLMK 135
D P D + + + + K V VHC AG R+ L L++
Sbjct: 149 DAPTVDIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAPVLASIVLIE 194
Score = 28.7 bits (64), Expect = 3.3
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 243 DTPDQDKLERGVDFIQRISKTGGTVYVHCKAGRTRSATLVGCYLMK 288
D P D + + + + K V VHC AG R+ L L++
Sbjct: 149 DAPTVDIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAPVLASIVLIE 194
>gnl|CDD|215717 pfam00102, Y_phosphatase, Protein-tyrosine phosphatase.
Length = 233
Score = 28.4 bits (64), Expect = 3.4
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 101 VDFIQRISK-----TGGTVYVHCKAGRTRSATLVG 130
+D I+++ K G + VHC AG R+ T +
Sbjct: 153 LDLIRKVRKSQADPRSGPIVVHCSAGVGRTGTFIA 187
Score = 28.4 bits (64), Expect = 3.4
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 254 VDFIQRISK-----TGGTVYVHCKAGRTRSATLVG 283
+D I+++ K G + VHC AG R+ T +
Sbjct: 153 LDLIRKVRKSQADPRSGPIVVHCSAGVGRTGTFIA 187
>gnl|CDD|237130 PRK12535, PRK12535, RNA polymerase sigma factor; Provisional.
Length = 196
Score = 28.3 bits (63), Expect = 3.9
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 120 AGRTRSATLVGCYLMKVTSRRWYDRIDENIILGALPFKRLTNKEDRNNVFMEKVTSRRWY 179
A R+ + T +L+ + R W D I ++ A P K T ED T+ W
Sbjct: 70 AARSSART----WLLSLARRVWVDNIRHDM---ARPRKSATEYEDAAATTASNETTGSWS 122
Query: 180 DRIDENIILGALPFKR 195
+ ID ++ ALP +R
Sbjct: 123 EWIDVRTLIDALPPER 138
>gnl|CDD|184997 PRK15037, PRK15037, D-mannonate oxidoreductase; Provisional.
Length = 486
Score = 28.5 bits (63), Expect = 5.6
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 66 FANGREEWNKVGVEFL 81
F NGR +W+KVG +F+
Sbjct: 266 FVNGRPDWDKVGAQFV 281
Score = 28.5 bits (63), Expect = 5.6
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 219 FANGREEWNKVGVEFL 234
F NGR +W+KVG +F+
Sbjct: 266 FVNGRPDWDKVGAQFV 281
>gnl|CDD|233334 TIGR01263, 4HPPD, 4-hydroxyphenylpyruvate dioxygenase. This
protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and
phenylalanine catabolite, to homogentisate.
Homogentisate can undergo a further non-enzymatic
oxidation and polymerization into brown pigments that
protect some bacterial species from light. A similar
process occurs spontaneously in blood and is hemolytic
(see PMID:8000039). In some bacterial species, this
enzyme has been studied as a hemolysin [Energy
metabolism, Amino acids and amines].
Length = 353
Score = 27.6 bits (62), Expect = 7.5
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 71 EEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVY 115
E +N GV+ + L+T DI T + RGV+F+ T T Y
Sbjct: 232 EFYNGAGVQHIALNTDDIVRTVRALR-ARGVEFL----DTPDTYY 271
Score = 27.6 bits (62), Expect = 7.5
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 224 EEWNKVGVEFLQLSTRDIFDTPDQDKLERGVDFIQRISKTGGTVY 268
E +N GV+ + L+T DI T + RGV+F+ T T Y
Sbjct: 232 EFYNGAGVQHIALNTDDIVRTVRALR-ARGVEFL----DTPDTYY 271
>gnl|CDD|165179 PHA02836, PHA02836, putative transmembrane protein; Provisional.
Length = 153
Score = 27.2 bits (60), Expect = 8.5
Identities = 10/47 (21%), Positives = 22/47 (46%)
Query: 1 MFARVTFYPSLFYNVFMEKVTSRRWYDRIDENIILGALPFKRLTNKL 47
M R+ F P N+F++ + ++D+ N++ L K ++
Sbjct: 43 MVGRIGFVPVGIGNLFLKLMNLNTYFDKDSINLLTSNLSKKGFISRF 89
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.139 0.420
Gapped
Lambda K H
0.267 0.0705 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,603,917
Number of extensions: 1529787
Number of successful extensions: 1228
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1228
Number of HSP's successfully gapped: 47
Length of query: 295
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 199
Effective length of database: 6,679,618
Effective search space: 1329243982
Effective search space used: 1329243982
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.6 bits)