Query psy7476
Match_columns 143
No_of_seqs 121 out of 359
Neff 3.6
Searched_HMMs 29240
Date Fri Aug 16 19:18:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7476.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7476hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_X RP37, S28, YS14, 40S ri 100.0 1.1E-75 3.7E-80 454.8 12.1 143 1-143 3-145 (145)
2 2xzm_L 40S ribosomal protein S 100.0 2.3E-74 7.9E-79 446.1 13.4 139 1-140 3-141 (142)
3 3j20_N 30S ribosomal protein S 100.0 8.4E-74 2.9E-78 445.0 11.8 141 3-143 6-147 (147)
4 2vqe_L 30S ribosomal protein S 100.0 2E-44 6.7E-49 277.1 6.8 88 36-132 22-109 (135)
5 1jt8_A EIF-1A, probable transl 63.1 4.2 0.00014 29.2 2.4 48 45-103 20-68 (102)
6 1d7q_A Translation initiation 55.3 7.9 0.00027 29.5 2.8 50 43-103 29-79 (143)
7 2dgy_A MGC11102 protein; EIF-1 54.2 6.8 0.00023 28.5 2.2 49 44-103 14-63 (111)
8 3i4o_A Translation initiation 49.8 11 0.00036 26.0 2.5 47 46-103 15-63 (79)
9 2wnv_C C1Q chain C, complement 38.6 45 0.0015 23.6 4.5 51 47-104 48-107 (131)
10 1vco_A CTP synthetase; tetrame 28.7 22 0.00076 31.9 1.7 21 96-120 144-164 (550)
11 1s1m_A CTP synthase; CTP synth 27.2 24 0.00083 31.6 1.7 22 95-120 132-153 (545)
12 1n9r_A SMF, small nuclear ribo 26.6 52 0.0018 22.6 3.0 59 63-130 27-87 (93)
13 3jxo_A TRKA-N domain protein; 22.8 1.5E+02 0.005 18.5 4.9 31 69-104 41-71 (86)
No 1
>3u5c_X RP37, S28, YS14, 40S ribosomal protein S23-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_L 3o30_P 3o2z_P 3u5g_X 3j2k_X 3jyv_L* 1s1h_L* 2zkq_l 3iz6_L
Probab=100.00 E-value=1.1e-75 Score=454.78 Aligned_cols=143 Identities=76% Similarity=1.230 Sum_probs=141.2
Q ss_pred CCCCcchhhhHhhhhhhccccccchhhhhhcccccccCCCCCCCCccceeEEeeeeccccCCCcccccEEEEEEeecCeE
Q psy7476 1 MGKPRGIRTARKHVNNRRVQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK 80 (143)
Q Consensus 1 ~~k~~Gl~~arkl~~~r~~~r~~dk~ykk~~lg~~~k~~~l~g~Pq~kGivl~~~~~~pKkPNSA~RK~~rV~L~kngk~ 80 (143)
||+|+||||||+|+++|++|||+|++|+++||++++|++||+|+||++|||++++++||||||||+||||||||++||++
T Consensus 3 ~~k~~Gl~aarkl~~~r~~~rw~dk~ykk~~lg~~~K~~~l~g~pq~kGivl~~~~~~pKkPNSA~RK~arV~L~kngk~ 82 (145)
T 3u5c_X 3 KGKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKK 82 (145)
T ss_dssp CSSCCCSSCHHHHHHHHHHHHTTSHHHHHHHHTHHHHSSSSCSSSEEEEEEEEEEBCBCCTTCCCBCCEEEEEETTTCCE
T ss_pred CCccCcHHHHHHHHHHHHHhhhhhhHHHHHhcCcccccCccCCCCccCeEEEEEeecccCCCCccceeEEEEEEccCCCE
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred EEEeecCCCccCCcccccEEEEeeecCCCCcCCCCCCceEEEEEeccccHHHHHhhhccCCCC
Q psy7476 81 ITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143 (143)
Q Consensus 81 v~A~IPg~G~l~~lqeh~~VLV~G~G~~Gg~v~DlPGVrykvvrv~~vsl~~l~~gkkekp~r 143 (143)
||||||||||||||||||+|||+|||++||+++|||||+|+||||+||||+|||+||||||++
T Consensus 83 vtAyIPg~G~l~~lqEh~~VLV~G~G~~Gg~v~DlPGVrykvVrv~~vsl~al~kgkkekp~~ 145 (145)
T 3u5c_X 83 VTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS 145 (145)
T ss_dssp EEEECCSSSCGGGCCTTCEEEEECCSSSSSCCSSSTTCCEEEEESTTTCHHHHHHTSCCCCCC
T ss_pred EEEEeCCCCccccCCcCCEEEEEeccccCCccCCCCceeEEEEEECCeeHHHHHhccccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999985
No 2
>2xzm_L 40S ribosomal protein S12; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_L 3j0o_L 3j0l_L 3j0p_L 3j0q_L 3iz6_L 3jyv_L* 1s1h_L*
Probab=100.00 E-value=2.3e-74 Score=446.11 Aligned_cols=139 Identities=71% Similarity=1.187 Sum_probs=137.7
Q ss_pred CCCCcchhhhHhhhhhhccccccchhhhhhcccccccCCCCCCCCccceeEEeeeeccccCCCcccccEEEEEEeecCeE
Q psy7476 1 MGKPRGIRTARKHVNNRRVQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK 80 (143)
Q Consensus 1 ~~k~~Gl~~arkl~~~r~~~r~~dk~ykk~~lg~~~k~~~l~g~Pq~kGivl~~~~~~pKkPNSA~RK~~rV~L~kngk~ 80 (143)
||||+||||||+|+.+|++|||+|++|+++||++++| +||+|+||++|||++++++||||||||+||||||||++||++
T Consensus 3 ~~k~~Gl~aarkl~~~r~~~rw~d~~ykk~~l~~~~K-~pl~g~pq~kGIvl~~~~~~pKkPNSA~RK~arVqL~kNgk~ 81 (142)
T 2xzm_L 3 VGKPRGIRAGRKLARHRKDQRWADNDFNKRLLGSRWR-NPFMGASHAKGLVTEKIGIESKQPNSAVRKCVRVLLRKNSKK 81 (142)
T ss_dssp CSSCCCSSCHHHHHHHHHHHGGGCHHHHHHHTTCGGG-STTTTCSEEEEEEEEEEEEECCTTCCCEEEEEEEEETTTCCE
T ss_pred CCCcchHHHHHHHHHHHHHhccchhHHHHHhhccccc-CcccCCCccceEEEEEEecccCCCCcccccEEEEEEecCCeE
Confidence 7899999999999999999999999999999999999 999999999999999999999999999999999999889999
Q ss_pred EEEeecCCCccCCcccccEEEEeeecCCCCcCCCCCCceEEEEEeccccHHHHHhhhccC
Q psy7476 81 ITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKER 140 (143)
Q Consensus 81 v~A~IPg~G~l~~lqeh~~VLV~G~G~~Gg~v~DlPGVrykvvrv~~vsl~~l~~gkkek 140 (143)
||||||||||||||||||+|||+|||++||+++|||||+|+||||+||||+|||+|||||
T Consensus 82 vtAyIPg~G~l~~lqEh~~VLVrG~G~~ggrv~DlPGVrykvVrv~~vsl~al~kgkkek 141 (142)
T 2xzm_L 82 IAAFVPMDGCLNFLAENDEVLVAGLGRQGHAVGDIPGVRFKVVCVKGISLLALFKGKKEK 141 (142)
T ss_dssp EEEECCSSSGGGTCCTTCEEEEEESSSSSSCCTTCSSCCEEEEEESSCBHHHHHSTTTCC
T ss_pred EEEEeCCCCcccccccCCEEEEEecccCCCccCCCCCceEEEEEECCeeHHHHhhccccc
Confidence 999999999999999999999999999999999999999999999999999999999998
No 3
>3j20_N 30S ribosomal protein S12P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=8.4e-74 Score=445.00 Aligned_cols=141 Identities=55% Similarity=0.890 Sum_probs=139.4
Q ss_pred CCcchhhhHhhhhhhccccccchhhhhhcccccccCCCCCCCCccceeEEeeeeccccCCCcccccEEEEEEeecCeEEE
Q psy7476 3 KPRGIRTARKHVNNRRVQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKIT 82 (143)
Q Consensus 3 k~~Gl~~arkl~~~r~~~r~~dk~ykk~~lg~~~k~~~l~g~Pq~kGivl~~~~~~pKkPNSA~RK~~rV~L~kngk~v~ 82 (143)
+|+||||||+|+++|++|||+|++|+++||+++.|++||+|+||++|||++++++||||||||+||||||||++||++||
T Consensus 6 ~~~Gl~aarkl~~~r~~~rw~d~~ykk~~lg~~~K~~~l~g~pq~kGIvl~~~~~~pKkPNSA~RK~arV~L~kngk~vt 85 (147)
T 3j20_N 6 APNGEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVT 85 (147)
T ss_dssp SCCCSTBHHHHHHHHHHHHTTSHHHHHHHHTHHHHHSSSTTCSCEEEEEEEEEEEECCSSCCCEEEEEEEEETTTCCEEE
T ss_pred CCChHHHHHHHHHHHHhhccccHHHHHHHhccccccchhhcCCccceEEEEEeecCCCCCCceeeeEEEEEEccCCcEEE
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred EeecCCCccCCcccccEEEEeeec-CCCCcCCCCCCceEEEEEeccccHHHHHhhhccCCCC
Q psy7476 83 AFVPRDGCLNYIEENDEVLVAGFG-RKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143 (143)
Q Consensus 83 A~IPg~G~l~~lqeh~~VLV~G~G-~~Gg~v~DlPGVrykvvrv~~vsl~~l~~gkkekp~r 143 (143)
||||||||||||||||+|||+||| ++||+++|||||+|+||+|+||||+|||+||||||+|
T Consensus 86 AyIPg~Ghln~lqEh~~VLV~G~gg~~gg~v~DlPGVrykvVkv~~vsl~al~kgkkekp~r 147 (147)
T 3j20_N 86 AFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPRR 147 (147)
T ss_dssp EECCSSSGGGTCCTTCEEEEEECSCTTSCCCSSCSSCCEEEEEETTEEHHHHHSTTTCCCCC
T ss_pred EEcCCchhhcccccCCEEEEeeccCcCCCccCCCCceeEEEEEECCeeHHHHHhcccccCCC
Confidence 999999999999999999999999 9999999999999999999999999999999999987
No 4
>2vqe_L 30S ribosomal protein S12, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1gix_O* 1hnw_L* 1hnx_L* 1hnz_L* 1hr0_L 1ibk_L* 1ibl_L* 1ibm_L 1j5e_L 1jgo_O* 1jgp_O* 1jgq_O* 1mj1_O* 1ml5_O* 1mvr_O 1n32_L* 1n33_L* 1n34_L 1n36_L 1xmo_L* ...
Probab=100.00 E-value=2e-44 Score=277.07 Aligned_cols=88 Identities=34% Similarity=0.606 Sum_probs=82.9
Q ss_pred ccCCCCCCCCccceeEEeeeeccccCCCcccccEEEEEEeecCeEEEEeecCCCccCCcccccEEEEeeecCCCCcCCCC
Q psy7476 36 WKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDI 115 (143)
Q Consensus 36 ~k~~~l~g~Pq~kGivl~~~~~~pKkPNSA~RK~~rV~L~kngk~v~A~IPg~G~l~~lqeh~~VLV~G~G~~Gg~v~Dl 115 (143)
.|++||+|+||++|||+++++++|||||||+|||||||| +||++|||||||||| ||||||+|||+| |+++||
T Consensus 22 ~k~~~l~g~Pq~kGv~l~v~~~~pKKPNSA~RK~arVrL-~ngk~VtAyIPG~Gh--nlqEhs~VLVrG-----grv~Dl 93 (135)
T 2vqe_L 22 SKVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRL-TSGYEVTAYIPGEGH--NLQEHSVVLIRG-----GRVKDL 93 (135)
T ss_dssp CSCCCSSSCSEEEEEESCCCEECCCTTCCCCEECCEEEE-TTSCEEEEECCSSCC--CCCTTCEEEEEE-----CCCTTS
T ss_pred CcCCcccCCCCcCeEEEEEEecCCCCCchhheeEEEEEc-CCCCEEEEEcCCCCC--ccCcCCEEEEcC-----CCcCCC
Confidence 478999999999999999999999999999999999999 999999999999996 999999999998 999999
Q ss_pred CCceEEEEEeccccHHH
Q psy7476 116 PGVRFKVVKVANVSLLA 132 (143)
Q Consensus 116 PGVrykvvrv~~vsl~~ 132 (143)
|||+|+|||++ .++..
T Consensus 94 PGVrykvVrG~-lD~~g 109 (135)
T 2vqe_L 94 PGVRYHIVRGV-YDAAG 109 (135)
T ss_dssp TTCCEEECTTS-TTSCC
T ss_pred CCeeEEEEeEe-ecCcc
Confidence 99999999997 44433
No 5
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=63.12 E-value=4.2 Score=29.19 Aligned_cols=48 Identities=27% Similarity=0.317 Sum_probs=34.3
Q ss_pred CccceeEEeeeeccccCCCcccccEEEEEEeecCeEEEEeecCCCc-cCCcccccEEEEe
Q psy7476 45 SHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGC-LNYIEENDEVLVA 103 (143)
Q Consensus 45 Pq~kGivl~~~~~~pKkPNSA~RK~~rV~L~kngk~v~A~IPg~G~-l~~lqeh~~VLV~ 103 (143)
-|.-|.|++.. ||. -.+|+| .||.+++|+|||-=. ---|.+.|.|+|+
T Consensus 20 ~e~~g~V~~~l------gn~----~~~V~l-~nG~~~la~i~GKmRk~IwI~~GD~VlVe 68 (102)
T 1jt8_A 20 NEILGIIEQML------GAS----RVRVRC-LDGKTRLGRIPGRLKNRIWVREGDVVIVK 68 (102)
T ss_dssp CCEEEEEECSS------CSS----EEEEEE-ETTEEEEEECCHHHHHHHCCCSCEEEEEC
T ss_pred CEEEEEEEEEc------CCC----EEEEEE-CCCCEEEEEEcccceeeEEecCCCEEEEE
Confidence 36666666654 443 367999 899999999998421 0137789999997
No 6
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=55.31 E-value=7.9 Score=29.48 Aligned_cols=50 Identities=16% Similarity=0.161 Sum_probs=37.4
Q ss_pred CCCccceeEEeeeeccccCCCcccccEEEEEEeecCeEEEEeecCCCcc-CCcccccEEEEe
Q psy7476 43 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCL-NYIEENDEVLVA 103 (143)
Q Consensus 43 g~Pq~kGivl~~~~~~pKkPNSA~RK~~rV~L~kngk~v~A~IPg~G~l-~~lqeh~~VLV~ 103 (143)
..-|.-|.|++.+ ||.- .+|+| -||.+++|+|||-=.- --|.+.|.|+|+
T Consensus 29 ~ege~~g~V~e~l------gn~~----f~V~l-~nG~~~La~I~GKmRk~IwI~~GD~VlVe 79 (143)
T 1d7q_A 29 EDGQEYAQVIKML------GNGR----LEAMC-FDGVKRLCHIRGKLRKKVWINTSDIILVG 79 (143)
T ss_dssp CTTEEEEEEEEEC------SSSE----EEEEE-TTTEEEEEECCSGGGGSCCCCTTCEEEEE
T ss_pred CCCEEEEEEEEEc------CCCE----EEEEe-CCCCEEEEEecccceeeEEecCCCEEEEe
Confidence 3457788888776 4443 78999 8999999999984321 246789999997
No 7
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.23 E-value=6.8 Score=28.45 Aligned_cols=49 Identities=18% Similarity=0.187 Sum_probs=36.6
Q ss_pred CCccceeEEeeeeccccCCCcccccEEEEEEeecCeEEEEeecCCCc-cCCcccccEEEEe
Q psy7476 44 ASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGC-LNYIEENDEVLVA 103 (143)
Q Consensus 44 ~Pq~kGivl~~~~~~pKkPNSA~RK~~rV~L~kngk~v~A~IPg~G~-l~~lqeh~~VLV~ 103 (143)
.-|.-|.|++.. ||. -.+|+| -||.+++|+|||-=. ---|.+.|.|+|+
T Consensus 14 ege~~g~V~~~l------gn~----~f~V~l-~nG~~~la~i~GK~Rk~IwI~~GD~VlVe 63 (111)
T 2dgy_A 14 NQQQIVRVLRTP------GNN----LHEVET-AQGQRFLVSMPSKYRKNIWIKRGDFLIVD 63 (111)
T ss_dssp SSCEEEEEEECC------SSS----EEEEEC-TTSCEEEEECCTTCCSCCCCCSSCEEEEE
T ss_pred CCeEEEEEEEeC------CCC----EEEEEe-CCCCEEEEEechhhcccEEEcCCCEEEEE
Confidence 347777777765 343 468898 899999999998533 1137799999998
No 8
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=49.75 E-value=11 Score=25.97 Aligned_cols=47 Identities=32% Similarity=0.506 Sum_probs=34.4
Q ss_pred ccceeEEeeeeccccCCCcccccEEEEEEeecCeEEEEeecCCCccC--CcccccEEEEe
Q psy7476 46 HAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLN--YIEENDEVLVA 103 (143)
Q Consensus 46 q~kGivl~~~~~~pKkPNSA~RK~~rV~L~kngk~v~A~IPg~G~l~--~lqeh~~VLV~ 103 (143)
+..|+|++.+ ||+- .+|+| .||..+.|+|+|-=-.| -+-+.|.|+|+
T Consensus 15 e~~G~Vik~l------~n~~----f~V~l-~nG~~~~c~i~GK~Rk~~I~Il~GD~V~ve 63 (79)
T 3i4o_A 15 EVEGRVVEPL------PNAM----FRIEL-ENGHKVLAHISGKMRQHYIRILPEDRVVVE 63 (79)
T ss_dssp EEEEEEEEEE------TTTE----EEEEE-TTSCEEEEEECHHHHHTTCCCCTTCEEEEE
T ss_pred EEEEEEEEEc------CCCE----EEEEe-CCCCEEEEEeCcceecCCccCCCCCEEEEE
Confidence 4567777765 4543 56898 79999999999853221 37889999997
No 9
>2wnv_C C1Q chain C, complement C1Q subcomponent subunit C; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_C 2wnu_C* 2jg9_C* 1pk6_C
Probab=38.59 E-value=45 Score=23.57 Aligned_cols=51 Identities=20% Similarity=0.218 Sum_probs=34.4
Q ss_pred cceeEEeeeeccccCCCcccccEEEEEEeecCeEEEEeecCCCc---------cCCcccccEEEEee
Q psy7476 47 AKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGC---------LNYIEENDEVLVAG 104 (143)
Q Consensus 47 ~kGivl~~~~~~pKkPNSA~RK~~rV~L~kngk~v~A~IPg~G~---------l~~lqeh~~VLV~G 104 (143)
..|+=.=.+.+.... -+.|.|.+||..+.+|....+. +-.|++.|+|-|+-
T Consensus 48 ~~G~Y~Fs~~~~~~~-------~~~v~L~~Ng~~~~~~~~~~~~~~~~~S~~~~L~L~~GD~V~v~~ 107 (131)
T 2wnv_C 48 VPGLYYFVYHASHTA-------NLCVLLYRSGVKVVTFCGHTSKTNQVNSGGVLLRLQVGEEVWLAV 107 (131)
T ss_dssp SCEEEEEEEEEEESS-------CEEEEEEETTEEEEEEEECCSSSCEEEEEEEEEEECTTCEEEEEE
T ss_pred cCCEEEEEEEEEECC-------eEEEEEEECCeEEEEEEecCCCcccEEeeeEEEEECCCCEEEEEE
Confidence 456655555555431 4788999999888888663221 33689999999884
No 10
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=28.72 E-value=22 Score=31.88 Aligned_cols=21 Identities=38% Similarity=0.612 Sum_probs=18.1
Q ss_pred cccEEEEeeecCCCCcCCCCCCceE
Q psy7476 96 ENDEVLVAGFGRKGHAVGDIPGVRF 120 (143)
Q Consensus 96 eh~~VLV~G~G~~Gg~v~DlPGVry 120 (143)
++|.|+|+| ||.++||-+..|
T Consensus 144 ~~d~~i~e~----~gt~~di~~~~~ 164 (550)
T 1vco_A 144 KAEIVVVEV----GGTVGDIESLPF 164 (550)
T ss_dssp TCSEEEEEE----CSCTTSSTTHHH
T ss_pred CCCEEEEEC----CCChhHhhhHHH
Confidence 689999999 899999987654
No 11
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=27.24 E-value=24 Score=31.57 Aligned_cols=22 Identities=50% Similarity=0.688 Sum_probs=18.5
Q ss_pred ccccEEEEeeecCCCCcCCCCCCceE
Q psy7476 95 EENDEVLVAGFGRKGHAVGDIPGVRF 120 (143)
Q Consensus 95 qeh~~VLV~G~G~~Gg~v~DlPGVry 120 (143)
+++|.|+|+| ||+++||-+..|
T Consensus 132 ~~~d~~i~e~----~gt~~di~~~~~ 153 (545)
T 1s1m_A 132 EGHDVVLVEI----GGTVGDIESLPF 153 (545)
T ss_dssp TTCSEEEEEE----CSCTTSSTTHHH
T ss_pred ccCCEEEEEC----CCChhhhhChHH
Confidence 3789999999 899999987654
No 12
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=26.64 E-value=52 Score=22.57 Aligned_cols=59 Identities=22% Similarity=0.256 Sum_probs=34.0
Q ss_pred CcccccEEEEEEeecC-eEEEEeecC-CCccCCcccccEEEEeeecCCCCcCCCCCCceEEEEEeccccH
Q psy7476 63 NSAIRKCVRVQLIKNG-KKITAFVPR-DGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSL 130 (143)
Q Consensus 63 NSA~RK~~rV~L~kng-k~v~A~IPg-~G~l~~lqeh~~VLV~G~G~~Gg~v~DlPGVrykvvrv~~vsl 130 (143)
++++-+-+.|.| +|| .++...+=| |.++|-.=++-+..++| +....|. .-+|||++|-+
T Consensus 27 ~~~i~k~V~V~L-k~g~~~~~G~L~~~D~~MNlvL~d~~E~~~~-----~~~~~lg---~v~IRG~nI~~ 87 (93)
T 1n9r_A 27 KGLVNHRVGVKL-KFNSTEYRGTLVSTDNYFNLQLNEAEEFVAG-----VSHGTLG---EIFIRCNNVLY 87 (93)
T ss_dssp GGGTTSEEEEEE-SSTTEEEEEEEEECCTTTCEEEEEEEEEETT-----EEEEECC---SEEECGGGEEE
T ss_pred HHhCCCEEEEEE-cCCCEEEEEEEEEEccccEEEEeeEEEEcCC-----CeEeEcC---EEEEcCCeEEE
Confidence 456678899999 899 888877544 55554333333333332 2222222 23677777643
No 13
>3jxo_A TRKA-N domain protein; TRKA K+ channel component, structural genomics, PSI-2-2, Pro structure initiative, joint center for structural genomics; 1.55A {Thermotoga SP}
Probab=22.81 E-value=1.5e+02 Score=18.53 Aligned_cols=31 Identities=23% Similarity=0.400 Sum_probs=20.6
Q ss_pred EEEEEEeecCeEEEEeecCCCccCCcccccEEEEee
Q psy7476 69 CVRVQLIKNGKKITAFVPRDGCLNYIEENDEVLVAG 104 (143)
Q Consensus 69 ~~rV~L~kngk~v~A~IPg~G~l~~lqeh~~VLV~G 104 (143)
+.=+.+..++..+ +|.... .|++.|.++|-|
T Consensus 41 ~~i~~I~R~~~~~---~p~~~~--~l~~GD~l~v~g 71 (86)
T 3jxo_A 41 SIIAAIVRGGVLV---VPRGDT--EILSGDKLYVIV 71 (86)
T ss_dssp EEEEEEEETTEEE---CCCTTC--BCCTTCEEEEEE
T ss_pred CEEEEEEECCEEE---CCCCCC--EECCCCEEEEEE
Confidence 3333444556433 586665 899999999985
Done!