BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7477
(237 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2APN|A Chain A, Hi1723 Solution Structure
Length = 114
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 56/96 (58%), Gaps = 7/96 (7%)
Query: 108 LVIHDSCIKKLKEI-----STDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGC 162
L D+ K+K + +TD LR+ + GGGCSGFQY F D +V+D D EKSG
Sbjct: 9 LTFTDAAANKVKSLISEEENTDLK-LRVYITGGGCSGFQYGFTFDEKVNDGDLTIEKSGV 67
Query: 163 KVVIDQTSLEYVQGSVIEYHQELIRSAFQISNNPQV 198
++VID SL+Y+ G ++Y + L S F + NNP
Sbjct: 68 QLVIDPMSLQYLIGGTVDYTEGLEGSRFTV-NNPNA 102
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 28 LVIHDSCIKKLKEI-----STDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGC 82
L D+ K+K + +TD LR+ + GGGCSGFQY F D +V+D D EKSG
Sbjct: 9 LTFTDAAANKVKSLISEEENTDLK-LRVYITGGGCSGFQYGFTFDEKVNDGDLTIEKSGV 67
Query: 83 KI 84
++
Sbjct: 68 QL 69
>pdb|1NWB|A Chain A, Solution Nmr Structure Of Protein Aq_1857 From Aquifex
Aeolicus: Northeast Structural Genomics Consortium
Target Qr6
Length = 124
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query: 110 IHDSCIKKLKEISTDGSF----LRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVV 165
+ D ++++K+++ + + LRI V GGCSGFQY D V + D V+E G KVV
Sbjct: 12 VTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGVKVV 71
Query: 166 IDQTSLEYVQGSVIEYHQELIRSAFQISN 194
ID S+ YV G+ ++Y + + F I N
Sbjct: 72 IDPFSMPYVNGAELDYVVDFMGGGFTIRN 100
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 30 IHDSCIKKLKEISTDGSF----LRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKI 84
+ D ++++K+++ + + LRI V GGCSGFQY D V + D V+E G K+
Sbjct: 12 VTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGVKV 70
>pdb|1R94|A Chain A, Crystal Structure Of Isca (mercury Derivative)
pdb|1R94|B Chain B, Crystal Structure Of Isca (mercury Derivative)
pdb|1R95|A Chain A, Crystal Structure Of Isca (Native)
pdb|1R95|B Chain B, Crystal Structure Of Isca (Native)
Length = 118
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 128 LRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIEYHQELIR 187
LR+ V GCSG Y E + + ED V+E G KVV+D SL+++ G+ +++ +E +
Sbjct: 26 LRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLN 85
Query: 188 SAFQISNNPQVE 199
F+ + NP V+
Sbjct: 86 EGFKFT-NPNVK 96
Score = 30.8 bits (68), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 48 LRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKI 84
LR+ V GCSG Y E + + ED V+E G K+
Sbjct: 26 LRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKV 62
>pdb|1S98|A Chain A, E.Coli Isca Crystal Structure To 2.3 A
pdb|1S98|B Chain B, E.Coli Isca Crystal Structure To 2.3 A
Length = 107
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 128 LRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIEYHQELIR 187
LR+ V GCSG Y E + + ED V+E G KVV+D S++++ G+ +++ +E +
Sbjct: 26 LRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSMQFLDGTQLDFVKEGLN 85
Query: 188 SAFQISNNPQVE 199
F+ + NP V+
Sbjct: 86 EGFKFT-NPNVK 96
Score = 30.8 bits (68), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 48 LRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKI 84
LR+ V GCSG Y E + + ED V+E G K+
Sbjct: 26 LRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKV 62
>pdb|2D2A|A Chain A, Crystal Structure Of Escherichia Coli Sufa Involved In
Biosynthesis Of Iron-Sulfur Clusters
pdb|2D2A|B Chain B, Crystal Structure Of Escherichia Coli Sufa Involved In
Biosynthesis Of Iron-Sulfur Clusters
Length = 145
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 38/67 (56%)
Query: 128 LRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIEYHQELIR 187
+R+ V+ GC+GF Y + ++ +D ++E G K+ + ++ ++ G+ +++ +E +
Sbjct: 64 VRLGVKQTGCAGFGYVLDSVSEPDKDDLLFEHDGAKLFVPLQAMPFIDGTEVDFVREGLN 123
Query: 188 SAFQISN 194
F+ N
Sbjct: 124 QIFKFHN 130
>pdb|1X0G|A Chain A, Crystal Structure Of Isca With The [2fe-2s] Cluster
pdb|1X0G|B Chain B, Crystal Structure Of Isca With The [2fe-2s] Cluster
pdb|1X0G|C Chain C, Crystal Structure Of Isca With The [2fe-2s] Cluster
pdb|1X0G|D Chain D, Crystal Structure Of Isca With The [2fe-2s] Cluster
Length = 112
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 113 SCIKKLKEISTDG------SFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVI 166
+ I++L+ + T G + LRI V+ C ++Y L + D + + G + I
Sbjct: 7 AAIQELERLQTHGVRRGQAAILRIQVQPSECGDWRYDLALVAEPKPTDLLTQSQGWTIAI 66
Query: 167 DQTSLEYVQGSVIEYHQELIRSAFQISNNPQVEQ 200
+ E ++G ++Y ++L+ AF+ +NP Q
Sbjct: 67 AAEAAELLRGLRVDYIEDLMGGAFRF-HNPNASQ 99
>pdb|2JD4|A Chain A, Mouse Laminin Alpha1 Chain, Domains Lg4-5
pdb|2JD4|B Chain B, Mouse Laminin Alpha1 Chain, Domains Lg4-5
Length = 383
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 12/82 (14%)
Query: 106 KDLVIHDSCIKKLKEISTDGSFLRIIVEGGGCSGF---QYKFELDTQVSDEDRVYEKSGC 162
KD + S + + ++ +G+F EG G + YK LD Q++ E R K+G
Sbjct: 181 KDRPLSASAVDRCYVVAQEGTFF----EGSGYAALVKEGYKVRLDLQITLEFRTTSKNGV 236
Query: 163 -----KVVIDQTSLEYVQGSVI 179
+D LE V G V+
Sbjct: 237 LLGISSAKVDAIGLEIVDGKVL 258
>pdb|2K4Z|A Chain A, Solution Nmr Structure Of Allochromatium Vinosum Dsrr:
Northeast Structural Genomics Consortium Target Op5
Length = 125
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 112 DSCIKKLKEISTDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVI----- 166
+ +K K+ T+G LR+ Y+ D D+ R+ + G ++VI
Sbjct: 31 EQVLKAAKQGGTEGMCLRLAAGRNPDGSIDYRMGFDDLTEDDIRLTSE-GVEIVIAPDYV 89
Query: 167 ---DQTSLEYVQGSVIEYH 182
DQT+L+YV+ ++H
Sbjct: 90 SLLDQTTLDYVELEPGQFH 108
>pdb|2ZAH|A Chain A, X-ray Structure Of Melon Necrotic Spot Virus
pdb|2ZAH|B Chain B, X-ray Structure Of Melon Necrotic Spot Virus
pdb|2ZAH|C Chain C, X-ray Structure Of Melon Necrotic Spot Virus
Length = 331
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 175 QGSVIEYHQELIRSAFQISNNPQVEQGNLTKGDHFISPSN 214
+GSV H+E I S SN+ V G++ G + ++PSN
Sbjct: 34 EGSVKIVHREFIASVLP-SNDLTVNNGDVNIGKYRVNPSN 72
>pdb|2W1Q|A Chain A, Unique Ligand Binding Specificity For A Family 32
Carbohydrate-Binding Module From The Mu Toxin Produced
By Clostridium Perfringens
pdb|2W1Q|B Chain B, Unique Ligand Binding Specificity For A Family 32
Carbohydrate-Binding Module From The Mu Toxin Produced
By Clostridium Perfringens
pdb|2W1U|A Chain A, A Family 32 Carbohydrate-Binding Module, From The Mu Toxin
Produced By Clostridium Perfringens, In Complex With
Beta- D-Glcnac-Beta(1,3)galnac
pdb|2W1U|B Chain B, A Family 32 Carbohydrate-Binding Module, From The Mu Toxin
Produced By Clostridium Perfringens, In Complex With
Beta- D-Glcnac-Beta(1,3)galnac
pdb|2W1U|C Chain C, A Family 32 Carbohydrate-Binding Module, From The Mu Toxin
Produced By Clostridium Perfringens, In Complex With
Beta- D-Glcnac-Beta(1,3)galnac
pdb|2W1U|D Chain D, A Family 32 Carbohydrate-Binding Module, From The Mu Toxin
Produced By Clostridium Perfringens, In Complex With
Beta- D-Glcnac-Beta(1,3)galnac
pdb|2WDB|A Chain A, A Family 32 Carbohydrate-Binding Module, From The Mu Toxin
Produced By Clostridium Perfringens, In Complex With
Beta- D-Glcnac-Beta(1,2)mannose
pdb|2WDB|B Chain B, A Family 32 Carbohydrate-Binding Module, From The Mu Toxin
Produced By Clostridium Perfringens, In Complex With
Beta- D-Glcnac-Beta(1,2)mannose
pdb|2WDB|C Chain C, A Family 32 Carbohydrate-Binding Module, From The Mu Toxin
Produced By Clostridium Perfringens, In Complex With
Beta- D-Glcnac-Beta(1,2)mannose
pdb|2WDB|D Chain D, A Family 32 Carbohydrate-Binding Module, From The Mu Toxin
Produced By Clostridium Perfringens, In Complex With
Beta- D-Glcnac-Beta(1,2)mannose
Length = 192
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 13/97 (13%)
Query: 119 KEISTDGSFLRIIVEGGGCSGFQYKFELDTQVSDED----RVYEKSGC---KVVIDQT-- 169
KEI DG I GGG S KF+L+ + +E + Y+K+G K VI+++
Sbjct: 74 KEIKLDGIRFVIGKNGGGSSDKWNKFKLEYSLDNESWTTIKEYDKTGAPAGKDVIEESFE 133
Query: 170 ---SLEYVQGSVIE-YHQELIRSAFQISNNPQVEQGN 202
S +Y++ + +E ++ L S F I ++ GN
Sbjct: 134 TPISAKYIRLTNMENINKWLTFSEFAIVSDELENAGN 170
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,225,844
Number of Sequences: 62578
Number of extensions: 235110
Number of successful extensions: 551
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 537
Number of HSP's gapped (non-prelim): 20
length of query: 237
length of database: 14,973,337
effective HSP length: 96
effective length of query: 141
effective length of database: 8,965,849
effective search space: 1264184709
effective search space used: 1264184709
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)