Query psy7477
Match_columns 237
No_of_seqs 264 out of 2135
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 19:18:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7477.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7477hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0316 sufA Fe-S cluster asse 100.0 1.5E-32 3.3E-37 211.9 12.5 105 105-210 2-110 (110)
2 PRK13623 iron-sulfur cluster i 100.0 1.2E-31 2.6E-36 209.5 12.1 107 103-210 5-115 (115)
3 PRK09502 iscA iron-sulfur clus 100.0 1.5E-31 3.3E-36 206.4 11.9 104 106-210 1-107 (107)
4 PRK09504 sufA iron-sulfur clus 100.0 3.6E-31 7.9E-36 208.8 12.0 106 104-210 14-122 (122)
5 PLN03082 Iron-sulfur cluster a 100.0 5E-31 1.1E-35 217.0 11.7 107 104-210 51-162 (163)
6 TIGR01997 sufA_proteo FeS asse 100.0 1.5E-30 3.3E-35 200.8 12.1 102 107-209 2-106 (107)
7 TIGR02011 IscA iron-sulfur clu 100.0 1.4E-30 3E-35 200.4 11.7 101 108-209 1-104 (105)
8 TIGR00049 Iron-sulfur cluster 100.0 1E-28 2.2E-33 189.5 11.6 100 109-209 1-104 (105)
9 PRK11190 Fe/S biogenesis prote 99.9 2.5E-26 5.5E-31 194.0 10.7 120 107-232 1-125 (192)
10 KOG1119|consensus 99.9 7.6E-26 1.6E-30 185.4 9.4 105 107-211 93-198 (199)
11 KOG1120|consensus 99.9 1.1E-25 2.5E-30 174.4 9.1 106 104-210 26-134 (134)
12 TIGR03341 YhgI_GntY IscR-regul 99.9 3.6E-25 7.7E-30 186.8 10.0 119 108-232 1-124 (190)
13 TIGR01911 HesB_rel_seleno HesB 99.9 1E-22 2.2E-27 153.2 9.2 86 106-192 2-91 (92)
14 COG0316 sufA Fe-S cluster asse 99.9 8.1E-23 1.7E-27 157.8 8.6 88 25-112 2-95 (110)
15 PLN03082 Iron-sulfur cluster a 99.9 9.3E-22 2E-26 162.0 7.4 89 22-110 49-144 (163)
16 PRK09504 sufA iron-sulfur clus 99.8 3.7E-21 7.9E-26 151.8 7.9 92 22-113 12-108 (122)
17 PF01521 Fe-S_biosyn: Iron-sul 99.8 6.5E-21 1.4E-25 147.5 8.6 100 106-206 1-112 (112)
18 TIGR01911 HesB_rel_seleno HesB 99.8 1E-20 2.2E-25 142.3 7.2 78 26-104 2-84 (92)
19 PRK13623 iron-sulfur cluster i 99.8 6.8E-20 1.5E-24 143.0 8.5 92 21-112 3-100 (115)
20 PRK09502 iscA iron-sulfur clus 99.8 6.7E-20 1.4E-24 141.4 8.1 87 26-112 1-92 (107)
21 KOG1120|consensus 99.8 1.3E-19 2.7E-24 140.8 7.7 99 16-114 18-122 (134)
22 TIGR01997 sufA_proteo FeS asse 99.8 1.7E-19 3.7E-24 139.1 8.1 87 26-112 1-92 (107)
23 TIGR02011 IscA iron-sulfur clu 99.8 6.1E-19 1.3E-23 135.6 8.0 85 28-112 1-90 (105)
24 PRK11190 Fe/S biogenesis prote 99.8 9.3E-19 2E-23 147.9 8.5 85 27-111 1-92 (192)
25 TIGR03341 YhgI_GntY IscR-regul 99.7 1.7E-17 3.6E-22 140.2 8.4 84 28-111 1-91 (190)
26 KOG1119|consensus 99.7 4.9E-17 1.1E-21 133.7 8.9 78 26-103 92-171 (199)
27 TIGR00049 Iron-sulfur cluster 99.7 2.7E-16 5.8E-21 120.5 7.6 83 29-111 1-89 (105)
28 COG4841 Uncharacterized protei 99.5 2.8E-14 6.1E-19 104.3 7.9 85 106-191 1-93 (95)
29 PF01521 Fe-S_biosyn: Iron-sul 99.5 2.9E-14 6.3E-19 110.2 6.1 79 26-104 1-92 (112)
30 COG4841 Uncharacterized protei 98.7 2E-08 4.3E-13 73.8 5.6 78 26-104 1-87 (95)
31 COG4918 Uncharacterized protei 98.1 4.7E-06 1E-10 62.9 5.0 77 26-104 1-86 (114)
32 COG4918 Uncharacterized protei 98.1 7.4E-06 1.6E-10 61.9 5.6 80 106-185 1-86 (114)
33 COG3564 Uncharacterized protei 95.9 0.019 4.1E-07 43.3 5.2 88 24-112 3-97 (116)
34 COG3564 Uncharacterized protei 93.8 0.5 1.1E-05 35.8 7.8 88 106-196 5-98 (116)
35 PF05610 DUF779: Protein of un 93.1 0.41 8.9E-06 36.0 6.4 76 120-198 5-86 (95)
36 COG0694 Thioredoxin-like prote 60.7 1.9 4E-05 32.5 -1.0 22 211-232 7-28 (93)
37 PF05610 DUF779: Protein of un 56.7 16 0.00034 27.6 3.4 72 38-110 3-81 (95)
38 COG4647 AcxC Acetone carboxyla 52.8 7.9 0.00017 31.0 1.3 29 194-227 64-93 (165)
39 COG1660 Predicted P-loop-conta 45.2 41 0.00089 30.3 4.7 61 35-103 148-214 (286)
40 PRK05416 glmZ(sRNA)-inactivati 39.5 64 0.0014 29.0 5.2 40 33-80 149-189 (288)
41 PF03668 ATP_bind_2: P-loop AT 38.6 51 0.0011 29.7 4.4 37 36-80 148-186 (284)
42 COG1909 Uncharacterized protei 35.9 51 0.0011 27.4 3.6 29 27-55 88-116 (167)
43 PF04019 DUF359: Protein of un 35.5 54 0.0012 25.7 3.6 71 28-123 44-116 (121)
44 cd03063 TRX_Fd_FDH_beta TRX-li 29.2 75 0.0016 23.7 3.3 25 35-60 20-44 (92)
45 cd01234 PH_CADPS CADPS (Ca2+-d 29.1 37 0.0008 26.3 1.6 19 167-185 45-63 (117)
46 COG1909 Uncharacterized protei 28.7 74 0.0016 26.5 3.4 30 106-135 87-116 (167)
47 PF14620 YPEB: YpeB sporulatio 26.4 5.3E+02 0.011 23.9 13.0 157 3-183 180-348 (361)
48 PF04019 DUF359: Protein of un 24.1 99 0.0021 24.3 3.3 30 105-134 41-70 (121)
49 PF11146 DUF2905: Protein of u 21.0 95 0.0021 21.7 2.4 17 71-87 30-46 (64)
No 1
>COG0316 sufA Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-32 Score=211.89 Aligned_cols=105 Identities=33% Similarity=0.653 Sum_probs=99.7
Q ss_pred ccceeechHHHHHHHHHhcC----CCceEEEEecCCCCcceeeEEecCCCCCCCeEEEeCCeEEEEcCCccccccCcEEE
Q psy7477 105 LKDLVIHDSCIKKLKEISTD----GSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIE 180 (237)
Q Consensus 105 ~~~i~IT~~A~~~l~~~l~~----~~~lRi~v~~~GCsG~~y~l~~~~~~~~~D~v~~~~Gi~v~id~~s~~~L~g~~ID 180 (237)
.++|++|+.|++++++++++ +.+|||+|+++||+|++|+|.+++++.++|.+++.+|++++||+.++.||+|++||
T Consensus 2 ~~~itlT~~Aa~~v~~ll~~~~~~~~~lRv~V~~gGCsG~~Y~~~~~~~~~~~D~v~e~~g~~v~vD~~S~~~L~G~~ID 81 (110)
T COG0316 2 AMMITLTDAAAARVKALLAKEGEENLGLRVGVKGGGCSGFQYGLEFDDEINEDDTVFEQDGVKVVVDPKSLPYLEGTEID 81 (110)
T ss_pred CCceeeCHHHHHHHHHHHHhccCCCceEEEEEeCCCCCCcEeEEEEcCCCCCCCEEEEeCCEEEEEChhhhhhhcCCEEE
Confidence 46899999999999999974 36899999999999999999999988999999999999999999999999999999
Q ss_pred EEecCccceeEEeeCCCCCCCCCCCCCCCC
Q psy7477 181 YHQELIRSAFQISNNPQVEQGNLTKGDHFI 210 (237)
Q Consensus 181 y~e~~~g~gF~i~~nP~~~~~CgCG~Sf~~ 210 (237)
|+++..|++|+| +|||++.+||||+||++
T Consensus 82 yv~~~~g~~F~~-~NPNA~~~CgCg~Sf~v 110 (110)
T COG0316 82 YVEDLLGSGFTF-KNPNAKSSCGCGESFSV 110 (110)
T ss_pred EEEcCcCCceEE-ECCCCCccccCCCCCCC
Confidence 999999999996 99999999999999963
No 2
>PRK13623 iron-sulfur cluster insertion protein ErpA; Provisional
Probab=99.97 E-value=1.2e-31 Score=209.46 Aligned_cols=107 Identities=36% Similarity=0.622 Sum_probs=99.5
Q ss_pred ccccceeechHHHHHHHHHhcC----CCceEEEEecCCCCcceeeEEecCCCCCCCeEEEeCCeEEEEcCCccccccCcE
Q psy7477 103 STLKDLVIHDSCIKKLKEISTD----GSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSV 178 (237)
Q Consensus 103 ~~~~~i~IT~~A~~~l~~~l~~----~~~lRi~v~~~GCsG~~y~l~~~~~~~~~D~v~~~~Gi~v~id~~s~~~L~g~~ 178 (237)
+..++|+||++|+++|+++++. ..+|||+++++||+|++|+|.+++++.++|.+++.+|++|+||+++++||+|++
T Consensus 5 ~~~~~i~iT~~A~~~i~~~~~~~~~~~~~LRi~v~~~GCsG~~y~l~l~~~~~~~D~v~e~~gv~v~id~~s~~~l~g~~ 84 (115)
T PRK13623 5 DVPLPLVFTDAAAAKVKELIEEEGNPDLKLRVYITGGGCSGFQYGFTFDEQVNEDDTTIEKQGVTLVVDPMSLQYLVGAE 84 (115)
T ss_pred ccCcceEECHHHHHHHHHHHhhCCCCceEEEEEEeCCCCCCcEEEEEECCCCCCCCEEEEcCCEEEEEcHHHHHHhCCCE
Confidence 4568899999999999999963 246999999999999999999998888999999999999999999999999999
Q ss_pred EEEEecCccceeEEeeCCCCCCCCCCCCCCCC
Q psy7477 179 IEYHQELIRSAFQISNNPQVEQGNLTKGDHFI 210 (237)
Q Consensus 179 IDy~e~~~g~gF~i~~nP~~~~~CgCG~Sf~~ 210 (237)
|||++++.+++|+| +|||++++||||+||++
T Consensus 85 IDy~~~~~~~~F~f-~NPn~~~~CgCg~SF~~ 115 (115)
T PRK13623 85 VDYTEGLEGSRFVI-KNPNAKTTCGCGSSFSI 115 (115)
T ss_pred EEeecCCCcceEEE-ECCCCCcCCCCCcCccC
Confidence 99999999999985 99999999999999963
No 3
>PRK09502 iscA iron-sulfur cluster assembly protein; Provisional
Probab=99.97 E-value=1.5e-31 Score=206.43 Aligned_cols=104 Identities=28% Similarity=0.530 Sum_probs=97.3
Q ss_pred cceeechHHHHHHHHHhcC---CCceEEEEecCCCCcceeeEEecCCCCCCCeEEEeCCeEEEEcCCccccccCcEEEEE
Q psy7477 106 KDLVIHDSCIKKLKEISTD---GSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIEYH 182 (237)
Q Consensus 106 ~~i~IT~~A~~~l~~~l~~---~~~lRi~v~~~GCsG~~y~l~~~~~~~~~D~v~~~~Gi~v~id~~s~~~L~g~~IDy~ 182 (237)
|+|+||++|+++|++++++ ..+|||+++++||+|++|.|.++++++++|.+++.+|++|+||+.++.||+|++|||+
T Consensus 1 m~i~iT~~A~~~i~~l~~~~~~~~~LRi~v~~~GCsG~~Y~l~~~~~~~~~D~~~~~~g~~v~id~~s~~~l~g~~IDy~ 80 (107)
T PRK09502 1 MSITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFV 80 (107)
T ss_pred CeEEECHHHHHHHHHHHhCcCCCceEEEEEECCCcCCeeeEeeecCCCCCCCEEEEcCCeEEEEeHHHHhHhCCCEEEEe
Confidence 4599999999999999964 2569999999999999999999878899999999999999999999999999999999
Q ss_pred ecCccceeEEeeCCCCCCCCCCCCCCCC
Q psy7477 183 QELIRSAFQISNNPQVEQGNLTKGDHFI 210 (237)
Q Consensus 183 e~~~g~gF~i~~nP~~~~~CgCG~Sf~~ 210 (237)
+++.+++|+| +|||++++||||+||++
T Consensus 81 ~~~~~~~F~f-~NPna~~~CgCG~Sf~~ 107 (107)
T PRK09502 81 KEGLNEGFKF-TNPNVKDECGCGESFHV 107 (107)
T ss_pred eCCCCceEEE-ECCCCCCccCCCCCeeC
Confidence 9999999996 99999999999999963
No 4
>PRK09504 sufA iron-sulfur cluster assembly scaffold protein; Provisional
Probab=99.97 E-value=3.6e-31 Score=208.84 Aligned_cols=106 Identities=19% Similarity=0.437 Sum_probs=99.7
Q ss_pred cccceeechHHHHHHHHHhcC---CCceEEEEecCCCCcceeeEEecCCCCCCCeEEEeCCeEEEEcCCccccccCcEEE
Q psy7477 104 TLKDLVIHDSCIKKLKEISTD---GSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIE 180 (237)
Q Consensus 104 ~~~~i~IT~~A~~~l~~~l~~---~~~lRi~v~~~GCsG~~y~l~~~~~~~~~D~v~~~~Gi~v~id~~s~~~L~g~~ID 180 (237)
.+++|+||++|+++|++++++ ..+|||+++++||+|++|.|.+++++.++|.+++.+|++|+||+.++.||+|++||
T Consensus 14 ~~~~I~iT~~A~~~i~~l~~~~~~~~~LRi~v~~gGCsG~~Y~~~l~~e~~~~D~v~e~~g~~v~Id~~s~~~L~g~~ID 93 (122)
T PRK09504 14 AWQGLTLTPAAAAHIRELMAKQPGMKGVRLGVKQTGCAGFGYVLDSVSEPDKDDLVFEHDGAKLFVPLQAMPFIDGTEVD 93 (122)
T ss_pred CcCCEEECHHHHHHHHHHHhcCCCCceEEEEEECCCCCceEEEeeecCCCCCCCEEEEeCCEEEEEcHHHHHhhCCcEEE
Confidence 468999999999999999964 25799999999999999999999888999999999999999999999999999999
Q ss_pred EEecCccceeEEeeCCCCCCCCCCCCCCCC
Q psy7477 181 YHQELIRSAFQISNNPQVEQGNLTKGDHFI 210 (237)
Q Consensus 181 y~e~~~g~gF~i~~nP~~~~~CgCG~Sf~~ 210 (237)
|++++.++||+| +|||++++||||+||++
T Consensus 94 y~~~~~~~gF~f-~NPna~~~CgCG~SF~v 122 (122)
T PRK09504 94 YVREGLNQIFKF-HNPKAQNECGCGESFGV 122 (122)
T ss_pred eecCCCcceEEE-ECCCCCCCcCCCCCeeC
Confidence 999999999985 99999999999999963
No 5
>PLN03082 Iron-sulfur cluster assembly; Provisional
Probab=99.97 E-value=5e-31 Score=216.99 Aligned_cols=107 Identities=46% Similarity=0.867 Sum_probs=99.5
Q ss_pred cccceeechHHHHHHHHHhcC-----CCceEEEEecCCCCcceeeEEecCCCCCCCeEEEeCCeEEEEcCCccccccCcE
Q psy7477 104 TLKDLVIHDSCIKKLKEISTD-----GSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSV 178 (237)
Q Consensus 104 ~~~~i~IT~~A~~~l~~~l~~-----~~~lRi~v~~~GCsG~~y~l~~~~~~~~~D~v~~~~Gi~v~id~~s~~~L~g~~ 178 (237)
..+.|+||++|+++|++++++ ..+|||+|+++||+|++|.|.++++++++|.+++.+|++|+||+.++.||+|++
T Consensus 51 ~~~~I~lTd~A~~~ik~l~~~~~~~~~~~LRl~V~~gGCSG~~Y~~~ld~~~~~~D~v~e~~Gv~vvVD~~s~~~L~Gs~ 130 (163)
T PLN03082 51 SLDAVHMTDNCIRRLKELQTSEPSAEDKMLRLSVETGGCSGFQYVFELDDKTNSDDRVFEKDGVKLVVDNISYDFVKGAT 130 (163)
T ss_pred cCCceEECHHHHHHHHHHHHhCCCCCCceEEEEEecCCCCCceeeeEEccCCCCCCEEEecCCeEEEECHHHHHHhCCCE
Confidence 346799999999999999864 247999999999999999999998888999999999999999999999999999
Q ss_pred EEEEecCccceeEEeeCCCCCCCCCCCCCCCC
Q psy7477 179 IEYHQELIRSAFQISNNPQVEQGNLTKGDHFI 210 (237)
Q Consensus 179 IDy~e~~~g~gF~i~~nP~~~~~CgCG~Sf~~ 210 (237)
|||++++.++||+|++|||++++||||+||++
T Consensus 131 IDYve~l~~~gF~f~~NPna~~~CgCG~SF~v 162 (163)
T PLN03082 131 VDYVEELIRSAFVVSTNPSAVGGCSCKSSFMV 162 (163)
T ss_pred EEeecCCCCCeeEEecCCCCCCCcCCCCCEeC
Confidence 99999999999995499999999999999975
No 6
>TIGR01997 sufA_proteo FeS assembly scaffold SufA. This model represents the SufA protein of the SUF system of iron-sulfur cluster biosynthesis. This system performs FeS biosynthesis even during oxidative stress and tends to be absent in obligate anaerobic and microaerophilic bacteria.
Probab=99.97 E-value=1.5e-30 Score=200.84 Aligned_cols=102 Identities=20% Similarity=0.451 Sum_probs=96.7
Q ss_pred ceeechHHHHHHHHHhcC---CCceEEEEecCCCCcceeeEEecCCCCCCCeEEEeCCeEEEEcCCccccccCcEEEEEe
Q psy7477 107 DLVIHDSCIKKLKEISTD---GSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIEYHQ 183 (237)
Q Consensus 107 ~i~IT~~A~~~l~~~l~~---~~~lRi~v~~~GCsG~~y~l~~~~~~~~~D~v~~~~Gi~v~id~~s~~~L~g~~IDy~e 183 (237)
+|+||++|+++|++++++ ..+|||+++++||+|++|.|.++++++++|.+++.+|++|+||+.++.||+|++|||++
T Consensus 2 ~i~iT~~A~~~i~~l~~~~~~~~~lRi~v~~~GC~G~~y~~~l~~~~~~~D~v~~~~g~~v~id~~s~~~l~g~~IDy~~ 81 (107)
T TIGR01997 2 VITLTDAAAIHIRELVAKRPEAVGIRLGVKKTGCAGMEYVLDLVSEPKKDDDLIEHDGAKVFVAPEAVLFILGTQVDFVR 81 (107)
T ss_pred eEEECHHHHHHHHHHHhcCCCCcEEEEEEECCCCCCcEEEeeecCCCCCCCEEEecCCEEEEEcHHHHhhhCCCEEEEEE
Confidence 689999999999999964 35799999999999999999998888999999999999999999999999999999999
Q ss_pred cCccceeEEeeCCCCCCCCCCCCCCC
Q psy7477 184 ELIRSAFQISNNPQVEQGNLTKGDHF 209 (237)
Q Consensus 184 ~~~g~gF~i~~nP~~~~~CgCG~Sf~ 209 (237)
++.+++|+| +|||++++||||+||+
T Consensus 82 ~~~~~~F~~-~NPn~~~~CgCG~Sf~ 106 (107)
T TIGR01997 82 TTLRQGFKF-NNPNATSACGCGESFE 106 (107)
T ss_pred cCCcceEEE-ECCCCCCccCCCCCcc
Confidence 999999996 9999999999999995
No 7
>TIGR02011 IscA iron-sulfur cluster assembly protein IscA. This clade is limited to the proteobacteria.
Probab=99.97 E-value=1.4e-30 Score=200.38 Aligned_cols=101 Identities=29% Similarity=0.549 Sum_probs=95.6
Q ss_pred eeechHHHHHHHHHhcC---CCceEEEEecCCCCcceeeEEecCCCCCCCeEEEeCCeEEEEcCCccccccCcEEEEEec
Q psy7477 108 LVIHDSCIKKLKEISTD---GSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIEYHQE 184 (237)
Q Consensus 108 i~IT~~A~~~l~~~l~~---~~~lRi~v~~~GCsG~~y~l~~~~~~~~~D~v~~~~Gi~v~id~~s~~~L~g~~IDy~e~ 184 (237)
|+||++|+++|++++++ ..+|||+++++||+|++|.|.++++++++|.+++.+|++|+||+.++.||+|++|||+++
T Consensus 1 I~iT~~A~~~i~~~~~~~~~~~~lRi~v~~~GCsG~~y~l~l~~~~~~~D~v~~~~g~~v~id~~s~~~l~g~~IDy~~~ 80 (105)
T TIGR02011 1 ITLTDSAAARVNTFLANRGKGFGLRLGVKTSGCSGMAYVLEFVDEPTPDDIVFEDKGVKIVIDGKSLQYLDGTQLDFVKE 80 (105)
T ss_pred CEECHHHHHHHHHHHhccCCCceEEEEEeCCCCCCEEEEeeecCCCCCCCEEEEcCCEEEEEcHHHhHHhCCCEEEEecC
Confidence 68999999999999974 257999999999999999999988889999999999999999999999999999999999
Q ss_pred CccceeEEeeCCCCCCCCCCCCCCC
Q psy7477 185 LIRSAFQISNNPQVEQGNLTKGDHF 209 (237)
Q Consensus 185 ~~g~gF~i~~nP~~~~~CgCG~Sf~ 209 (237)
+.+++|+| +|||++++||||+||+
T Consensus 81 ~~~~~F~~-~nPna~~~CgCg~Sf~ 104 (105)
T TIGR02011 81 GLNEGFKF-TNPNVKDECGCGESFH 104 (105)
T ss_pred CCcceEEE-ECCCCCccCCCCCCcc
Confidence 99999996 9999999999999996
No 8
>TIGR00049 Iron-sulfur cluster assembly accessory protein. Proteins in this subfamily appear to be associated with the process of FeS-cluster assembly. The HesB proteins are associated with the nif gene cluster and the Rhizobium gene IscN has been shown to be required for nitrogen fixation. Nitrogenase includes multiple FeS clusters and many genes for their assembly. The E. coli SufA protein is associated with SufS, a NifS homolog and SufD which are involved in the FeS cluster assembly of the FhnF protein. The Azotobacter protein IscA (homologs of which are also found in E.coli) is associated which IscS, another NifS homolog and IscU, a nifU homolog as well as other factors consistent with a role in FeS cluster chemistry. A homolog from Geobacter contains a selenocysteine in place of an otherwise invariant cysteine, further suggesting a role in redox chemistry.
Probab=99.96 E-value=1e-28 Score=189.54 Aligned_cols=100 Identities=38% Similarity=0.659 Sum_probs=94.6
Q ss_pred eechHHHHHHHHHhcCC----CceEEEEecCCCCcceeeEEecCCCCCCCeEEEeCCeEEEEcCCccccccCcEEEEEec
Q psy7477 109 VIHDSCIKKLKEISTDG----SFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIEYHQE 184 (237)
Q Consensus 109 ~IT~~A~~~l~~~l~~~----~~lRi~v~~~GCsG~~y~l~~~~~~~~~D~v~~~~Gi~v~id~~s~~~L~g~~IDy~e~ 184 (237)
+||++|+++|+++++.+ .+|||+++.+||+|++|+|.++++++++|.+++.+|++|+||+++++||+|++|||+++
T Consensus 1 ~iT~~A~~~l~~~~~~~~~~~~~lRi~~~~~Gc~G~~~~l~l~~~~~~~D~~~~~~gi~~~id~~~~~~l~~~~IDy~~~ 80 (105)
T TIGR00049 1 TLTDSAAKRIKALLAGEGEPNLGLRVGVKGGGCSGLQYGLEFDDEPNEDDEVFEQDGVKVVVDPKSLPYLDGSEIDYVEE 80 (105)
T ss_pred CcCHHHHHHHHHHHhcCCCCceEEEEEEecCCCCCeEEEEeecCCCCCCCEEEEcCCEEEEEeHHHHhhhCCCEEEEeec
Confidence 58999999999999742 58999999999999999999998788999999999999999999999999999999999
Q ss_pred CccceeEEeeCCCCCCCCCCCCCCC
Q psy7477 185 LIRSAFQISNNPQVEQGNLTKGDHF 209 (237)
Q Consensus 185 ~~g~gF~i~~nP~~~~~CgCG~Sf~ 209 (237)
..+++|+| +|||++++||||+||+
T Consensus 81 ~~~~~f~i-~nPn~~~~c~cg~sf~ 104 (105)
T TIGR00049 81 LLGSGFTF-TNPNAKGTCGCGKSFS 104 (105)
T ss_pred CCcceEEE-ECCCCCccCCCCcCcc
Confidence 99999996 9999999999999996
No 9
>PRK11190 Fe/S biogenesis protein NfuA; Provisional
Probab=99.93 E-value=2.5e-26 Score=193.96 Aligned_cols=120 Identities=15% Similarity=0.287 Sum_probs=106.8
Q ss_pred ceeechHHHHHHHHHhcC---CCceEEEEecCCCCcceeeEEe--cCCCCCCCeEEEeCCeEEEEcCCccccccCcEEEE
Q psy7477 107 DLVIHDSCIKKLKEISTD---GSFLRIIVEGGGCSGFQYKFEL--DTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIEY 181 (237)
Q Consensus 107 ~i~IT~~A~~~l~~~l~~---~~~lRi~v~~~GCsG~~y~l~~--~~~~~~~D~v~~~~Gi~v~id~~s~~~L~g~~IDy 181 (237)
||+||++|+++|++++++ +.+|||+|+++||+|++|+|.+ ++++.++|.+++.+|++|+||+.++.||+|++|||
T Consensus 1 ~i~iTd~A~~~i~~ll~~~~~~~~LRI~V~~gGCsG~~Y~~~~~~~~~~~~~D~v~e~~gv~v~Vd~~S~~~L~G~~IDy 80 (192)
T PRK11190 1 MITISDAAQAHFAKLLANQEEGTQIRVFVINPGTPNAECGVSYCPPDAVEATDTELKFDGFSAYVDELSAPFLEDAEIDF 80 (192)
T ss_pred CcEECHHHHHHHHHHHhcCCCCceEEEEEECCCcCCceeeeEEeecCCCCCCCEEEEeCCEEEEECcchHhHhCCCEEEE
Confidence 689999999999999964 2579999999999999999999 67778999999999999999999999999999999
Q ss_pred EecCccceeEEeeCCCCCCCCCCCCCCCCCCCchhcccccceeeeCCCCcc
Q psy7477 182 HQELIRSAFQISNNPQVEQGNLTKGDHFISPSNITRIRPRLSYRISPGIDS 232 (237)
Q Consensus 182 ~e~~~g~gF~i~~nP~~~~~CgCG~Sf~~~~~~~~~~~~~~~~~i~p~~~~ 232 (237)
++++.+++|+| +|||+++ .-....+++.++++++|+.+|+|.|.+
T Consensus 81 ve~~~g~gF~f-~NPNa~~-----~~~~~~~~~~~~i~~~l~~~irP~l~~ 125 (192)
T PRK11190 81 VTDQLGSQLTL-KAPNAKM-----RKVADDAPLMERVEYVLQSQINPQLAG 125 (192)
T ss_pred eecCCCCceEE-ECCCCCC-----CCCcccHHHHHHHHHHHHhccChhHHh
Confidence 99999999996 9999986 101123458999999999999999875
No 10
>KOG1119|consensus
Probab=99.93 E-value=7.6e-26 Score=185.41 Aligned_cols=105 Identities=49% Similarity=0.904 Sum_probs=100.8
Q ss_pred ceeechHHHHHHHHHhcCC-CceEEEEecCCCCcceeeEEecCCCCCCCeEEEeCCeEEEEcCCccccccCcEEEEEecC
Q psy7477 107 DLVIHDSCIKKLKEISTDG-SFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIEYHQEL 185 (237)
Q Consensus 107 ~i~IT~~A~~~l~~~l~~~-~~lRi~v~~~GCsG~~y~l~~~~~~~~~D~v~~~~Gi~v~id~~s~~~L~g~~IDy~e~~ 185 (237)
.+.++++|.++++++..++ ..||+.|++|||+||+|.|.+|....++|.++..+|.+|+||..++.+++|++|||.+++
T Consensus 93 ~~~lsds~~krl~EI~~~~pe~LRl~VegGGCsGFQYkf~LD~~in~dD~vf~e~~arVVvD~~SL~~~kGatvdy~~EL 172 (199)
T KOG1119|consen 93 NLHLSDSCSKRLKEIYENSPEFLRLTVEGGGCSGFQYKFRLDNKINNDDRVFVENGARVVVDNVSLNLLKGATVDYTNEL 172 (199)
T ss_pred eEEehhHHHHHHHHHHhCCcceEEEEEecCCccceEEEEEecCCCCCcceEEeeCCcEEEEeccchhhccCceeehHHHH
Confidence 4889999999999999987 899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeEEeeCCCCCCCCCCCCCCCCC
Q psy7477 186 IRSAFQISNNPQVEQGNLTKGDHFIS 211 (237)
Q Consensus 186 ~g~gF~i~~nP~~~~~CgCG~Sf~~~ 211 (237)
.++.|+++.||.++.+||||+||.++
T Consensus 173 IrSsF~ivnNP~A~~gCsCgSSF~ik 198 (199)
T KOG1119|consen 173 IRSSFRIVNNPSAKQGCSCGSSFDIK 198 (199)
T ss_pred hhhhheeecCcccccCCCCCcccccC
Confidence 99999999999999999999999653
No 11
>KOG1120|consensus
Probab=99.93 E-value=1.1e-25 Score=174.43 Aligned_cols=106 Identities=24% Similarity=0.432 Sum_probs=99.9
Q ss_pred cccceeechHHHHHHHHHhcC---CCceEEEEecCCCCcceeeEEecCCCCCCCeEEEeCCeEEEEcCCccccccCcEEE
Q psy7477 104 TLKDLVIHDSCIKKLKEISTD---GSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIE 180 (237)
Q Consensus 104 ~~~~i~IT~~A~~~l~~~l~~---~~~lRi~v~~~GCsG~~y~l~~~~~~~~~D~v~~~~Gi~v~id~~s~~~L~g~~ID 180 (237)
.+.-|++||+|+++|+.++++ ...|||.|+..||+|++|.|.+.+++...|++++.+|++|+||+++...+-|+++|
T Consensus 26 ~k~~ltLTp~Av~~ik~ll~~~~e~~~lrigVk~rGCnGlsYtleY~~~kgkfDE~VeqdGv~I~ie~KA~l~liGteMD 105 (134)
T KOG1120|consen 26 RKAALTLTPSAVNHIKQLLSDKPEDVCLRIGVKQRGCNGLSYTLEYTKTKGKFDEVVEQDGVRIFIEPKALLTLIGTEMD 105 (134)
T ss_pred cccccccCHHHHHHHHHHHHhCCcCceeEEEEecCCcCcceeeeeeeccCCCCcceeeecCcEEEEcccceeeeccceeh
Confidence 456899999999999999983 48899999999999999999999888899999999999999999999999999999
Q ss_pred EEecCccceeEEeeCCCCCCCCCCCCCCCC
Q psy7477 181 YHQELIRSAFQISNNPQVEQGNLTKGDHFI 210 (237)
Q Consensus 181 y~e~~~g~gF~i~~nP~~~~~CgCG~Sf~~ 210 (237)
|+++..+++|+| .|||+++.||||.||++
T Consensus 106 yvddkL~Sefvf-~npna~gtcGcgeSf~~ 134 (134)
T KOG1120|consen 106 YVDDKLSSEFVF-SNPNAKGTCGCGESFSV 134 (134)
T ss_pred hhhhhhcCceEe-eCCCccccccccccccC
Confidence 999999999995 99999999999999963
No 12
>TIGR03341 YhgI_GntY IscR-regulated protein YhgI. IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization.
Probab=99.92 E-value=3.6e-25 Score=186.84 Aligned_cols=119 Identities=18% Similarity=0.260 Sum_probs=105.6
Q ss_pred eeechHHHHHHHHHhcC---CCceEEEEecCCCCcceeeEEe--cCCCCCCCeEEEeCCeEEEEcCCccccccCcEEEEE
Q psy7477 108 LVIHDSCIKKLKEISTD---GSFLRIIVEGGGCSGFQYKFEL--DTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIEYH 182 (237)
Q Consensus 108 i~IT~~A~~~l~~~l~~---~~~lRi~v~~~GCsG~~y~l~~--~~~~~~~D~v~~~~Gi~v~id~~s~~~L~g~~IDy~ 182 (237)
|+||++|+++|++++++ +.+|||+|+++||+|++|+|.+ +++++++|.+++.+|++|+||+.++.||+|++|||+
T Consensus 1 I~IT~~A~~~l~~ll~~~~~~~~LRv~V~~gGCsG~~Y~l~~~~~~~~~~~D~v~e~~g~~v~Vd~~s~~~L~g~~IDyv 80 (190)
T TIGR03341 1 ITITEAAQAYLAKLLAKQNEGTGIRVFVVNPGTPYAECCVSYCPPDEVEPSDIKLEFNGFSAYVDALSAPFLEDAVIDFV 80 (190)
T ss_pred CEECHHHHHHHHHHHhhCCCCceEEEEEECCccCCceeeeEEcccCCCCCCCEEEEeCCEEEEEccchhhHhCCCEEEEe
Confidence 57999999999999974 2579999999999999999999 566789999999999999999999999999999999
Q ss_pred ecCccceeEEeeCCCCCCCCCCCCCCCCCCCchhcccccceeeeCCCCcc
Q psy7477 183 QELIRSAFQISNNPQVEQGNLTKGDHFISPSNITRIRPRLSYRISPGIDS 232 (237)
Q Consensus 183 e~~~g~gF~i~~nP~~~~~CgCG~Sf~~~~~~~~~~~~~~~~~i~p~~~~ 232 (237)
+++.+++|+| +|||++.. .....+++.++++++|+.+|+|.|.+
T Consensus 81 e~~~g~gF~f-~NPna~~~-----~~~~~~~~~~~i~~~l~~~irP~l~~ 124 (190)
T TIGR03341 81 TDRMGGQLTL-KAPNAKMP-----KVADDAPLEERINYVLQSEINPQLAS 124 (190)
T ss_pred ecCCCceeEE-eCCccCCC-----cCccchHHHHHHHHHHHhccCHHHHh
Confidence 9999999996 99999752 21123458999999999999999875
No 13
>TIGR01911 HesB_rel_seleno HesB-like selenoprotein. This model represents a family of small proteins related to HesB and its close homologs, which are likely to be invovlved in iron-sulfur cluster assembly (See TIGR00049 and pfam01521). Several members are selenoproteins, with a TGA codon and Sec residue that aligns to the conserved Cys of the HesB domain. A variable Cys/Ser/Gly-rich C-terminal region is not included in the seed alignment and model.
Probab=99.88 E-value=1e-22 Score=153.17 Aligned_cols=86 Identities=21% Similarity=0.405 Sum_probs=80.2
Q ss_pred cceeechHHHHHHHHHhcC-C---CceEEEEecCCCCcceeeEEecCCCCCCCeEEEeCCeEEEEcCCccccccCcEEEE
Q psy7477 106 KDLVIHDSCIKKLKEISTD-G---SFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIEY 181 (237)
Q Consensus 106 ~~i~IT~~A~~~l~~~l~~-~---~~lRi~v~~~GCsG~~y~l~~~~~~~~~D~v~~~~Gi~v~id~~s~~~L~g~~IDy 181 (237)
.||+||++|+++|++++++ + .+|||+|+++||+|++|+|.+++. +++|.+++.+|++|+||+.++.||+|++|||
T Consensus 2 ~~i~lT~~A~~~i~~ll~~~~~~~~~LRi~v~~gGCsG~~Y~~~ld~~-~~~D~v~~~~gv~v~vD~~s~~~l~G~~iDy 80 (92)
T TIGR01911 2 KIVAMSDDAYEEFKDFLKENDIDNDVIRIHFAGMGCMGPMFNLIADEE-KEGDEIEKIHDLTFLIDKNLIDQFGGFSIEC 80 (92)
T ss_pred CceEECHHHHHHHHHHHHhCCCCCceEEEEEeCCCccCcccceEecCC-CCCCEEEEeCCEEEEECHHHHHHhCCCEEEE
Confidence 5899999999999999964 2 459999999999999999999874 8999999999999999999999999999999
Q ss_pred EecCccceeEE
Q psy7477 182 HQELIRSAFQI 192 (237)
Q Consensus 182 ~e~~~g~gF~i 192 (237)
++++.++||+|
T Consensus 81 ~~~~~g~gF~~ 91 (92)
T TIGR01911 81 AEENFGAGFSL 91 (92)
T ss_pred ecCCCCCcEEe
Confidence 99999999985
No 14
>COG0316 sufA Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=8.1e-23 Score=157.84 Aligned_cols=88 Identities=25% Similarity=0.467 Sum_probs=80.3
Q ss_pred CcceeeCHHHHHHHHHHhhC----CCcEEEEEecCCCCceeEEEeecCCCCCCCeEEEeCCeEeee-cCccccCCCCCCC
Q psy7477 25 LKDLVIHDSCIKKLKEISTD----GSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKIPT-LSPYSTSSPSEKP 99 (237)
Q Consensus 25 ~~~itlT~~A~~~i~~l~~~----~~~lRi~v~~gGCsG~~Y~l~~~~~~~~~D~~~~~~g~~v~i-~~s~~~l~g~~ID 99 (237)
+++|+|||+|++|+++++++ +.+|||+|++|||+||+|.|+|++++.++|.+++.+|++|+| ++|++||.|++||
T Consensus 2 ~~~itlT~~Aa~~v~~ll~~~~~~~~~lRv~V~~gGCsG~~Y~~~~~~~~~~~D~v~e~~g~~v~vD~~S~~~L~G~~ID 81 (110)
T COG0316 2 AMMITLTDAAAARVKALLAKEGEENLGLRVGVKGGGCSGFQYGLEFDDEINEDDTVFEQDGVKVVVDPKSLPYLEGTEID 81 (110)
T ss_pred CCceeeCHHHHHHHHHHHHhccCCCceEEEEEeCCCCCCcEeEEEEcCCCCCCCEEEEeCCEEEEEChhhhhhhcCCEEE
Confidence 57899999999999999986 347999999999999999999999999999999999999999 5999999999999
Q ss_pred Ccccc-ccceeech
Q psy7477 100 VSAST-LKDLVIHD 112 (237)
Q Consensus 100 y~~~~-~~~i~IT~ 112 (237)
|+++. ...++|..
T Consensus 82 yv~~~~g~~F~~~N 95 (110)
T COG0316 82 YVEDLLGSGFTFKN 95 (110)
T ss_pred EEEcCcCCceEEEC
Confidence 99986 46676653
No 15
>PLN03082 Iron-sulfur cluster assembly; Provisional
Probab=99.85 E-value=9.3e-22 Score=162.03 Aligned_cols=89 Identities=37% Similarity=0.673 Sum_probs=78.9
Q ss_pred CCCCcceeeCHHHHHHHHHHhhCC-----CcEEEEEecCCCCceeEEEeecCCCCCCCeEEEeCCeEeeec-CccccCCC
Q psy7477 22 ASTLKDLVIHDSCIKKLKEISTDG-----SFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKIPTL-SPYSTSSP 95 (237)
Q Consensus 22 ~~~~~~itlT~~A~~~i~~l~~~~-----~~lRi~v~~gGCsG~~Y~l~~~~~~~~~D~~~~~~g~~v~i~-~s~~~l~g 95 (237)
.+..+.|+|||+|+++|+++++++ .+|||+|++|||+||+|.|.|+++++++|.+++.+|++|+|+ .+++||.|
T Consensus 49 ~~~~~~I~lTd~A~~~ik~l~~~~~~~~~~~LRl~V~~gGCSG~~Y~~~ld~~~~~~D~v~e~~Gv~vvVD~~s~~~L~G 128 (163)
T PLN03082 49 SASLDAVHMTDNCIRRLKELQTSEPSAEDKMLRLSVETGGCSGFQYVFELDDKTNSDDRVFEKDGVKLVVDNISYDFVKG 128 (163)
T ss_pred cccCCceEECHHHHHHHHHHHHhCCCCCCceEEEEEecCCCCCceeeeEEccCCCCCCEEEecCCeEEEECHHHHHHhCC
Confidence 344567999999999999999751 479999999999999999999998889999999999999995 99999999
Q ss_pred CCCCCcccc-ccceee
Q psy7477 96 SEKPVSAST-LKDLVI 110 (237)
Q Consensus 96 ~~IDy~~~~-~~~i~I 110 (237)
++|||.++. ...|.+
T Consensus 129 s~IDYve~l~~~gF~f 144 (163)
T PLN03082 129 ATVDYVEELIRSAFVV 144 (163)
T ss_pred CEEEeecCCCCCeeEE
Confidence 999999875 456766
No 16
>PRK09504 sufA iron-sulfur cluster assembly scaffold protein; Provisional
Probab=99.84 E-value=3.7e-21 Score=151.84 Aligned_cols=92 Identities=18% Similarity=0.315 Sum_probs=81.7
Q ss_pred CCCCcceeeCHHHHHHHHHHhhC---CCcEEEEEecCCCCceeEEEeecCCCCCCCeEEEeCCeEeee-cCccccCCCCC
Q psy7477 22 ASTLKDLVIHDSCIKKLKEISTD---GSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKIPT-LSPYSTSSPSE 97 (237)
Q Consensus 22 ~~~~~~itlT~~A~~~i~~l~~~---~~~lRi~v~~gGCsG~~Y~l~~~~~~~~~D~~~~~~g~~v~i-~~s~~~l~g~~ 97 (237)
...|++|+|||+|+++|++++++ ..+|||.|+++||+|++|.|.+++++.++|.+++.+|++|+| +.++.||+|++
T Consensus 12 ~~~~~~I~iT~~A~~~i~~l~~~~~~~~~LRi~v~~gGCsG~~Y~~~l~~e~~~~D~v~e~~g~~v~Id~~s~~~L~g~~ 91 (122)
T PRK09504 12 DFAWQGLTLTPAAAAHIRELMAKQPGMKGVRLGVKQTGCAGFGYVLDSVSEPDKDDLVFEHDGAKLFVPLQAMPFIDGTE 91 (122)
T ss_pred cCCcCCEEECHHHHHHHHHHHhcCCCCceEEEEEECCCCCceEEEeeecCCCCCCCEEEEeCCEEEEEcHHHHHhhCCcE
Confidence 56778999999999999999975 247999999999999999999999999999999999999999 49999999999
Q ss_pred CCCcccc-ccceeechH
Q psy7477 98 KPVSAST-LKDLVIHDS 113 (237)
Q Consensus 98 IDy~~~~-~~~i~IT~~ 113 (237)
|||.++. ...+.+...
T Consensus 92 IDy~~~~~~~gF~f~NP 108 (122)
T PRK09504 92 VDYVREGLNQIFKFHNP 108 (122)
T ss_pred EEeecCCCcceEEEECC
Confidence 9999874 456666543
No 17
>PF01521 Fe-S_biosyn: Iron-sulphur cluster biosynthesis; InterPro: IPR000361 The proteins in this entry are variously annotated as iron-sulphur cluster insertion protein or Fe/S biogenesis protein. They appear to be involved in Fe-S cluster biogenesis. This family includes IscA, HesB, YadR and YfhF-like proteins. The hesB gene is expressed only under nitrogen fixation conditions []. IscA, an 11 kDa member of the hesB family of proteins, binds iron and [2Fe-2S] clusters, and participates in the biosynthesis of iron-sulphur proteins. IscA is able to bind at least 2 iron ions per dimer []. Other members of this family include various hypothetical proteins that also contain the NifU-like domain (IPR001075 from INTERPRO) suggesting that they too are able to bind iron and are involved in Fe-S cluster biogenesis. The HesB family are found in species as divergent as Homo sapiens (Human) and Haemophilus influenzae suggesting that these proteins are involved in basic cellular functions []. ; PDB: 2D2A_A 1X0G_D 1NWB_A 2K4Z_A 1R94_B 1R95_A 1S98_B 2P2E_A 2QGO_A 2APN_A.
Probab=99.84 E-value=6.5e-21 Score=147.54 Aligned_cols=100 Identities=30% Similarity=0.563 Sum_probs=92.2
Q ss_pred cceeechHHHHHHHHHhcCCCc-eEEEEecCC--------CC-cceeeEEecCCC-CCCCeEEEeCCeEEEEcCCccccc
Q psy7477 106 KDLVIHDSCIKKLKEISTDGSF-LRIIVEGGG--------CS-GFQYKFELDTQV-SDEDRVYEKSGCKVVIDQTSLEYV 174 (237)
Q Consensus 106 ~~i~IT~~A~~~l~~~l~~~~~-lRi~v~~~G--------Cs-G~~y~l~~~~~~-~~~D~v~~~~Gi~v~id~~s~~~L 174 (237)
|.|+||++|+++|++++++... |||+++.+| |+ |++|.|.+++++ .+.|.+++.+|++|+|++.+++||
T Consensus 1 M~I~iT~~A~~~l~~~~~~~~~~irl~~~~gg~p~~~~~~C~~g~~y~l~~~~~~~~~~D~~~~~~~~~i~i~~~~~~~l 80 (112)
T PF01521_consen 1 MKITITDAAAERLKQLLKEDPKKIRLFVDDGGSPYSREGCCSIGFSYSLALVDKPDEEYDIVIESNGFTIYIDKYSLWYL 80 (112)
T ss_dssp -EEEE-HHHHHHHHHHHHCTTESEEEEEEEESSCCGGSS-TTSEEEEEEEEESSTSTTSCEEEEETTEEEEEEGGGHHHH
T ss_pred CEEEECHHHHHHHHHHHhcCCCEEEEEEECCCcccccCCCCCCCcEEeEEEeecccccceEEEeeeEEEEEEeccHhhhh
Confidence 5799999999999999997655 999999988 99 999999999877 799999999999999999999999
Q ss_pred -cCcEEEEEecCccceeEEeeCCCCCCCCCCCC
Q psy7477 175 -QGSVIEYHQELIRSAFQISNNPQVEQGNLTKG 206 (237)
Q Consensus 175 -~g~~IDy~e~~~g~gF~i~~nP~~~~~CgCG~ 206 (237)
++++|||.++..+.+|++ +||+..+.|+||+
T Consensus 81 ~~~~~iD~~~~~~~~~f~~-~~~~~~~~~~~~~ 112 (112)
T PF01521_consen 81 DEGLTIDYVEDLGGFGFKS-DNPNLDSNCGCGD 112 (112)
T ss_dssp -TTEEEEEEEETTEEEEEE-ETTTEEEEECECE
T ss_pred hCCCEEEEEEccCccEEEE-CCCCcCceeccCC
Confidence 999999999999999995 9999999999984
No 18
>TIGR01911 HesB_rel_seleno HesB-like selenoprotein. This model represents a family of small proteins related to HesB and its close homologs, which are likely to be invovlved in iron-sulfur cluster assembly (See TIGR00049 and pfam01521). Several members are selenoproteins, with a TGA codon and Sec residue that aligns to the conserved Cys of the HesB domain. A variable Cys/Ser/Gly-rich C-terminal region is not included in the seed alignment and model.
Probab=99.83 E-value=1e-20 Score=142.27 Aligned_cols=78 Identities=14% Similarity=0.221 Sum_probs=71.4
Q ss_pred cceeeCHHHHHHHHHHhhCC----CcEEEEEecCCCCceeEEEeecCCCCCCCeEEEeCCeEeee-cCccccCCCCCCCC
Q psy7477 26 KDLVIHDSCIKKLKEISTDG----SFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKIPT-LSPYSTSSPSEKPV 100 (237)
Q Consensus 26 ~~itlT~~A~~~i~~l~~~~----~~lRi~v~~gGCsG~~Y~l~~~~~~~~~D~~~~~~g~~v~i-~~s~~~l~g~~IDy 100 (237)
.||+|||+|+++|+++++++ .+|||+|+++||||++|.|.+++ ++++|.+++.+|++|+| +.+++||.|++|||
T Consensus 2 ~~i~lT~~A~~~i~~ll~~~~~~~~~LRi~v~~gGCsG~~Y~~~ld~-~~~~D~v~~~~gv~v~vD~~s~~~l~G~~iDy 80 (92)
T TIGR01911 2 KIVAMSDDAYEEFKDFLKENDIDNDVIRIHFAGMGCMGPMFNLIADE-EKEGDEIEKIHDLTFLIDKNLIDQFGGFSIEC 80 (92)
T ss_pred CceEECHHHHHHHHHHHHhCCCCCceEEEEEeCCCccCcccceEecC-CCCCCEEEEeCCEEEEECHHHHHHhCCCEEEE
Confidence 47999999999999999752 35999999999999999999987 48999999999999999 59999999999999
Q ss_pred cccc
Q psy7477 101 SAST 104 (237)
Q Consensus 101 ~~~~ 104 (237)
+++.
T Consensus 81 ~~~~ 84 (92)
T TIGR01911 81 AEEN 84 (92)
T ss_pred ecCC
Confidence 8874
No 19
>PRK13623 iron-sulfur cluster insertion protein ErpA; Provisional
Probab=99.81 E-value=6.8e-20 Score=143.05 Aligned_cols=92 Identities=32% Similarity=0.485 Sum_probs=80.5
Q ss_pred CCCCCcceeeCHHHHHHHHHHhhC----CCcEEEEEecCCCCceeEEEeecCCCCCCCeEEEeCCeEeeec-CccccCCC
Q psy7477 21 SASTLKDLVIHDSCIKKLKEISTD----GSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKIPTL-SPYSTSSP 95 (237)
Q Consensus 21 ~~~~~~~itlT~~A~~~i~~l~~~----~~~lRi~v~~gGCsG~~Y~l~~~~~~~~~D~~~~~~g~~v~i~-~s~~~l~g 95 (237)
++.+.++|+||++|+++|+++++. ..+|||+|+++||+||+|.|.+++++.++|.+++.+|++|+|+ .+++||+|
T Consensus 3 ~~~~~~~i~iT~~A~~~i~~~~~~~~~~~~~LRi~v~~~GCsG~~y~l~l~~~~~~~D~v~e~~gv~v~id~~s~~~l~g 82 (115)
T PRK13623 3 SDDVPLPLVFTDAAAAKVKELIEEEGNPDLKLRVYITGGGCSGFQYGFTFDEQVNEDDTTIEKQGVTLVVDPMSLQYLVG 82 (115)
T ss_pred ccccCcceEECHHHHHHHHHHHhhCCCCceEEEEEEeCCCCCCcEEEEEECCCCCCCCEEEEcCCEEEEEcHHHHHHhCC
Confidence 455678899999999999999964 2359999999999999999999988899999999999999995 89999999
Q ss_pred CCCCCcccc-ccceeech
Q psy7477 96 SEKPVSAST-LKDLVIHD 112 (237)
Q Consensus 96 ~~IDy~~~~-~~~i~IT~ 112 (237)
++|||.++. ...+.++.
T Consensus 83 ~~IDy~~~~~~~~F~f~N 100 (115)
T PRK13623 83 AEVDYTEGLEGSRFVIKN 100 (115)
T ss_pred CEEEeecCCCcceEEEEC
Confidence 999999875 34566644
No 20
>PRK09502 iscA iron-sulfur cluster assembly protein; Provisional
Probab=99.81 E-value=6.7e-20 Score=141.44 Aligned_cols=87 Identities=21% Similarity=0.332 Sum_probs=77.4
Q ss_pred cceeeCHHHHHHHHHHhhC---CCcEEEEEecCCCCceeEEEeecCCCCCCCeEEEeCCeEeee-cCccccCCCCCCCCc
Q psy7477 26 KDLVIHDSCIKKLKEISTD---GSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKIPT-LSPYSTSSPSEKPVS 101 (237)
Q Consensus 26 ~~itlT~~A~~~i~~l~~~---~~~lRi~v~~gGCsG~~Y~l~~~~~~~~~D~~~~~~g~~v~i-~~s~~~l~g~~IDy~ 101 (237)
|+|+|||+|+++|++++++ ..+|||+|+++||+|++|.|.|++++.++|.+++.+|++|+| +.+++||.|++|||+
T Consensus 1 m~i~iT~~A~~~i~~l~~~~~~~~~LRi~v~~~GCsG~~Y~l~~~~~~~~~D~~~~~~g~~v~id~~s~~~l~g~~IDy~ 80 (107)
T PRK09502 1 MSITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFV 80 (107)
T ss_pred CeEEECHHHHHHHHHHHhCcCCCceEEEEEECCCcCCeeeEeeecCCCCCCCEEEEcCCeEEEEeHHHHhHhCCCEEEEe
Confidence 3599999999999999975 246999999999999999999988899999999999999999 499999999999999
Q ss_pred ccc-ccceeech
Q psy7477 102 AST-LKDLVIHD 112 (237)
Q Consensus 102 ~~~-~~~i~IT~ 112 (237)
++. ...+++..
T Consensus 81 ~~~~~~~F~f~N 92 (107)
T PRK09502 81 KEGLNEGFKFTN 92 (107)
T ss_pred eCCCCceEEEEC
Confidence 875 45676654
No 21
>KOG1120|consensus
Probab=99.80 E-value=1.3e-19 Score=140.84 Aligned_cols=99 Identities=22% Similarity=0.295 Sum_probs=85.7
Q ss_pred CCCCCCCCCCcceeeCHHHHHHHHHHhhC---CCcEEEEEecCCCCceeEEEeecCCCCCCCeEEEeCCeEeee-cCccc
Q psy7477 16 SEKPVSASTLKDLVIHDSCIKKLKEISTD---GSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKIPT-LSPYS 91 (237)
Q Consensus 16 ~~~~~~~~~~~~itlT~~A~~~i~~l~~~---~~~lRi~v~~gGCsG~~Y~l~~~~~~~~~D~~~~~~g~~v~i-~~s~~ 91 (237)
.+++..+.++.-|+|||.|.+||++++++ ..+|||+|+.+||+|++|.|+|.+.+...|.+++++|++||| +++++
T Consensus 18 ~a~~~~~~~k~~ltLTp~Av~~ik~ll~~~~e~~~lrigVk~rGCnGlsYtleY~~~kgkfDE~VeqdGv~I~ie~KA~l 97 (134)
T KOG1120|consen 18 PAARKLAPRKAALTLTPSAVNHIKQLLSDKPEDVCLRIGVKQRGCNGLSYTLEYTKTKGKFDEVVEQDGVRIFIEPKALL 97 (134)
T ss_pred cccccccccccccccCHHHHHHHHHHHHhCCcCceeEEEEecCCcCcceeeeeeeccCCCCcceeeecCcEEEEccccee
Confidence 33444567788899999999999999984 468999999999999999999999889999999999999999 69999
Q ss_pred cCCCCCCCCccccc--cceeechHH
Q psy7477 92 TSSPSEKPVSASTL--KDLVIHDSC 114 (237)
Q Consensus 92 ~l~g~~IDy~~~~~--~~i~IT~~A 114 (237)
++.|+++||+++.. .-+.++|+|
T Consensus 98 ~liGteMDyvddkL~Sefvf~npna 122 (134)
T KOG1120|consen 98 TLIGTEMDYVDDKLSSEFVFSNPNA 122 (134)
T ss_pred eeccceehhhhhhhcCceEeeCCCc
Confidence 99999999999853 334566664
No 22
>TIGR01997 sufA_proteo FeS assembly scaffold SufA. This model represents the SufA protein of the SUF system of iron-sulfur cluster biosynthesis. This system performs FeS biosynthesis even during oxidative stress and tends to be absent in obligate anaerobic and microaerophilic bacteria.
Probab=99.80 E-value=1.7e-19 Score=139.12 Aligned_cols=87 Identities=16% Similarity=0.315 Sum_probs=77.5
Q ss_pred cceeeCHHHHHHHHHHhhC---CCcEEEEEecCCCCceeEEEeecCCCCCCCeEEEeCCeEeeec-CccccCCCCCCCCc
Q psy7477 26 KDLVIHDSCIKKLKEISTD---GSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKIPTL-SPYSTSSPSEKPVS 101 (237)
Q Consensus 26 ~~itlT~~A~~~i~~l~~~---~~~lRi~v~~gGCsG~~Y~l~~~~~~~~~D~~~~~~g~~v~i~-~s~~~l~g~~IDy~ 101 (237)
++|+|||+|+++|++++++ ..+|||+|+++||+|++|.|.++++++++|.+++.+|++|+|+ .++.||.|++|||+
T Consensus 1 ~~i~iT~~A~~~i~~l~~~~~~~~~lRi~v~~~GC~G~~y~~~l~~~~~~~D~v~~~~g~~v~id~~s~~~l~g~~IDy~ 80 (107)
T TIGR01997 1 AVITLTDAAAIHIRELVAKRPEAVGIRLGVKKTGCAGMEYVLDLVSEPKKDDDLIEHDGAKVFVAPEAVLFILGTQVDFV 80 (107)
T ss_pred CeEEECHHHHHHHHHHHhcCCCCcEEEEEEECCCCCCcEEEeeecCCCCCCCEEEecCCEEEEEcHHHHhhhCCCEEEEE
Confidence 3699999999999999975 2479999999999999999999888999999999999999995 99999999999999
Q ss_pred ccc-ccceeech
Q psy7477 102 AST-LKDLVIHD 112 (237)
Q Consensus 102 ~~~-~~~i~IT~ 112 (237)
++. ...+++..
T Consensus 81 ~~~~~~~F~~~N 92 (107)
T TIGR01997 81 RTTLRQGFKFNN 92 (107)
T ss_pred EcCCcceEEEEC
Confidence 985 34566643
No 23
>TIGR02011 IscA iron-sulfur cluster assembly protein IscA. This clade is limited to the proteobacteria.
Probab=99.78 E-value=6.1e-19 Score=135.59 Aligned_cols=85 Identities=21% Similarity=0.345 Sum_probs=75.7
Q ss_pred eeeCHHHHHHHHHHhhC---CCcEEEEEecCCCCceeEEEeecCCCCCCCeEEEeCCeEeee-cCccccCCCCCCCCccc
Q psy7477 28 LVIHDSCIKKLKEISTD---GSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKIPT-LSPYSTSSPSEKPVSAS 103 (237)
Q Consensus 28 itlT~~A~~~i~~l~~~---~~~lRi~v~~gGCsG~~Y~l~~~~~~~~~D~~~~~~g~~v~i-~~s~~~l~g~~IDy~~~ 103 (237)
|+|||+|+++|++++++ ..+|||+|+++||+|++|.|.|+++++++|.+++.+|++|+| +.++.||+|++|||.++
T Consensus 1 I~iT~~A~~~i~~~~~~~~~~~~lRi~v~~~GCsG~~y~l~l~~~~~~~D~v~~~~g~~v~id~~s~~~l~g~~IDy~~~ 80 (105)
T TIGR02011 1 ITLTDSAAARVNTFLANRGKGFGLRLGVKTSGCSGMAYVLEFVDEPTPDDIVFEDKGVKIVIDGKSLQYLDGTQLDFVKE 80 (105)
T ss_pred CEECHHHHHHHHHHHhccCCCceEEEEEeCCCCCCEEEEeeecCCCCCCCEEEEcCCEEEEEcHHHhHHhCCCEEEEecC
Confidence 68999999999999975 247999999999999999999988899999999999999999 59999999999999987
Q ss_pred c-ccceeech
Q psy7477 104 T-LKDLVIHD 112 (237)
Q Consensus 104 ~-~~~i~IT~ 112 (237)
. ...+++..
T Consensus 81 ~~~~~F~~~n 90 (105)
T TIGR02011 81 GLNEGFKFTN 90 (105)
T ss_pred CCcceEEEEC
Confidence 4 34566643
No 24
>PRK11190 Fe/S biogenesis protein NfuA; Provisional
Probab=99.77 E-value=9.3e-19 Score=147.95 Aligned_cols=85 Identities=13% Similarity=0.145 Sum_probs=75.5
Q ss_pred ceeeCHHHHHHHHHHhhC---CCcEEEEEecCCCCceeEEEee--cCCCCCCCeEEEeCCeEeee-cCccccCCCCCCCC
Q psy7477 27 DLVIHDSCIKKLKEISTD---GSFLRIIVEGGGCSGFQYKFEL--DTQVSDEDRVYEKSGCKIPT-LSPYSTSSPSEKPV 100 (237)
Q Consensus 27 ~itlT~~A~~~i~~l~~~---~~~lRi~v~~gGCsG~~Y~l~~--~~~~~~~D~~~~~~g~~v~i-~~s~~~l~g~~IDy 100 (237)
||+|||+|+++|++++++ ..+|||+|++|||+||+|.|.| ++++.++|.+++.+|++|+| +.+++||.|++|||
T Consensus 1 ~i~iTd~A~~~i~~ll~~~~~~~~LRI~V~~gGCsG~~Y~~~~~~~~~~~~~D~v~e~~gv~v~Vd~~S~~~L~G~~IDy 80 (192)
T PRK11190 1 MITISDAAQAHFAKLLANQEEGTQIRVFVINPGTPNAECGVSYCPPDAVEATDTELKFDGFSAYVDELSAPFLEDAEIDF 80 (192)
T ss_pred CcEECHHHHHHHHHHHhcCCCCceEEEEEECCCcCCceeeeEEeecCCCCCCCEEEEeCCEEEEECcchHhHhCCCEEEE
Confidence 689999999999999975 2469999999999999999999 77788999999999999999 59999999999999
Q ss_pred cccc-ccceeec
Q psy7477 101 SAST-LKDLVIH 111 (237)
Q Consensus 101 ~~~~-~~~i~IT 111 (237)
.++. ...|++.
T Consensus 81 ve~~~g~gF~f~ 92 (192)
T PRK11190 81 VTDQLGSQLTLK 92 (192)
T ss_pred eecCCCCceEEE
Confidence 9874 3455554
No 25
>TIGR03341 YhgI_GntY IscR-regulated protein YhgI. IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization.
Probab=99.72 E-value=1.7e-17 Score=140.21 Aligned_cols=84 Identities=13% Similarity=0.099 Sum_probs=73.7
Q ss_pred eeeCHHHHHHHHHHhhC---CCcEEEEEecCCCCceeEEEee--cCCCCCCCeEEEeCCeEeee-cCccccCCCCCCCCc
Q psy7477 28 LVIHDSCIKKLKEISTD---GSFLRIIVEGGGCSGFQYKFEL--DTQVSDEDRVYEKSGCKIPT-LSPYSTSSPSEKPVS 101 (237)
Q Consensus 28 itlT~~A~~~i~~l~~~---~~~lRi~v~~gGCsG~~Y~l~~--~~~~~~~D~~~~~~g~~v~i-~~s~~~l~g~~IDy~ 101 (237)
|+||++|+++|++++++ +.+|||+|+++||+||+|.|.| ++++.++|.+++.+|++|+| +.+++||.|++|||.
T Consensus 1 I~IT~~A~~~l~~ll~~~~~~~~LRv~V~~gGCsG~~Y~l~~~~~~~~~~~D~v~e~~g~~v~Vd~~s~~~L~g~~IDyv 80 (190)
T TIGR03341 1 ITITEAAQAYLAKLLAKQNEGTGIRVFVVNPGTPYAECCVSYCPPDEVEPSDIKLEFNGFSAYVDALSAPFLEDAVIDFV 80 (190)
T ss_pred CEECHHHHHHHHHHHhhCCCCceEEEEEECCccCCceeeeEEcccCCCCCCCEEEEeCCEEEEEccchhhHhCCCEEEEe
Confidence 68999999999999975 2479999999999999999999 67788999999999999999 599999999999999
Q ss_pred ccc-ccceeec
Q psy7477 102 AST-LKDLVIH 111 (237)
Q Consensus 102 ~~~-~~~i~IT 111 (237)
++. ...|++.
T Consensus 81 e~~~g~gF~f~ 91 (190)
T TIGR03341 81 TDRMGGQLTLK 91 (190)
T ss_pred ecCCCceeEEe
Confidence 874 3445443
No 26
>KOG1119|consensus
Probab=99.70 E-value=4.9e-17 Score=133.69 Aligned_cols=78 Identities=40% Similarity=0.743 Sum_probs=73.8
Q ss_pred cceeeCHHHHHHHHHHhhCC-CcEEEEEecCCCCceeEEEeecCCCCCCCeEEEeCCeEeeec-CccccCCCCCCCCccc
Q psy7477 26 KDLVIHDSCIKKLKEISTDG-SFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKIPTL-SPYSTSSPSEKPVSAS 103 (237)
Q Consensus 26 ~~itlT~~A~~~i~~l~~~~-~~lRi~v~~gGCsG~~Y~l~~~~~~~~~D~~~~~~g~~v~i~-~s~~~l~g~~IDy~~~ 103 (237)
..+.|+|+|.++++++...+ ..|||.|++|||+||+|++.+|....++|.+++.+|.+|+|| .|+.++.|++|||.++
T Consensus 92 ~~~~lsds~~krl~EI~~~~pe~LRl~VegGGCsGFQYkf~LD~~in~dD~vf~e~~arVVvD~~SL~~~kGatvdy~~E 171 (199)
T KOG1119|consen 92 FNLHLSDSCSKRLKEIYENSPEFLRLTVEGGGCSGFQYKFRLDNKINNDDRVFVENGARVVVDNVSLNLLKGATVDYTNE 171 (199)
T ss_pred ceEEehhHHHHHHHHHHhCCcceEEEEEecCCccceEEEEEecCCCCCcceEEeeCCcEEEEeccchhhccCceeehHHH
Confidence 45899999999999999876 789999999999999999999999999999999999999996 9999999999999776
No 27
>TIGR00049 Iron-sulfur cluster assembly accessory protein. Proteins in this subfamily appear to be associated with the process of FeS-cluster assembly. The HesB proteins are associated with the nif gene cluster and the Rhizobium gene IscN has been shown to be required for nitrogen fixation. Nitrogenase includes multiple FeS clusters and many genes for their assembly. The E. coli SufA protein is associated with SufS, a NifS homolog and SufD which are involved in the FeS cluster assembly of the FhnF protein. The Azotobacter protein IscA (homologs of which are also found in E.coli) is associated which IscS, another NifS homolog and IscU, a nifU homolog as well as other factors consistent with a role in FeS cluster chemistry. A homolog from Geobacter contains a selenocysteine in place of an otherwise invariant cysteine, further suggesting a role in redox chemistry.
Probab=99.66 E-value=2.7e-16 Score=120.48 Aligned_cols=83 Identities=29% Similarity=0.469 Sum_probs=73.8
Q ss_pred eeCHHHHHHHHHHhhCC----CcEEEEEecCCCCceeEEEeecCCCCCCCeEEEeCCeEeeec-CccccCCCCCCCCccc
Q psy7477 29 VIHDSCIKKLKEISTDG----SFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKIPTL-SPYSTSSPSEKPVSAS 103 (237)
Q Consensus 29 tlT~~A~~~i~~l~~~~----~~lRi~v~~gGCsG~~Y~l~~~~~~~~~D~~~~~~g~~v~i~-~s~~~l~g~~IDy~~~ 103 (237)
+||++|+++|+++++.+ .+|||+++.+||+|++|.|.+++++.++|.+++.+|++|+|+ .+++||+|++|||.++
T Consensus 1 ~iT~~A~~~l~~~~~~~~~~~~~lRi~~~~~Gc~G~~~~l~l~~~~~~~D~~~~~~gi~~~id~~~~~~l~~~~IDy~~~ 80 (105)
T TIGR00049 1 TLTDSAAKRIKALLAGEGEPNLGLRVGVKGGGCSGLQYGLEFDDEPNEDDEVFEQDGVKVVVDPKSLPYLDGSEIDYVEE 80 (105)
T ss_pred CcCHHHHHHHHHHHhcCCCCceEEEEEEecCCCCCeEEEEeecCCCCCCCEEEEcCCEEEEEeHHHHhhhCCCEEEEeec
Confidence 58999999999999752 479999999999999999999988889999999999999995 8999999999999997
Q ss_pred c-ccceeec
Q psy7477 104 T-LKDLVIH 111 (237)
Q Consensus 104 ~-~~~i~IT 111 (237)
. ...+.|.
T Consensus 81 ~~~~~f~i~ 89 (105)
T TIGR00049 81 LLGSGFTFT 89 (105)
T ss_pred CCcceEEEE
Confidence 5 3455554
No 28
>COG4841 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.54 E-value=2.8e-14 Score=104.34 Aligned_cols=85 Identities=24% Similarity=0.409 Sum_probs=72.0
Q ss_pred cceeechHHHHHHHHHhc--CCCceEEEEecCCCC----cceeeEEecCCCCCCCeEEEeCCeEEEEcCCccccccC--c
Q psy7477 106 KDLVIHDSCIKKLKEIST--DGSFLRIIVEGGGCS----GFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQG--S 177 (237)
Q Consensus 106 ~~i~IT~~A~~~l~~~l~--~~~~lRi~v~~~GCs----G~~y~l~~~~~~~~~D~v~~~~Gi~v~id~~s~~~L~g--~ 177 (237)
|.|+||+.|++|+++.+. ++..||++++.|||+ ||+.+++.+. |++--...+.+|++|||+++++||+++ +
T Consensus 1 Mni~vtd~A~~wfk~E~~l~~g~~vrffvRyGG~~~~~~GFS~gv~~e~-PkE~g~~q~~Dgltffiee~DlWYF~d~d~ 79 (95)
T COG4841 1 MNIEVTDQALKWFKEELDLEEGNKVRFFVRYGGCSSLQQGFSLGVAKEV-PKEIGYKQEYDGLTFFIEEKDLWYFDDHDL 79 (95)
T ss_pred CceEEcHHHHHHHHHhcCCCCCCEEEEEEEEcCcccccCCcceeeeccC-chhhchheeecCeEEEEecCceEEEcCCcE
Confidence 579999999999999986 578999999999997 5445544443 566666778999999999999999999 9
Q ss_pred EEEEEecCccceeE
Q psy7477 178 VIEYHQELIRSAFQ 191 (237)
Q Consensus 178 ~IDy~e~~~g~gF~ 191 (237)
+|||..+.....|.
T Consensus 80 ~v~y~~~~Dei~fs 93 (95)
T COG4841 80 KVDYSPDTDEISFS 93 (95)
T ss_pred EEeccCCCCcceee
Confidence 99999988777775
No 29
>PF01521 Fe-S_biosyn: Iron-sulphur cluster biosynthesis; InterPro: IPR000361 The proteins in this entry are variously annotated as iron-sulphur cluster insertion protein or Fe/S biogenesis protein. They appear to be involved in Fe-S cluster biogenesis. This family includes IscA, HesB, YadR and YfhF-like proteins. The hesB gene is expressed only under nitrogen fixation conditions []. IscA, an 11 kDa member of the hesB family of proteins, binds iron and [2Fe-2S] clusters, and participates in the biosynthesis of iron-sulphur proteins. IscA is able to bind at least 2 iron ions per dimer []. Other members of this family include various hypothetical proteins that also contain the NifU-like domain (IPR001075 from INTERPRO) suggesting that they too are able to bind iron and are involved in Fe-S cluster biogenesis. The HesB family are found in species as divergent as Homo sapiens (Human) and Haemophilus influenzae suggesting that these proteins are involved in basic cellular functions []. ; PDB: 2D2A_A 1X0G_D 1NWB_A 2K4Z_A 1R94_B 1R95_A 1S98_B 2P2E_A 2QGO_A 2APN_A.
Probab=99.50 E-value=2.9e-14 Score=110.20 Aligned_cols=79 Identities=24% Similarity=0.378 Sum_probs=71.1
Q ss_pred cceeeCHHHHHHHHHHhhCCCc-EEEEEecCC--------CC-ceeEEEeecCCC-CCCCeEEEeCCeEeee-cCccccC
Q psy7477 26 KDLVIHDSCIKKLKEISTDGSF-LRIIVEGGG--------CS-GFQYKFELDTQV-SDEDRVYEKSGCKIPT-LSPYSTS 93 (237)
Q Consensus 26 ~~itlT~~A~~~i~~l~~~~~~-lRi~v~~gG--------Cs-G~~Y~l~~~~~~-~~~D~~~~~~g~~v~i-~~s~~~l 93 (237)
|.|+||++|+++|++++.+... |||.+..+| |+ |++|.|.++++. .++|.+++.+|++|+| +.++.||
T Consensus 1 M~I~iT~~A~~~l~~~~~~~~~~irl~~~~gg~p~~~~~~C~~g~~y~l~~~~~~~~~~D~~~~~~~~~i~i~~~~~~~l 80 (112)
T PF01521_consen 1 MKITITDAAAERLKQLLKEDPKKIRLFVDDGGSPYSREGCCSIGFSYSLALVDKPDEEYDIVIESNGFTIYIDKYSLWYL 80 (112)
T ss_dssp -EEEE-HHHHHHHHHHHHCTTESEEEEEEEESSCCGGSS-TTSEEEEEEEEESSTSTTSCEEEEETTEEEEEEGGGHHHH
T ss_pred CEEEECHHHHHHHHHHHhcCCCEEEEEEECCCcccccCCCCCCCcEEeEEEeecccccceEEEeeeEEEEEEeccHhhhh
Confidence 5699999999999999998655 999999998 99 999999999877 8999999999999999 5889999
Q ss_pred -CCCCCCCcccc
Q psy7477 94 -SPSEKPVSAST 104 (237)
Q Consensus 94 -~g~~IDy~~~~ 104 (237)
.|++|||.++.
T Consensus 81 ~~~~~iD~~~~~ 92 (112)
T PF01521_consen 81 DEGLTIDYVEDL 92 (112)
T ss_dssp -TTEEEEEEEET
T ss_pred hCCCEEEEEEcc
Confidence 99999998764
No 30
>COG4841 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.74 E-value=2e-08 Score=73.79 Aligned_cols=78 Identities=22% Similarity=0.245 Sum_probs=64.2
Q ss_pred cceeeCHHHHHHHHHHhh--CCCcEEEEEecCCCC----ceeEEEeecCCCCCCCeEEEeCCeEeee-cCccccCCC--C
Q psy7477 26 KDLVIHDSCIKKLKEIST--DGSFLRIIVEGGGCS----GFQYKFELDTQVSDEDRVYEKSGCKIPT-LSPYSTSSP--S 96 (237)
Q Consensus 26 ~~itlT~~A~~~i~~l~~--~~~~lRi~v~~gGCs----G~~Y~l~~~~~~~~~D~~~~~~g~~v~i-~~s~~~l~g--~ 96 (237)
|.|++|++|.+..++-+. ++..+|++|+-|||+ ||+..+.-+ .|++--..-+.+|++||| .+.++|.++ .
T Consensus 1 Mni~vtd~A~~wfk~E~~l~~g~~vrffvRyGG~~~~~~GFS~gv~~e-~PkE~g~~q~~Dgltffiee~DlWYF~d~d~ 79 (95)
T COG4841 1 MNIEVTDQALKWFKEELDLEEGNKVRFFVRYGGCSSLQQGFSLGVAKE-VPKEIGYKQEYDGLTFFIEEKDLWYFDDHDL 79 (95)
T ss_pred CceEEcHHHHHHHHHhcCCCCCCEEEEEEEEcCcccccCCcceeeecc-CchhhchheeecCeEEEEecCceEEEcCCcE
Confidence 569999999999999875 467899999999997 777777653 355555566889999999 699999999 7
Q ss_pred CCCCcccc
Q psy7477 97 EKPVSAST 104 (237)
Q Consensus 97 ~IDy~~~~ 104 (237)
.|||..++
T Consensus 80 ~v~y~~~~ 87 (95)
T COG4841 80 KVDYSPDT 87 (95)
T ss_pred EEeccCCC
Confidence 78988775
No 31
>COG4918 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.11 E-value=4.7e-06 Score=62.91 Aligned_cols=77 Identities=18% Similarity=0.183 Sum_probs=62.8
Q ss_pred cceeeCHHHHHHHHHHhhC----CCcEEEEEecCCCCc---eeEEEeecCCCCCCCeEEEeCCeEeee-c-CccccCCCC
Q psy7477 26 KDLVIHDSCIKKLKEISTD----GSFLRIIVEGGGCSG---FQYKFELDTQVSDEDRVYEKSGCKIPT-L-SPYSTSSPS 96 (237)
Q Consensus 26 ~~itlT~~A~~~i~~l~~~----~~~lRi~v~~gGCsG---~~Y~l~~~~~~~~~D~~~~~~g~~v~i-~-~s~~~l~g~ 96 (237)
|.|++|++|+++|++...- +..||+-.++.||.| +.|.+.-++ ...|..++.++.+++| + .+..|-+.+
T Consensus 1 M~Itftd~a~~~l~~a~d~nl~~~~hl~ydtEgc~Ca~SGi~t~rlvae~--tg~d~~idsn~gPiyik~~~~~Ff~D~m 78 (114)
T COG4918 1 MKITFTDKAADKLKAAGDVNLVFDDHLLYDTEGCACAGSGISTYRLVAEE--TGFDASIDSNFGPIYIKDYGSYFFQDEM 78 (114)
T ss_pred CeEEecHHHHHHHHHhhccCcCccceEEEeccccccccCCcceEEEEEec--cCcccccccCCCcEEEEecceeEeccee
Confidence 4699999999999988764 357898888889965 666665443 5678889999999999 5 888888999
Q ss_pred CCCCcccc
Q psy7477 97 EKPVSAST 104 (237)
Q Consensus 97 ~IDy~~~~ 104 (237)
+|||.++.
T Consensus 79 tidyN~~~ 86 (114)
T COG4918 79 TIDYNPSY 86 (114)
T ss_pred eeecCCcc
Confidence 99998774
No 32
>COG4918 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.09 E-value=7.4e-06 Score=61.85 Aligned_cols=80 Identities=19% Similarity=0.243 Sum_probs=63.0
Q ss_pred cceeechHHHHHHHHHhcC----CCceEEEEecCCCCc-ceeeEEecCCCCCCCeEEEeCCeEEEEcCCccccccC-cEE
Q psy7477 106 KDLVIHDSCIKKLKEISTD----GSFLRIIVEGGGCSG-FQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQG-SVI 179 (237)
Q Consensus 106 ~~i~IT~~A~~~l~~~l~~----~~~lRi~v~~~GCsG-~~y~l~~~~~~~~~D~v~~~~Gi~v~id~~s~~~L~g-~~I 179 (237)
|.|++|++|+++|+..... ...+|...++.||.| --+.+.++.+.+..|..++.++.+++|-..-.-||++ ++|
T Consensus 1 M~Itftd~a~~~l~~a~d~nl~~~~hl~ydtEgc~Ca~SGi~t~rlvae~tg~d~~idsn~gPiyik~~~~~Ff~D~mti 80 (114)
T COG4918 1 MKITFTDKAADKLKAAGDVNLVFDDHLLYDTEGCACAGSGISTYRLVAEETGFDASIDSNFGPIYIKDYGSYFFQDEMTI 80 (114)
T ss_pred CeEEecHHHHHHHHHhhccCcCccceEEEeccccccccCCcceEEEEEeccCcccccccCCCcEEEEecceeEecceeee
Confidence 5799999999999988763 367888778888854 1344444444467899999999999999998888886 799
Q ss_pred EEEecC
Q psy7477 180 EYHQEL 185 (237)
Q Consensus 180 Dy~e~~ 185 (237)
||.+..
T Consensus 81 dyN~~~ 86 (114)
T COG4918 81 DYNPSY 86 (114)
T ss_pred ecCCcc
Confidence 999764
No 33
>COG3564 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.93 E-value=0.019 Score=43.32 Aligned_cols=88 Identities=11% Similarity=0.117 Sum_probs=62.1
Q ss_pred CCcceeeCHHHHHHHHHHhhCCCcEEEEEecCCCCceeEEEeecC---CCCCCCeEE-EeCCeEeee--c-CccccCCCC
Q psy7477 24 TLKDLVIHDSCIKKLKEISTDGSFLRIIVEGGGCSGFQYKFELDT---QVSDEDRVY-EKSGCKIPT--L-SPYSTSSPS 96 (237)
Q Consensus 24 ~~~~itlT~~A~~~i~~l~~~~~~lRi~v~~gGCsG~~Y~l~~~~---~~~~~D~~~-~~~g~~v~i--~-~s~~~l~g~ 96 (237)
++..++.|++|..-|++|..+-. =-+|-..|||+.=+-.|-|.. -..+.|+.. +.+|++||| + -.++-.-..
T Consensus 3 ~~~~V~aT~aAl~Li~~l~~~hg-pvmFHQSGGCCDGSsPMCYP~~~fivGd~DvlLG~i~gvPvyIs~~QyeaWKHTqL 81 (116)
T COG3564 3 MPARVLATPAALDLIAELQAEHG-PVMFHQSGGCCDGSSPMCYPRADFIVGDNDVLLGEIDGVPVYISGPQYEAWKHTQL 81 (116)
T ss_pred CCcceecCHHHHHHHHHHHHhcC-CEEEeccCCccCCCCCccccccceeecCCceEEeeeCCEEEEecCcHHhhhhccEE
Confidence 34568999999999999987643 356778888874355565532 124566644 789999999 3 234455566
Q ss_pred CCCCccccccceeech
Q psy7477 97 EKPVSASTLKDLVIHD 112 (237)
Q Consensus 97 ~IDy~~~~~~~i~IT~ 112 (237)
.||.+.....|+.+..
T Consensus 82 IIDVVpGRGGmFSLdn 97 (116)
T COG3564 82 IIDVVPGRGGMFSLDN 97 (116)
T ss_pred EEEEecCCCceeEccC
Confidence 7898888888988853
No 34
>COG3564 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.83 E-value=0.5 Score=35.79 Aligned_cols=88 Identities=17% Similarity=0.262 Sum_probs=59.8
Q ss_pred cceeechHHHHHHHHHhcCCCceEEEEecCCCCcceeeEEecCC---CCCCCeEE-EeCCeEEEEcCCccccccC--cEE
Q psy7477 106 KDLVIHDSCIKKLKEISTDGSFLRIIVEGGGCSGFQYKFELDTQ---VSDEDRVY-EKSGCKVVIDQTSLEYVQG--SVI 179 (237)
Q Consensus 106 ~~i~IT~~A~~~l~~~l~~~~~lRi~v~~~GCsG~~y~l~~~~~---~~~~D~v~-~~~Gi~v~id~~s~~~L~g--~~I 179 (237)
..+..|++|+.-|.++..+...+-+ -..+||..-+--|-+... .-++|+.. +.+|++|||......+-+- +.|
T Consensus 5 ~~V~aT~aAl~Li~~l~~~hgpvmF-HQSGGCCDGSsPMCYP~~~fivGd~DvlLG~i~gvPvyIs~~QyeaWKHTqLII 83 (116)
T COG3564 5 ARVLATPAALDLIAELQAEHGPVMF-HQSGGCCDGSSPMCYPRADFIVGDNDVLLGEIDGVPVYISGPQYEAWKHTQLII 83 (116)
T ss_pred cceecCHHHHHHHHHHHHhcCCEEE-eccCCccCCCCCccccccceeecCCceEEeeeCCEEEEecCcHHhhhhccEEEE
Confidence 3578899999998888877555544 456666422333333221 13567765 7899999999998877775 788
Q ss_pred EEEecCccceeEEeeCC
Q psy7477 180 EYHQELIRSAFQISNNP 196 (237)
Q Consensus 180 Dy~e~~~g~gF~i~~nP 196 (237)
|.+.. .|..|.+ +|-
T Consensus 84 DVVpG-RGGmFSL-dng 98 (116)
T COG3564 84 DVVPG-RGGMFSL-DNG 98 (116)
T ss_pred EEecC-CCceeEc-cCC
Confidence 87755 4778886 653
No 35
>PF05610 DUF779: Protein of unknown function (DUF779); InterPro: IPR008497 This family consists of several bacterial proteins of unknown function.
Probab=93.15 E-value=0.41 Score=36.03 Aligned_cols=76 Identities=18% Similarity=0.310 Sum_probs=50.1
Q ss_pred HHhcCCCceEEEEecCCCCcceeeEEecC---CCCCCCeEE-EeCCeEEEEcCCccccccC--cEEEEEecCccceeEEe
Q psy7477 120 EISTDGSFLRIIVEGGGCSGFQYKFELDT---QVSDEDRVY-EKSGCKVVIDQTSLEYVQG--SVIEYHQELIRSAFQIS 193 (237)
Q Consensus 120 ~~l~~~~~lRi~v~~~GCsG~~y~l~~~~---~~~~~D~v~-~~~Gi~v~id~~s~~~L~g--~~IDy~e~~~g~gF~i~ 193 (237)
++.++...|=+ -..+||..-+-=|-+.. ...+.|+.+ +..|++|+|.+....|.+. ++||-++. .|.+|.+
T Consensus 5 ~L~~~HG~lmF-hQSGGCCDGSaPmC~p~gef~~g~~DV~LG~i~g~~fym~~~qfeywkht~L~iDVv~G-rG~~FSL- 81 (95)
T PF05610_consen 5 RLKAKHGPLMF-HQSGGCCDGSAPMCYPAGEFRVGDSDVLLGEIGGVPFYMSKDQFEYWKHTQLTIDVVPG-RGGGFSL- 81 (95)
T ss_pred HHHHhcCCEEE-EeCCCCCCCCcceeEeCCceecCCCcEEEEEecCeEEEEchHHHHHhhCcEEEEEEEec-CCCeeec-
Confidence 33333344444 45667742233344432 234677765 8899999999999999997 68998764 5789986
Q ss_pred eCCCC
Q psy7477 194 NNPQV 198 (237)
Q Consensus 194 ~nP~~ 198 (237)
++|..
T Consensus 82 E~~~G 86 (95)
T PF05610_consen 82 EAPEG 86 (95)
T ss_pred cCCCC
Confidence 77754
No 36
>COG0694 Thioredoxin-like proteins and domains [Posttranslational modification, protein turnover, chaperones]
Probab=60.67 E-value=1.9 Score=32.49 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=19.4
Q ss_pred CCCchhcccccceeeeCCCCcc
Q psy7477 211 SPSNITRIRPRLSYRISPGIDS 232 (237)
Q Consensus 211 ~~~~~~~~~~~~~~~i~p~~~~ 232 (237)
..+..+|++++|+.+|+|+|+.
T Consensus 7 ~~~~~e~v~~~l~~~irP~l~~ 28 (93)
T COG0694 7 DAELLERVEEVLDEKIRPQLAM 28 (93)
T ss_pred cHHHHHHHHHHHHhccCcceec
Confidence 4568999999999999999974
No 37
>PF05610 DUF779: Protein of unknown function (DUF779); InterPro: IPR008497 This family consists of several bacterial proteins of unknown function.
Probab=56.74 E-value=16 Score=27.61 Aligned_cols=72 Identities=13% Similarity=0.199 Sum_probs=42.9
Q ss_pred HHHHhhCCCcEEEEEecCCCCceeEEEeecC---CCCCCCeEE-EeCCeEeeec-CccccCCCCC--CCCccccccceee
Q psy7477 38 LKEISTDGSFLRIIVEGGGCSGFQYKFELDT---QVSDEDRVY-EKSGCKIPTL-SPYSTSSPSE--KPVSASTLKDLVI 110 (237)
Q Consensus 38 i~~l~~~~~~lRi~v~~gGCsG~~Y~l~~~~---~~~~~D~~~-~~~g~~v~i~-~s~~~l~g~~--IDy~~~~~~~i~I 110 (237)
|++|.++-+ =-++-..|||+.-+-.|=|.. ...+.|+.+ +.+|++|||. ....|...+. ||.+.-...++.+
T Consensus 3 i~~L~~~HG-~lmFhQSGGCCDGSaPmC~p~gef~~g~~DV~LG~i~g~~fym~~~qfeywkht~L~iDVv~GrG~~FSL 81 (95)
T PF05610_consen 3 IRRLKAKHG-PLMFHQSGGCCDGSAPMCYPAGEFRVGDSDVLLGEIGGVPFYMSKDQFEYWKHTQLTIDVVPGRGGGFSL 81 (95)
T ss_pred HHHHHHhcC-CEEEEeCCCCCCCCcceeEeCCceecCCCcEEEEEecCeEEEEchHHHHHhhCcEEEEEEEecCCCeeec
Confidence 445544432 246667888874455666642 245667644 7899999994 5556666654 4665544444444
No 38
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=52.80 E-value=7.9 Score=30.96 Aligned_cols=29 Identities=10% Similarity=-0.219 Sum_probs=17.6
Q ss_pred eCCCCC-CCCCCCCCCCCCCCchhcccccceeeeC
Q psy7477 194 NNPQVE-QGNLTKGDHFISPSNITRIRPRLSYRIS 227 (237)
Q Consensus 194 ~nP~~~-~~CgCG~Sf~~~~~~~~~~~~~~~~~i~ 227 (237)
..|..+ ..|.||.||.... =+|-|.++|+
T Consensus 64 qs~~~rv~rcecghsf~d~r-----~nwkl~a~i~ 93 (165)
T COG4647 64 QSAQKRVIRCECGHSFGDYR-----ENWKLHANIY 93 (165)
T ss_pred ecccccEEEEeccccccChh-----hCceeeeEEE
Confidence 444433 4799999996443 3555555553
No 39
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=45.19 E-value=41 Score=30.26 Aligned_cols=61 Identities=18% Similarity=0.159 Sum_probs=38.5
Q ss_pred HHHHHHHhhC--CCcEEEEEecCCCCceeEEEeecCCCCCCCeEEEeCC--eEeeec--CccccCCCCCCCCccc
Q psy7477 35 IKKLKEISTD--GSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSG--CKIPTL--SPYSTSSPSEKPVSAS 103 (237)
Q Consensus 35 ~~~i~~l~~~--~~~lRi~v~~gGCsG~~Y~l~~~~~~~~~D~~~~~~g--~~v~i~--~s~~~l~g~~IDy~~~ 103 (237)
.++|++.+.. ...++|.|..-| |+|++ |.+.|.||+.-= -+.|+| .++-=++.-.-||+..
T Consensus 148 r~~i~~~f~~~~~~~~~v~v~SFG---FKyGi-----P~DADlVFDVRfLPNP~y~peLRp~tG~d~~V~dYv~~ 214 (286)
T COG1660 148 RERIRTRFLGKEERTLTVTVESFG---FKYGI-----PIDADLVFDVRFLPNPHYDPELRPLTGLDKPVADYVMS 214 (286)
T ss_pred HHHHHHHHccCCCcceEEEEEecc---cccCC-----CCCcceEEEecccCCCccccccCcCCCCChhHHHHHHc
Confidence 4455555552 467999998875 88887 557799997642 345554 3443444455577655
No 40
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=39.50 E-value=64 Score=29.00 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=24.9
Q ss_pred HHHHHHHHHhhC-CCcEEEEEecCCCCceeEEEeecCCCCCCCeEEEeC
Q psy7477 33 SCIKKLKEISTD-GSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKS 80 (237)
Q Consensus 33 ~A~~~i~~l~~~-~~~lRi~v~~gGCsG~~Y~l~~~~~~~~~D~~~~~~ 80 (237)
..+++|.+++.. ...++|.+..-| |+|++ |.+.|.+|+.-
T Consensus 149 el~e~I~~~l~~~~~~~~i~~~SFg---~k~g~-----p~dad~vfDvR 189 (288)
T PRK05416 149 QLRERIRERFGGRERGLTVTVESFG---FKYGI-----PLDADLVFDVR 189 (288)
T ss_pred HHHHHHHHHHhcCCCceEEEEEeec---ccCCC-----CCCCCEEEEeC
Confidence 445555555543 235888887664 66664 45679998764
No 41
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=38.60 E-value=51 Score=29.75 Aligned_cols=37 Identities=24% Similarity=0.444 Sum_probs=22.9
Q ss_pred HHHHHHhhC--CCcEEEEEecCCCCceeEEEeecCCCCCCCeEEEeC
Q psy7477 36 KKLKEISTD--GSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKS 80 (237)
Q Consensus 36 ~~i~~l~~~--~~~lRi~v~~gGCsG~~Y~l~~~~~~~~~D~~~~~~ 80 (237)
++|.+++.. ...++|.+..-| |+|++ |.+.|.+|+.-
T Consensus 148 ~~i~~~~~~~~~~~l~v~i~SFG---fK~Gi-----P~dAD~VfDvR 186 (284)
T PF03668_consen 148 ERIRERFGGDKESRLTVTIQSFG---FKYGI-----PPDADLVFDVR 186 (284)
T ss_pred HHHHHHhccCCCCceEEEEEEec---cccCC-----CCCCCEEEEcC
Confidence 334444432 346888887764 66654 45679998764
No 42
>COG1909 Uncharacterized protein conserved in archaea [Function unknown]
Probab=35.88 E-value=51 Score=27.42 Aligned_cols=29 Identities=31% Similarity=0.385 Sum_probs=25.0
Q ss_pred ceeeCHHHHHHHHHHhhCCCcEEEEEecC
Q psy7477 27 DLVIHDSCIKKLKEISTDGSFLRIIVEGG 55 (237)
Q Consensus 27 ~itlT~~A~~~i~~l~~~~~~lRi~v~~g 55 (237)
.=+||..|++.|++.+.++...||+|.|-
T Consensus 88 PGtIt~el~~ai~~a~~~~k~~~I~V~GE 116 (167)
T COG1909 88 PGTITFELIKAIEKALEDGKRVRIFVDGE 116 (167)
T ss_pred CcEeEHHHHHHHHHHHhcCCcEEEEEeCh
Confidence 45799999999999999888899999753
No 43
>PF04019 DUF359: Protein of unknown function (DUF359); InterPro: IPR007164 This is family of archaebacterial proteins, which are about 170 amino acids in length. They have no known function. The most conserved portion of the protein contains the sequence GEEDL that may be important for its function.
Probab=35.47 E-value=54 Score=25.71 Aligned_cols=71 Identities=15% Similarity=0.158 Sum_probs=45.8
Q ss_pred eeeCHHHHHHHHHHhhCCCcEEEEEecCCCCceeEEEeecCCCCCCCeEEEeCCeEeeecCccccCCCCCCCCcccccc-
Q psy7477 28 LVIHDSCIKKLKEISTDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKIPTLSPYSTSSPSEKPVSASTLK- 106 (237)
Q Consensus 28 itlT~~A~~~i~~l~~~~~~lRi~v~~gGCsG~~Y~l~~~~~~~~~D~~~~~~g~~v~i~~s~~~l~g~~IDy~~~~~~- 106 (237)
=+||+.+.+.|++.+..+...+|.|.| ++|... +|.-+..=.|+.+=|=..+..
T Consensus 44 G~It~el~~ai~~a~~~~~~~~I~V~G-----------------EEDL~~--------lPail~aP~gs~V~YGQP~eGv 98 (121)
T PF04019_consen 44 GTITEELIEAIKKALESGKPVVIFVDG-----------------EEDLAV--------LPAILYAPEGSVVLYGQPGEGV 98 (121)
T ss_pred CcccHHHHHHHHHHHhCCCCEEEEEeC-----------------hHHHHH--------HHHHHhCCCCCEEEECCCCCeE
Confidence 369999999999999877778888864 334321 132222224455545444332
Q ss_pred -ceeechHHHHHHHHHhc
Q psy7477 107 -DLVIHDSCIKKLKEIST 123 (237)
Q Consensus 107 -~i~IT~~A~~~l~~~l~ 123 (237)
-+.+|+.+..+++++++
T Consensus 99 V~v~v~~~~k~~~~~ll~ 116 (121)
T PF04019_consen 99 VLVKVTEEAKRRARELLK 116 (121)
T ss_pred EEEEeCHHHHHHHHHHHH
Confidence 45788888888888875
No 44
>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c
Probab=29.23 E-value=75 Score=23.66 Aligned_cols=25 Identities=12% Similarity=0.186 Sum_probs=16.9
Q ss_pred HHHHHHHhhCCCcEEEEEecCCCCce
Q psy7477 35 IKKLKEISTDGSFLRIIVEGGGCSGF 60 (237)
Q Consensus 35 ~~~i~~l~~~~~~lRi~v~~gGCsG~ 60 (237)
.+.|++.+++. +|++.|...||-||
T Consensus 20 ~~al~~ei~~~-gl~v~v~~tGC~G~ 44 (92)
T cd03063 20 AEAIEAEAAAR-GLAATIVRNGSRGM 44 (92)
T ss_pred HHHHHHHHHHc-CCeEEEEEecCcee
Confidence 34444444443 34999999999996
No 45
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=29.09 E-value=37 Score=26.30 Aligned_cols=19 Identities=21% Similarity=0.419 Sum_probs=12.8
Q ss_pred cCCccccccCcEEEEEecC
Q psy7477 167 DQTSLEYVQGSVIEYHQEL 185 (237)
Q Consensus 167 d~~s~~~L~g~~IDy~e~~ 185 (237)
||.....|+|-||||-+..
T Consensus 45 ~P~e~~qldGyTvDy~~~~ 63 (117)
T cd01234 45 EPTEFIQLDGYTVDYMPES 63 (117)
T ss_pred CchhheeecceEEeccCCC
Confidence 4455667778888887653
No 46
>COG1909 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.66 E-value=74 Score=26.47 Aligned_cols=30 Identities=30% Similarity=0.366 Sum_probs=26.3
Q ss_pred cceeechHHHHHHHHHhcCCCceEEEEecC
Q psy7477 106 KDLVIHDSCIKKLKEISTDGSFLRIIVEGG 135 (237)
Q Consensus 106 ~~i~IT~~A~~~l~~~l~~~~~lRi~v~~~ 135 (237)
..=+||.+|.+.+++.+.+++..+|+|.|-
T Consensus 87 pPGtIt~el~~ai~~a~~~~k~~~I~V~GE 116 (167)
T COG1909 87 PPGTITFELIKAIEKALEDGKRVRIFVDGE 116 (167)
T ss_pred CCcEeEHHHHHHHHHHHhcCCcEEEEEeCh
Confidence 455799999999999999999999999873
No 47
>PF14620 YPEB: YpeB sporulation
Probab=26.38 E-value=5.3e+02 Score=23.95 Aligned_cols=157 Identities=15% Similarity=0.154 Sum_probs=81.4
Q ss_pred CCCcccccCCCC---CCCCCCCCCCCcceeeCHHHHHHHHHHhhCC--CcEEEEEecCCCCceeEEEeecCCCCCCC-eE
Q psy7477 3 QIPTVSPYSTSS---PSEKPVSASTLKDLVIHDSCIKKLKEISTDG--SFLRIIVEGGGCSGFQYKFELDTQVSDED-RV 76 (237)
Q Consensus 3 ~~~~~~~~~~~~---~~~~~~~~~~~~~itlT~~A~~~i~~l~~~~--~~lRi~v~~gGCsG~~Y~l~~~~~~~~~D-~~ 76 (237)
+-|++.+-...| .+..|...+. ..|+- +.|.+..++.+... ..+.+...+.|-.=..|.+.+.+...... ..
T Consensus 180 ~yp~l~ydGpfsd~~~~~~p~~l~g-~~Is~-eeA~~iak~fl~~~~~~~~~~~~~~~~~~~~~Ys~~~~~~~~~~~~~~ 257 (361)
T PF14620_consen 180 GYPELIYDGPFSDHLEKRTPKGLSG-KEISK-EEAKQIAKKFLGKPKNSSIKVTKNGKGGNIPSYSFSVSDKGRNNNRIY 257 (361)
T ss_pred cCCCcccCCcchhhhhhcccccCCC-CCcCH-HHHHHHHHHHhCCCCccceEeeccCCCCCCceEEEEEecCCCCCceEE
Confidence 346665522222 2333333332 34443 56777778888764 44555555555444677777755333332 43
Q ss_pred EE--e-CCeEeeecCccccCCCCCCCCccccccceeechHHHHHHHHHhcC-C--CceEEEEecCCCCcceeeEEecCCC
Q psy7477 77 YE--K-SGCKIPTLSPYSTSSPSEKPVSASTLKDLVIHDSCIKKLKEISTD-G--SFLRIIVEGGGCSGFQYKFELDTQV 150 (237)
Q Consensus 77 ~~--~-~g~~v~i~~s~~~l~g~~IDy~~~~~~~i~IT~~A~~~l~~~l~~-~--~~lRi~v~~~GCsG~~y~l~~~~~~ 150 (237)
++ . .|-.+++ +..-.+. ...|.+ ++|.++-+++|++ + ...-.+....+ =.+.|.|..
T Consensus 258 ~dVtkkGG~vi~~------~~~R~v~-----~~kis~-~eA~~~A~~fL~~~g~~~m~~t~~~~~~---n~~~f~fv~-- 320 (361)
T PF14620_consen 258 MDVTKKGGHVIWF------LNSRPVG-----KPKISL-EEAKNKAEEFLKKHGYKNMVPTYSEQYD---NIAVFNFVY-- 320 (361)
T ss_pred EEEEcCCCEEEEE------ECCCCCC-----CCCCCH-HHHHHHHHHHHHHhCCCccEEeeeeccC---cEEEEEEEE--
Confidence 33 2 3444444 1111111 334555 4566666677764 2 23333333333 144555553
Q ss_pred CCCCeEEEeCCeEEEEcCCccccccCcEEEEEe
Q psy7477 151 SDEDRVYEKSGCKVVIDQTSLEYVQGSVIEYHQ 183 (237)
Q Consensus 151 ~~~D~v~~~~Gi~v~id~~s~~~L~g~~IDy~e 183 (237)
..+++.+.-+.|+|-|+-. +|-.|-|..
T Consensus 321 ~q~gV~iYpD~IkVkVALD-----nGeIiG~~a 348 (361)
T PF14620_consen 321 KQNGVRIYPDKIKVKVALD-----NGEIIGFDA 348 (361)
T ss_pred eeCCEEECCCcEEEEEECC-----CCeEEEEec
Confidence 5788888889988877654 355565553
No 48
>PF04019 DUF359: Protein of unknown function (DUF359); InterPro: IPR007164 This is family of archaebacterial proteins, which are about 170 amino acids in length. They have no known function. The most conserved portion of the protein contains the sequence GEEDL that may be important for its function.
Probab=24.14 E-value=99 Score=24.25 Aligned_cols=30 Identities=23% Similarity=0.294 Sum_probs=25.5
Q ss_pred ccceeechHHHHHHHHHhcCCCceEEEEec
Q psy7477 105 LKDLVIHDSCIKKLKEISTDGSFLRIIVEG 134 (237)
Q Consensus 105 ~~~i~IT~~A~~~l~~~l~~~~~lRi~v~~ 134 (237)
+..=+||+++.+.|++.+..+...+|+|.|
T Consensus 41 NPpG~It~el~~ai~~a~~~~~~~~I~V~G 70 (121)
T PF04019_consen 41 NPPGTITEELIEAIKKALESGKPVVIFVDG 70 (121)
T ss_pred CCCCcccHHHHHHHHHHHhCCCCEEEEEeC
Confidence 345579999999999999888889999877
No 49
>PF11146 DUF2905: Protein of unknown function (DUF2905); InterPro: IPR021320 This is a family of bacterial proteins conserved of unknown function.
Probab=20.97 E-value=95 Score=21.66 Aligned_cols=17 Identities=6% Similarity=-0.142 Sum_probs=15.8
Q ss_pred CCCCeEEEeCCeEeeec
Q psy7477 71 SDEDRVYEKSGCKIPTL 87 (237)
Q Consensus 71 ~~~D~~~~~~g~~v~i~ 87 (237)
-|+|..++.+|.++|.|
T Consensus 30 LPGDi~i~~~~~~fyfP 46 (64)
T PF11146_consen 30 LPGDIRIRRGNFTFYFP 46 (64)
T ss_pred CCccEEEEECCEEEEEe
Confidence 48999999999999997
Done!