Query psy7477
Match_columns 237
No_of_seqs 264 out of 2135
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 19:19:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7477.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7477hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1r94_A Protein YFHF; tetrameri 100.0 2.1E-33 7.2E-38 219.2 11.6 108 106-214 1-111 (118)
2 1nwb_A Hypothetical protein AQ 100.0 2.8E-33 9.6E-38 220.3 7.6 107 105-212 7-117 (124)
3 1x0g_A ISCA; [2Fe-2S], biosynt 100.0 2E-33 6.8E-38 217.4 6.4 106 107-213 1-112 (112)
4 2d2a_A SUFA protein; iron-sulf 100.0 4.2E-32 1.4E-36 218.8 10.7 104 105-209 38-144 (145)
5 2apn_A Protein HI1723; HI1723 100.0 6.4E-32 2.2E-36 209.5 7.8 105 105-210 6-114 (114)
6 2k4z_A DSRR; ISCA/SUFA/HESB li 99.9 2.4E-23 8.2E-28 163.8 10.2 96 104-203 19-121 (125)
7 1nwb_A Hypothetical protein AQ 99.8 5.4E-22 1.8E-26 155.8 4.1 90 23-112 5-100 (124)
8 2d2a_A SUFA protein; iron-sulf 99.8 2E-21 6.8E-26 156.4 5.9 87 25-111 38-129 (145)
9 2apn_A Protein HI1723; HI1723 99.8 1.3E-21 4.6E-26 151.3 4.3 92 22-113 3-100 (114)
10 1r94_A Protein YFHF; tetrameri 99.8 4.7E-21 1.6E-25 149.2 6.5 86 26-111 1-91 (118)
11 1x0g_A ISCA; [2Fe-2S], biosynt 99.8 7.4E-21 2.5E-25 146.7 3.1 85 27-111 1-93 (112)
12 2k4z_A DSRR; ISCA/SUFA/HESB li 99.7 1.3E-17 4.3E-22 131.1 6.2 87 22-111 17-112 (125)
13 2p2e_A Putative Fe-S biosynthe 99.7 1.9E-17 6.4E-22 130.6 7.0 93 106-200 3-116 (128)
14 2qgo_A Putative Fe-S biosynthe 99.7 4.9E-17 1.7E-21 130.1 4.7 88 105-197 3-103 (141)
15 2qgo_A Putative Fe-S biosynthe 99.6 1.5E-17 5.1E-22 133.1 0.8 80 25-104 3-96 (141)
16 2p2e_A Putative Fe-S biosynthe 99.6 2.6E-15 8.8E-20 118.3 6.4 79 25-104 2-97 (128)
17 2k02_A Ferrous iron transport 21.4 1.2E+02 0.0041 21.2 4.2 31 27-57 25-56 (87)
No 1
>1r94_A Protein YFHF; tetrameric, beta barrel, iron-sulfur cluster protein, pseudo-symmetric motifs, metal transport; 2.30A {Escherichia coli} SCOP: b.124.1.1 PDB: 1r95_A 1s98_A
Probab=100.00 E-value=2.1e-33 Score=219.25 Aligned_cols=108 Identities=27% Similarity=0.498 Sum_probs=89.2
Q ss_pred cceeechHHHHHHHHHhcC---CCceEEEEecCCCCcceeeEEecCCCCCCCeEEEeCCeEEEEcCCccccccCcEEEEE
Q psy7477 106 KDLVIHDSCIKKLKEISTD---GSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIEYH 182 (237)
Q Consensus 106 ~~i~IT~~A~~~l~~~l~~---~~~lRi~v~~~GCsG~~y~l~~~~~~~~~D~v~~~~Gi~v~id~~s~~~L~g~~IDy~ 182 (237)
|+|+||++|+++|++++++ +.+|||+|+++||+|++|+|.+++++.++|.+++.+|++|+||+.+++||+|++|||+
T Consensus 1 M~I~iT~~A~~~l~~ll~~~~~~~~LRv~V~~gGCsG~~y~l~~~~~~~~~D~v~e~~Gv~v~vd~~s~~~L~g~~IDy~ 80 (118)
T 1r94_A 1 MSITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFV 80 (118)
T ss_dssp CCCEECHHHHHHHHHHHHHHCCCSEEEEEEEECSSSCEEEEEEEESSCCTTEEEEEETTEEEEEEGGGHHHHTTCEEEEE
T ss_pred CceEECHHHHHHHHHHHhhCCCCceEEEEEECCCCCCeEEEEEEccCCCCCceEEEECCEEEEEEHHHHHHhCCCEEEEE
Confidence 6899999999999999963 4789999999999999999999877889999999999999999999999999999999
Q ss_pred ecCccceeEEeeCCCCCCCCCCCCCCCCCCCc
Q psy7477 183 QELIRSAFQISNNPQVEQGNLTKGDHFISPSN 214 (237)
Q Consensus 183 e~~~g~gF~i~~nP~~~~~CgCG~Sf~~~~~~ 214 (237)
+++.+++|+| +|||++++||||+||++++.-
T Consensus 81 ~~~~g~gF~~-~NPna~~~CgCG~SF~~~~~~ 111 (118)
T 1r94_A 81 KEGLNEGFKF-TNPNVKDECGCGESFKLAAAL 111 (118)
T ss_dssp EETTEEEEEE-ECTTCCC--------------
T ss_pred cCCCcCceEE-eCCCCCCCCCCCCCcCCCCCc
Confidence 9999999996 999999999999999976643
No 2
>1nwb_A Hypothetical protein AQ_1857; QR6, structural genomics, protein structure initiative, NESG, reduced dimensionality PSI; NMR {Aquifex aeolicus} SCOP: b.124.1.1
Probab=99.98 E-value=2.8e-33 Score=220.34 Aligned_cols=107 Identities=32% Similarity=0.570 Sum_probs=86.0
Q ss_pred ccceeechHHHHHHHHHhcC----CCceEEEEecCCCCcceeeEEecCCCCCCCeEEEeCCeEEEEcCCccccccCcEEE
Q psy7477 105 LKDLVIHDSCIKKLKEISTD----GSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIE 180 (237)
Q Consensus 105 ~~~i~IT~~A~~~l~~~l~~----~~~lRi~v~~~GCsG~~y~l~~~~~~~~~D~v~~~~Gi~v~id~~s~~~L~g~~ID 180 (237)
.+||+||++|+++|+++++. +.+|||+|+++||+|++|+|.+++++.++|.+++.+|++|+||+.+++||+|++||
T Consensus 7 ~m~I~iT~~A~~~l~~ll~~~~~~~~~LRv~V~~gGCsG~~y~l~~~~~~~~~D~v~e~~Gv~v~VD~~s~~~L~G~~ID 86 (124)
T 1nwb_A 7 QFIFKVTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGVKVVIDPFSMPYVNGAELD 86 (124)
T ss_dssp CCCCEECHHHHHHHHHHHHTTTCSSCEEEECCCCCCTTCCCCCCCEECSCCSSCCCCCCSSSEEEECTTTGGGSTTCEEE
T ss_pred CceEEECHHHHHHHHHHHhhCCCCCceEEEEEEcCCCCCcEEEEEEccCCCCCceEEEeCCEEEEEehHHHHHhCCCEEE
Confidence 57899999999999999974 35899999999999999999999887899999999999999999999999999999
Q ss_pred EEecCccceeEEeeCCCCCCCCCCCCCCCCCC
Q psy7477 181 YHQELIRSAFQISNNPQVEQGNLTKGDHFISP 212 (237)
Q Consensus 181 y~e~~~g~gF~i~~nP~~~~~CgCG~Sf~~~~ 212 (237)
|++++.+++|+| +|||++++||||+||++.+
T Consensus 87 y~~~~~g~gF~~-~NPna~~~CgCG~SF~~~~ 117 (124)
T 1nwb_A 87 YVVDFMGGGFTI-RNPNATGSCGCGSSFSCGL 117 (124)
T ss_dssp EEEETTEEEEEE-ECC----------------
T ss_pred EEcCCCcceEEE-eCCCCCcCCCCCCCcCCCc
Confidence 999999999996 9999999999999998776
No 3
>1x0g_A ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domain swapping, Fe- S cluster, iron, iron-sulfur cluster protein, scaffold, sulfur; 2.50A {Thermosynechococcus elongatus}
Probab=99.98 E-value=2e-33 Score=217.39 Aligned_cols=106 Identities=24% Similarity=0.428 Sum_probs=97.4
Q ss_pred ceeechHHHHHHHHHhcCC------CceEEEEecCCCCcceeeEEecCCCCCCCeEEEeCCeEEEEcCCccccccCcEEE
Q psy7477 107 DLVIHDSCIKKLKEISTDG------SFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIE 180 (237)
Q Consensus 107 ~i~IT~~A~~~l~~~l~~~------~~lRi~v~~~GCsG~~y~l~~~~~~~~~D~v~~~~Gi~v~id~~s~~~L~g~~ID 180 (237)
||+||++|+++|++++++. .+|||+|+++||+|++|+|.+++++.++|.+++.+|++|+||+.+++||+|++||
T Consensus 1 mi~iT~~A~~~l~~ll~~~~~~~~~~~lRv~v~~gGCsG~~y~l~~~~~~~~~D~v~e~~Gv~v~vd~~s~~~l~g~~ID 80 (112)
T 1x0g_A 1 MVELTPAAIQELERLQTHGVRRGQAAILRIQVQPSECGDWRYDLALVAEPKPTDLLTQSQGWTIAIAAEAAELLRGLRVD 80 (112)
T ss_dssp CCEECHHHHHHTCCCC----------CEEEEEEEBSSSSEEEEEEECSSCCTTCEEECSSSCCEEECGGGHHHHTTCEEE
T ss_pred CeEECHHHHHHHHHHHhhccCCCCceEEEEEEEcCCCCCeEEEEEECcCCCCCCEEEEeCCEEEEEeHHHHHHhCCCEEE
Confidence 6999999999999998632 3799999999999999999999887899999999999999999999999999999
Q ss_pred EEecCccceeEEeeCCCCCCCCCCCCCCCCCCC
Q psy7477 181 YHQELIRSAFQISNNPQVEQGNLTKGDHFISPS 213 (237)
Q Consensus 181 y~e~~~g~gF~i~~nP~~~~~CgCG~Sf~~~~~ 213 (237)
|++++.+++|+| +|||++++||||+||+++.|
T Consensus 81 y~~~~~g~gF~~-~nPna~~~CgCG~SF~~~~~ 112 (112)
T 1x0g_A 81 YIEDLMGGAFRF-HNPNASQTCGCGMAFRVSRS 112 (112)
T ss_dssp EEEETTEEEEEE-ECTTCSEECSSSSEEECCCC
T ss_pred EEecCCCCEEEE-eCCCCCcCCCCCCccccCCC
Confidence 999999999996 99999999999999987754
No 4
>2d2a_A SUFA protein; iron-sulfur cluster, iron, ISCA, YADR, metal transport; 2.70A {Escherichia coli}
Probab=99.97 E-value=4.2e-32 Score=218.81 Aligned_cols=104 Identities=17% Similarity=0.412 Sum_probs=98.4
Q ss_pred ccceeechHHHHHHHHHhcC---CCceEEEEecCCCCcceeeEEecCCCCCCCeEEEeCCeEEEEcCCccccccCcEEEE
Q psy7477 105 LKDLVIHDSCIKKLKEISTD---GSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIEY 181 (237)
Q Consensus 105 ~~~i~IT~~A~~~l~~~l~~---~~~lRi~v~~~GCsG~~y~l~~~~~~~~~D~v~~~~Gi~v~id~~s~~~L~g~~IDy 181 (237)
+|.|+||++|+++|++++++ +.+|||+|+++||+|++|+|.+++++.++|.+++.+|++|+||+.+++||+|++|||
T Consensus 38 ~m~ItiTe~Aa~~lk~ll~~~~~~~~LRv~V~~gGCsG~~Y~l~l~~~~~~~D~v~e~~Gv~v~VD~~s~~~L~G~~IDy 117 (145)
T 2d2a_A 38 WQGLTLTPAAAIHIRELVAKQPGMVGVRLGVKQTGCAGFGYVLDSVSEPDKDDLLFEHDGAKLFVPLQAMPFIDGTEVDF 117 (145)
T ss_dssp CCCCEECHHHHHHHHHHHHHSTTCCEEEEEEEEETTTEEEEEEEEESSCCTTEEEEEETTEEEEEEGGGHHHHTTCEEEE
T ss_pred cceEEECHHHHHHHHHHHhcCCCCceEEEEEECCCCCCcEEEEEECcCCCCCCeEEEECCEEEEEeHHHHHhhCCCEEEE
Confidence 57799999999999999963 368999999999999999999998788999999999999999999999999999999
Q ss_pred EecCccceeEEeeCCCCCCCCCCCCCCC
Q psy7477 182 HQELIRSAFQISNNPQVEQGNLTKGDHF 209 (237)
Q Consensus 182 ~e~~~g~gF~i~~nP~~~~~CgCG~Sf~ 209 (237)
++++.+++|+| +|||++++||||+||+
T Consensus 118 ~e~l~g~gF~f-~NPna~~~CGCG~SF~ 144 (145)
T 2d2a_A 118 VREGLNQIFKF-HNPKAQNECGCGESFG 144 (145)
T ss_dssp EEETTEEEEEE-ECTTTCSCCCCBCEEE
T ss_pred EcCCCcceEEE-eCCCCCcccCCCCCcc
Confidence 99999999996 9999999999999995
No 5
>2apn_A Protein HI1723; HI1723 solution structure, structural genomics, structure 2 function project, S2F, unknown function; NMR {Haemophilus influenzae}
Probab=99.97 E-value=6.4e-32 Score=209.46 Aligned_cols=105 Identities=37% Similarity=0.634 Sum_probs=98.2
Q ss_pred ccceeechHHHHHHHHHhcC----CCceEEEEecCCCCcceeeEEecCCCCCCCeEEEeCCeEEEEcCCccccccCcEEE
Q psy7477 105 LKDLVIHDSCIKKLKEISTD----GSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIE 180 (237)
Q Consensus 105 ~~~i~IT~~A~~~l~~~l~~----~~~lRi~v~~~GCsG~~y~l~~~~~~~~~D~v~~~~Gi~v~id~~s~~~L~g~~ID 180 (237)
.++|+||++|+++|++++++ +.+|||+++++||+|++|+|.+++++.++|.+++.+|++|+||+.+++||+|++||
T Consensus 6 ~~~i~iT~~A~~~i~~l~~~~~~~~~~lRi~v~~gGCsG~~y~l~~~~~~~~~D~v~e~~Gv~v~id~~s~~~l~g~~ID 85 (114)
T 2apn_A 6 AVPLTFTDAAANKVKSLISEEENTDLKLRVYITGGGCSGFQYGFTFDEKVNDGDLTIEKSGVQLVIDPMSLQYLIGGTVD 85 (114)
T ss_dssp CCSCEECSHHHHHHHHHHHHHTCSSCEEEECCCCSSSSCSCCCEEECCSCCSSCEEEECSSSEEEECHHHHHHHTTCEEE
T ss_pred cCcEEECHHHHHHHHHHHHhCCCCCceEEEEEeCCCCCCcEEEEEECcCCCCCCcEEEECCEEEEEehHHHHHhCCCEEE
Confidence 35799999999999999962 36899999999999999999999877789999999999999999999999999999
Q ss_pred EEecCccceeEEeeCCCCCCCCCCCCCCCC
Q psy7477 181 YHQELIRSAFQISNNPQVEQGNLTKGDHFI 210 (237)
Q Consensus 181 y~e~~~g~gF~i~~nP~~~~~CgCG~Sf~~ 210 (237)
|++++.+++|+| +|||++++||||+||++
T Consensus 86 y~~~~~g~~F~~-~nPna~~~CgCG~SF~~ 114 (114)
T 2apn_A 86 YTEGLEGSRFTV-NNPNATSTCGCGSSFSI 114 (114)
T ss_dssp EECSSSCCEEEE-ECHHHHCCCCCCCCSCC
T ss_pred EEcCCCcceEEE-eCCCCCcCCCCCCCccC
Confidence 999999999996 99999999999999963
No 6
>2k4z_A DSRR; ISCA/SUFA/HESB like fold, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Allochromatium vinosum}
Probab=99.89 E-value=2.4e-23 Score=163.80 Aligned_cols=96 Identities=16% Similarity=0.293 Sum_probs=88.7
Q ss_pred cccceeechHHHHHHHHHhcC----CCceEEEEe--cCCCCcceeeEEecCCCCCCCeEEEeCCeEEEEcCCccccccCc
Q psy7477 104 TLKDLVIHDSCIKKLKEISTD----GSFLRIIVE--GGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQGS 177 (237)
Q Consensus 104 ~~~~i~IT~~A~~~l~~~l~~----~~~lRi~v~--~~GCsG~~y~l~~~~~~~~~D~v~~~~Gi~v~id~~s~~~L~g~ 177 (237)
..++|+||++|+++|++++++ +.+|||+|+ ++| |++|+|.++++ .++|.+++.+|++|+||+.+++||+|+
T Consensus 19 ~~m~ItiT~~Aa~~ik~ll~~~~~~~~~LRv~V~~~~gG--G~~Y~l~l~~~-~~~D~v~e~~Gv~v~VD~~s~~~L~G~ 95 (125)
T 2k4z_A 19 SHMMFKLTPAAAEQVLKAAKQGGTEGMCLRLAAGRNPDG--SIDYRMGFDDL-TEDDIRLTSEGVEIVIAPDYVSLLDQT 95 (125)
T ss_dssp CSSCEEECHHHHHHHHHHHHHSSSTTCEEEEEEEECTTS--CEEEEEEEECC-CSSSCEEECSSCEEECCTTTHHHHTTE
T ss_pred CCCEEEECHHHHHHHHHHHhhCCCCCceEEEEEEecCCC--CEEEEEEecCC-CCCceEEEECCEEEEEeHHHHHhhCCC
Confidence 468999999999999999963 268999999 888 99999999987 899999999999999999999999999
Q ss_pred EEEEEe-cCccceeEEeeCCCCCCCCC
Q psy7477 178 VIEYHQ-ELIRSAFQISNNPQVEQGNL 203 (237)
Q Consensus 178 ~IDy~e-~~~g~gF~i~~nP~~~~~Cg 203 (237)
+|||++ ++.+++|+| +|||+++.|.
T Consensus 96 ~IDy~~~~l~g~gF~~-~NPna~~~~p 121 (125)
T 2k4z_A 96 TLDYVELEPGQFHFIF-LNPRDPTYRP 121 (125)
T ss_dssp EEEEEEEETTEEEEEE-ECSSSCSSCC
T ss_pred EEEEEeCCCCcCeEEE-CCCCCCccCC
Confidence 999999 999999996 9999998764
No 7
>1nwb_A Hypothetical protein AQ_1857; QR6, structural genomics, protein structure initiative, NESG, reduced dimensionality PSI; NMR {Aquifex aeolicus} SCOP: b.124.1.1
Probab=99.84 E-value=5.4e-22 Score=155.83 Aligned_cols=90 Identities=26% Similarity=0.430 Sum_probs=79.5
Q ss_pred CCCcceeeCHHHHHHHHHHhhCC----CcEEEEEecCCCCceeEEEeecCCCCCCCeEEEeCCeEeee-cCccccCCCCC
Q psy7477 23 STLKDLVIHDSCIKKLKEISTDG----SFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKIPT-LSPYSTSSPSE 97 (237)
Q Consensus 23 ~~~~~itlT~~A~~~i~~l~~~~----~~lRi~v~~gGCsG~~Y~l~~~~~~~~~D~~~~~~g~~v~i-~~s~~~l~g~~ 97 (237)
..++||+|||+|+++|++++++. .+|||+|+++||+||+|.|.|++++.++|.+++.+|++|+| +.+++||.|++
T Consensus 5 ~~~m~I~iT~~A~~~l~~ll~~~~~~~~~LRv~V~~gGCsG~~y~l~~~~~~~~~D~v~e~~Gv~v~VD~~s~~~L~G~~ 84 (124)
T 1nwb_A 5 AQQFIFKVTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGVKVVIDPFSMPYVNGAE 84 (124)
T ss_dssp CCCCCCEECHHHHHHHHHHHHTTTCSSCEEEECCCCCCTTCCCCCCCEECSCCSSCCCCCCSSSEEEECTTTGGGSTTCE
T ss_pred ccCceEEECHHHHHHHHHHHhhCCCCCceEEEEEEcCCCCCcEEEEEEccCCCCCceEEEeCCEEEEEehHHHHHhCCCE
Confidence 34578999999999999999752 47999999999999999999999888899999999999999 49999999999
Q ss_pred CCCcccc-ccceeech
Q psy7477 98 KPVSAST-LKDLVIHD 112 (237)
Q Consensus 98 IDy~~~~-~~~i~IT~ 112 (237)
|||.++. ...+.+..
T Consensus 85 IDy~~~~~g~gF~~~N 100 (124)
T 1nwb_A 85 LDYVVDFMGGGFTIRN 100 (124)
T ss_dssp EEEEEETTEEEEEEEC
T ss_pred EEEEcCCCcceEEEeC
Confidence 9999874 45676653
No 8
>2d2a_A SUFA protein; iron-sulfur cluster, iron, ISCA, YADR, metal transport; 2.70A {Escherichia coli}
Probab=99.83 E-value=2e-21 Score=156.43 Aligned_cols=87 Identities=18% Similarity=0.322 Sum_probs=78.4
Q ss_pred CcceeeCHHHHHHHHHHhhC---CCcEEEEEecCCCCceeEEEeecCCCCCCCeEEEeCCeEeee-cCccccCCCCCCCC
Q psy7477 25 LKDLVIHDSCIKKLKEISTD---GSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKIPT-LSPYSTSSPSEKPV 100 (237)
Q Consensus 25 ~~~itlT~~A~~~i~~l~~~---~~~lRi~v~~gGCsG~~Y~l~~~~~~~~~D~~~~~~g~~v~i-~~s~~~l~g~~IDy 100 (237)
++.|+|||+|+++|++++++ +.+|||+|+++||+||+|.|.|++++.++|.+++.+|++|+| +.+++||.|++|||
T Consensus 38 ~m~ItiTe~Aa~~lk~ll~~~~~~~~LRv~V~~gGCsG~~Y~l~l~~~~~~~D~v~e~~Gv~v~VD~~s~~~L~G~~IDy 117 (145)
T 2d2a_A 38 WQGLTLTPAAAIHIRELVAKQPGMVGVRLGVKQTGCAGFGYVLDSVSEPDKDDLLFEHDGAKLFVPLQAMPFIDGTEVDF 117 (145)
T ss_dssp CCCCEECHHHHHHHHHHHHHSTTCCEEEEEEEEETTTEEEEEEEEESSCCTTEEEEEETTEEEEEEGGGHHHHTTCEEEE
T ss_pred cceEEECHHHHHHHHHHHhcCCCCceEEEEEECCCCCCcEEEEEECcCCCCCCeEEEECCEEEEEeHHHHHhhCCCEEEE
Confidence 67799999999999999974 357999999999999999999998888999999999999999 59999999999999
Q ss_pred cccc-ccceeec
Q psy7477 101 SAST-LKDLVIH 111 (237)
Q Consensus 101 ~~~~-~~~i~IT 111 (237)
.++. ...+.+.
T Consensus 118 ~e~l~g~gF~f~ 129 (145)
T 2d2a_A 118 VREGLNQIFKFH 129 (145)
T ss_dssp EEETTEEEEEEE
T ss_pred EcCCCcceEEEe
Confidence 9874 4567664
No 9
>2apn_A Protein HI1723; HI1723 solution structure, structural genomics, structure 2 function project, S2F, unknown function; NMR {Haemophilus influenzae}
Probab=99.83 E-value=1.3e-21 Score=151.25 Aligned_cols=92 Identities=26% Similarity=0.428 Sum_probs=81.1
Q ss_pred CCCCcceeeCHHHHHHHHHHhhC----CCcEEEEEecCCCCceeEEEeecCCCCCCCeEEEeCCeEeeec-CccccCCCC
Q psy7477 22 ASTLKDLVIHDSCIKKLKEISTD----GSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKIPTL-SPYSTSSPS 96 (237)
Q Consensus 22 ~~~~~~itlT~~A~~~i~~l~~~----~~~lRi~v~~gGCsG~~Y~l~~~~~~~~~D~~~~~~g~~v~i~-~s~~~l~g~ 96 (237)
+.+.++|+|||+|+++|++++++ +.+|||+|+++||+||+|.|.|++++.++|.+++.+|++|||+ .+++||.|+
T Consensus 3 ~~~~~~i~iT~~A~~~i~~l~~~~~~~~~~lRi~v~~gGCsG~~y~l~~~~~~~~~D~v~e~~Gv~v~id~~s~~~l~g~ 82 (114)
T 2apn_A 3 DDMAVPLTFTDAAANKVKSLISEEENTDLKLRVYITGGGCSGFQYGFTFDEKVNDGDLTIEKSGVQLVIDPMSLQYLIGG 82 (114)
T ss_dssp SSSCCSCEECSHHHHHHHHHHHHHTCSSCEEEECCCCSSSSCSCCCEEECCSCCSSCEEEECSSSEEEECHHHHHHHTTC
T ss_pred ccCcCcEEECHHHHHHHHHHHHhCCCCCceEEEEEeCCCCCCcEEEEEECcCCCCCCcEEEECCEEEEEehHHHHHhCCC
Confidence 45567799999999999999964 3589999999999999999999988788999999999999995 999999999
Q ss_pred CCCCcccc-ccceeechH
Q psy7477 97 EKPVSAST-LKDLVIHDS 113 (237)
Q Consensus 97 ~IDy~~~~-~~~i~IT~~ 113 (237)
+|||.++. ...+.+...
T Consensus 83 ~IDy~~~~~g~~F~~~nP 100 (114)
T 2apn_A 83 TVDYTEGLEGSRFTVNNP 100 (114)
T ss_dssp EEEEECSSSCCEEEEECH
T ss_pred EEEEEcCCCcceEEEeCC
Confidence 99999884 467777543
No 10
>1r94_A Protein YFHF; tetrameric, beta barrel, iron-sulfur cluster protein, pseudo-symmetric motifs, metal transport; 2.30A {Escherichia coli} SCOP: b.124.1.1 PDB: 1r95_A 1s98_A
Probab=99.83 E-value=4.7e-21 Score=149.22 Aligned_cols=86 Identities=21% Similarity=0.328 Sum_probs=77.1
Q ss_pred cceeeCHHHHHHHHHHhhC---CCcEEEEEecCCCCceeEEEeecCCCCCCCeEEEeCCeEeee-cCccccCCCCCCCCc
Q psy7477 26 KDLVIHDSCIKKLKEISTD---GSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKIPT-LSPYSTSSPSEKPVS 101 (237)
Q Consensus 26 ~~itlT~~A~~~i~~l~~~---~~~lRi~v~~gGCsG~~Y~l~~~~~~~~~D~~~~~~g~~v~i-~~s~~~l~g~~IDy~ 101 (237)
|+|+|||+|+++|++++++ +.+|||+|+++||+||+|.|.|++++.++|.+++.+|++|+| +.+++||.|++|||.
T Consensus 1 M~I~iT~~A~~~l~~ll~~~~~~~~LRv~V~~gGCsG~~y~l~~~~~~~~~D~v~e~~Gv~v~vd~~s~~~L~g~~IDy~ 80 (118)
T 1r94_A 1 MSITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFV 80 (118)
T ss_dssp CCCEECHHHHHHHHHHHHHHCCCSEEEEEEEECSSSCEEEEEEEESSCCTTEEEEEETTEEEEEEGGGHHHHTTCEEEEE
T ss_pred CceEECHHHHHHHHHHHhhCCCCceEEEEEECCCCCCeEEEEEEccCCCCCceEEEECCEEEEEEHHHHHHhCCCEEEEE
Confidence 5799999999999999964 367999999999999999999988888999999999999999 599999999999999
Q ss_pred ccc-ccceeec
Q psy7477 102 AST-LKDLVIH 111 (237)
Q Consensus 102 ~~~-~~~i~IT 111 (237)
++. ...+++.
T Consensus 81 ~~~~g~gF~~~ 91 (118)
T 1r94_A 81 KEGLNEGFKFT 91 (118)
T ss_dssp EETTEEEEEEE
T ss_pred cCCCcCceEEe
Confidence 874 3466664
No 11
>1x0g_A ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domain swapping, Fe- S cluster, iron, iron-sulfur cluster protein, scaffold, sulfur; 2.50A {Thermosynechococcus elongatus}
Probab=99.80 E-value=7.4e-21 Score=146.70 Aligned_cols=85 Identities=18% Similarity=0.271 Sum_probs=74.4
Q ss_pred ceeeCHHHHHHHHHHhhCC------CcEEEEEecCCCCceeEEEeecCCCCCCCeEEEeCCeEeee-cCccccCCCCCCC
Q psy7477 27 DLVIHDSCIKKLKEISTDG------SFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKIPT-LSPYSTSSPSEKP 99 (237)
Q Consensus 27 ~itlT~~A~~~i~~l~~~~------~~lRi~v~~gGCsG~~Y~l~~~~~~~~~D~~~~~~g~~v~i-~~s~~~l~g~~ID 99 (237)
||+|||+|+++|+++++++ .+|||+|+++||+||+|.|.|++++.++|.+++.+|++|+| +.+++||.|++||
T Consensus 1 mi~iT~~A~~~l~~ll~~~~~~~~~~~lRv~v~~gGCsG~~y~l~~~~~~~~~D~v~e~~Gv~v~vd~~s~~~l~g~~ID 80 (112)
T 1x0g_A 1 MVELTPAAIQELERLQTHGVRRGQAAILRIQVQPSECGDWRYDLALVAEPKPTDLLTQSQGWTIAIAAEAAELLRGLRVD 80 (112)
T ss_dssp CCEECHHHHHHTCCCC----------CEEEEEEEBSSSSEEEEEEECSSCCTTCEEECSSSCCEEECGGGHHHHTTCEEE
T ss_pred CeEECHHHHHHHHHHHhhccCCCCceEEEEEEEcCCCCCeEEEEEECcCCCCCCEEEEeCCEEEEEeHHHHHHhCCCEEE
Confidence 6999999999999998643 37999999999999999999999888999999999999999 5999999999999
Q ss_pred Ccccc-ccceeec
Q psy7477 100 VSAST-LKDLVIH 111 (237)
Q Consensus 100 y~~~~-~~~i~IT 111 (237)
|.++. ...+.+.
T Consensus 81 y~~~~~g~gF~~~ 93 (112)
T 1x0g_A 81 YIEDLMGGAFRFH 93 (112)
T ss_dssp EEEETTEEEEEEE
T ss_pred EEecCCCCEEEEe
Confidence 99874 4567664
No 12
>2k4z_A DSRR; ISCA/SUFA/HESB like fold, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Allochromatium vinosum}
Probab=99.70 E-value=1.3e-17 Score=131.09 Aligned_cols=87 Identities=11% Similarity=0.188 Sum_probs=75.5
Q ss_pred CCCCcceeeCHHHHHHHHHHhhC----CCcEEEEEe--cCCCCceeEEEeecCCCCCCCeEEEeCCeEeeec-CccccCC
Q psy7477 22 ASTLKDLVIHDSCIKKLKEISTD----GSFLRIIVE--GGGCSGFQYKFELDTQVSDEDRVYEKSGCKIPTL-SPYSTSS 94 (237)
Q Consensus 22 ~~~~~~itlT~~A~~~i~~l~~~----~~~lRi~v~--~gGCsG~~Y~l~~~~~~~~~D~~~~~~g~~v~i~-~s~~~l~ 94 (237)
....++|+||++|+++|++++++ +.+|||+|+ ++| ||+|.|.|+++ .++|.+++.+|++|+|+ .+++||+
T Consensus 17 ~~~~m~ItiT~~Aa~~ik~ll~~~~~~~~~LRv~V~~~~gG--G~~Y~l~l~~~-~~~D~v~e~~Gv~v~VD~~s~~~L~ 93 (125)
T 2k4z_A 17 RGSHMMFKLTPAAAEQVLKAAKQGGTEGMCLRLAAGRNPDG--SIDYRMGFDDL-TEDDIRLTSEGVEIVIAPDYVSLLD 93 (125)
T ss_dssp CCCSSCEEECHHHHHHHHHHHHHSSSTTCEEEEEEEECTTS--CEEEEEEEECC-CSSSCEEECSSCEEECCTTTHHHHT
T ss_pred cCCCCEEEECHHHHHHHHHHHhhCCCCCceEEEEEEecCCC--CEEEEEEecCC-CCCceEEEECCEEEEEeHHHHHhhC
Confidence 34568899999999999999974 257999999 889 99999999987 88999999999999994 9999999
Q ss_pred CCCCCCcc-cc-ccceeec
Q psy7477 95 PSEKPVSA-ST-LKDLVIH 111 (237)
Q Consensus 95 g~~IDy~~-~~-~~~i~IT 111 (237)
|++|||.+ +. ...+.+.
T Consensus 94 G~~IDy~~~~l~g~gF~~~ 112 (125)
T 2k4z_A 94 QTTLDYVELEPGQFHFIFL 112 (125)
T ss_dssp TEEEEEEEEETTEEEEEEE
T ss_pred CCEEEEEeCCCCcCeEEEC
Confidence 99999998 53 3455554
No 13
>2p2e_A Putative Fe-S biosynthesis protein; hypothetical protein, beta-barrel, 10399L structural genomics, protein structure initiative, PSI-2; 2.48A {Lactobacillus salivarius} SCOP: b.124.1.1
Probab=99.70 E-value=1.9e-17 Score=130.60 Aligned_cols=93 Identities=17% Similarity=0.190 Sum_probs=82.8
Q ss_pred cceeechHHHHHHHHHhcCC---CceEEEEecC-------CCCc-ceeeEEecCCCCC----CCeEEEeCCeEEEEcCCc
Q psy7477 106 KDLVIHDSCIKKLKEISTDG---SFLRIIVEGG-------GCSG-FQYKFELDTQVSD----EDRVYEKSGCKVVIDQTS 170 (237)
Q Consensus 106 ~~i~IT~~A~~~l~~~l~~~---~~lRi~v~~~-------GCsG-~~y~l~~~~~~~~----~D~v~~~~Gi~v~id~~s 170 (237)
|.|++|++|+++|++++++. .+||+. +++ ||+| ..|.|.+++++.+ .|.+++.+|++|+||+.+
T Consensus 3 M~ItlT~~A~~~l~~~l~~~~~~l~Lr~~-dg~g~y~k~ggCsg~~~Y~l~~v~~~~~~~~~~D~~~e~~g~~v~vd~~s 81 (128)
T 2p2e_A 3 LKITVTDDAAKKLQRYTDDSNAVLLLDFD-DGVGALSKVGVCSLNSDFRILVVSKDMDYKKDYNEVIDSNIGKFYYKGYS 81 (128)
T ss_dssp CEEEECHHHHHHHHHHHTCTTEEEEEEEC-SSCSGGGGSSCCCCSCCEEEEEEETTSSCTTTSCEEEEETTSCEEECGGG
T ss_pred cEEEECHHHHHHHHHHHhcCCceEEEEEe-CCCCccccCCCCCCCCEEEEEEeccCCCCCCCCCEEEEeCCEEEEECcch
Confidence 56999999999999999753 468888 666 7999 6999999887777 899999999999999999
Q ss_pred cccccC-cEEEEEecC----ccce-eEEeeCCCCCC
Q psy7477 171 LEYVQG-SVIEYHQEL----IRSA-FQISNNPQVEQ 200 (237)
Q Consensus 171 ~~~L~g-~~IDy~e~~----~g~g-F~i~~nP~~~~ 200 (237)
+.||+| ++|||+++. .+++ |.| .|||++.
T Consensus 82 ~~~ldgg~~iDy~~~~~~l~L~s~~f~~-~NPN~~~ 116 (128)
T 2p2e_A 82 KMYMDDNMKISLNTNNSLLRLTGDNSGE-LMPALSI 116 (128)
T ss_dssp GGGSCSEEEEEECSSSSCEEEEETTTEE-EEEEECE
T ss_pred HHhhCCCeEEEEeCCCceEEecCCccEE-ECCCCee
Confidence 999996 999999998 8899 996 8999864
No 14
>2qgo_A Putative Fe-S biosynthesis protein; PSI-2, NYSGXRC, 10399G, Fe-S cluster protein, structural GEN protein structure initiative; 2.04A {Lactobacillus acidophilus}
Probab=99.65 E-value=4.9e-17 Score=130.09 Aligned_cols=88 Identities=16% Similarity=0.323 Sum_probs=69.4
Q ss_pred ccceeechHHHHHHHHHhcCC--Cce-------EEEEecCCCC-cceeeEEecCCCCCC-CeEEEeC-CeEEEEcCCccc
Q psy7477 105 LKDLVIHDSCIKKLKEISTDG--SFL-------RIIVEGGGCS-GFQYKFELDTQVSDE-DRVYEKS-GCKVVIDQTSLE 172 (237)
Q Consensus 105 ~~~i~IT~~A~~~l~~~l~~~--~~l-------Ri~v~~~GCs-G~~y~l~~~~~~~~~-D~v~~~~-Gi~v~id~~s~~ 172 (237)
+|.|+||++|++||+++++.. .+| |+.+.++||+ |++|.|.+++++.++ |.+++.+ |++|+||+.++|
T Consensus 3 ~M~ItlTd~Aa~~ik~~l~~~~~l~L~~~Dgv~r~~v~gGGCSiG~~Y~l~~~~e~~~dyD~~~e~~gGv~v~Vd~~sl~ 82 (141)
T 2qgo_A 3 LLNIKFTDNAVDYLKRREILDKILILITDDGGGKYSIQGGSCSMGAHFSIIWLDKVDPDYPVKIANEQNVKIYTSDFDKT 82 (141)
T ss_dssp -CBEEECHHHHHHHHHTTCTTSEEEEEECSSCSTTCC---------CEEEEEESSCCTTCCEECBCSSCCEEEECHHHHT
T ss_pred ceEEEECHHHHHHHHHHHhhccceeeecCCCceEEEEeCccCCCCCEEEEEEeecCCCCCCEEEEeCCCEEEEECchHHH
Confidence 467999999999999999753 567 9999999999 999999999888889 9999999 599999999999
Q ss_pred ccc-CcEEEEEecCccceeEEeeCCC
Q psy7477 173 YVQ-GSVIEYHQELIRSAFQISNNPQ 197 (237)
Q Consensus 173 ~L~-g~~IDy~e~~~g~gF~i~~nP~ 197 (237)
||+ |++|||+++ .|.+ ++|.
T Consensus 83 yLd~G~~IDy~~~----~l~L-ks~s 103 (141)
T 2qgo_A 83 MLGPNMVMDYNAG----SLSL-SSDE 103 (141)
T ss_dssp TSCSSEEEEEETT----EEEE-EETT
T ss_pred HhcCCCEEeEECC----EEEE-cCCC
Confidence 999 999999965 6765 5543
No 15
>2qgo_A Putative Fe-S biosynthesis protein; PSI-2, NYSGXRC, 10399G, Fe-S cluster protein, structural GEN protein structure initiative; 2.04A {Lactobacillus acidophilus}
Probab=99.65 E-value=1.5e-17 Score=133.12 Aligned_cols=80 Identities=19% Similarity=0.217 Sum_probs=64.5
Q ss_pred CcceeeCHHHHHHHHHHhhCC--CcE-------EEEEecCCCC-ceeEEEeecCCCCCC-CeEEEeC-CeEeee-cCccc
Q psy7477 25 LKDLVIHDSCIKKLKEISTDG--SFL-------RIIVEGGGCS-GFQYKFELDTQVSDE-DRVYEKS-GCKIPT-LSPYS 91 (237)
Q Consensus 25 ~~~itlT~~A~~~i~~l~~~~--~~l-------Ri~v~~gGCs-G~~Y~l~~~~~~~~~-D~~~~~~-g~~v~i-~~s~~ 91 (237)
||.|+||++|+++|++++..+ .+| |+.|++|||+ |++|.|.|++++.++ |.+++.+ |++||| +.+++
T Consensus 3 ~M~ItlTd~Aa~~ik~~l~~~~~l~L~~~Dgv~r~~v~gGGCSiG~~Y~l~~~~e~~~dyD~~~e~~gGv~v~Vd~~sl~ 82 (141)
T 2qgo_A 3 LLNIKFTDNAVDYLKRREILDKILILITDDGGGKYSIQGGSCSMGAHFSIIWLDKVDPDYPVKIANEQNVKIYTSDFDKT 82 (141)
T ss_dssp -CBEEECHHHHHHHHHTTCTTSEEEEEECSSCSTTCC---------CEEEEEESSCCTTCCEECBCSSCCEEEECHHHHT
T ss_pred ceEEEECHHHHHHHHHHHhhccceeeecCCCceEEEEeCccCCCCCEEEEEEeecCCCCCCEEEEeCCCEEEEECchHHH
Confidence 577999999999999999864 468 9999999999 999999999988888 9999999 599999 59999
Q ss_pred cCC-CCCCCCcccc
Q psy7477 92 TSS-PSEKPVSAST 104 (237)
Q Consensus 92 ~l~-g~~IDy~~~~ 104 (237)
||+ |++|||.+++
T Consensus 83 yLd~G~~IDy~~~~ 96 (141)
T 2qgo_A 83 MLGPNMVMDYNAGS 96 (141)
T ss_dssp TSCSSEEEEEETTE
T ss_pred HhcCCCEEeEECCE
Confidence 999 9999999763
No 16
>2p2e_A Putative Fe-S biosynthesis protein; hypothetical protein, beta-barrel, 10399L structural genomics, protein structure initiative, PSI-2; 2.48A {Lactobacillus salivarius} SCOP: b.124.1.1
Probab=99.57 E-value=2.6e-15 Score=118.32 Aligned_cols=79 Identities=15% Similarity=0.142 Sum_probs=69.4
Q ss_pred CcceeeCHHHHHHHHHHhhCC---CcEEEEEecC-------CCCc-eeEEEeecCCCCC----CCeEEEeCCeEeee-cC
Q psy7477 25 LKDLVIHDSCIKKLKEISTDG---SFLRIIVEGG-------GCSG-FQYKFELDTQVSD----EDRVYEKSGCKIPT-LS 88 (237)
Q Consensus 25 ~~~itlT~~A~~~i~~l~~~~---~~lRi~v~~g-------GCsG-~~Y~l~~~~~~~~----~D~~~~~~g~~v~i-~~ 88 (237)
.|.|+|||+|+++|++++++. .+||+. +++ ||+| +.|.|.|++++.+ +|.+++.+|++||| +.
T Consensus 2 ~M~ItlT~~A~~~l~~~l~~~~~~l~Lr~~-dg~g~y~k~ggCsg~~~Y~l~~v~~~~~~~~~~D~~~e~~g~~v~vd~~ 80 (128)
T 2p2e_A 2 SLKITVTDDAAKKLQRYTDDSNAVLLLDFD-DGVGALSKVGVCSLNSDFRILVVSKDMDYKKDYNEVIDSNIGKFYYKGY 80 (128)
T ss_dssp -CEEEECHHHHHHHHHHHTCTTEEEEEEEC-SSCSGGGGSSCCCCSCCEEEEEEETTSSCTTTSCEEEEETTSCEEECGG
T ss_pred ccEEEECHHHHHHHHHHHhcCCceEEEEEe-CCCCccccCCCCCCCCEEEEEEeccCCCCCCCCCEEEEeCCEEEEECcc
Confidence 467999999999999999863 368988 666 7999 6999999988777 89999999999999 59
Q ss_pred ccccCCC-CCCCCcccc
Q psy7477 89 PYSTSSP-SEKPVSAST 104 (237)
Q Consensus 89 s~~~l~g-~~IDy~~~~ 104 (237)
+++||+| ++|||.++.
T Consensus 81 s~~~ldgg~~iDy~~~~ 97 (128)
T 2p2e_A 81 SKMYMDDNMKISLNTNN 97 (128)
T ss_dssp GGGGSCSEEEEEECSSS
T ss_pred hHHhhCCCeEEEEeCCC
Confidence 9999996 999999873
No 17
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=21.42 E-value=1.2e+02 Score=21.24 Aligned_cols=31 Identities=26% Similarity=0.385 Sum_probs=21.8
Q ss_pred ceeeCHHHHHHHHHHhhC-CCcEEEEEecCCC
Q psy7477 27 DLVIHDSCIKKLKEISTD-GSFLRIIVEGGGC 57 (237)
Q Consensus 27 ~itlT~~A~~~i~~l~~~-~~~lRi~v~~gGC 57 (237)
.+.+|+....+..+.+.+ +.-.|+...+.||
T Consensus 25 ~l~VS~~TIRrDL~~Le~~G~l~R~~~~~~~C 56 (87)
T 2k02_A 25 RLQTPQPLIDAMLERMEAMGKVVRISETSEGC 56 (87)
T ss_dssp HTTCCHHHHHHHHHHHHTTCCSEEEEEECCSS
T ss_pred HHCcCHHHHHHHHHHHHHCCCEEEEecCCCCC
Confidence 366788888887777766 5556876556666
Done!