RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7477
         (237 letters)



>d1s98a_ b.124.1.1 (A:) Fe-S scaffold protein IscA (YfhF)
           {Escherichia coli [TaxId: 562]}
          Length = 97

 Score = 74.6 bits (183), Expect = 4e-18
 Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 4/92 (4%)

Query: 110 IHDSCIKKLKEI---STDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVI 166
           + DS   ++         G  LR+ V   GCSG  Y  E   + + ED V+E  G KVV+
Sbjct: 4   LSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVV 63

Query: 167 DQTSLEYVQGSVIEYHQELIRSAFQISNNPQV 198
           D  S++++ G+ +++ +E +   F+   NP V
Sbjct: 64  DGKSMQFLDGTQLDFVKEGLNEGFKF-TNPNV 94



 Score = 45.4 bits (107), Expect = 2e-07
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 30 IHDSCIKKLKEI---STDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKI 84
          + DS   ++         G  LR+ V   GCSG  Y  E   + + ED V+E  G K+
Sbjct: 4  LSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKV 61


>d1nwba_ b.124.1.1 (A:) Hypothetical protein Aq_1857 {Aquifex
           aeolicus [TaxId: 63363]}
          Length = 101

 Score = 71.7 bits (175), Expect = 5e-17
 Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 5/91 (5%)

Query: 110 IHDSCIKKLKEI----STDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVV 165
           + D  ++++K++    + +   LRI V  GGCSGFQY    D  V + D V+E  G KVV
Sbjct: 12  VTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGVKVV 71

Query: 166 IDQTSLEYVQGSVIEYHQELIRSAFQISNNP 196
           ID  S+ YV G+ ++Y  + +   F I  NP
Sbjct: 72  IDPFSMPYVNGAELDYVVDFMGGGFTI-RNP 101



 Score = 37.8 bits (87), Expect = 1e-04
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 4/59 (6%)

Query: 30 IHDSCIKKLKEI----STDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKI 84
          + D  ++++K++    + +   LRI V  GGCSGFQY    D  V + D V+E  G K+
Sbjct: 12 VTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGVKV 70


>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2
           (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 228

 Score = 27.3 bits (60), Expect = 1.4
 Identities = 20/128 (15%), Positives = 42/128 (32%), Gaps = 5/128 (3%)

Query: 96  SEKPVSASTLKDLVIHDSCIKKLKEISTDGSFLRIIVEGGGCS----GFQYKFELDTQVS 151
           SEK    S L+D   +    +K++E+S   + +R       C     G+ Y   L  +  
Sbjct: 4   SEKCDILSILRDHPENRIYRRKIEELSKRFTAIRKTKGDRNCFYRALGYSYLESLLGKSR 63

Query: 152 DEDRVYEKSGCKVVIDQTSLEYVQGSVIEYHQELIRSAFQISNNPQVEQGNLTKGDHFIS 211
           +  +  E+   +   D  +  + +     +          +  +  V        D   S
Sbjct: 64  EIFKFKERV-LQTPNDLLAAGFEEHKFRNFFNAFYSVVELVEKDGSVSSLLKVFNDQSAS 122

Query: 212 PSNITRIR 219
              +  +R
Sbjct: 123 DHIVQFLR 130


>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 224

 Score = 26.1 bits (56), Expect = 3.3
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 24 TLKDLVIHDSCIKKLKEISTDGSFLRIIVEGG-GCSGFQYKFEL 66
           L D+V +   I +L++I+ DG+   +I+ G  G         L
Sbjct: 13 VLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCL 56



 Score = 26.1 bits (56), Expect = 3.3
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 104 TLKDLVIHDSCIKKLKEISTDGSFLRIIVEGG-GCSGFQYKFEL 146
            L D+V +   I +L++I+ DG+   +I+ G  G         L
Sbjct: 13  VLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCL 56


>d1g7sa1 b.43.3.1 (A:228-328) Initiation factor IF2/eIF5b, domains 2
           and 4 {Archaeon Methanobacterium thermoautotrophicum
           [TaxId: 145262]}
          Length = 101

 Score = 24.3 bits (53), Expect = 6.8
 Identities = 7/31 (22%), Positives = 12/31 (38%)

Query: 198 VEQGNLTKGDHFISPSNITRIRPRLSYRISP 228
           +  G L K D     ++   I  R+   + P
Sbjct: 26  IYDGILRKDDTIAMMTSKDVISTRIRSLLKP 56


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.133    0.380 

Gapped
Lambda     K      H
   0.267   0.0564    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 873,392
Number of extensions: 40154
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 10
Length of query: 237
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 154
Effective length of database: 1,268,006
Effective search space: 195272924
Effective search space used: 195272924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.8 bits)