BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7478
(180 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 103 bits (258), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 58/74 (78%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
P + + I++ SGTVCL+VINQ WT LYDL+NIFE+FLPQLL YPNP DPLNGD
Sbjct: 85 PSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGD 144
Query: 167 AAAMYLDKPDKYKE 180
AAAMYL +P++YK+
Sbjct: 145 AAAMYLHRPEEYKQ 158
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 38/57 (66%), Positives = 47/57 (82%)
Query: 124 SGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGDAAAMYLDKPDKYKE 180
SG+VCL+VINQ WTPLY L N+FE FLPQLLTYPNP+DPLN DAA++ + + Y+E
Sbjct: 80 SGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEE 136
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 65/122 (53%), Gaps = 14/122 (11%)
Query: 61 RRTLTFIRIGKPALKPRPTRCVEG--------EGAP----TRTLSVQIPLHRVHEQGVPP 108
RR + ++R+ K P+ V EG P T L VQ+P + P
Sbjct: 16 RREMDYMRLCNSTRKVYPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKS--PS 73
Query: 109 VVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGDAA 168
+ + I + SG+VCL+VINQ WTP+Y L NIF+ FLPQLL YPNP+DPLN AA
Sbjct: 74 IGFCNRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAA 133
Query: 169 AM 170
+
Sbjct: 134 HL 135
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 91 TLSVQIPLHRVHEQGVPPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFL 150
+++ + + V+ P VV I+ H + G VCLN++ ++W+P DL +I T L
Sbjct: 81 SINFNLDFNEVYPIEPPKVVCLKKIF-HPNIDLKGNVCLNILREDWSPALDLQSII-TGL 138
Query: 151 PQLLTYPNPTDPLNGDAAAMYLDKPDKYKE 180
L PNP DPLN DAA + + ++ E
Sbjct: 139 LFLFLEPNPNDPLNKDAAKLLCEGEKEFAE 168
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
PP V S H + G++CL+++ +W+P+YD++ I T + LL PNP P N +
Sbjct: 67 PPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAIL-TSIQSLLCDPNPNSPANSE 125
Query: 167 AAAMYLDKPDKY 178
AA MY + +Y
Sbjct: 126 AARMYSESKREY 137
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 85 EGAPTRTLSVQIPLHRVHEQ-GVPPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLS 143
EG P + ++ + E PP V S H + G++CL+++ W+P YD+S
Sbjct: 44 EGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVS 103
Query: 144 NIFETFLPQLLTYPNPTDPLNGDAAAMYLDKPDKYKE 180
+I T + LL PNP P N AA +Y + +Y++
Sbjct: 104 SIL-TSIQSLLDEPNPNSPANSQAAQLYQENKREYEK 139
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
PP V S H + +G +CL+++ WTP YD+++I T + L PNP P N +
Sbjct: 67 PPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASIL-TSIQSLFNDPNPASPANVE 125
Query: 167 AAAMYLDKPDKY 178
AA ++ D +Y
Sbjct: 126 AATLFKDHKSQY 137
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
PP V S H + G++CL+++ W+P YD++ I T + LL PNP P N
Sbjct: 70 PPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAIL-TSIQSLLDEPNPNSPANSL 128
Query: 167 AAAMYLDKPDKYKE 180
AA +Y + +Y++
Sbjct: 129 AAQLYQENRREYEK 142
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
PP V S H + G++CL+++ W+P YD++ I T + LL PNP P N
Sbjct: 67 PPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAIL-TSIQSLLDEPNPNSPANSL 125
Query: 167 AAAMYLDKPDKYKE 180
AA +Y + +Y++
Sbjct: 126 AAQLYQENRREYEK 139
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
PPVV + H + SG +CL+++ + WT YD+ I + L LL PN PLN
Sbjct: 72 PPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLS-LQSLLGEPNNASPLNAQ 130
Query: 167 AAAMY 171
AA M+
Sbjct: 131 AADMW 135
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
P V + IY H + +G++CL+++ +W+P +S + + LL PNP DPL D
Sbjct: 70 PKVAFTTKIY-HPNINSNGSICLDILRSQWSPALTVSKVLLSIC-SLLCDPNPDDPLVPD 127
Query: 167 AAAMYLDKPDKY 178
A +Y +KY
Sbjct: 128 IAHIYKSDKEKY 139
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
P + + IY H + +G++CL+++ +W+P +S + + LL PNP DPL D
Sbjct: 83 PKIAFTTKIY-HPNINSNGSICLDILRSQWSPALTVSKVLLSIC-SLLCDPNPDDPLVPD 140
Query: 167 AAAMYLDKPDKY 178
A +Y +KY
Sbjct: 141 IAQIYKSDKEKY 152
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
P + + IY H + +G++CL+++ +W+P +S + + LL PNP DPL D
Sbjct: 67 PKIAFTTKIY-HPNINSNGSICLDILRSQWSPALTVSKVLLSIC-SLLCDPNPDDPLVPD 124
Query: 167 AAAMYLDKPDKY 178
A +Y +KY
Sbjct: 125 IAQIYKSDKEKY 136
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
P + + IY H + +G++CL+++ +W+P +S + + LL PNP DPL D
Sbjct: 71 PKIAFTTKIY-HPNINSNGSICLDILRSQWSPALTVSKVLLSIC-SLLCDPNPDDPLVPD 128
Query: 167 AAAMYLDKPDKY 178
A +Y +KY
Sbjct: 129 IAQIYKSDKEKY 140
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
PP V + H + G VCLN++ ++W P+ +++I L L PNP DPLN +
Sbjct: 67 PPKVKCETXVYHPNIDLEGNVCLNILREDWKPVLTINSIIYG-LQYLFLEPNPEDPLNKE 125
Query: 167 AAAM 170
AA +
Sbjct: 126 AAEV 129
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
P V + IY H + +G++CL+++ +W+P +S + + LL PNP DPL +
Sbjct: 75 PKVAFTTRIY-HPNINSNGSICLDILRSQWSPALTISKVLLSIC-SLLCDPNPDDPLVPE 132
Query: 167 AAAMYLDKPDKY 178
A +Y DKY
Sbjct: 133 IARIYKTDRDKY 144
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
P V + IY H + +G++CL+++ +W+P +S + + LL PNP DPL +
Sbjct: 67 PKVAFTTRIY-HPNINSNGSICLDILRSQWSPALTISKVLLSIC-SLLCDPNPDDPLVPE 124
Query: 167 AAAMYLDKPDKY 178
A +Y DKY
Sbjct: 125 IARIYKTDRDKY 136
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
P V + IY H + +G++CL+++ +W+P +S + + LL PNP DPL +
Sbjct: 64 PKVAFTTRIY-HPNINSNGSICLDILRSQWSPALTISKVLLSIC-SLLCDPNPDDPLVPE 121
Query: 167 AAAMYLDKPDKY 178
A +Y DKY
Sbjct: 122 IARIYKTDRDKY 133
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
P V + IY H + +G++CL+++ +W+P +S + + LL PNP DPL +
Sbjct: 73 PKVAFTTRIY-HPNINSNGSICLDILRSQWSPALTISKVLLSIC-SLLCDPNPDDPLVPE 130
Query: 167 AAAMYLDKPDKY 178
A +Y DKY
Sbjct: 131 IARIYKTDRDKY 142
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
P V + IY H + G +CL+++ W+P +S + + LLT NP DPL G
Sbjct: 112 PKVTFRTRIY-HCNINSQGVICLDILKDNWSPALTISKVLLSIC-SLLTDCNPADPLVGS 169
Query: 167 AAAMYL 172
A Y+
Sbjct: 170 IATQYM 175
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 106 VPPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNG 165
P V + +Y H + +G +CL+++ +W+P LS + + + LLT PNP+DPL+
Sbjct: 67 APRVTFMTKVY-HPNINKNGVICLDILKDQWSPALTLSRVLLS-ISSLLTDPNPSDPLDP 124
Query: 166 DAA 168
+ A
Sbjct: 125 EVA 127
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
P V + IY H + +G++CL+++ +W+P +S + + LL PNP DPL +
Sbjct: 83 PKVAFTTRIY-HPNINSNGSICLDILRSQWSPALTISKVLLSIC-SLLCDPNPDDPLVPE 140
Query: 167 AAAMYLDKPDKY 178
A +Y +KY
Sbjct: 141 IARIYKTDREKY 152
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
PP V ++ H + G V LN++ ++W P+ +++I L L PNP DPLN +
Sbjct: 87 PPKVKCETMVYHPNIDLEGNVALNILREDWKPVLTINSIIYG-LQYLFLEPNPEDPLNKE 145
Query: 167 AAAM 170
AA +
Sbjct: 146 AAEV 149
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
P V + IY H + +G++CL+++ +W+P +S + + LL PNP DPL +
Sbjct: 67 PKVAFTTRIY-HPNINSNGSICLDILRSQWSPALTISKVLLSIC-SLLCDPNPDDPLVPE 124
Query: 167 AAAMYLDKPDKY 178
A +Y +KY
Sbjct: 125 IARIYKTDREKY 136
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
P V + IY H + +G++CL+++ +W+P +S + + LL PNP DPL +
Sbjct: 67 PKVAFTTRIY-HPNINSNGSICLDILRSQWSPALTISKVLLSIC-SLLCDPNPDDPLVPE 124
Query: 167 AAAMYLDKPDKY 178
A +Y +KY
Sbjct: 125 IARIYKTDREKY 136
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
P V + IY H + +G++CL+++ +W+P +S + + LL PNP DPL +
Sbjct: 67 PKVAFTTRIY-HPNINSNGSICLDILRSQWSPALTISKVLLSIC-SLLCDPNPDDPLVPE 124
Query: 167 AAAMYLDKPDKY 178
A +Y +KY
Sbjct: 125 IARIYKTDREKY 136
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
P V + IY H + +G++CL+++ +W+P +S + + LL PNP DPL +
Sbjct: 70 PKVAFTTRIY-HPNINSNGSICLDILRSQWSPALTISKVLLSIC-SLLCDPNPDDPLVPE 127
Query: 167 AAAMYLDKPDKY 178
A +Y +KY
Sbjct: 128 IARIYKTDREKY 139
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
P V + IY H + +G++CL+++ +W+P +S + + LL PNP DPL +
Sbjct: 75 PKVAFTTRIY-HPNINSNGSICLDILRSQWSPALTISKVLLSIC-SLLCDPNPDDPLVPE 132
Query: 167 AAAMYLDKPDKY 178
A +Y +KY
Sbjct: 133 IARIYQTDREKY 144
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 91 TLSVQIPLHRVHEQGVPPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFL 150
T +++ L + P V + IY H + G +CL+++ +W+P + + + +
Sbjct: 49 TFKLELFLPEEYPMAAPKVRFMTKIY-HPNVDKLGRICLDILKDKWSPALQIRTVLLS-I 106
Query: 151 PQLLTYPNPTDPLNGDAAAMY 171
LL+ PNP DPL D A +
Sbjct: 107 QALLSAPNPDDPLANDVAEQW 127
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
P V + IY H + +G++CL+++ +W+P +S + + LL PNP DPL +
Sbjct: 65 PKVAFTTRIY-HPNINSNGSICLDILRSQWSPALTISKVLLSIC-SLLCDPNPDDPLVPE 122
Query: 167 AAAMYLDKPDKY 178
A +Y +KY
Sbjct: 123 IARIYKTDREKY 134
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 91 TLSVQIPLHRVHEQGVPPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFL 150
T +++ L + P V + IY H + G +CL+++ +W+P + + + +
Sbjct: 51 TFKLELFLPEEYPMAAPKVRFMTKIY-HPNVDKLGRICLDILKDKWSPALQIRTVLLS-I 108
Query: 151 PQLLTYPNPTDPLNGDAAAMY 171
LL+ PNP DPL D A +
Sbjct: 109 QALLSAPNPDDPLANDVAEQW 129
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 91 TLSVQIPLHRVHEQGVPPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFL 150
T +++ L + P V + IY H + G +CL+++ +W+P + + + +
Sbjct: 53 TFKLELFLPEEYPMAAPKVRFMTKIY-HPNVDKLGRICLDILKDKWSPALQIRTVLLS-I 110
Query: 151 PQLLTYPNPTDPLNGDAAAMY 171
LL+ PNP DPL D A +
Sbjct: 111 QALLSAPNPDDPLANDVAEQW 131
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
P V + IY H + +G++CL+++ +W+P +S + + LL PNP DPL +
Sbjct: 68 PKVAFTTRIY-HPNINSNGSICLDILRSQWSPALTISKVLLSIC-SLLCDPNPDDPLVPE 125
Query: 167 AAAMYLDKPDKYKE 180
A +Y ++Y +
Sbjct: 126 IARIYKTDRERYNQ 139
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 91 TLSVQIPLHRVHEQGVPPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFL 150
T +++ L + P V + IY H + G +CL+++ +W+P + + + +
Sbjct: 56 TFKLELFLPEEYPMAAPKVRFMTKIY-HPNVDKLGRICLDILKDKWSPALQIRTVLLS-I 113
Query: 151 PQLLTYPNPTDPLNGDAAAMY 171
LL+ PNP DPL D A +
Sbjct: 114 QALLSAPNPDDPLANDVAEQW 134
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 91 TLSVQIPLHRVHEQGVPPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFL 150
T +++ L + P V + IY H + G +CL+++ +W+P + + + +
Sbjct: 54 TFKLELFLPEEYPMAAPKVRFMTKIY-HPNVDKLGRICLDILKDKWSPALQIRTVLLS-I 111
Query: 151 PQLLTYPNPTDPLNGDAAAMY 171
LL+ PNP DPL D A +
Sbjct: 112 QALLSAPNPDDPLANDVAEQW 132
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
P V + IY H + G +CL+++ W+P +S + + LLT NP DPL G
Sbjct: 67 PKVTFRTRIY-HCNINSQGVICLDILKDNWSPALTISKVLLSIC-SLLTDCNPADPLVGS 124
Query: 167 AAAMYL 172
A Y+
Sbjct: 125 IATQYM 130
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
P V + IY H + +G++CL+++ +W+P +S + + + LLT PNP DPL +
Sbjct: 65 PKVNFTTRIY-HPNINSNGSICLDILRDQWSPALTISKVLLS-ISSLLTDPNPDDPLVPE 122
Query: 167 AAAMYLDKPDKYK 179
A +Y +Y+
Sbjct: 123 IAHVYKTDRSRYE 135
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
P V + IY H + +G++CL+++ +W P +S + + LL PNP DPL +
Sbjct: 67 PKVAFTTRIY-HPNINSNGSICLDILRSQWGPALTISKVLLSIC-SLLCDPNPDDPLVPE 124
Query: 167 AAAMYLDKPDKY 178
A +Y +KY
Sbjct: 125 IARIYKTDREKY 136
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
P V + IY H + +G++CL+ + +W+P +S + + LL PNP DPL +
Sbjct: 67 PKVAFTTRIY-HPNINSNGSICLDALRSQWSPALTISKVLLSIC-SLLCDPNPDDPLVPE 124
Query: 167 AAAMYLDKPDKY 178
A +Y +KY
Sbjct: 125 IARIYKTDREKY 136
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
P V + IY H + G +CL+++ +W+P +S + + + LLT PNP DPL +
Sbjct: 85 PKVNFTTKIY-HPNINSQGAICLDILKDQWSPALTISKVLLS-ISSLLTDPNPDDPLVPE 142
Query: 167 AAAMY 171
A +Y
Sbjct: 143 IAHLY 147
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
PP Y + H + +G +C+NV+ ++WT + ++ T + LL +PNP LN +
Sbjct: 76 PPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLT-IKCLLIHPNPESALNEE 134
Query: 167 AAAMYLDKPDKY 178
A + L+ ++Y
Sbjct: 135 AGRLLLENYEEY 146
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
P + + IY H + +G++ L+++ +W+P +S + + LL PNP DPL D
Sbjct: 71 PKIAFTTKIY-HPNINSNGSIKLDILRSQWSPALTVSKVLLSIC-SLLCDPNPDDPLVPD 128
Query: 167 AAAMYLDKPDKY 178
A +Y +KY
Sbjct: 129 IAQIYKSDKEKY 140
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
P + + +Y+ + +G +CL+++ W+P+ L + + L LL P P DP + +
Sbjct: 67 PKMQFDTKVYHPNISSVTGAICLDILRNAWSPVITLKSALIS-LQALLQSPEPNDPQDAE 125
Query: 167 AAAMYL 172
A YL
Sbjct: 126 VAQHYL 131
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 39.7 bits (91), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
P + + I++ + +G +CL+V+ EW+P + + + LL+ P P DP + +
Sbjct: 87 PKIKFVTKIWHPNISSQTGAICLDVLKNEWSPALTIRTALLS-IQALLSDPQPDDPQDAE 145
Query: 167 AAAMY 171
A MY
Sbjct: 146 VAKMY 150
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
P V + IY H + +G++ L+++ +W+P +S + + LL PNP DPL +
Sbjct: 65 PKVAFTTRIY-HPNINSNGSISLDILRSQWSPALTISKVLLSIC-SLLCDPNPDDPLVPE 122
Query: 167 AAAMYLDKPDKY 178
A +Y DKY
Sbjct: 123 IARIYKTDRDKY 134
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
P + + +Y+ + +G +CL+++ W+P+ L + + L LL P P DP + +
Sbjct: 66 PKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALIS-LQALLQSPEPNDPQDAE 124
Query: 167 AAAMYL 172
A YL
Sbjct: 125 VAQHYL 130
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
P + + IY H + +G +CL+++ +W+P LS + + LLT NP DPL +
Sbjct: 66 PKISFTTKIY-HPNINANGNICLDILKDQWSPALTLSKVLLSIC-SLLTDANPDDPLVPE 123
Query: 167 AAAMYLDKPDKYK 179
A +Y KY+
Sbjct: 124 IAHIYKTDRPKYE 136
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
P V + IY H + +G++ L+++ +W+P +S + + + LL PNP DPL +
Sbjct: 67 PKVAFTTRIY-HPNINSNGSISLDILRSQWSPALTISKVLLS-ICSLLCDPNPDDPLVPE 124
Query: 167 AAAMYLDKPDKY 178
A +Y +KY
Sbjct: 125 IARIYKTDREKY 136
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
P V + IY H + +G++ L+++ +W+P +S + + LL PNP DPL +
Sbjct: 65 PKVAFTTRIY-HPAINSNGSISLDILRSQWSPALTISKVLLSIC-SLLCDPNPDDPLVPE 122
Query: 167 AAAMYLDKPDKY 178
A +Y +KY
Sbjct: 123 IARIYKTDREKY 134
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 106 VPPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNG 165
P V + IY H + G +CL+V+ W+P + + + + LL PNP DPL
Sbjct: 68 APKVRFLTKIY-HPNIDRLGRICLDVLKTNWSPALQIRTVLLS-IQALLASPNPNDPLAN 125
Query: 166 DAAAMYL 172
D A ++
Sbjct: 126 DVAEDWI 132
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
P V + IY H + +G++ L+++ +W+P +S + + LL PNP DPL +
Sbjct: 64 PKVAFTTRIY-HPNINSNGSISLDILRSQWSPALKISKVLLSIC-SLLCDPNPDDPLVPE 121
Query: 167 AAAMYLDKPDKY 178
A +Y +KY
Sbjct: 122 IARIYKTDREKY 133
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 106 VPPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNG 165
P V + IY H + G +CL+V+ W+P + + + + LL PNP DPL
Sbjct: 66 APKVRFLTKIY-HPNIDRLGRICLDVLKTNWSPALQIRTVLLS-IQALLASPNPNDPLAN 123
Query: 166 DAAAMYL 172
D A ++
Sbjct: 124 DVAEDWI 130
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
P V + IY H + +G++ L+++ +W+P +S + + LL PNP DPL +
Sbjct: 68 PKVAFTTRIY-HPNINSNGSISLDILRSQWSPALTISKVLLSIC-SLLCDPNPDDPLVPE 125
Query: 167 AAAMYLDKPDKY 178
A +Y +KY
Sbjct: 126 IARIYKTDREKY 137
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
P V + IY H + +G++ L+++ +W+P +S + + LL PNP DPL +
Sbjct: 83 PKVAFTTRIY-HPNINSNGSIXLDILRSQWSPALTISKVLLSIC-SLLCDPNPDDPLVPE 140
Query: 167 AAAMYLDKPDKY 178
A +Y +KY
Sbjct: 141 IARIYKTDREKY 152
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
P + + I++ + +G +CL+++ EW+P + + + +L P PTDP + +
Sbjct: 109 PKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLS-IQAMLADPVPTDPQDAE 167
Query: 167 AAAMYLD 173
A M ++
Sbjct: 168 VAKMMIE 174
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVIN--QEWTPLYDLSNIFETFLPQLLTYPNPTDP 162
PP V P+ + H + SGT+CL+++N Q+W P L I + LL PNP P
Sbjct: 74 PPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIV-LGVQDLLDSPNPNSP 130
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVIN--QEWTPLYDLSNIFETFLPQLLTYPNPTDP 162
PP V P+ + H + SGT+CL+++N Q+W P L I + LL PNP P
Sbjct: 72 PPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIV-LGVQDLLDSPNPNSP 128
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 125 GTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGDAAAMY 171
G + L+++ ++W+ LYD+ I + + LL PN PLN AA ++
Sbjct: 111 GNISLDILKEKWSALYDVRTILLS-IQSLLGEPNIDSPLNTHAAELW 156
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 106 VPPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNG 165
P V + IY H + G + L+V+ W+P + + + + LL PNP DPL
Sbjct: 66 APKVRFLTKIY-HPAIDRLGRISLDVLKTNWSPALQIRTVLLS-IQALLASPNPNDPLAN 123
Query: 166 DAAAMYL 172
D A ++
Sbjct: 124 DVAEDWI 130
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 34.7 bits (78), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVI--NQEWTPLYDLSNIFETFLPQLLTYPNPTDPLN 164
P + P ++ H + SGTVCL+++ +++W P + I + +LL PN DP
Sbjct: 76 PKCKFEPPLF-HPNVAPSGTVCLSILEEDKDWRPAITIKQIL-LGIQELLNEPNIQDPAQ 133
Query: 165 GDAAAMYLDKPDKYKE 180
+A +Y +Y++
Sbjct: 134 AEAYTIYCQNRVEYEK 149
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 34.7 bits (78), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 106 VPPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNG 165
P V + IY H + G + L+V+ W+P + + + + LL PNP DPL
Sbjct: 66 APKVRFLTKIY-HPNIDRLGRISLDVLKTNWSPALQIRTVLLS-IQALLASPNPNDPLAN 123
Query: 166 DAAAMYL 172
D A ++
Sbjct: 124 DVAEDWI 130
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 34.3 bits (77), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
P V + IY H + G +CL+++ +W+P + + + + LL+ P P DPL+
Sbjct: 65 PKVRFLTKIY-HPNIDKLGRICLDILKDKWSPALQIRTVLLS-IQALLSSPEPDDPLDSK 122
Query: 167 AAAMY 171
A +
Sbjct: 123 VAEHF 127
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 34.3 bits (77), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVI--NQEWTPLYDLSNIFETFLPQLLTYPNPTDPLN 164
P + P ++ H + SGTVCL+++ +++W P + I + +LL PN DP
Sbjct: 76 PKCKFEPPLF-HPNVYPSGTVCLSILEEDKDWRPAITIKQIL-LGIQELLNEPNIQDPAQ 133
Query: 165 GDAAAMYLDKPDKYKE 180
+A +Y +Y++
Sbjct: 134 AEAYTIYCQNRVEYEK 149
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 34.3 bits (77), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
P V + IY H + G +CL+++ +W+P + + + + LL+ P P DPL+
Sbjct: 65 PKVRFLTKIY-HPNIDKLGRICLDILKDKWSPALQIRTVLLS-IQALLSSPEPDDPLDSK 122
Query: 167 AAAMY 171
A +
Sbjct: 123 VAEHF 127
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 34.3 bits (77), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVI--NQEWTPLYDLSNIFETFLPQLLTYPNPTDPLN 164
P + P ++ H + SGTVCL+++ +++W P + I + +LL PN DP
Sbjct: 75 PKCKFEPPLF-HPNVYPSGTVCLSILEEDKDWRPAITIKQIL-LGIQELLNEPNIQDPAQ 132
Query: 165 GDAAAMYLDKPDKYKE 180
+A +Y +Y++
Sbjct: 133 AEAYTIYCQNRVEYEK 148
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 34.3 bits (77), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVI--NQEWTPLYDLSNIFETFLPQLLTYPNPTDPLN 164
P + P ++ H + SGTVCL+++ +++W P + I + +LL PN DP
Sbjct: 74 PKCKFEPPLF-HPNVYPSGTVCLSILEEDKDWRPAITIKQIL-LGIQELLNEPNIQDPAQ 131
Query: 165 GDAAAMYLDKPDKYKE 180
+A +Y +Y++
Sbjct: 132 AEAYTIYCQNRVEYEK 147
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 34.3 bits (77), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVI--NQEWTPLYDLSNIFETFLPQLLTYPNPTDPLN 164
P + P ++ H + SGTVCL+++ +++W P + I + +LL PN DP
Sbjct: 73 PKCKFEPPLF-HPNVYPSGTVCLSILEEDKDWRPAITIKQIL-LGIQELLNEPNIQDPAQ 130
Query: 165 GDAAAMYLDKPDKYKE 180
+A +Y +Y++
Sbjct: 131 AEAYTIYCQNRVEYEK 146
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 34.3 bits (77), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVI--NQEWTPLYDLSNIFETFLPQLLTYPNPTDPLN 164
P + P ++ H + SGTVCL+++ +++W P + I + +LL PN DP
Sbjct: 75 PKCKFEPPLF-HPNVYPSGTVCLSILEEDKDWRPAITIKQIL-LGIQELLNEPNIQDPAQ 132
Query: 165 GDAAAMYLDKPDKYKE 180
+A +Y +Y++
Sbjct: 133 AEAYTIYCQNRVEYEK 148
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 34.3 bits (77), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVI--NQEWTPLYDLSNIFETFLPQLLTYPNPTDPLN 164
P + P ++ H + SGTVCL+++ +++W P + I + +LL PN DP
Sbjct: 78 PKCKFEPPLF-HPNVYPSGTVCLSILEEDKDWRPAITIKQIL-LGIQELLNEPNIQDPAQ 135
Query: 165 GDAAAMYLDKPDKYKE 180
+A +Y +Y++
Sbjct: 136 AEAYTIYCQNRVEYEK 151
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 34.3 bits (77), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVI--NQEWTPLYDLSNIFETFLPQLLTYPNPTDPLN 164
P + P ++ H SGTVCL+++ +++W P + I + +LL PN DP
Sbjct: 76 PKCKFEPPLF-HPQVYPSGTVCLSILEEDKDWRPAITIKQIL-LGIQELLNEPNIQDPAQ 133
Query: 165 GDAAAMYLDKPDKYKE 180
+A +Y +Y++
Sbjct: 134 AEAYTIYCQNRVEYEK 149
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 33.9 bits (76), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 124 SGTVCLNVIN-QEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGDAAAM 170
+G +CLN++ +EWTP++DL + +LL P PL+ D A+
Sbjct: 100 TGEICLNILKPEEWTPVWDLLHCVHAVW-RLLREPVCDSPLDVDIGAI 146
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 33.5 bits (75), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQE--WTPLYDLSNIFETFLPQLLTYPNPTDPLN 164
P + P ++ H + SGTVCL+++N+E W P + I + LL PN P
Sbjct: 79 PKCRFTPPLF-HPNVYPSGTVCLSILNEEEGWKPAITIKQIL-LGIQDLLDDPNIASPAQ 136
Query: 165 GDAAAMYLDKPDK 177
+A M+ K DK
Sbjct: 137 TEAYTMF--KKDK 147
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 118 HQSTLYSGTVCLNVIN----QEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGDAAAMY 171
H + +G +CL+V+ W P +++ + T + L++ PNP DPL D ++ +
Sbjct: 78 HPNIDSAGRICLDVLKLPPKGAWRPSLNIATVL-TSIQLLMSEPNPDDPLMADISSEF 134
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 124 SGTVCLNVIN-QEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
+G +CLN++ +EWTP++DL + +LL P PL+ D
Sbjct: 100 TGEICLNILKPEEWTPVWDLLHCVHAVW-RLLREPVSDSPLDVD 142
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVI--NQEWTPLYDLSNIFETFLPQLLTYPNPTDPLN 164
P + P ++ H + SGTVCL+++ +++W P + I + +LL PN P
Sbjct: 76 PKCKFEPPLF-HPNVYPSGTVCLSILEEDKDWRPAITIKQIL-LGIQELLNEPNIQSPAQ 133
Query: 165 GDAAAMYLDKPDKYKE 180
+A +Y +Y++
Sbjct: 134 AEAYTIYCQNRVEYEK 149
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 124 SGTVCLNVIN-QEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
+G +CLN++ +EWTP++DL + +LL P PL+ D
Sbjct: 100 TGEICLNILKPEEWTPVWDLLHCVHAVW-RLLREPVCDSPLDVD 142
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVI--NQEWTPLYDLSNIFETFLPQLLTYPNPTDPLN 164
P + P ++ H + SGTVCL+++ +++W P + I + +LL PN P
Sbjct: 76 PKCKFEPPLF-HPNVYPSGTVCLSILEEDKDWRPAITIKQIL-LGIQELLNEPNIQAPAQ 133
Query: 165 GDAAAMYLDKPDKYKE 180
+A +Y +Y++
Sbjct: 134 AEAYTIYCQNRVEYEK 149
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQE-WTPLYDLSNIFETFLPQLLTYPNPTDPLNG 165
PP++ + H + +G +CL +I+ E W P + E L L+ PN +PL
Sbjct: 67 PPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEA-LNVLVNRPNIREPLRM 125
Query: 166 DAAAMYLDKPDKYKE 180
D A + P+ +++
Sbjct: 126 DLADLLTQNPELFRK 140
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQE-WTPLYDLSNIFETFLPQLLTYPNPTDPLNG 165
PP++ + H + +G +CL +I+ E W P + E L L+ PN +PL
Sbjct: 64 PPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEA-LNVLVNRPNIREPLRM 122
Query: 166 DAAAMYLDKPDKYKE 180
D A + P+ +++
Sbjct: 123 DLADLLTQNPELFRK 137
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 30.0 bits (66), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVI--NQEWTPLYDLSNIFETFLPQLLTYPNPTDPLN 164
P + P ++ H + SGTV L+++ +++W P + I + +LL PN DP
Sbjct: 73 PKCKFEPPLF-HPNVYPSGTVSLSILEEDKDWRPAITIKQIL-LGIQELLNEPNIQDPAQ 130
Query: 165 GDAAAMYLDKPDKYKE 180
+A +Y +Y++
Sbjct: 131 AEAYTIYCQNRVEYEK 146
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 29.6 bits (65), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
P V + I++ + +G +CL+++ +W L + L LL P DP +
Sbjct: 88 PKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTV-LLSLQALLAAAEPDDPQDAV 146
Query: 167 AAAMYLDKPDKYKE 180
A Y P+ +K+
Sbjct: 147 VANQYKQNPEMFKQ 160
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVI--NQEWTPLYDLSNIFETFLPQLLTYPNPTDPLN 164
P + P ++ H + SGTV L+++ +++W P + I + +LL PN DP
Sbjct: 73 PKCKFEPPLF-HPNVYPSGTVXLSILEEDKDWRPAITIKQIL-LGIQELLNEPNIQDPAQ 130
Query: 165 GDAAAMY 171
+A +Y
Sbjct: 131 AEAYTIY 137
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
P V + I++ + +G +CL+++ +W L + L LL P DP +
Sbjct: 75 PKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTV-LLSLQALLAAAEPDDPQDAV 133
Query: 167 AAAMYLDKPDKYKE 180
A Y P+ +K+
Sbjct: 134 VANQYKQNPEMFKQ 147
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
P V + I++ + +G +CL+++ +W L + L LL P DP +
Sbjct: 73 PKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTV-LLSLQALLAAAEPDDPQDAV 131
Query: 167 AAAMYLDKPDKYKE 180
A Y P+ +K+
Sbjct: 132 VANQYKQNPEMFKQ 145
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
P V + I++ + +G +CL+++ +W L + L LL P DP +
Sbjct: 72 PKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTV-LLSLQALLAAAEPDDPQDAV 130
Query: 167 AAAMYLDKPDKYKE 180
A Y P+ +K+
Sbjct: 131 VANQYKQNPEMFKQ 144
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
P V + I++ + +G +CL+++ +W L + L LL P DP +
Sbjct: 124 PKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTV-LLSLQALLAAAEPDDPQDAV 182
Query: 167 AAAMYLDKPDKYKE 180
A Y P+ +K+
Sbjct: 183 VANQYKQNPEMFKQ 196
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 18/76 (23%)
Query: 118 HQSTLYSGTVCLNVIN-------------QEWTPLYDLSNIFETFLPQLLTYPNPTDPLN 164
H + +G VC+++++ + W P ++ I + + LL PN P N
Sbjct: 82 HPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVI-SLLNEPNTFSPAN 140
Query: 165 GDAAAMYLDKPDKYKE 180
DA+ MY K+KE
Sbjct: 141 VDASVMY----RKWKE 152
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 14/67 (20%)
Query: 118 HQSTLYSGTVCLNVIN-------------QEWTPLYDLSNIFETFLPQLLTYPNPTDPLN 164
H + +G VC+++++ + W P ++ I + + LL PN P N
Sbjct: 79 HPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVI-SLLNEPNTFSPAN 137
Query: 165 GDAAAMY 171
DA+ MY
Sbjct: 138 VDASVMY 144
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 15/84 (17%)
Query: 100 RVHEQGVPPVVYPPSIYNHQSTLYSGTVCLNVIN-------------QEWTPLYDLSNIF 146
R + Q P + + I+ H + G VC+++++ + W P++ + I
Sbjct: 61 RDYPQKPPKMKFISEIW-HPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETIL 119
Query: 147 ETFLPQLLTYPNPTDPLNGDAAAM 170
+ + +LT PN P N DAA M
Sbjct: 120 LSVI-SMLTDPNFESPANVDAAKM 142
>pdb|4F4H|A Chain A, Crystal Structure Of A Glutamine Dependent Nad+ Synthetase
From Burkholderia Thailandensis
pdb|4F4H|B Chain B, Crystal Structure Of A Glutamine Dependent Nad+ Synthetase
From Burkholderia Thailandensis
Length = 565
Score = 26.6 bits (57), Expect = 7.1, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Query: 86 GAPTRTLSVQIPLHRVHEQGVPPVVYPPSIYNHQSTLYSGTVCLNVINQEW--TPLYDLS 143
G P R S +R E+GVPPV YN S + G V Q+ T ++D
Sbjct: 90 GHPLRAPSADGNANRAIERGVPPV----DTYNAASLIVGGEVAGTYRKQDLPNTEVFDEK 145
Query: 144 NIFET 148
F T
Sbjct: 146 RYFAT 150
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,410,934
Number of Sequences: 62578
Number of extensions: 166356
Number of successful extensions: 431
Number of sequences better than 100.0: 91
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 325
Number of HSP's gapped (non-prelim): 100
length of query: 180
length of database: 14,973,337
effective HSP length: 93
effective length of query: 87
effective length of database: 9,153,583
effective search space: 796361721
effective search space used: 796361721
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)