Query psy7478
Match_columns 180
No_of_seqs 149 out of 1334
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 19:20:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7478.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7478hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5078 Ubiquitin-protein liga 100.0 1.3E-38 2.8E-43 252.0 11.1 108 60-180 34-141 (153)
2 KOG0417|consensus 100.0 1.4E-38 3E-43 248.5 10.1 112 56-180 25-136 (148)
3 KOG0419|consensus 100.0 6.2E-36 1.3E-40 229.3 10.0 113 55-180 27-139 (152)
4 PTZ00390 ubiquitin-conjugating 100.0 3.8E-35 8.3E-40 232.1 11.9 111 57-180 27-137 (152)
5 PLN00172 ubiquitin conjugating 100.0 5.8E-35 1.2E-39 229.8 11.8 111 57-180 26-136 (147)
6 KOG0425|consensus 100.0 9.4E-35 2E-39 228.3 11.0 114 54-180 28-154 (171)
7 KOG0421|consensus 100.0 5.3E-33 1.2E-37 216.1 7.5 111 56-180 53-163 (175)
8 PF00179 UQ_con: Ubiquitin-con 100.0 3.1E-32 6.8E-37 210.8 10.3 109 59-180 25-134 (140)
9 KOG0418|consensus 100.0 2.7E-32 5.9E-37 219.8 8.9 110 58-179 32-141 (200)
10 KOG0424|consensus 100.0 6E-32 1.3E-36 209.8 9.8 113 55-180 31-146 (158)
11 cd00195 UBCc Ubiquitin-conjuga 100.0 3.7E-31 7.9E-36 205.2 11.6 111 57-180 24-135 (141)
12 KOG0416|consensus 100.0 6.4E-32 1.4E-36 214.8 7.4 113 57-180 25-137 (189)
13 smart00212 UBCc Ubiquitin-conj 100.0 2.1E-30 4.6E-35 201.8 11.4 109 59-180 26-135 (145)
14 KOG0426|consensus 100.0 1E-29 2.2E-34 195.4 9.3 112 56-180 29-153 (165)
15 KOG0422|consensus 100.0 5.7E-28 1.2E-32 186.8 10.5 115 52-180 23-138 (153)
16 KOG0420|consensus 99.9 3.9E-28 8.5E-33 193.4 8.8 95 79-179 69-163 (184)
17 KOG0423|consensus 99.9 5.9E-24 1.3E-28 170.1 2.9 109 59-180 37-145 (223)
18 KOG0427|consensus 99.8 5E-21 1.1E-25 147.3 8.9 99 56-167 38-138 (161)
19 KOG0429|consensus 99.8 1.7E-20 3.7E-25 155.0 9.2 110 59-179 46-158 (258)
20 KOG0894|consensus 99.7 2.7E-17 6E-22 135.6 9.3 85 57-155 30-117 (244)
21 KOG0428|consensus 99.6 5E-15 1.1E-19 124.5 8.1 87 58-158 36-125 (314)
22 KOG0896|consensus 99.3 6.4E-12 1.4E-16 97.1 5.1 90 61-161 38-129 (138)
23 KOG0895|consensus 99.2 2.3E-11 4.9E-16 118.4 5.8 79 64-155 883-970 (1101)
24 KOG0895|consensus 98.9 3.9E-09 8.4E-14 103.1 8.1 85 60-157 310-405 (1101)
25 KOG0897|consensus 98.3 6.4E-07 1.4E-11 67.8 4.2 75 89-166 12-89 (122)
26 PF14461 Prok-E2_B: Prokaryoti 98.1 9.4E-06 2E-10 62.6 6.9 63 89-155 37-105 (133)
27 PF05743 UEV: UEV domain; Int 97.6 0.00013 2.8E-09 55.7 5.6 80 60-155 31-116 (121)
28 KOG2391|consensus 95.8 0.04 8.7E-07 49.1 7.8 72 80-157 61-138 (365)
29 PF14457 Prok-E2_A: Prokaryoti 93.1 0.4 8.6E-06 38.5 6.8 62 90-155 55-125 (162)
30 PF08694 UFC1: Ubiquitin-fold 92.4 0.092 2E-06 41.6 2.1 55 89-146 76-135 (161)
31 PF14462 Prok-E2_E: Prokaryoti 89.2 2.4 5.2E-05 32.7 7.2 65 77-150 34-116 (122)
32 PF05773 RWD: RWD domain; Int 87.3 0.46 9.9E-06 34.1 2.2 24 89-114 50-73 (113)
33 smart00591 RWD domain in RING 85.9 0.88 1.9E-05 32.4 3.0 24 89-114 42-65 (107)
34 KOG3357|consensus 66.1 8.6 0.00019 30.2 3.6 47 90-139 80-128 (167)
35 KOG1144|consensus 63.8 6.9 0.00015 39.0 3.2 27 36-62 258-284 (1064)
36 PF14460 Prok-E2_D: Prokaryoti 59.9 16 0.00035 29.3 4.3 42 112-157 89-133 (175)
37 KOG0309|consensus 57.6 19 0.00041 35.9 5.0 25 89-114 467-491 (1081)
38 PF14455 Metal_CEHH: Predicted 45.5 1.4E+02 0.003 24.2 7.3 20 92-114 57-76 (177)
39 PF06113 BRE: Brain and reprod 43.3 22 0.00049 31.8 2.8 26 89-117 307-332 (333)
40 PF06375 BLVR: Bovine leukaemi 39.5 9.8 0.00021 30.4 0.0 10 60-69 112-121 (154)
41 KOG0662|consensus 39.0 25 0.00053 29.7 2.3 55 105-160 168-225 (292)
42 cd00421 intradiol_dioxygenase 38.8 36 0.00077 26.4 3.1 23 88-112 66-89 (146)
43 KOG0338|consensus 38.5 10 0.00022 36.3 -0.0 22 41-62 145-166 (691)
44 cd03457 intradiol_dioxygenase_ 37.4 36 0.00078 27.8 3.0 25 87-113 86-110 (188)
45 PF13950 Epimerase_Csub: UDP-g 34.3 44 0.00095 22.3 2.6 24 135-158 37-60 (62)
46 KOG1047|consensus 34.0 30 0.00064 33.3 2.2 26 89-115 254-280 (613)
47 PF00558 Vpu: Vpu protein; In 32.9 23 0.0005 25.4 1.1 21 12-32 43-63 (81)
48 cd03459 3,4-PCD Protocatechuat 31.8 52 0.0011 26.1 3.0 25 87-113 72-101 (158)
49 TIGR03737 PRTRC_B PRTRC system 31.4 87 0.0019 26.6 4.5 20 113-133 131-153 (228)
50 KOG4018|consensus 31.0 45 0.00098 28.1 2.6 19 89-109 50-68 (215)
51 KOG0177|consensus 29.6 1E+02 0.0022 25.7 4.4 26 124-149 135-160 (200)
52 KOG3203|consensus 27.2 38 0.00082 27.3 1.5 15 113-129 49-63 (165)
53 KOG2270|consensus 25.7 35 0.00076 31.9 1.2 9 46-54 487-495 (520)
54 PF09765 WD-3: WD-repeat regio 22.7 37 0.00081 29.7 0.7 45 89-150 138-183 (291)
55 KOG2775|consensus 22.6 37 0.00081 30.5 0.7 13 137-149 107-119 (397)
56 KOG2422|consensus 22.3 43 0.00093 32.4 1.1 34 25-58 51-103 (665)
57 PF14812 PBP1_TM: Transmembran 21.2 32 0.00069 24.7 0.0 6 63-68 66-71 (81)
58 PF02115 Rho_GDI: RHO protein 20.8 16 0.00035 30.3 -1.8 46 49-98 36-81 (200)
No 1
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-38 Score=251.97 Aligned_cols=108 Identities=29% Similarity=0.575 Sum_probs=105.6
Q ss_pred CccceEEEEecCCCCCCCCCCCCCCCCCCeeEEEEEecCCCCCCCCCCcEeeCCCcccCCCCCCCCeEEeccCCCCCCCC
Q psy7478 60 KRRTLTFIRIGKPALKPRPTRCVEGEGAPTRTLSVQIPLHRVHEQGVPPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPL 139 (180)
Q Consensus 60 nl~~W~~~I~Gp~~~~~~p~tpy~ggg~~~f~~~I~fp~~YP~~~~pP~V~F~t~IfHPnV~~~~G~vCl~~l~e~WsP~ 139 (180)
|+++|+++|.||+ +|+|+|| +|+++|.||.+||+ +||+|+|.|+||||||+ .+|.|||++|.+.|+|+
T Consensus 34 ~l~~w~~~i~GP~------dtpYegg---~f~~~l~fP~~YP~--~PPkv~F~t~i~HPNV~-~~G~vCLdIL~~~WsP~ 101 (153)
T COG5078 34 NLFHWEATITGPP------DTPYEGG---IFKLTLEFPEDYPF--KPPKVRFTTKIFHPNVD-PSGNVCLDILKDRWSPV 101 (153)
T ss_pred cceeEEEEEECCC------CCCcCCC---EEEEEEECCCCCCC--CCCeeeeccCCcCCCcC-CCCCChhHHHhCCCCcc
Confidence 9999999999999 9999999 99999999999999 99999999999999999 79999999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCCCCccHHHHHHHhhCHHhHhC
Q psy7478 140 YDLSNIFETFLPQLLTYPNPTDPLNGDAAAMYLDKPDKYKE 180 (180)
Q Consensus 140 ~tl~~iL~~Ii~~ll~~P~~~~p~N~eaA~ly~~d~~~F~k 180 (180)
++|.+||++| +.||.+||.++|+|.+||++|++|++.|.+
T Consensus 102 ~~l~sILlsl-~slL~~PN~~~Pln~daa~~~~~d~~~y~~ 141 (153)
T COG5078 102 YTLETILLSL-QSLLLSPNPDSPLNTEAATLYREDKEEYEK 141 (153)
T ss_pred ccHHHHHHHH-HHHHcCCCCCCCCChHHHHHHHhCHHHHHH
Confidence 9999999999 699999999999999999999999999964
No 2
>KOG0417|consensus
Probab=100.00 E-value=1.4e-38 Score=248.49 Aligned_cols=112 Identities=27% Similarity=0.511 Sum_probs=108.4
Q ss_pred hcCCCccceEEEEecCCCCCCCCCCCCCCCCCCeeEEEEEecCCCCCCCCCCcEeeCCCcccCCCCCCCCeEEeccCCCC
Q psy7478 56 KEGEKRRTLTFIRIGKPALKPRPTRCVEGEGAPTRTLSVQIPLHRVHEQGVPPVVYPPSIYNHQSTLYSGTVCLNVINQE 135 (180)
Q Consensus 56 keg~nl~~W~~~I~Gp~~~~~~p~tpy~ggg~~~f~~~I~fp~~YP~~~~pP~V~F~t~IfHPnV~~~~G~vCl~~l~e~ 135 (180)
-.++|+++|+++|.||. +|||+|| +|++.|.||.+||+ .||+|+|.|+||||||+ ..|.||||+|.+.
T Consensus 25 ~~~dnl~~w~a~I~GP~------~SpYEgG---~F~l~I~~p~~YP~--~PPkV~F~TkIyHPNI~-~~G~IclDILk~~ 92 (148)
T KOG0417|consen 25 PVGDNLFHWQATILGPP------GSPYEGG---VFFLEIHFPEDYPF--KPPKVRFLTKIYHPNID-SNGRICLDILKDQ 92 (148)
T ss_pred CCCCceeeEEEEEECCC------CCCcCCC---EEEEEEECCCCCCC--CCCceEeecccccCCcC-ccccchHHhhhcc
Confidence 45889999999999999 9999999 99999999999999 99999999999999999 7999999999999
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCCCCccHHHHHHHhhCHHhHhC
Q psy7478 136 WTPLYDLSNIFETFLPQLLTYPNPTDPLNGDAAAMYLDKPDKYKE 180 (180)
Q Consensus 136 WsP~~tl~~iL~~Ii~~ll~~P~~~~p~N~eaA~ly~~d~~~F~k 180 (180)
|+|+++|..||++| ++||++||+++|++.++|.+|+.|+..|.+
T Consensus 93 WsPAl~i~~VllsI-~sLL~~PnpddPL~~~ia~~~k~d~~~~~~ 136 (148)
T KOG0417|consen 93 WSPALTISKVLLSI-CSLLSDPNPDDPLVPDIAELYKTDRAKYER 136 (148)
T ss_pred CChhhHHHHHHHHH-HHHhcCCCCCccccHHHHHHHHhhHHHHHH
Confidence 99999999999999 699999999999999999999999999963
No 3
>KOG0419|consensus
Probab=100.00 E-value=6.2e-36 Score=229.27 Aligned_cols=113 Identities=22% Similarity=0.499 Sum_probs=108.6
Q ss_pred hhcCCCccceEEEEecCCCCCCCCCCCCCCCCCCeeEEEEEecCCCCCCCCCCcEeeCCCcccCCCCCCCCeEEeccCCC
Q psy7478 55 KKEGEKRRTLTFIRIGKPALKPRPTRCVEGEGAPTRTLSVQIPLHRVHEQGVPPVVYPPSIYNHQSTLYSGTVCLNVINQ 134 (180)
Q Consensus 55 ~keg~nl~~W~~~I~Gp~~~~~~p~tpy~ggg~~~f~~~I~fp~~YP~~~~pP~V~F~t~IfHPnV~~~~G~vCl~~l~e 134 (180)
.-..+|+..|.++|+||. +|||+|| +|+|+|.|+.+||. +||.|+|++.+|||||+ .+|.||||+|..
T Consensus 27 ~P~~~niM~W~a~I~Gp~------~tp~e~g---tFkLtl~FteeYpn--kPP~VrFvs~mFHPNvy-a~G~iClDiLqN 94 (152)
T KOG0419|consen 27 APVENNIMEWNAVIFGPQ------DTPFEGG---TFKLTLEFTEEYPN--KPPTVRFVSKMFHPNVY-ADGSICLDILQN 94 (152)
T ss_pred CCCccceeeeeeeEEcCC------CCCcCCc---eEEEEEEcccccCC--CCCeeEeeeeccCCCcC-CCCcchHHHHhc
Confidence 345689999999999999 9999999 99999999999999 99999999999999999 699999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCCCCCccHHHHHHHhhCHHhHhC
Q psy7478 135 EWTPLYDLSNIFETFLPQLLTYPNPTDPLNGDAAAMYLDKPDKYKE 180 (180)
Q Consensus 135 ~WsP~~tl~~iL~~Ii~~ll~~P~~~~p~N~eaA~ly~~d~~~F~k 180 (180)
.|+|.|++..||.+| |+||.+|++.+|+|.+||+||++|+..|.|
T Consensus 95 rWsp~Ydva~ILtsi-QslL~dPn~~sPaN~eAA~Lf~e~~rey~r 139 (152)
T KOG0419|consen 95 RWSPTYDVASILTSI-QSLLNDPNPNSPANSEAARLFSENKREYER 139 (152)
T ss_pred CCCCchhHHHHHHHH-HHHhcCCCCCCcccHHHHHHHhhChHHHHH
Confidence 999999999999999 899999999999999999999999999874
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=3.8e-35 Score=232.06 Aligned_cols=111 Identities=21% Similarity=0.445 Sum_probs=106.7
Q ss_pred cCCCccceEEEEecCCCCCCCCCCCCCCCCCCeeEEEEEecCCCCCCCCCCcEeeCCCcccCCCCCCCCeEEeccCCCCC
Q psy7478 57 EGEKRRTLTFIRIGKPALKPRPTRCVEGEGAPTRTLSVQIPLHRVHEQGVPPVVYPPSIYNHQSTLYSGTVCLNVINQEW 136 (180)
Q Consensus 57 eg~nl~~W~~~I~Gp~~~~~~p~tpy~ggg~~~f~~~I~fp~~YP~~~~pP~V~F~t~IfHPnV~~~~G~vCl~~l~e~W 136 (180)
..+|+++|+++|.||. +|||+|| +|+|+|.||++||+ .||+|+|.|+||||||+ .+|.||+++|.+.|
T Consensus 27 ~~~d~~~w~~~i~GP~------~tpY~gg---~f~~~i~~p~~YP~--~pP~v~F~t~i~HPNV~-~~G~iCl~iL~~~W 94 (152)
T PTZ00390 27 DPGNYRHFKILMEGPD------GTPYEGG---YYKLELFLPEQYPM--EPPKVRFLTKIYHPNID-KLGRICLDILKDKW 94 (152)
T ss_pred CCCCccEEEEEEEcCC------CCCCcCc---EEEEEEECccccCC--CCCEEEEecCCeeceEC-CCCeEECccCcccC
Confidence 3479999999999999 9999998 99999999999999 99999999999999999 69999999999999
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCCCCccHHHHHHHhhCHHhHhC
Q psy7478 137 TPLYDLSNIFETFLPQLLTYPNPTDPLNGDAAAMYLDKPDKYKE 180 (180)
Q Consensus 137 sP~~tl~~iL~~Ii~~ll~~P~~~~p~N~eaA~ly~~d~~~F~k 180 (180)
+|++||.+||++| ++||.+|++++|+|.+||.+|++|+..|.+
T Consensus 95 ~p~~ti~~iL~~i-~~ll~~P~~~~pln~~aa~~~~~d~~~f~~ 137 (152)
T PTZ00390 95 SPALQIRTVLLSI-QALLSAPEPDDPLDTSVADHFKNNRADAEK 137 (152)
T ss_pred CCCCcHHHHHHHH-HHHHhCCCCCCchHHHHHHHHHHCHHHHHH
Confidence 9999999999999 699999999999999999999999999963
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=5.8e-35 Score=229.76 Aligned_cols=111 Identities=26% Similarity=0.498 Sum_probs=106.7
Q ss_pred cCCCccceEEEEecCCCCCCCCCCCCCCCCCCeeEEEEEecCCCCCCCCCCcEeeCCCcccCCCCCCCCeEEeccCCCCC
Q psy7478 57 EGEKRRTLTFIRIGKPALKPRPTRCVEGEGAPTRTLSVQIPLHRVHEQGVPPVVYPPSIYNHQSTLYSGTVCLNVINQEW 136 (180)
Q Consensus 57 eg~nl~~W~~~I~Gp~~~~~~p~tpy~ggg~~~f~~~I~fp~~YP~~~~pP~V~F~t~IfHPnV~~~~G~vCl~~l~e~W 136 (180)
..+|+++|+++|.||+ +|+|+|| +|+|.|.||++||+ .||+|+|.|+||||||+ .+|.||+++|.+.|
T Consensus 26 ~~~nl~~w~~~i~GP~------~tpyegg---~f~~~i~fp~~YP~--~pP~v~f~t~i~HPNv~-~~G~iCl~il~~~W 93 (147)
T PLN00172 26 SDENLFRWTASIIGPS------DSPYAGG---VFFLSILFPPDYPF--KPPKVQFTTKIYHPNIN-SNGSICLDILRDQW 93 (147)
T ss_pred CCCChheEEEEEECCC------CCCCCCC---EEEEEEECCcccCC--CCCEEEEecCcccceEC-CCCEEEcccCcCCC
Confidence 3479999999999999 9999999 99999999999999 99999999999999999 69999999999999
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCCCCccHHHHHHHhhCHHhHhC
Q psy7478 137 TPLYDLSNIFETFLPQLLTYPNPTDPLNGDAAAMYLDKPDKYKE 180 (180)
Q Consensus 137 sP~~tl~~iL~~Ii~~ll~~P~~~~p~N~eaA~ly~~d~~~F~k 180 (180)
+|++||.+||.+| ++||.+|++++|+|.+||.+|.+|++.|.+
T Consensus 94 ~p~~ti~~il~~i-~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~ 136 (147)
T PLN00172 94 SPALTVSKVLLSI-SSLLTDPNPDDPLVPEIARVFKENRSRYEA 136 (147)
T ss_pred CCcCcHHHHHHHH-HHHHhCCCCCCchHHHHHHHHHHCHHHHHH
Confidence 9999999999999 699999999999999999999999999963
No 6
>KOG0425|consensus
Probab=100.00 E-value=9.4e-35 Score=228.26 Aligned_cols=114 Identities=21% Similarity=0.439 Sum_probs=107.9
Q ss_pred hhhcCCCccceEEEEecCCCCCCCCCCCCCCCCCCeeEEEEEecCCCCCCCCCCcEeeCCCcccCCCCCCCCeEEeccCC
Q psy7478 54 KKKEGEKRRTLTFIRIGKPALKPRPTRCVEGEGAPTRTLSVQIPLHRVHEQGVPPVVYPPSIYNHQSTLYSGTVCLNVIN 133 (180)
Q Consensus 54 ~~keg~nl~~W~~~I~Gp~~~~~~p~tpy~ggg~~~f~~~I~fp~~YP~~~~pP~V~F~t~IfHPnV~~~~G~vCl~~l~ 133 (180)
+.-++.|+++|.+.|+||+ +|.|+|| +|+..+.||.+||. +||+++|.|.||||||+ .+|.||+++|-
T Consensus 28 glvd~~dif~WeV~i~gpp------dTlYeGG---~FkA~m~FP~dYP~--sPP~~rF~s~mwHPNvy-~~G~vCISILH 95 (171)
T KOG0425|consen 28 GLVDDSDIFEWEVAIIGPP------DTLYEGG---FFKAHMKFPQDYPL--SPPTFRFTSKMWHPNVY-EDGDVCISILH 95 (171)
T ss_pred ccccCCceeEEEEEEEcCC------CccccCc---eeEEEEeCcccCCC--CCCceeeehhhcCCCcC-CCCCEEEEeec
Confidence 3456789999999999999 9999999 99999999999999 99999999999999999 69999999994
Q ss_pred -------------CCCCCCCChHHHHHHHHHHHhcCCCCCCCccHHHHHHHhhCHHhHhC
Q psy7478 134 -------------QEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGDAAAMYLDKPDKYKE 180 (180)
Q Consensus 134 -------------e~WsP~~tl~~iL~~Ii~~ll~~P~~~~p~N~eaA~ly~~d~~~F~k 180 (180)
+.|+|..|+.+||++|+ +||.+||.++|+|-+||+.|++|+++|.+
T Consensus 96 ~pgdD~~gyE~~~erW~Pv~tvetIllSiI-smL~~PN~~SPANVDAa~~~Ren~~Eykk 154 (171)
T KOG0425|consen 96 PPGDDPSGYELPSERWLPVQTVETILLSII-SMLNSPNDESPANVDAAKEWRENPEEYKK 154 (171)
T ss_pred CCCCCcccCCChhhccCCccchhHhHHHHH-HHHcCCCCCCccchHHHHHHhhCHHHHHH
Confidence 36999999999999998 99999999999999999999999999974
No 7
>KOG0421|consensus
Probab=99.98 E-value=5.3e-33 Score=216.05 Aligned_cols=111 Identities=25% Similarity=0.485 Sum_probs=107.0
Q ss_pred hcCCCccceEEEEecCCCCCCCCCCCCCCCCCCeeEEEEEecCCCCCCCCCCcEeeCCCcccCCCCCCCCeEEeccCCCC
Q psy7478 56 KEGEKRRTLTFIRIGKPALKPRPTRCVEGEGAPTRTLSVQIPLHRVHEQGVPPVVYPPSIYNHQSTLYSGTVCLNVINQE 135 (180)
Q Consensus 56 keg~nl~~W~~~I~Gp~~~~~~p~tpy~ggg~~~f~~~I~fp~~YP~~~~pP~V~F~t~IfHPnV~~~~G~vCl~~l~e~ 135 (180)
.+++|++.|.++|.||. +|+|+|- .|++.+.||.+||+ .||+|.|.|++|||||| ..|.||||+|.+.
T Consensus 53 P~~dnlf~WvGtItGp~------dTvyegl---~yklSl~Fp~~YPy--~pP~vkFltpc~HPNVD-~~GnIcLDILkdK 120 (175)
T KOG0421|consen 53 PESDNLFKWVGTITGPK------DTVYEGL---KYKLSLSFPNNYPY--KPPTVKFLTPCFHPNVD-LSGNICLDILKDK 120 (175)
T ss_pred cCcCceeEEeeEeeCCC------CccccCc---EEEEEEecCCCCCC--CCCeeEeeccccCCCcc-ccccchHHHHHHH
Confidence 36789999999999999 9999999 99999999999999 99999999999999999 6999999999999
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCCCCccHHHHHHHhhCHHhHhC
Q psy7478 136 WTPLYDLSNIFETFLPQLLTYPNPTDPLNGDAAAMYLDKPDKYKE 180 (180)
Q Consensus 136 WsP~~tl~~iL~~Ii~~ll~~P~~~~p~N~eaA~ly~~d~~~F~k 180 (180)
|+..|++.+||++| |+||-+||.++|+|..||.+|. |+++|++
T Consensus 121 WSa~YdVrTILLSi-QSLLGEPNn~SPLNaqAAelW~-d~~eykk 163 (175)
T KOG0421|consen 121 WSAVYDVRTILLSI-QSLLGEPNNSSPLNAQAAELWS-DQEEYKK 163 (175)
T ss_pred HHHHHhHHHHHHHH-HHHhCCCCCCCcchhHHHHHhc-CHHHHHH
Confidence 99999999999999 8999999999999999999998 9988864
No 8
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=99.97 E-value=3.1e-32 Score=210.81 Aligned_cols=109 Identities=26% Similarity=0.561 Sum_probs=99.5
Q ss_pred CCccceEEEEecCCCCCCCCCCCCCCCCCCeeEEEEEecCCCCCCCCCCcEeeCCCcccCCCCCCCCeEEeccCCC-CCC
Q psy7478 59 EKRRTLTFIRIGKPALKPRPTRCVEGEGAPTRTLSVQIPLHRVHEQGVPPVVYPPSIYNHQSTLYSGTVCLNVINQ-EWT 137 (180)
Q Consensus 59 ~nl~~W~~~I~Gp~~~~~~p~tpy~ggg~~~f~~~I~fp~~YP~~~~pP~V~F~t~IfHPnV~~~~G~vCl~~l~e-~Ws 137 (180)
+|++.|+++|.||+ +|+|+|| +|+|.|.||++||+ +||.|+|.|+||||||+ .+|.||+++|.. .|+
T Consensus 25 ~~~~~w~~~i~gp~------~t~y~gg---~f~~~i~~p~~YP~--~pP~v~f~t~i~HPni~-~~G~icl~~l~~~~W~ 92 (140)
T PF00179_consen 25 DNLFEWHVTIFGPP------GTPYEGG---IFKFRISFPPDYPF--SPPKVRFLTPIFHPNID-ENGRICLDILNPESWS 92 (140)
T ss_dssp TETTEEEEEEEBET------TSTTTTS---EEEEEEEETTTTTT--S--EEEESSS-SBTTB--TTSBBGHGGGTTTTC-
T ss_pred CChheEEEEEeccC------ccceecc---cccccccccccccc--ccccccccccccccccc-ccccchhhhhhcccCC
Confidence 58999999999998 9999999 99999999999999 99999999999999999 799999999985 599
Q ss_pred CCCChHHHHHHHHHHHhcCCCCCCCccHHHHHHHhhCHHhHhC
Q psy7478 138 PLYDLSNIFETFLPQLLTYPNPTDPLNGDAAAMYLDKPDKYKE 180 (180)
Q Consensus 138 P~~tl~~iL~~Ii~~ll~~P~~~~p~N~eaA~ly~~d~~~F~k 180 (180)
|+++|.+||.+| ++||.+|+.++|+|.+||.+|++|++.|.+
T Consensus 93 p~~~i~~il~~i-~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~ 134 (140)
T PF00179_consen 93 PSYTIESILLSI-QSLLSEPNPEDPLNEEAAELYKNDREEFEK 134 (140)
T ss_dssp TTSHHHHHHHHH-HHHHHSTCTTSTSSHHHHHHHHHCHHHHHH
T ss_pred cccccccHHHHH-HHHHhCCCCCCcchHHHHHHHHHCHHHHHH
Confidence 999999999999 699999999999999999999999999963
No 9
>KOG0418|consensus
Probab=99.97 E-value=2.7e-32 Score=219.82 Aligned_cols=110 Identities=22% Similarity=0.442 Sum_probs=107.0
Q ss_pred CCCccceEEEEecCCCCCCCCCCCCCCCCCCeeEEEEEecCCCCCCCCCCcEeeCCCcccCCCCCCCCeEEeccCCCCCC
Q psy7478 58 GEKRRTLTFIRIGKPALKPRPTRCVEGEGAPTRTLSVQIPLHRVHEQGVPPVVYPPSIYNHQSTLYSGTVCLNVINQEWT 137 (180)
Q Consensus 58 g~nl~~W~~~I~Gp~~~~~~p~tpy~ggg~~~f~~~I~fp~~YP~~~~pP~V~F~t~IfHPnV~~~~G~vCl~~l~e~Ws 137 (180)
.+|+.+..+.|.||+ +|||+|| +|.+.|.+|++||| .||+|+|.|+||||||++.+|.||||++.+.|+
T Consensus 32 n~~~~~ikG~I~GP~------~TPYEGG---~FeldI~iPe~YPF--~pPkv~F~TkIwHPnVSs~tGaICLDilkd~Wa 100 (200)
T KOG0418|consen 32 NENLKEIKGHIAGPE------DTPYEGG---VFELDIKIPENYPF--KPPKVKFITKIWHPNVSSQTGAICLDILKDQWA 100 (200)
T ss_pred cCChhhceeEecCCC------CCCCCCc---eEEEEEecCCCCCC--CCCceeeeeeeecCCCCcccccchhhhhhcccc
Confidence 468889999999999 9999999 99999999999999 999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhcCCCCCCCccHHHHHHHhhCHHhHh
Q psy7478 138 PLYDLSNIFETFLPQLLTYPNPTDPLNGDAAAMYLDKPDKYK 179 (180)
Q Consensus 138 P~~tl~~iL~~Ii~~ll~~P~~~~p~N~eaA~ly~~d~~~F~ 179 (180)
+++||.++|++| |+||+.|++.+|.+..+|.+|.+|++.|.
T Consensus 101 ~slTlrtvLisl-QalL~~pEp~dPqDavva~qy~~n~~~F~ 141 (200)
T KOG0418|consen 101 ASLTLRTVLISL-QALLCAPEPKDPQDAVVAEQYVDNYEMFY 141 (200)
T ss_pred hhhhHHHHHHHH-HHHHcCCCCCChHHHHHHHHHhhhHHHHH
Confidence 999999999999 89999999999999999999999999996
No 10
>KOG0424|consensus
Probab=99.97 E-value=6e-32 Score=209.81 Aligned_cols=113 Identities=26% Similarity=0.429 Sum_probs=106.7
Q ss_pred hhc-CCCccceEEEEecCCCCCCCCCCCCCCCCCCeeEEEEEecCCCCCCCCCCcEeeCCCcccCCCCCCCCeEEeccCC
Q psy7478 55 KKE-GEKRRTLTFIRIGKPALKPRPTRCVEGEGAPTRTLSVQIPLHRVHEQGVPPVVYPPSIYNHQSTLYSGTVCLNVIN 133 (180)
Q Consensus 55 ~ke-g~nl~~W~~~I~Gp~~~~~~p~tpy~ggg~~~f~~~I~fp~~YP~~~~pP~V~F~t~IfHPnV~~~~G~vCl~~l~ 133 (180)
... ..|+..|++.|-|+. +|+|+|| .|.+++.||++||+ +||++.|.+++|||||+ .+|.|||++|+
T Consensus 31 ~~dg~~nl~~Wec~IPG~~------~t~wEGg---~y~l~v~F~~dyP~--~PPkckF~~pl~HPNVy-psgtVcLsiL~ 98 (158)
T KOG0424|consen 31 NADGTLNLMNWECGIPGKK------GTPWEGG---LYKLTVNFPDDYPS--SPPKCKFKPPLFHPNVY-PSGTVCLSILN 98 (158)
T ss_pred CCCCcceeEEEEeecCCCC------CCcCcCc---eEEEEEeCCccCCC--CCCccccCCCCcCCCcC-CCCcEehhhhc
Confidence 344 349999999999999 9999999 99999999999999 99999999999999999 59999999998
Q ss_pred CC--CCCCCChHHHHHHHHHHHhcCCCCCCCccHHHHHHHhhCHHhHhC
Q psy7478 134 QE--WTPLYDLSNIFETFLPQLLTYPNPTDPLNGDAAAMYLDKPDKYKE 180 (180)
Q Consensus 134 e~--WsP~~tl~~iL~~Ii~~ll~~P~~~~p~N~eaA~ly~~d~~~F~k 180 (180)
++ |+|+.||.+||++| |.||..||+.+|+|.+|..+|.+||..|.+
T Consensus 99 e~~~W~paitikqiL~gI-qdLL~~Pn~~~pAq~eA~~~~~~~r~eYek 146 (158)
T KOG0424|consen 99 EEKDWRPAITIKQILLGI-QDLLDTPNITSPAQTEAYTIYCQDRAEYEK 146 (158)
T ss_pred cccCCCchhhHHHHHHHH-HHHhcCCCCCCchhhHHHHHHhhCHHHHHH
Confidence 64 99999999999999 899999999999999999999999999964
No 11
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=99.97 E-value=3.7e-31 Score=205.25 Aligned_cols=111 Identities=28% Similarity=0.550 Sum_probs=105.5
Q ss_pred cCCCccceEEEEecCCCCCCCCCCCCCCCCCCeeEEEEEecCCCCCCCCCCcEeeCCCcccCCCCCCCCeEEeccCCCC-
Q psy7478 57 EGEKRRTLTFIRIGKPALKPRPTRCVEGEGAPTRTLSVQIPLHRVHEQGVPPVVYPPSIYNHQSTLYSGTVCLNVINQE- 135 (180)
Q Consensus 57 eg~nl~~W~~~I~Gp~~~~~~p~tpy~ggg~~~f~~~I~fp~~YP~~~~pP~V~F~t~IfHPnV~~~~G~vCl~~l~e~- 135 (180)
..+|+++|+++|.|++ +|+|.|| +|+|.|.||++||+ +||.|+|.+++|||||+ .+|.||++++...
T Consensus 24 ~~~~~~~w~~~i~g~~------~t~y~g~---~~~~~~~~p~~yP~--~pP~v~f~~~i~HpnV~-~~G~icl~~l~~~~ 91 (141)
T cd00195 24 VEENLLEWHGTIRGPP------DTPYEGG---IFKLDIEFPEDYPF--KPPKVRFVTKIYHPNVD-ENGKICLSILKTHG 91 (141)
T ss_pred CCCChhEEEEEEecCC------CCCccCC---EEEEEEECCCccCC--CCCeEEEeCCcccCCCC-CCCCCchhhcCCCC
Confidence 3459999999999998 9999998 99999999999999 99999999999999999 7999999999876
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCCCCccHHHHHHHhhCHHhHhC
Q psy7478 136 WTPLYDLSNIFETFLPQLLTYPNPTDPLNGDAAAMYLDKPDKYKE 180 (180)
Q Consensus 136 WsP~~tl~~iL~~Ii~~ll~~P~~~~p~N~eaA~ly~~d~~~F~k 180 (180)
|+|+++|.+||.+| +++|.+|+.++|+|.+||.+|++|++.|.+
T Consensus 92 W~p~~~l~~il~~i-~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~ 135 (141)
T cd00195 92 WSPAYTLRTVLLSL-QSLLNEPNPSDPLNAEAAKLYKENREEFKK 135 (141)
T ss_pred cCCcCcHHHHHHHH-HHHHhCCCCCCchhHHHHHHHHHCHHHHHH
Confidence 99999999999999 599999999999999999999999999964
No 12
>KOG0416|consensus
Probab=99.97 E-value=6.4e-32 Score=214.79 Aligned_cols=113 Identities=44% Similarity=0.780 Sum_probs=109.1
Q ss_pred cCCCccceEEEEecCCCCCCCCCCCCCCCCCCeeEEEEEecCCCCCCCCCCcEeeCCCcccCCCCCCCCeEEeccCCCCC
Q psy7478 57 EGEKRRTLTFIRIGKPALKPRPTRCVEGEGAPTRTLSVQIPLHRVHEQGVPPVVYPPSIYNHQSTLYSGTVCLNVINQEW 136 (180)
Q Consensus 57 eg~nl~~W~~~I~Gp~~~~~~p~tpy~ggg~~~f~~~I~fp~~YP~~~~pP~V~F~t~IfHPnV~~~~G~vCl~~l~e~W 136 (180)
.++++.+.+|.+.||. +|+|+|| +++++|.+|++||+ +.|+|.|+++||||||+..+|.|||+++++.|
T Consensus 25 ind~m~ef~V~f~GP~------ds~YegG---vWkv~V~lPd~YP~--KSPSIGFvnKIfHPNIDe~SGsVCLDViNQtW 93 (189)
T KOG0416|consen 25 INDGMQEFYVKFHGPK------DSPYEGG---VWKVRVELPDNYPF--KSPSIGFVNKIFHPNIDEASGSVCLDVINQTW 93 (189)
T ss_pred ecCcccEEEEEeeCCC------CCcccCc---eEEEEEECCCCCCC--CCCcccceeeccCCCchhccCccHHHHHhhhh
Confidence 3567999999999999 9999999 99999999999999 99999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCCCCccHHHHHHHhhCHHhHhC
Q psy7478 137 TPLYDLSNIFETFLPQLLTYPNPTDPLNGDAAAMYLDKPDKYKE 180 (180)
Q Consensus 137 sP~~tl~~iL~~Ii~~ll~~P~~~~p~N~eaA~ly~~d~~~F~k 180 (180)
+|.|+|..|+..++-.||..||+.||+|.+||.+|.++++.|.+
T Consensus 94 Sp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~ 137 (189)
T KOG0416|consen 94 SPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEE 137 (189)
T ss_pred hHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHH
Confidence 99999999999999999999999999999999999999999963
No 13
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=99.97 E-value=2.1e-30 Score=201.81 Aligned_cols=109 Identities=28% Similarity=0.564 Sum_probs=104.7
Q ss_pred CCccceEEEEecCCCCCCCCCCCCCCCCCCeeEEEEEecCCCCCCCCCCcEeeCCCcccCCCCCCCCeEEeccCC-CCCC
Q psy7478 59 EKRRTLTFIRIGKPALKPRPTRCVEGEGAPTRTLSVQIPLHRVHEQGVPPVVYPPSIYNHQSTLYSGTVCLNVIN-QEWT 137 (180)
Q Consensus 59 ~nl~~W~~~I~Gp~~~~~~p~tpy~ggg~~~f~~~I~fp~~YP~~~~pP~V~F~t~IfHPnV~~~~G~vCl~~l~-e~Ws 137 (180)
+|+++|+++|.||+ +|+|.|| +|+|.|.||++||+ .||.|+|.+++|||||+ .+|.||++++. ++|+
T Consensus 26 ~~~~~w~~~i~gp~------~~~y~g~---~f~~~l~~p~~yP~--~pP~v~f~~~i~Hp~i~-~~G~icl~~l~~~~W~ 93 (145)
T smart00212 26 DNLLEWTGTIVGPP------GTPYEGG---IFKLTIEFPPDYPF--KPPKVKFITKIYHPNVD-SSGEICLDILKQEKWS 93 (145)
T ss_pred CChheEEEEEEcCC------CCCcCCc---EEEEEEECCcccCC--CCCEEEEeCCceEeeEC-CCCCEehhhcCCCCCC
Confidence 38999999999999 9999998 99999999999999 99999999999999999 59999999998 8999
Q ss_pred CCCChHHHHHHHHHHHhcCCCCCCCccHHHHHHHhhCHHhHhC
Q psy7478 138 PLYDLSNIFETFLPQLLTYPNPTDPLNGDAAAMYLDKPDKYKE 180 (180)
Q Consensus 138 P~~tl~~iL~~Ii~~ll~~P~~~~p~N~eaA~ly~~d~~~F~k 180 (180)
|+++|.+||.+| ++||.+|+.++|+|.+||.+|++|++.|.+
T Consensus 94 p~~~l~~il~~i-~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~ 135 (145)
T smart00212 94 PATTLETVLLSI-QSLLSEPNPDSPLNADAATLYKKNREEFKK 135 (145)
T ss_pred CCCcHHHHHHHH-HHHHhCCCCCCcccHHHHHHHHHCHHHHHH
Confidence 999999999999 699999999999999999999999999963
No 14
>KOG0426|consensus
Probab=99.96 E-value=1e-29 Score=195.36 Aligned_cols=112 Identities=18% Similarity=0.421 Sum_probs=106.6
Q ss_pred hcCCCccceEEEEecCCCCCCCCCCCCCCCCCCeeEEEEEecCCCCCCCCCCcEeeCCCcccCCCCCCCCeEEeccCC--
Q psy7478 56 KEGEKRRTLTFIRIGKPALKPRPTRCVEGEGAPTRTLSVQIPLHRVHEQGVPPVVYPPSIYNHQSTLYSGTVCLNVIN-- 133 (180)
Q Consensus 56 keg~nl~~W~~~I~Gp~~~~~~p~tpy~ggg~~~f~~~I~fp~~YP~~~~pP~V~F~t~IfHPnV~~~~G~vCl~~l~-- 133 (180)
+..+|+++|.+.|.||+ +|||+|| +|..+|.||.+||. +||+++|...+|||||+ .+|+||+++|-
T Consensus 29 ~~EdnfF~W~cLI~GP~------~T~f~~G---vfpA~l~FP~DYPL--sPPkm~Ftc~~fHPNiy-~dG~VCISILHaP 96 (165)
T KOG0426|consen 29 INEDNFFEWECLIQGPE------DTCFEGG---VFPARLSFPLDYPL--SPPKMRFTCEMFHPNIY-PDGRVCISILHAP 96 (165)
T ss_pred CCccceeeeeeeeeCCC------CCcccCC---ccceeeecCCCCCC--CCCceeeecccccCccc-CCCeEEEEEeeCC
Confidence 55689999999999999 9999999 99999999999999 99999999999999999 69999999983
Q ss_pred -----------CCCCCCCChHHHHHHHHHHHhcCCCCCCCccHHHHHHHhhCHHhHhC
Q psy7478 134 -----------QEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGDAAAMYLDKPDKYKE 180 (180)
Q Consensus 134 -----------e~WsP~~tl~~iL~~Ii~~ll~~P~~~~p~N~eaA~ly~~d~~~F~k 180 (180)
+.|+|..++..||++++ +||.+||.++++|.+|+.+|++||++|.+
T Consensus 97 GDDP~~YEls~ERWSPVQSvEKILLSV~-SMLaEPNdESgANvdA~~mWRe~R~ef~~ 153 (165)
T KOG0426|consen 97 GDDPMGYELSAERWSPVQSVEKILLSVV-SMLAEPNDESGANVDACKMWREDREEFEK 153 (165)
T ss_pred CCCCccchhhhhcCChHHHHHHHHHHHH-HHHcCCCcccCcccHHHHHHHHhHHHHHH
Confidence 36999999999999997 99999999999999999999999999974
No 15
>KOG0422|consensus
Probab=99.95 E-value=5.7e-28 Score=186.80 Aligned_cols=115 Identities=21% Similarity=0.430 Sum_probs=106.0
Q ss_pred HHhhhcCCCccceEEEEecCCCCCCCCCCCCCCCCCCeeEEEEEecCCCCCCCCCCcEeeCCCcccCCCCCCCCeEEecc
Q psy7478 52 EEKKKEGEKRRTLTFIRIGKPALKPRPTRCVEGEGAPTRTLSVQIPLHRVHEQGVPPVVYPPSIYNHQSTLYSGTVCLNV 131 (180)
Q Consensus 52 ~~~~keg~nl~~W~~~I~Gp~~~~~~p~tpy~ggg~~~f~~~I~fp~~YP~~~~pP~V~F~t~IfHPnV~~~~G~vCl~~ 131 (180)
+.=..+..|++.|++.|++- +-||..| .|++.|.||.+||| +||.|.|.|+||||||| ..|.||+.+
T Consensus 23 rn~~~~e~nll~wt~llipd-------~ppY~kg---aF~l~I~fp~eYPF--KPP~i~f~tkiYHpNVD-e~gqvClPi 89 (153)
T KOG0422|consen 23 RNIEVDEANLLKWTGLLIPD-------KPPYNKG---AFRLEIDFPVEYPF--KPPKIKFKTKIYHPNVD-EKGQVCLPI 89 (153)
T ss_pred hhhhcccccceeEEeEecCC-------CCCccCc---ceEEEeeCCCCCCC--CCCeeeeeeeeccCCCC-CCCceeeee
Confidence 33445667999999999955 7899998 99999999999999 99999999999999999 579999999
Q ss_pred CC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCccHHHHHHHhhCHHhHhC
Q psy7478 132 IN-QEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGDAAAMYLDKPDKYKE 180 (180)
Q Consensus 132 l~-e~WsP~~tl~~iL~~Ii~~ll~~P~~~~p~N~eaA~ly~~d~~~F~k 180 (180)
+. ++|.|+.++.+||+.++ +|+.+|+++.|++.++|..|.+|+..|.+
T Consensus 90 is~EnWkP~T~teqVlqaLi-~liN~P~pe~plr~dlA~ey~~d~~kF~K 138 (153)
T KOG0422|consen 90 ISAENWKPATRTEQVLQALI-ALINDPEPEHPLRIDLAEEYIKDPKKFVK 138 (153)
T ss_pred eecccccCcccHHHHHHHHH-HHhcCCCccccchhhHHHHHHHCHHHHHH
Confidence 95 89999999999999997 99999999999999999999999999864
No 16
>KOG0420|consensus
Probab=99.95 E-value=3.9e-28 Score=193.35 Aligned_cols=95 Identities=27% Similarity=0.537 Sum_probs=90.6
Q ss_pred CCCCCCCCCCeeEEEEEecCCCCCCCCCCcEeeCCCcccCCCCCCCCeEEeccCCCCCCCCCChHHHHHHHHHHHhcCCC
Q psy7478 79 TRCVEGEGAPTRTLSVQIPLHRVHEQGVPPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPN 158 (180)
Q Consensus 79 ~tpy~ggg~~~f~~~I~fp~~YP~~~~pP~V~F~t~IfHPnV~~~~G~vCl~~l~e~WsP~~tl~~iL~~Ii~~ll~~P~ 158 (180)
+.+|+.|| .|.|.+.+|+.||+ .||+|.++|.||||||| -+|.|||++|.++|+|..+|.+|+.++ +.||.+|+
T Consensus 69 dEGyY~gG--kf~F~~~v~~~Yp~--~PPKVkCltkV~HPNId-~~GnVCLnILRedW~P~lnL~sIi~GL-~~LF~epn 142 (184)
T KOG0420|consen 69 DEGYYQGG--KFRFKFKVPNAYPH--EPPKVKCLTKVYHPNID-LDGNVCLNILREDWRPVLNLNSIIYGL-QFLFLEPN 142 (184)
T ss_pred CcceecCc--eEEEEEECCCCCCC--CCCeeeeeeccccCCcC-CcchHHHHHHHhcCccccchHHHHHHH-HHHhccCC
Confidence 66777664 99999999999999 99999999999999999 599999999999999999999999999 69999999
Q ss_pred CCCCccHHHHHHHhhCHHhHh
Q psy7478 159 PTDPLNGDAAAMYLDKPDKYK 179 (180)
Q Consensus 159 ~~~p~N~eaA~ly~~d~~~F~ 179 (180)
++||+|.+||.+++.|++.|.
T Consensus 143 ~eDpLN~eAA~~l~~n~e~F~ 163 (184)
T KOG0420|consen 143 PEDPLNKEAAAVLKSNREGFE 163 (184)
T ss_pred CcccccHHHHHHHHhCHHHHH
Confidence 999999999999999999996
No 17
>KOG0423|consensus
Probab=99.88 E-value=5.9e-24 Score=170.07 Aligned_cols=109 Identities=21% Similarity=0.386 Sum_probs=103.3
Q ss_pred CCccceEEEEecCCCCCCCCCCCCCCCCCCeeEEEEEecCCCCCCCCCCcEeeCCCcccCCCCCCCCeEEeccCCCCCCC
Q psy7478 59 EKRRTLTFIRIGKPALKPRPTRCVEGEGAPTRTLSVQIPLHRVHEQGVPPVVYPPSIYNHQSTLYSGTVCLNVINQEWTP 138 (180)
Q Consensus 59 ~nl~~W~~~I~Gp~~~~~~p~tpy~ggg~~~f~~~I~fp~~YP~~~~pP~V~F~t~IfHPnV~~~~G~vCl~~l~e~WsP 138 (180)
+|+....+.|.||. +|||.+| +|++.+.+..+||. +||+-+|+|+||||||- .+|.||++.|..+|+|
T Consensus 37 eD~tdiqa~IeGP~------GTPYa~G---lFRmKL~L~kDFP~--sPPKgYFlTKIFHPNVa-aNGEICVNtLKkDW~p 104 (223)
T KOG0423|consen 37 EDFTDIQADIEGPV------GTPYANG---LFRMKLALSKDFPH--SPPKGYFLTKIFHPNVA-ANGEICVNTLKKDWNP 104 (223)
T ss_pred HHhHHHHhhccCCC------CCccccc---eeeehhhhcCCCCC--CCCcceeeeeeccCCcc-cCceehhhhhhcccCc
Confidence 35666778899998 9999998 99999999999999 99999999999999999 7999999999999999
Q ss_pred CCChHHHHHHHHHHHhcCCCCCCCccHHHHHHHhhCHHhHhC
Q psy7478 139 LYDLSNIFETFLPQLLTYPNPTDPLNGDAAAMYLDKPDKYKE 180 (180)
Q Consensus 139 ~~tl~~iL~~Ii~~ll~~P~~~~p~N~eaA~ly~~d~~~F~k 180 (180)
.+.|..||+.| .+||..|++++.+|.+|.+++.+|++.|.+
T Consensus 105 ~LGirHvLlti-kCLLI~PnPESALNEeAGkmLLEnYdeYa~ 145 (223)
T KOG0423|consen 105 SLGIRHVLLTI-KCLLIEPNPESALNEEAGKMLLENYDEYAR 145 (223)
T ss_pred ccchhhHhhhh-heeeecCChHHHHhHHHHHHHHHhHHHHHH
Confidence 99999999999 799999999999999999999999999863
No 18
>KOG0427|consensus
Probab=99.84 E-value=5e-21 Score=147.27 Aligned_cols=99 Identities=19% Similarity=0.402 Sum_probs=88.2
Q ss_pred hcCCCccceEEEEecCCCCCCCCCCCCCCCCCCeeEEEEEecCCCCCCCCCCcEeeCCCc-ccCCCCCCCCeEEeccCCC
Q psy7478 56 KEGEKRRTLTFIRIGKPALKPRPTRCVEGEGAPTRTLSVQIPLHRVHEQGVPPVVYPPSI-YNHQSTLYSGTVCLNVINQ 134 (180)
Q Consensus 56 keg~nl~~W~~~I~Gp~~~~~~p~tpy~ggg~~~f~~~I~fp~~YP~~~~pP~V~F~t~I-fHPnV~~~~G~vCl~~l~e 134 (180)
+..+||.+|.+.+.|.+ +|.|.+. +|.|.+.||..||+ ..|.|.|+.++ .||+|+ ++|.|||++|.+
T Consensus 38 ~v~dnlqqWii~v~Ga~------GTLYa~e---~~qLq~~F~~~YP~--esPqVmF~~~~P~HPHiY-SNGHICL~iL~d 105 (161)
T KOG0427|consen 38 RVTDNLQQWIIEVTGAP------GTLYANE---TYQLQVEFPEHYPM--ESPQVMFVGPAPLHPHIY-SNGHICLDILYD 105 (161)
T ss_pred ecccchheeEEEEecCC------ceeecCc---EEEEEEecCCCCCC--CCCeEEEecCCCCCCcee-cCCeEEEEeecc
Confidence 47889999999999999 9999999 99999999999999 99999999775 799999 799999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhc-CCCCCCCccHHH
Q psy7478 135 EWTPLYDLSNIFETFLPQLLT-YPNPTDPLNGDA 167 (180)
Q Consensus 135 ~WsP~~tl~~iL~~Ii~~ll~-~P~~~~p~N~ea 167 (180)
.|+|++++.+|+++|+ +||+ .+.-..|.+.+.
T Consensus 106 ~WsPAmsv~SvClSIl-SMLSSs~eKqrP~Dn~~ 138 (161)
T KOG0427|consen 106 SWSPAMSVQSVCLSIL-SMLSSSKEKQRPTDNDR 138 (161)
T ss_pred cCCcchhhHHHHHHHH-HHHccCccccCCCccch
Confidence 9999999999999998 6655 555555655443
No 19
>KOG0429|consensus
Probab=99.83 E-value=1.7e-20 Score=155.00 Aligned_cols=110 Identities=16% Similarity=0.259 Sum_probs=100.2
Q ss_pred CCccceEEEEecCCCCCCCCCCCCCCCCCCeeEEEEEecCCCCCCCCCCcEeeCCCcccCCCCCCCCeEEeccCCCCCCC
Q psy7478 59 EKRRTLTFIRIGKPALKPRPTRCVEGEGAPTRTLSVQIPLHRVHEQGVPPVVYPPSIYNHQSTLYSGTVCLNVINQEWTP 138 (180)
Q Consensus 59 ~nl~~W~~~I~Gp~~~~~~p~tpy~ggg~~~f~~~I~fp~~YP~~~~pP~V~F~t~IfHPnV~~~~G~vCl~~l~e~WsP 138 (180)
.|-+.|.++||+. ...|.|| +|+|+|.+|++||.+.+.|+|.|.+.+|||+|++.++.+|++.....|+.
T Consensus 46 an~l~WFGViFvr-------~Giyagg---VFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~skeLdl~raf~eWRk 115 (258)
T KOG0429|consen 46 ANKLLWFGVIFVR-------KGIYAGG---VFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPKSKELDLNRAFPEWRK 115 (258)
T ss_pred cccceEEEEEEEe-------cccccCc---eEEEEEEcCccCCCcCCCCeEEeeccccccccCCCccceeHhhhhhhhhc
Confidence 4778999999999 4667777 99999999999998789999999999999999999999999999888987
Q ss_pred C-CChHHHHHHHHHHHhcCCCCCCC--ccHHHHHHHhhCHHhHh
Q psy7478 139 L-YDLSNIFETFLPQLLTYPNPTDP--LNGDAAAMYLDKPDKYK 179 (180)
Q Consensus 139 ~-~tl~~iL~~Ii~~ll~~P~~~~p--~N~eaA~ly~~d~~~F~ 179 (180)
. ..|+.+|..+ |.+|.+|+.+.+ .|++||.||+++++.|.
T Consensus 116 ~ehhiwqvL~yl-qriF~dpd~si~kl~N~eAa~l~~k~r~ef~ 158 (258)
T KOG0429|consen 116 EEHHIWQVLVYL-QRIFYDPDVSIDKLINPEAAVLYKKHRDEFR 158 (258)
T ss_pred cccHHHHHHHHH-HHHhcCcccchhhhcChHHHHHHHHhHHHHH
Confidence 6 5788899988 899999998876 59999999999999996
No 20
>KOG0894|consensus
Probab=99.72 E-value=2.7e-17 Score=135.61 Aligned_cols=85 Identities=13% Similarity=0.221 Sum_probs=72.8
Q ss_pred cCCCccceEEEEecCCCCCCCCCCCCCCCCCCeeEEEEEecCCCCCCCCCCcEeeCCCcccCCCCCCCCeEEeccCC---
Q psy7478 57 EGEKRRTLTFIRIGKPALKPRPTRCVEGEGAPTRTLSVQIPLHRVHEQGVPPVVYPPSIYNHQSTLYSGTVCLNVIN--- 133 (180)
Q Consensus 57 eg~nl~~W~~~I~Gp~~~~~~p~tpy~ggg~~~f~~~I~fp~~YP~~~~pP~V~F~t~IfHPnV~~~~G~vCl~~l~--- 133 (180)
.-+||++||.+|.||+ +|||+|| .|+.+|.||.+||+ +||.|+++|+--.-- .+-++||++..
T Consensus 30 ~p~nILEWHYvl~Gpe------dTPy~GG---~YhGkl~FP~eyP~--KPPaI~MiTPNGRFk---tntRLCLSiSDfHP 95 (244)
T KOG0894|consen 30 NPNNILEWHYVLRGPE------DTPYYGG---YYHGKLIFPPEYPF--KPPAITMITPNGRFK---TNTRLCLSISDFHP 95 (244)
T ss_pred CccceeeeEEEeeCCC------CCCccCc---eeeeEEeCCCCCCC--CCCeeEEECCCCcee---cCceEEEeccccCc
Confidence 4579999999999999 9999999 99999999999999 999999998732211 23479999885
Q ss_pred CCCCCCCChHHHHHHHHHHHhc
Q psy7478 134 QEWTPLYDLSNIFETFLPQLLT 155 (180)
Q Consensus 134 e~WsP~~tl~~iL~~Ii~~ll~ 155 (180)
+.|+|.|++.+||.+++..|+.
T Consensus 96 dsWNP~WsVStILtGLlSFM~e 117 (244)
T KOG0894|consen 96 DSWNPGWSVSTILTGLLSFMTE 117 (244)
T ss_pred CcCCCcccHHHHHHHHHHHHhc
Confidence 7899999999999999844444
No 21
>KOG0428|consensus
Probab=99.58 E-value=5e-15 Score=124.54 Aligned_cols=87 Identities=15% Similarity=0.305 Sum_probs=75.8
Q ss_pred CCCccceEEEEecCCCCCCCCCCCCCCCCCCeeEEEEEecCCCCCCCCCCcEeeCCCcccCCCCCCCCeEEeccCC---C
Q psy7478 58 GEKRRTLTFIRIGKPALKPRPTRCVEGEGAPTRTLSVQIPLHRVHEQGVPPVVYPPSIYNHQSTLYSGTVCLNVIN---Q 134 (180)
Q Consensus 58 g~nl~~W~~~I~Gp~~~~~~p~tpy~ggg~~~f~~~I~fp~~YP~~~~pP~V~F~t~IfHPnV~~~~G~vCl~~l~---e 134 (180)
.+||++|+++|.||+ +|-|+|| +|+.+|.||.+||+ +||.+..+|+--.--+ +-.|||++.+ +
T Consensus 36 EdNlFEWhFtiRGp~------dtdFeGG---iYHGRI~lPadYPm--KPPs~iLLTpNGRFE~---nkKiCLSISgyHPE 101 (314)
T KOG0428|consen 36 EDNLFEWHFTIRGPP------DTDFEGG---IYHGRIVLPADYPM--KPPSIILLTPNGRFEV---NKKICLSISGYHPE 101 (314)
T ss_pred hhceeeEEEEeeCCC------CCCccCc---eeeeeEecCCCCCC--CCCeEEEEcCCCceee---CceEEEEecCCCcc
Confidence 479999999999999 9999999 99999999999999 9999998886433332 4589999986 7
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCC
Q psy7478 135 EWTPLYDLSNIFETFLPQLLTYPN 158 (180)
Q Consensus 135 ~WsP~~tl~~iL~~Ii~~ll~~P~ 158 (180)
.|.|.|+|.+.|+.|+.+|=+.|+
T Consensus 102 tWqPSWSiRTALlAlIgFmPt~p~ 125 (314)
T KOG0428|consen 102 TWQPSWSIRTALLALIGFMPTKPE 125 (314)
T ss_pred ccCcchhHHHHHHHHHccccCCCC
Confidence 899999999999999866666774
No 22
>KOG0896|consensus
Probab=99.26 E-value=6.4e-12 Score=97.06 Aligned_cols=90 Identities=17% Similarity=0.174 Sum_probs=78.9
Q ss_pred ccceEEEEecCCCCCCCCCCCCCCCCCCeeEEEEEecCCCCCCCCCCcEeeCCCcccCCCCCCCCeEEeccC--CCCCCC
Q psy7478 61 RRTLTFIRIGKPALKPRPTRCVEGEGAPTRTLSVQIPLHRVHEQGVPPVVYPPSIYNHQSTLYSGTVCLNVI--NQEWTP 138 (180)
Q Consensus 61 l~~W~~~I~Gp~~~~~~p~tpy~ggg~~~f~~~I~fp~~YP~~~~pP~V~F~t~IfHPnV~~~~G~vCl~~l--~e~WsP 138 (180)
+..|.++|+||+ .|.|++. +|.|.|.+.++||. .||+|+|.++|..+.|+..+|.|.-..+ ...|+.
T Consensus 38 l~rWtg~IiGPp------rT~yEnR---iysLKI~Cgp~YPe--~PP~vrf~tkinm~gvn~~~g~Vd~~~i~~L~~W~~ 106 (138)
T KOG0896|consen 38 LTRWTGTIIGPP------RTMYENR---IYSLKIECGPKYPE--LPPTVRFGTKINMNGVNSSNGVVDPRDITVLARWQR 106 (138)
T ss_pred EeeeccceeCCC------Ccccccc---eeeEEEecCCCCCC--CCceeEEEEEeeecccccCCCccCccccchhhcccc
Confidence 468999999999 9999999 99999999999999 9999999999999999988888876444 379999
Q ss_pred CCChHHHHHHHHHHHhcCCCCCC
Q psy7478 139 LYDLSNIFETFLPQLLTYPNPTD 161 (180)
Q Consensus 139 ~~tl~~iL~~Ii~~ll~~P~~~~ 161 (180)
.|++..+|..+...|+..-|..-
T Consensus 107 ~y~~~~vl~~lr~~m~~~eN~kl 129 (138)
T KOG0896|consen 107 SYSIKMVLGQLRKEMMSKENRKL 129 (138)
T ss_pred cchhhHHHHhhhHHHHHHHhhcc
Confidence 99999999999666666555443
No 23
>KOG0895|consensus
Probab=99.18 E-value=2.3e-11 Score=118.37 Aligned_cols=79 Identities=20% Similarity=0.343 Sum_probs=70.8
Q ss_pred eEEEEecCCCCCCCCCCCCCCCCCCeeEEEEEecCCCCCCCCCCcEeeCCC--cccCCCCCCCCeEEeccCC-------C
Q psy7478 64 LTFIRIGKPALKPRPTRCVEGEGAPTRTLSVQIPLHRVHEQGVPPVVYPPS--IYNHQSTLYSGTVCLNVIN-------Q 134 (180)
Q Consensus 64 W~~~I~Gp~~~~~~p~tpy~ggg~~~f~~~I~fp~~YP~~~~pP~V~F~t~--IfHPnV~~~~G~vCl~~l~-------e 134 (180)
..++|.|+. +|||..| .|.|.|.||.+||. .||.|.+.+- .++||.+ ..|+|||++|+ +
T Consensus 883 ~~~~~~g~~------~tpy~~~---~f~fd~~~~~~yp~--~pp~~~~~s~~~r~npnly-~~g~vc~s~l~tw~g~~~e 950 (1101)
T KOG0895|consen 883 LRAVIVGAA------GTPYQDG---LFFFDFQFPQDYPS--SPPLVHYHSGGVRLNPNLY-EDGKVCLSLLNTWHGRGNE 950 (1101)
T ss_pred HHHHhhCCC------CCccccc---eEEEEeecCCCCCC--CCCceEeecCceeeCcccc-cccceehhhhccccCCCcc
Confidence 456778887 9999998 99999999999999 9999999865 5799999 69999999996 4
Q ss_pred CCCCCCChHHHHHHHHHHHhc
Q psy7478 135 EWTPLYDLSNIFETFLPQLLT 155 (180)
Q Consensus 135 ~WsP~~tl~~iL~~Ii~~ll~ 155 (180)
-|+|..+|.++|.+| |.|+.
T Consensus 951 ~w~~~s~~lq~l~s~-q~l~l 970 (1101)
T KOG0895|consen 951 VWNPSSSILQVLVSI-QGLVL 970 (1101)
T ss_pred ccCcchhHHHHHHHh-hhhhc
Confidence 699999999999999 68766
No 24
>KOG0895|consensus
Probab=98.89 E-value=3.9e-09 Score=103.09 Aligned_cols=85 Identities=21% Similarity=0.321 Sum_probs=75.7
Q ss_pred CccceEEEEecCCCCCCCCCCCCCCCCCCeeEEEEEecCCCCCCCCCCcEeeCCC---cccCCCCCCCCeEEeccCC---
Q psy7478 60 KRRTLTFIRIGKPALKPRPTRCVEGEGAPTRTLSVQIPLHRVHEQGVPPVVYPPS---IYNHQSTLYSGTVCLNVIN--- 133 (180)
Q Consensus 60 nl~~W~~~I~Gp~~~~~~p~tpy~ggg~~~f~~~I~fp~~YP~~~~pP~V~F~t~---IfHPnV~~~~G~vCl~~l~--- 133 (180)
.+...+++|.|+. +|||.+| +|.|.|.||..||. .||.|.+.|. .+.||.+ .+|+||+++|.
T Consensus 310 RMd~I~alIig~~------gtPy~~g---lf~Fdiq~P~~yPa--~pp~v~~lt~~~~R~nPNlY-n~GKVcLslLgTwt 377 (1101)
T KOG0895|consen 310 RMDLIKALIIGPD------GTPYADG---LFLFDIQFPDTYPA--VPPHVKYLTGGGVRLNPNLY-NDGKVCLSLLGTWT 377 (1101)
T ss_pred ccceeeeEEecCC------CCCCcCC---ceeeEeecCCCCCC--CCceeEEeeccceeecCCcc-cCceEEeeeeeecc
Confidence 4456789999999 9999999 99999999999999 9999999987 6799999 59999999984
Q ss_pred ----CCCCCC-CChHHHHHHHHHHHhcCC
Q psy7478 134 ----QEWTPL-YDLSNIFETFLPQLLTYP 157 (180)
Q Consensus 134 ----e~WsP~-~tl~~iL~~Ii~~ll~~P 157 (180)
+.|+|. .+|.++|.+| |.|+.+-
T Consensus 378 g~~~e~wtp~~~sl~qvL~sI-Q~Li~~e 405 (1101)
T KOG0895|consen 378 GSRREKWTPNGSSLLQVLESI-QGLILNE 405 (1101)
T ss_pred cccccCCCccccchhhhhhhh-hhhhccc
Confidence 579999 8999999999 6777643
No 25
>KOG0897|consensus
Probab=98.32 E-value=6.4e-07 Score=67.78 Aligned_cols=75 Identities=13% Similarity=0.180 Sum_probs=56.2
Q ss_pred eeEEEEEecCCCCCCCCCCcEeeCCCcccCCCCCCCCeEEeccCC-CCCCCCCChHHHHHHHHHHHhcCC--CCCCCccH
Q psy7478 89 TRTLSVQIPLHRVHEQGVPPVVYPPSIYNHQSTLYSGTVCLNVIN-QEWTPLYDLSNIFETFLPQLLTYP--NPTDPLNG 165 (180)
Q Consensus 89 ~f~~~I~fp~~YP~~~~pP~V~F~t~IfHPnV~~~~G~vCl~~l~-e~WsP~~tl~~iL~~Ii~~ll~~P--~~~~p~N~ 165 (180)
..-+.+.|+++||+ .||.++...++..-..-..+|+||+.++. ++|+.+|++..++++|. +++-.- -...|++.
T Consensus 12 ~ill~~~f~~~fp~--~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qia-atlVkG~~ri~~~a~k 88 (122)
T KOG0897|consen 12 NILLLDIFDDNFPF--MPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIA-ATLVKGGARIEFPAEK 88 (122)
T ss_pred eeEeeeecccCCCC--CCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHH-HHhhccceeEecCcch
Confidence 55677889999999 99999866554433333458999999995 79999999999999995 665543 34455554
Q ss_pred H
Q psy7478 166 D 166 (180)
Q Consensus 166 e 166 (180)
+
T Consensus 89 ~ 89 (122)
T KOG0897|consen 89 S 89 (122)
T ss_pred h
Confidence 4
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.12 E-value=9.4e-06 Score=62.64 Aligned_cols=63 Identities=19% Similarity=0.277 Sum_probs=55.2
Q ss_pred eeEEEEEecCCCCCCCCCCcEeeCCCc---ccCCCCCCCCeEEe---ccCCCCCCCCCChHHHHHHHHHHHhc
Q psy7478 89 TRTLSVQIPLHRVHEQGVPPVVYPPSI---YNHQSTLYSGTVCL---NVINQEWTPLYDLSNIFETFLPQLLT 155 (180)
Q Consensus 89 ~f~~~I~fp~~YP~~~~pP~V~F~t~I---fHPnV~~~~G~vCl---~~l~e~WsP~~tl~~iL~~Ii~~ll~ 155 (180)
.|.+.|.||+.||. .||.|....+. +-|||+ .+|.||+ ...-+.|.|.-++..+|.++. .+|.
T Consensus 37 ~~~l~l~~p~~FP~--~pp~v~l~d~~~~~~~pHv~-~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~-~lL~ 105 (133)
T PF14461_consen 37 PFPLRLVFPDDFPY--LPPRVYLEDPKQFPLLPHVE-SDGKLCLLDEELVLDPWDPEGIIADCLERAI-RLLE 105 (133)
T ss_pred EEEEEEEECCcccC--cCCEEEecCccccCccCeEc-CCCeEEEecCCcccCccCHHHHHHHHHHHHH-HHHH
Confidence 99999999999999 99999888554 689999 5999999 666789999999999999884 6655
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=97.62 E-value=0.00013 Score=55.74 Aligned_cols=80 Identities=18% Similarity=0.238 Sum_probs=50.0
Q ss_pred CccceEEEEecCCCCCCCCCCCCCCCCCCeeEEEEEecCCCCCCCCCCcEeeCCCcc-----cCCCCCCCCeEEeccCCC
Q psy7478 60 KRRTLTFIRIGKPALKPRPTRCVEGEGAPTRTLSVQIPLHRVHEQGVPPVVYPPSIY-----NHQSTLYSGTVCLNVINQ 134 (180)
Q Consensus 60 nl~~W~~~I~Gp~~~~~~p~tpy~ggg~~~f~~~I~fp~~YP~~~~pP~V~F~t~If-----HPnV~~~~G~vCl~~l~e 134 (180)
.++...|+|-.. |.|. .-...+.|.||.+||. .||.+....... +.+|| .+|.|.+..| +
T Consensus 31 ~LL~L~Gtipi~----------y~g~-~y~iPi~Iwlp~~yP~--~pP~v~v~pt~~m~I~~~~~Vd-~~G~v~~pyL-~ 95 (121)
T PF05743_consen 31 LLLCLYGTIPIT----------YKGS-TYNIPICIWLPENYPY--SPPIVYVRPTPSMVIKPSHHVD-SNGRVYLPYL-Q 95 (121)
T ss_dssp EEEEEEEEEEEC----------CTTC-CEEEEEEEEE-TTTTT--SSSEEEE-GCCTECCGGCCCB--TTSBB-SHHH-H
T ss_pred eEEEEecCcccc----------cCCc-ccceeEEEEEcccCCC--CCCEEEEeCCCCCCcCCCCeEC-CCCCEeCchh-c
Confidence 445556666543 3333 1234667789999999 999987764322 44999 6999999888 5
Q ss_pred CCCC-CCChHHHHHHHHHHHhc
Q psy7478 135 EWTP-LYDLSNIFETFLPQLLT 155 (180)
Q Consensus 135 ~WsP-~~tl~~iL~~Ii~~ll~ 155 (180)
.|.+ ..+|..++..+. ..|.
T Consensus 96 ~W~~~~s~L~~lv~~l~-~~F~ 116 (121)
T PF05743_consen 96 NWNPPSSNLVDLVQELQ-AVFS 116 (121)
T ss_dssp T--TTTS-HHHHHHHHH-HCCC
T ss_pred cCCCCCCCHHHHHHHHH-HHHh
Confidence 7887 788888888874 5544
No 28
>KOG2391|consensus
Probab=95.84 E-value=0.04 Score=49.08 Aligned_cols=72 Identities=14% Similarity=0.185 Sum_probs=52.3
Q ss_pred CCCCCCCCCeeEEEEEecCCCCCCCCCCcEeeCCC-----cccCCCCCCCCeEEeccCCCCCCC-CCChHHHHHHHHHHH
Q psy7478 80 RCVEGEGAPTRTLSVQIPLHRVHEQGVPPVVYPPS-----IYNHQSTLYSGTVCLNVINQEWTP-LYDLSNIFETFLPQL 153 (180)
Q Consensus 80 tpy~ggg~~~f~~~I~fp~~YP~~~~pP~V~F~t~-----IfHPnV~~~~G~vCl~~l~e~WsP-~~tl~~iL~~Ii~~l 153 (180)
.+|.|. .-...+.|.+.+.||+ .||.+....- -.|-+|| .+|.|.|+.|. .|.+ +++|..++.-|+ +.
T Consensus 61 ~~~~G~-tYnIPV~iWlldtyP~--~pP~c~VnPT~~M~ik~~~hVd-~nG~V~LPYLh-~W~~pssdLv~Liq~l~-a~ 134 (365)
T KOG2391|consen 61 VPYQGV-TYNIPVIIWLLDTYPY--YPPICYVNPTSTMIIKVHEHVD-PNGKVYLPYLH-NWDPPSSDLVGLIQELI-AA 134 (365)
T ss_pred ccccCC-cccceEEEEecccCCC--CCCeEEecCCchhhhHHhhccC-CCCeEechhhc-cCCCccchHHHHHHHHH-HH
Confidence 345553 2234567778999999 9998866532 1289999 79999999994 7875 578888888886 66
Q ss_pred hcCC
Q psy7478 154 LTYP 157 (180)
Q Consensus 154 l~~P 157 (180)
|.++
T Consensus 135 f~~~ 138 (365)
T KOG2391|consen 135 FSED 138 (365)
T ss_pred hcCC
Confidence 6644
No 29
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=93.11 E-value=0.4 Score=38.50 Aligned_cols=62 Identities=15% Similarity=0.291 Sum_probs=46.7
Q ss_pred eEEEEEecCCCCCCCCCCcEeeCCCcc---cCCCCCCC-----CeEEeccCC-CCCCCCCChHHHHHHHHHHHhc
Q psy7478 90 RTLSVQIPLHRVHEQGVPPVVYPPSIY---NHQSTLYS-----GTVCLNVIN-QEWTPLYDLSNIFETFLPQLLT 155 (180)
Q Consensus 90 f~~~I~fp~~YP~~~~pP~V~F~t~If---HPnV~~~~-----G~vCl~~l~-e~WsP~~tl~~iL~~Ii~~ll~ 155 (180)
=.+.|.|+..||. .+|.|.+.-.-| +|+++ .. ..+|+.... ..|.+..++..+|..|. .-|.
T Consensus 55 E~~~i~~~~~~~~--~~P~v~~lR~dFP~~lpH~~-~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~-~Wl~ 125 (162)
T PF14457_consen 55 ERVAIVFPPDSPL--SAPEVPALRKDFPGNLPHQN-PGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLF-DWLR 125 (162)
T ss_pred ceEEEEecCCCCC--CCccchhhHhhCCCCCCccC-CCCCCCCccceEecCCHHHhhhccCHHHHHHHHH-HHHH
Confidence 3467899999999 999776664433 57777 34 679986554 67999999999999884 5554
No 30
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=92.38 E-value=0.092 Score=41.59 Aligned_cols=55 Identities=18% Similarity=0.372 Sum_probs=25.1
Q ss_pred eeEEEEEecCCCCCCCCCCcEeeCCC-cccCCCCCCCCeEEeccCC-CCC---CCCCChHHHH
Q psy7478 89 TRTLSVQIPLHRVHEQGVPPVVYPPS-IYNHQSTLYSGTVCLNVIN-QEW---TPLYDLSNIF 146 (180)
Q Consensus 89 ~f~~~I~fp~~YP~~~~pP~V~F~t~-IfHPnV~~~~G~vCl~~l~-e~W---sP~~tl~~iL 146 (180)
-|.|.+.+|..||. .||.|....- =-..-.+ -.|+|||+..+ .-| .|.+.|...|
T Consensus 76 EF~~eFdIP~tYP~--t~pEi~lPeLdGKTaKMY-RGGkIClt~HFkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 76 EFDLEFDIPVTYPT--TAPEIALPELDGKTAKMY-RGGKICLTDHFKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp EEEEEEE--TTTTT--S----B-GGGTTT-SSBC-CCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred EEeeecCCCccCCC--CCcceeccccCCchhhhh-cCceEeeecccchhhhhcCCchhHHHHH
Confidence 35556667999999 9999876420 0011223 38999998775 567 4667766654
No 31
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=89.17 E-value=2.4 Score=32.66 Aligned_cols=65 Identities=18% Similarity=0.211 Sum_probs=41.2
Q ss_pred CCCCCCCCCCCCeeEEEEEecCCCCCCCCCCcEeeCCCcccCCCCCCC-CeE--EeccC--------------CCCCCCC
Q psy7478 77 RPTRCVEGEGAPTRTLSVQIPLHRVHEQGVPPVVYPPSIYNHQSTLYS-GTV--CLNVI--------------NQEWTPL 139 (180)
Q Consensus 77 ~p~tpy~ggg~~~f~~~I~fp~~YP~~~~pP~V~F~t~IfHPnV~~~~-G~v--Cl~~l--------------~e~WsP~ 139 (180)
.|...|... .-.+-|.+|..||. .+|.+.+..+-.. ..+ |.| |-... +..|+|.
T Consensus 34 LP~G~y~~~---~~dili~iP~gYP~--~~~DmfY~~P~L~----~~~G~~iP~~~~~~~~~~G~~wQrWSRH~~~W~P~ 104 (122)
T PF14462_consen 34 LPEGKYNHN---EVDILILIPPGYPD--APLDMFYVYPPLK----LADGGPIPNAAEVTQTFDGRTWQRWSRHNNPWRPG 104 (122)
T ss_pred CCCCccCcc---ceEEEEECCCCCCC--CCCCcEEECCceE----ccCCCcCCchhcchhhcCCeeeeeecCCCCCCCCC
Confidence 555557776 88999999999999 8887766554322 122 223 32211 2346775
Q ss_pred -CChHHHHHHHH
Q psy7478 140 -YDLSNIFETFL 150 (180)
Q Consensus 140 -~tl~~iL~~Ii 150 (180)
-+|.+.|..|.
T Consensus 105 ~D~l~T~l~~v~ 116 (122)
T PF14462_consen 105 VDDLWTHLARVE 116 (122)
T ss_pred CCcHHHHHHHHH
Confidence 46888888774
No 32
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=87.25 E-value=0.46 Score=34.10 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=18.2
Q ss_pred eeEEEEEecCCCCCCCCCCcEeeCCC
Q psy7478 89 TRTLSVQIPLHRVHEQGVPPVVYPPS 114 (180)
Q Consensus 89 ~f~~~I~fp~~YP~~~~pP~V~F~t~ 114 (180)
.+.+.|.||++||. .+|.|.+.+.
T Consensus 50 ~~~l~~~~p~~YP~--~~P~i~l~~~ 73 (113)
T PF05773_consen 50 SVTLHFTLPPGYPE--SPPKISLESP 73 (113)
T ss_dssp EEEEEEEE-SSTTS--S--EEEEEEE
T ss_pred eEEEEEeCCCcCCC--cCCEEEEEcC
Confidence 89999999999998 9999986654
No 33
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=85.89 E-value=0.88 Score=32.40 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=20.7
Q ss_pred eeEEEEEecCCCCCCCCCCcEeeCCC
Q psy7478 89 TRTLSVQIPLHRVHEQGVPPVVYPPS 114 (180)
Q Consensus 89 ~f~~~I~fp~~YP~~~~pP~V~F~t~ 114 (180)
.+.+.|.||.+||. .+|.|.+.+.
T Consensus 42 ~~~l~~~~p~~YP~--~~P~i~~~~~ 65 (107)
T smart00591 42 SLTLQVKLPENYPD--EAPPISLLNS 65 (107)
T ss_pred EEEEEEECCCCCCC--CCCCeEEECC
Confidence 68899999999999 9999987653
No 34
>KOG3357|consensus
Probab=66.12 E-value=8.6 Score=30.21 Aligned_cols=47 Identities=17% Similarity=0.316 Sum_probs=28.1
Q ss_pred eEEEEEecCCCCCCCCCCcEeeCCCc-ccCCCCCCCCeEEeccC-CCCCCCC
Q psy7478 90 RTLSVQIPLHRVHEQGVPPVVYPPSI-YNHQSTLYSGTVCLNVI-NQEWTPL 139 (180)
Q Consensus 90 f~~~I~fp~~YP~~~~pP~V~F~t~I-fHPnV~~~~G~vCl~~l-~e~WsP~ 139 (180)
|-+.+.+|..||- .+|.|...--- -.--.+ ..|.|||... ..-|...
T Consensus 80 fdvefdipityp~--tapeialpeldgktakmy-rggkiclt~hfkplwarn 128 (167)
T KOG3357|consen 80 FDVEFDIPITYPT--TAPEIALPELDGKTAKMY-RGGKICLTDHFKPLWARN 128 (167)
T ss_pred eeeeeccccccCC--CCccccccccCchhhhhh-cCceEeeccccchhhhhc
Confidence 4455566999999 89988643100 001112 3799999544 4678543
No 35
>KOG1144|consensus
Probab=63.81 E-value=6.9 Score=38.98 Aligned_cols=27 Identities=48% Similarity=0.639 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCcc
Q psy7478 36 EEKKKEEKKKEKKKKEEEKKKEGEKRR 62 (180)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~keg~nl~ 62 (180)
+++.++++|.+.|.|++++|.+|-=++
T Consensus 258 ~eEak~kkKekekek~er~KaeGklLT 284 (1064)
T KOG1144|consen 258 EEEAKEKKKEKEKEKKERKKAEGKLLT 284 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccch
Confidence 344455566666666777777776543
No 36
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=59.94 E-value=16 Score=29.25 Aligned_cols=42 Identities=17% Similarity=0.324 Sum_probs=25.7
Q ss_pred CCCccc---CCCCCCCCeEEeccCCCCCCCCCChHHHHHHHHHHHhcCC
Q psy7478 112 PPSIYN---HQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYP 157 (180)
Q Consensus 112 ~t~IfH---PnV~~~~G~vCl~~l~e~WsP~~tl~~iL~~Ii~~ll~~P 157 (180)
.|++|| +||. .+|.||+.... .|.......+..+...+|..+
T Consensus 89 ~T~Ly~aPf~NV~-~~g~vC~G~~~---~P~~~~~~~i~~we~~Ff~S~ 133 (175)
T PF14460_consen 89 DTPLYHAPFFNVY-SNGSVCWGNNS---LPKISTLASIEAWEDAFFNSP 133 (175)
T ss_pred CCeeEeCCccccC-CCCcEeeCCCc---CCCccCHHHHHHHHHHHhCCC
Confidence 456666 6998 69999997643 344444445555544555554
No 37
>KOG0309|consensus
Probab=57.58 E-value=19 Score=35.89 Aligned_cols=25 Identities=12% Similarity=0.258 Sum_probs=21.4
Q ss_pred eeEEEEEecCCCCCCCCCCcEeeCCC
Q psy7478 89 TRTLSVQIPLHRVHEQGVPPVVYPPS 114 (180)
Q Consensus 89 ~f~~~I~fp~~YP~~~~pP~V~F~t~ 114 (180)
..++.|.||.+||. +.+|.++|..+
T Consensus 467 flrm~V~FP~nYPn-~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 467 FLRMLVKFPANYPN-NAAPSFQFENP 491 (1081)
T ss_pred eEEEEEeccccCCC-CCCCceEEecC
Confidence 56888999999999 58999999754
No 38
>PF14455 Metal_CEHH: Predicted metal binding domain
Probab=45.54 E-value=1.4e+02 Score=24.20 Aligned_cols=20 Identities=20% Similarity=0.240 Sum_probs=14.7
Q ss_pred EEEEecCCCCCCCCCCcEeeCCC
Q psy7478 92 LSVQIPLHRVHEQGVPPVVYPPS 114 (180)
Q Consensus 92 ~~I~fp~~YP~~~~pP~V~F~t~ 114 (180)
++|.| .||-. .||+|.|+.+
T Consensus 57 lr~d~-~n~Dl--~PPSV~fvDp 76 (177)
T PF14455_consen 57 LRFDF-TNWDL--RPPSVVFVDP 76 (177)
T ss_pred EEEec-cccCc--CCCceEEecc
Confidence 34444 47888 9999999865
No 39
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=43.31 E-value=22 Score=31.80 Aligned_cols=26 Identities=15% Similarity=0.432 Sum_probs=21.5
Q ss_pred eeEEEEEecCCCCCCCCCCcEeeCCCccc
Q psy7478 89 TRTLSVQIPLHRVHEQGVPPVVYPPSIYN 117 (180)
Q Consensus 89 ~f~~~I~fp~~YP~~~~pP~V~F~t~IfH 117 (180)
.|-++|.+|..||. ..|.++|.+ +||
T Consensus 307 ~flvHi~Lp~~FP~--~qP~ltlqS-~yH 332 (333)
T PF06113_consen 307 TFLVHISLPIQFPK--DQPSLTLQS-VYH 332 (333)
T ss_pred EEEEEEeccCCCCC--cCCeEEEEe-ecc
Confidence 56677888999999 999999876 455
No 40
>PF06375 BLVR: Bovine leukaemia virus receptor (BLVR); InterPro: IPR010474 Bovine leukemia virus (BLV) is one of the most common infectious cattle viruses, with between 30 and 40% of cows in the United States being infected. It is closely related to the human T-cell leukaemia virus type 1 (HTLV-1) and has highly conserved envelope glycoprotein functional domains []. BLV is an oncogenic C-type retrovirus, which results in the animals developing a malignant lymphoma. BLV, like the human and simian T cell leukaemia viruses, is a deltaretrovirus. 182 residues at the amino-terminal of the BLV envelope glycoprotein surface unit encompass the receptor-binding domain. The metabolic activity in B cells, T cells, and thymocytes is indicated by the expression of the BLV-binding receptor []. A candidate gene of the receptor (BLVR) is related, but unique, to a gene family of the delta subunit of the adaptor protein (AP) complex 3, AP-3 []. The AP-3 complex is not clathrin-associated but is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to lysosomes. ; PDB: 4AFI_B.
Probab=39.55 E-value=9.8 Score=30.43 Aligned_cols=10 Identities=0% Similarity=-0.031 Sum_probs=0.0
Q ss_pred CccceEEEEe
Q psy7478 60 KRRTLTFIRI 69 (180)
Q Consensus 60 nl~~W~~~I~ 69 (180)
++.-.+.+.+
T Consensus 112 d~~~~~~V~~ 121 (154)
T PF06375_consen 112 DIPPVHQVNT 121 (154)
T ss_dssp ----------
T ss_pred ccccceeeec
Confidence 4444444433
No 41
>KOG0662|consensus
Probab=39.01 E-value=25 Score=29.74 Aligned_cols=55 Identities=18% Similarity=0.370 Sum_probs=41.4
Q ss_pred CCCcEeeCCCcccCCCC-CCCCeEEeccCCCCCC--CCCChHHHHHHHHHHHhcCCCCC
Q psy7478 105 GVPPVVYPPSIYNHQST-LYSGTVCLNVINQEWT--PLYDLSNIFETFLPQLLTYPNPT 160 (180)
Q Consensus 105 ~pP~V~F~t~IfHPnV~-~~~G~vCl~~l~e~Ws--P~~tl~~iL~~Ii~~ll~~P~~~ 160 (180)
.||.|.|-.+.|.-.|| ++-|.|-..+.+.+|. |..++.+.|..|+ .++..|+-+
T Consensus 168 rppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif-~~lg~p~ed 225 (292)
T KOG0662|consen 168 RPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIF-RLLGTPTED 225 (292)
T ss_pred cCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHH-HHhCCCccc
Confidence 79999999999999888 3345454455566764 7789999999996 777777543
No 42
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=38.75 E-value=36 Score=26.39 Aligned_cols=23 Identities=9% Similarity=0.008 Sum_probs=21.3
Q ss_pred CeeEEEEEecCCCC-CCCCCCcEeeC
Q psy7478 88 PTRTLSVQIPLHRV-HEQGVPPVVYP 112 (180)
Q Consensus 88 ~~f~~~I~fp~~YP-~~~~pP~V~F~ 112 (180)
|.|.|.-.+|-.|| . .||.|+|.
T Consensus 66 G~y~f~ti~Pg~Y~~~--R~~HiH~~ 89 (146)
T cd00421 66 GRYRFRTIKPGPYPIG--RPPHIHFK 89 (146)
T ss_pred cCEEEEEEcCCCCCCC--CCCEEEEE
Confidence 59999999999999 8 99999886
No 43
>KOG0338|consensus
Probab=38.50 E-value=10 Score=36.28 Aligned_cols=22 Identities=27% Similarity=0.318 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHhhhcCCCcc
Q psy7478 41 EEKKKEKKKKEEEKKKEGEKRR 62 (180)
Q Consensus 41 ~~~~~~~~~~~~~~~keg~nl~ 62 (180)
+..+++++..++++..++.+.+
T Consensus 145 e~~~~~d~~~e~k~e~e~~~~F 166 (691)
T KOG0338|consen 145 ESLKEKDEAGEEKEEDEAKKFF 166 (691)
T ss_pred hhhcccccccccchhhhccccc
Confidence 3444444444455445555544
No 44
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=37.42 E-value=36 Score=27.82 Aligned_cols=25 Identities=8% Similarity=0.009 Sum_probs=22.3
Q ss_pred CCeeEEEEEecCCCCCCCCCCcEeeCC
Q psy7478 87 APTRTLSVQIPLHRVHEQGVPPVVYPP 113 (180)
Q Consensus 87 ~~~f~~~I~fp~~YP~~~~pP~V~F~t 113 (180)
.|.|.|.-.+|--||. .+|.|+|..
T Consensus 86 ~G~~~F~TI~PG~Y~g--R~~HIH~~V 110 (188)
T cd03457 86 DGVVTFTTIFPGWYPG--RATHIHFKV 110 (188)
T ss_pred CccEEEEEECCCCCCC--CCceEEEEE
Confidence 3699999999999999 999999864
No 45
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=34.31 E-value=44 Score=22.28 Aligned_cols=24 Identities=25% Similarity=0.520 Sum_probs=14.5
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCC
Q psy7478 135 EWTPLYDLSNIFETFLPQLLTYPN 158 (180)
Q Consensus 135 ~WsP~~tl~~iL~~Ii~~ll~~P~ 158 (180)
+|.|.++|.++|....+-...+|+
T Consensus 37 gW~p~~~L~~~i~~~w~W~~~np~ 60 (62)
T PF13950_consen 37 GWKPKYSLEDMIRDAWNWQKKNPN 60 (62)
T ss_dssp ----SSSHHHHHHHHHHHHHHSTT
T ss_pred CCCcCCCHHHHHHHHHHHHHHCcC
Confidence 799999999999887644444443
No 46
>KOG1047|consensus
Probab=33.98 E-value=30 Score=33.27 Aligned_cols=26 Identities=12% Similarity=0.128 Sum_probs=20.5
Q ss_pred eeEEEEEecCCCCCCC-CCCcEeeCCCc
Q psy7478 89 TRTLSVQIPLHRVHEQ-GVPPVVYPPSI 115 (180)
Q Consensus 89 ~f~~~I~fp~~YP~~~-~pP~V~F~t~I 115 (180)
.|-+ |.+|++||+.+ .-|.++|+|+.
T Consensus 254 ryDl-lvlPpSFP~gGMENPcltF~TpT 280 (613)
T KOG1047|consen 254 RYDL-LVLPPSFPFGGMENPCLTFVTPT 280 (613)
T ss_pred cceE-EEecCCCCcccccCcceeeecch
Confidence 4443 45799999977 88999999983
No 47
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=32.88 E-value=23 Score=25.38 Aligned_cols=21 Identities=33% Similarity=0.605 Sum_probs=16.7
Q ss_pred HHHHhhhhhhhhhcCCCCcch
Q psy7478 12 YKRRKKKKEEEDEEGGGGEEE 32 (180)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~ 32 (180)
..|=+++.|.|+.|.+||+|+
T Consensus 43 i~RIreraEDSGnES~Gd~Ee 63 (81)
T PF00558_consen 43 IERIRERAEDSGNESDGDEEE 63 (81)
T ss_dssp HHHHHCTTTCCHCTTTTCCHH
T ss_pred HHHHHcccccCCCCCCCcHHH
Confidence 345677889999999998876
No 48
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=31.77 E-value=52 Score=26.12 Aligned_cols=25 Identities=8% Similarity=-0.052 Sum_probs=21.8
Q ss_pred CCeeEEEEEecCCCC-----CCCCCCcEeeCC
Q psy7478 87 APTRTLSVQIPLHRV-----HEQGVPPVVYPP 113 (180)
Q Consensus 87 ~~~f~~~I~fp~~YP-----~~~~pP~V~F~t 113 (180)
.|.|.|.-.+|--|| . .||.|.|..
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~--R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAW--RAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCC--cCCEEEEEE
Confidence 469999999999999 7 999998863
No 49
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=31.40 E-value=87 Score=26.58 Aligned_cols=20 Identities=15% Similarity=0.404 Sum_probs=14.5
Q ss_pred CCccc---CCCCCCCCeEEeccCC
Q psy7478 113 PSIYN---HQSTLYSGTVCLNVIN 133 (180)
Q Consensus 113 t~IfH---PnV~~~~G~vCl~~l~ 133 (180)
|+.|| +||. .+|.||+....
T Consensus 131 T~L~~aPffNV~-~~G~VC~G~~~ 153 (228)
T TIGR03737 131 TKLYQAPLFNVW-SNGEICAGNAR 153 (228)
T ss_pred CeeccCCcCccC-CCCeEeeCCCc
Confidence 44565 5888 69999996653
No 50
>KOG4018|consensus
Probab=30.96 E-value=45 Score=28.10 Aligned_cols=19 Identities=11% Similarity=0.121 Sum_probs=17.9
Q ss_pred eeEEEEEecCCCCCCCCCCcE
Q psy7478 89 TRTLSVQIPLHRVHEQGVPPV 109 (180)
Q Consensus 89 ~f~~~I~fp~~YP~~~~pP~V 109 (180)
.+.|.|.++.+||. .+|-|
T Consensus 50 ~~~l~~s~tEnYPD--e~Pli 68 (215)
T KOG4018|consen 50 SFILVFSLTENYPD--EAPLI 68 (215)
T ss_pred cEEEEEEccCCCCC--CCcce
Confidence 78899999999999 99999
No 51
>KOG0177|consensus
Probab=29.65 E-value=1e+02 Score=25.66 Aligned_cols=26 Identities=12% Similarity=0.488 Sum_probs=21.9
Q ss_pred CCeEEeccCCCCCCCCCChHHHHHHH
Q psy7478 124 SGTVCLNVINQEWTPLYDLSNIFETF 149 (180)
Q Consensus 124 ~G~vCl~~l~e~WsP~~tl~~iL~~I 149 (180)
.+..|++++...|+|.+|+...+.-+
T Consensus 135 ~~~f~~sIlDr~Y~pdmt~eea~~lm 160 (200)
T KOG0177|consen 135 GSYFCLSILDRYYKPDMTIEEALDLM 160 (200)
T ss_pred hhhhhHHHHHhhhCCCCCHHHHHHHH
Confidence 56799999999999999988776544
No 52
>KOG3203|consensus
Probab=27.20 E-value=38 Score=27.29 Aligned_cols=15 Identities=20% Similarity=0.443 Sum_probs=11.7
Q ss_pred CCcccCCCCCCCCeEEe
Q psy7478 113 PSIYNHQSTLYSGTVCL 129 (180)
Q Consensus 113 t~IfHPnV~~~~G~vCl 129 (180)
-++|||+.| -|.+|+
T Consensus 49 KPiYhP~~D--cGD~VV 63 (165)
T KOG3203|consen 49 KPIYHPSTD--CGDHVV 63 (165)
T ss_pred CCccCCccC--CCCEEE
Confidence 368999999 677665
No 53
>KOG2270|consensus
Probab=25.70 E-value=35 Score=31.87 Aligned_cols=9 Identities=56% Similarity=0.682 Sum_probs=3.5
Q ss_pred HHHHHHHHh
Q psy7478 46 EKKKKEEEK 54 (180)
Q Consensus 46 ~~~~~~~~~ 54 (180)
.+|++.+..
T Consensus 487 ~RKk~vKe~ 495 (520)
T KOG2270|consen 487 ERKKKVKEA 495 (520)
T ss_pred HHHHHHHHH
Confidence 334433333
No 54
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=22.73 E-value=37 Score=29.66 Aligned_cols=45 Identities=18% Similarity=0.397 Sum_probs=30.4
Q ss_pred eeEEEEEecCCCCCCCCCCcEeeCCCcccCCCCCCCCeEEeccCCCCCCC-CCChHHHHHHHH
Q psy7478 89 TRTLSVQIPLHRVHEQGVPPVVYPPSIYNHQSTLYSGTVCLNVINQEWTP-LYDLSNIFETFL 150 (180)
Q Consensus 89 ~f~~~I~fp~~YP~~~~pP~V~F~t~IfHPnV~~~~G~vCl~~l~e~WsP-~~tl~~iL~~Ii 150 (180)
...++|.+|.+||. .+|.+...-++ .+...|.+ ..+|.+++..+.
T Consensus 138 ~H~l~l~l~~~yp~--~~p~~~~~~P~---------------~~~~~w~~~~ssL~~v~~qF~ 183 (291)
T PF09765_consen 138 QHYLELKLPSNYPF--EPPSCSLDLPI---------------PFSLSWSPSQSSLKDVVQQFQ 183 (291)
T ss_dssp EEEEEEETTTTTTT--SEEEECS-TTS----------------HHHHHHCHT-SHHHHHHHHH
T ss_pred eEEEEEEECCCCCC--CCceeeCCCCc---------------chhhhhcccccCHHHHHHHHH
Confidence 67788999999999 99975422221 11235888 778888887774
No 55
>KOG2775|consensus
Probab=22.59 E-value=37 Score=30.46 Aligned_cols=13 Identities=31% Similarity=0.393 Sum_probs=9.9
Q ss_pred CCCCChHHHHHHH
Q psy7478 137 TPLYDLSNIFETF 149 (180)
Q Consensus 137 sP~~tl~~iL~~I 149 (180)
.|.+++.+|+..|
T Consensus 107 kPGmtm~ei~e~i 119 (397)
T KOG2775|consen 107 KPGMTMIEICETI 119 (397)
T ss_pred cCcccHHHHHHHH
Confidence 6788888887765
No 56
>KOG2422|consensus
Probab=22.31 E-value=43 Score=32.44 Aligned_cols=34 Identities=44% Similarity=0.630 Sum_probs=0.0
Q ss_pred cCCCCcchhHHHHHHHHHH-------------------HHHHHHHHHHhhhcC
Q psy7478 25 EGGGGEEEEEEEEKKKEEK-------------------KKEKKKKEEEKKKEG 58 (180)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~keg 58 (180)
+.||....++.++.-...+ |.++|||+++|+|++
T Consensus 51 ~kd~~~~nee~e~~~~~ee~de~~~~~es~~~~~~~~sk~k~KKK~krkkKk~ 103 (665)
T KOG2422|consen 51 RKDGGQMNEEDEEAAIAEERDEPSVGQESRITLASKSSKNKKKKKKKRKKKKS 103 (665)
T ss_pred cccccccchhhHHhhhhhcccCcccCCcccccccchhhccccchhhhhccccc
No 57
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=21.25 E-value=32 Score=24.70 Aligned_cols=6 Identities=0% Similarity=0.113 Sum_probs=0.4
Q ss_pred ceEEEE
Q psy7478 63 TLTFIR 68 (180)
Q Consensus 63 ~W~~~I 68 (180)
.|...|
T Consensus 66 rwlwLl 71 (81)
T PF14812_consen 66 RWLWLL 71 (81)
T ss_dssp -----T
T ss_pred hhHHHH
Confidence 454443
No 58
>PF02115 Rho_GDI: RHO protein GDP dissociation inhibitor; InterPro: IPR000406 The GDP dissociation inhibitor for rho proteins, rho GDI, regulates GDP/GTP exchange by inhibiting the dissociation of GDP from them. The protein contains 204 amino acids, with a calculated Mr value of 23,421. Hydropathy analysis shows it to be largely hydrophilic, with a single hydrophobic region. Results of database searches suggest rho GDI is a novel protein, currently with no known homologue. The protein plays an important role in the activation of the superoxide (O2-)-generating NADPH oxidase of phagocytes. This process requires the interaction of membrane-associated cytochrome b559 with 3 cytosolic components: p47-phox, p67-phox and a heterodimer of the small G-protein p21rac1 and rho GDI []. The association of p21rac and GDI inhibits dissociation of GDP from p21rac, thereby maintaining it in an inactive form. The proteins are attached via a lipid tail on p21rac that binds to the hydrophobic region of GDI []. Dissociation of these proteins might be mediated by the release of lipids (e.g., arachidonate and phosphatidate) from membranes through the action of phospholipases []. The lipids may then compete with the lipid tail on p21rac for the hydrophobic pocket on GDI.; GO: 0005094 Rho GDP-dissociation inhibitor activity, 0005737 cytoplasm; PDB: 2JHV_A 2JHU_A 2JI0_A 2JHS_A 1RHO_A 2JHW_A 1FT3_A 2JHZ_B 1QVY_C 1FST_B ....
Probab=20.78 E-value=16 Score=30.33 Aligned_cols=46 Identities=20% Similarity=0.187 Sum_probs=25.7
Q ss_pred HHHHHhhhcCCCccceEEEEecCCCCCCCCCCCCCCCCCCeeEEEEEecC
Q psy7478 49 KKEEEKKKEGEKRRTLTFIRIGKPALKPRPTRCVEGEGAPTRTLSVQIPL 98 (180)
Q Consensus 49 ~~~~~~~keg~nl~~W~~~I~Gp~~~~~~p~tpy~ggg~~~f~~~I~fp~ 98 (180)
+.=...+++.+.|..|...+.|.....+.|+.| .=- +..|.|.++.
T Consensus 36 ~e~~~lD~eDESL~k~Ke~LLG~~~~~~d~~~p-~V~---v~~l~l~~eg 81 (200)
T PF02115_consen 36 KEIQELDKEDESLRKWKESLLGSADVIGDPNDP-KVI---VKSLTLVVEG 81 (200)
T ss_dssp HHHHHTTTT-HHHHHHHHHHH-SS--SS-STS--SEE---EEEEEEEETT
T ss_pred HHHHhcCcCcHHHHHHHHhhcCCCcccCCCCCC-eEE---EEEEEEEcCC
Confidence 344566788889999999988887433444444 222 4456666654
Done!