RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7478
(180 letters)
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL
structural genomics consortium, SGC, ligase; HET: PG4;
2.38A {Plasmodium falciparum}
Length = 152
Score = 85.4 bits (212), Expect = 7e-22
Identities = 38/57 (66%), Positives = 47/57 (82%)
Query: 124 SGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGDAAAMYLDKPDKYKE 180
SG+VCL+VINQ WTPLY L N+FE FLPQLLTYPNP+DPLN DAA++ + + Y+E
Sbjct: 80 SGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEE 136
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural
genomics, structural genomics consortium; 2.10A {Homo
sapiens}
Length = 179
Score = 85.1 bits (211), Expect = 2e-21
Identities = 45/57 (78%), Positives = 52/57 (91%)
Query: 124 SGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGDAAAMYLDKPDKYKE 180
SGTVCL+VINQ WT LYDL+NIFE+FLPQLL YPNP DPLNGDAAAMYL +P++YK+
Sbjct: 102 SGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQ 158
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI,
protein structure initiative ubiquitin conjugating
enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Length = 171
Score = 85.1 bits (211), Expect = 2e-21
Identities = 33/57 (57%), Positives = 40/57 (70%)
Query: 124 SGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGDAAAMYLDKPDKYKE 180
SG+VCL+VINQ WTP+Y L NIF+ FLPQLL YPNP+DPLN AA + +
Sbjct: 89 SGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDA 145
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics,
PSI, protein structure initiative; 2.63A {Trypanosoma
cruzi}
Length = 167
Score = 65.2 bits (159), Expect = 6e-14
Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 14/82 (17%)
Query: 107 PPVV------YPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQL--LTYPN 158
PP V Y P + G +C ++N WTP S++ + L ++
Sbjct: 85 PPTVRFVTPVYSPLVTG------EGGICDRMVNDFWTPDQHASDVIKLVLDRVFSQYKSR 138
Query: 159 PTDPLNGDAAAMYLDKPDKYKE 180
D +N +A P +
Sbjct: 139 RDDDVNPEARHYLEKFPQDFAA 160
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating
enzyme, protein degradatio structural proteomics in
europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB:
2bf8_A
Length = 159
Score = 64.6 bits (158), Expect = 8e-14
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 12/80 (15%)
Query: 107 PPVV------YPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPT 160
PP V + P+I + +G +CL+++ +W L + + L LL P
Sbjct: 74 PPKVRFITKIWHPNISS-----VTGAICLDILKDQWAAAMTLRTVLLS-LQALLAAAEPD 127
Query: 161 DPLNGDAAAMYLDKPDKYKE 180
DP + A Y P+ +K+
Sbjct: 128 DPQDAVVANQYKQNPEMFKQ 147
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2
M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Length = 160
Score = 64.2 bits (157), Expect = 1e-13
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 13/80 (16%)
Query: 107 PPVV------YPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPT 160
PP V Y P+I G VCLN++ ++W P+ +++I L L PNP
Sbjct: 67 PPKVKCETMVYHPNIDL------EGNVCLNILREDWKPVLTINSII-YGLQYLFLEPNPE 119
Query: 161 DPLNGDAAAMYLDKPDKYKE 180
DPLN +AA + + +++
Sbjct: 120 DPLNKEAAEVLQNNRRLFEQ 139
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure,
ATP-binding, isopeptide BO ligase, nucleotide-binding,
UBL conjugation pathway; 1.80A {Homo sapiens} PDB:
3k9p_A 1yla_A 2o25_A
Length = 201
Score = 64.0 bits (156), Expect = 3e-13
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 12/80 (15%)
Query: 107 PPVV------YPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPT 160
PP V + P+I + +G +CL+++ +W L + + L LL P
Sbjct: 71 PPKVRFITKIWHPNISS-----VTGAICLDILKDQWAAAMTLRTVLLS-LQALLAAAEPD 124
Query: 161 DPLNGDAAAMYLDKPDKYKE 180
DP + A Y P+ +K+
Sbjct: 125 DPQDAVVANQYKQNPEMFKQ 144
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase;
2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A
2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Length = 152
Score = 62.7 bits (153), Expect = 4e-13
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 13/80 (16%)
Query: 107 PPVV------YPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPT 160
PP V + P+IY G++CL+++ +W+P+YD++ I + LL PNP
Sbjct: 67 PPTVRFVSRMFHPNIYA------DGSICLDILQNQWSPIYDVAAILTSIQ-SLLCDPNPN 119
Query: 161 DPLNGDAAAMYLDKPDKYKE 180
P N +AA MY + +Y
Sbjct: 120 SPANSEAARMYSESKREYNR 139
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular
complex, ubiquitin, ATP, conformational change,
thioester, switch, adenylation, protein turnover,
ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Length = 180
Score = 63.2 bits (154), Expect = 4e-13
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
P V +Y H + G V LN++ ++W P+ +++I L L PNP DPLN +
Sbjct: 88 PKVKCETMVY-HPNIDLEGNVALNILREDWKPVLTINSII-YGLQYLFLEPNPEDPLNKE 145
Query: 167 AAAMYLDKPDKYKE 180
AA + + +++
Sbjct: 146 AAEVLQNNRRLFEQ 159
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium,
ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo
sapiens} SCOP: d.20.1.1
Length = 158
Score = 62.3 bits (152), Expect = 5e-13
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 13/80 (16%)
Query: 107 PPVV------YPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPT 160
PP + P++ + G +C+NV+ ++WT + ++ T LL +PNP
Sbjct: 76 PPKGYFLTKIFHPNVGAN------GEICVNVLKRDWTAELGIRHVLLTIK-CLLIHPNPE 128
Query: 161 DPLNGDAAAMYLDKPDKYKE 180
LN +A + L+ ++Y
Sbjct: 129 SALNEEAGRLLLENYEEYAA 148
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A
{Saccharomyces cerevisiae} PDB: 3tdi_C
Length = 190
Score = 63.2 bits (154), Expect = 5e-13
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
P VV I+ H + G VCLN++ ++W+P DL +I L L PNP DPLN D
Sbjct: 97 PKVVCLKKIF-HPNIDLKGNVCLNILREDWSPALDLQSIITG-LLFLFLEPNPNDPLNKD 154
Query: 167 AAAMYLDKPDKYKE 180
AA + + ++ E
Sbjct: 155 AAKLLCEGEKEFAE 168
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent
degradation, ligase; NMR {Saccharomyces cerevisiae}
SCOP: a.5.2.1 d.20.1.1
Length = 215
Score = 63.3 bits (154), Expect = 7e-13
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 12/80 (15%)
Query: 107 PPVV------YPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPT 160
PP + Y P+I + +G +CL+++ W+P+ L + L LL P P
Sbjct: 66 PPKMQFDTKVYHPNISS-----VTGAICLDILRNAWSPVITLKSAL-ISLQALLQSPEPN 119
Query: 161 DPLNGDAAAMYLDKPDKYKE 180
DP + + A YL + + +
Sbjct: 120 DPQDAEVAQHYLRDRESFNK 139
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting,
ligase, alternative splicing, cytoplasm, UBL
conjugation, UBL conjugation pathway; 1.86A {Homo
sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Length = 253
Score = 63.8 bits (155), Expect = 7e-13
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 12/80 (15%)
Query: 107 PPVV------YPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPT 160
PP V + P+I + +G +CL+++ +W L + + L LL P
Sbjct: 123 PPKVRFITKIWHPNISS-----VTGAICLDILKDQWAAAMTLRTVLLS-LQALLAAAEPD 176
Query: 161 DPLNGDAAAMYLDKPDKYKE 180
DP + A Y P+ +K+
Sbjct: 177 DPQDAVVANQYKQNPEMFKQ 196
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces
cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Length = 149
Score = 61.5 bits (150), Expect = 1e-12
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 12/80 (15%)
Query: 107 PPVV------YPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPT 160
PP + Y P+I + +G +CL+++ W+P+ L + + LL P P
Sbjct: 65 PPKMQFDTKVYHPNISS-----VTGAICLDILKNAWSPVITLKSALISLQ-ALLQSPEPN 118
Query: 161 DPLNGDAAAMYLDKPDKYKE 180
DP + + A YL + + +
Sbjct: 119 DPQDAEVAQHYLRDRESFNK 138
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas
conjugation pathway, structural genomics, structural
genomi consortium; 1.85A {Plasmodium falciparum} PDB:
3e95_A
Length = 149
Score = 61.5 bits (150), Expect = 1e-12
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 13/80 (16%)
Query: 107 PPVV------YPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPT 160
PP V Y P+I G +CL+++ +W+P + + + + LL+ P P
Sbjct: 64 PPKVRFLTKIYHPNIDKL------GRICLDILKDKWSPALQIRTVLLS-IQALLSSPEPD 116
Query: 161 DPLNGDAAAMYLDKPDKYKE 180
DPL+ A + + +
Sbjct: 117 DPLDSKVAEHFKQDKNDAEH 136
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein
complex, E3 ligase, ubiquitiny TPR, heat-shock protein;
2.9A {Homo sapiens} SCOP: d.20.1.1
Length = 154
Score = 61.5 bits (150), Expect = 1e-12
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 13/80 (16%)
Query: 107 PPVV------YPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPT 160
P V Y P++ G +CL+++ +W+P + + + LL+ PNP
Sbjct: 68 APKVRFMTKIYHPNVDKL------GRICLDILKDKWSPALQIRTVLLSIQ-ALLSAPNPD 120
Query: 161 DPLNGDAAAMYLDKPDKYKE 180
DPL D A + + E
Sbjct: 121 DPLANDVAEQWKTNEAQAIE 140
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721,
structural genomics, structural genomics consortium,
SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Length = 193
Score = 62.1 bits (151), Expect = 1e-12
Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 12/80 (15%)
Query: 107 PPVV------YPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPT 160
PP + + P+I + +G +CL+++ EW+P + + +L P PT
Sbjct: 108 PPKMKFVTKIWHPNISSQ-----TGAICLDILKHEWSPALTIRTALLSIQ-AMLADPVPT 161
Query: 161 DPLNGDAAAMYLDKPDKYKE 180
DP + + A M ++ + +
Sbjct: 162 DPQDAEVAKMMIENHPLFVQ 181
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway,
structural genomics, protein structure initiative; 1.10A
{Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A
2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B
3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D
4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Length = 150
Score = 60.3 bits (147), Expect = 3e-12
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 13/80 (16%)
Query: 107 PPVV------YPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPT 160
PP V Y P+I ++ G++CL+++ +W+P +S + + LL PNP
Sbjct: 67 PPKVAFTTRIYHPNINSN------GSICLDILRSQWSPALTISKVLLSIC-SLLCDPNPD 119
Query: 161 DPLNGDAAAMYLDKPDKYKE 180
DPL + A +Y ++Y +
Sbjct: 120 DPLVPEIARIYKTDRERYNQ 139
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC,
ligase; 1.90A {Plasmodium yoelii}
Length = 216
Score = 61.7 bits (150), Expect = 3e-12
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 12/80 (15%)
Query: 107 PPVV------YPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPT 160
PP + + P+I + +G +CL+V+ EW+P + + + LL+ P P
Sbjct: 86 PPKIKFVTKIWHPNISSQ-----TGAICLDVLKNEWSPALTIRTALLS-IQALLSDPQPD 139
Query: 161 DPLNGDAAAMYLDKPDKYKE 180
DP + + A MY + + +
Sbjct: 140 DPQDAEVAKMYKENHALFVK 159
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A
2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Length = 155
Score = 60.4 bits (147), Expect = 3e-12
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 13/80 (16%)
Query: 107 PPVV------YPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPT 160
P V Y P+I G +CL+V+ W+P + + + + LL PNP
Sbjct: 68 APKVRFLTKIYHPNIDRL------GRICLDVLKTNWSPALQIRTVLLS-IQALLASPNPN 120
Query: 161 DPLNGDAAAMYLDKPDKYKE 180
DPL D A ++ K
Sbjct: 121 DPLANDVAEDWIKNEQGAKA 140
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL
conjugation pathway; HET: CME; 1.94A {Homo sapiens}
SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Length = 165
Score = 59.6 bits (145), Expect = 6e-12
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 13/80 (16%)
Query: 107 PPVV------YPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPT 160
PP V Y P+I ++ G++CL+++ +W+P +S + + LL PNP
Sbjct: 82 PPKVAFTTRIYHPNINSN------GSICLDILRSQWSPALTISKVLLSIC-SLLCDPNPD 134
Query: 161 DPLNGDAAAMYLDKPDKYKE 180
DPL + A +Y +KY
Sbjct: 135 DPLVPEIARIYKTDREKYNR 154
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural
genomics consortium, ubiquit ubiquitin-conjugating
enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP:
d.20.1.1
Length = 166
Score = 59.6 bits (145), Expect = 7e-12
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 13/80 (16%)
Query: 107 PPVV------YPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPT 160
PP V Y P+I + G +CL+++ +W+P +S + + LLT PNP
Sbjct: 84 PPKVNFTTKIYHPNINSQ------GAICLDILKDQWSPALTISKVL-LSISSLLTDPNPD 136
Query: 161 DPLNGDAAAMYLDKPDKYKE 180
DPL + A +Y +Y +
Sbjct: 137 DPLVPEIAHLYKSDRMRYDQ 156
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation;
2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Length = 169
Score = 59.7 bits (145), Expect = 8e-12
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 13/80 (16%)
Query: 107 PPVV------YPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPT 160
PP V + P++Y +G +CL+++ WTP YD+++I T + L PNP
Sbjct: 67 PPHVKFLSEMFHPNVYA------NGEICLDILQNRWTPTYDVASIL-TSIQSLFNDPNPA 119
Query: 161 DPLNGDAAAMYLDKPDKYKE 180
P N +AA ++ D +Y +
Sbjct: 120 SPANVEAATLFKDHKSQYVK 139
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium,
ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation
pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Length = 194
Score = 59.0 bits (143), Expect = 2e-11
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 13/80 (16%)
Query: 107 PPVV------YPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPT 160
PP V Y +I + G +CL+++ W+P +S + + LLT NP
Sbjct: 111 PPKVTFRTRIYHCNINSQ------GVICLDILKDNWSPALTISKVLLSIC-SLLTDCNPA 163
Query: 161 DPLNGDAAAMYLDKPDKYKE 180
DPL G A Y+ ++
Sbjct: 164 DPLVGSIATQYMTNRAEHDR 183
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens}
SCOP: d.20.1.1
Length = 179
Score = 58.1 bits (141), Expect = 3e-11
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 13/80 (16%)
Query: 107 PPVV------YPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPT 160
P V Y P++ G + L+++ ++W+ LYD+ I + LL PN
Sbjct: 93 APTVKFLTPCYHPNVDTQ------GNISLDILKEKWSALYDVRTILLSIQ-SLLGEPNID 145
Query: 161 DPLNGDAAAMYLDKPDKYKE 180
PLN AA ++ + K
Sbjct: 146 SPLNTHAAELWKNPTAFKKY 165
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin
carrier protein, thioester ligase; 2.00A {Spisula
solidissima} SCOP: d.20.1.1
Length = 156
Score = 56.9 bits (138), Expect = 6e-11
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 14/80 (17%)
Query: 107 PPVV------YPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPT 160
PPVV + P++ SG +CL+++ + WT YD+ I + LL PN
Sbjct: 72 PPVVKFTTPCWHPNVDQ------SGNICLDILKENWTASYDVRTILLSLQ-SLLGEPNNA 124
Query: 161 DPLNGDAAAMYLDKPDKYKE 180
PLN AA M+ ++ +YK+
Sbjct: 125 SPLNAQAADMWSNQT-EYKK 143
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens}
SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Length = 155
Score = 56.5 bits (137), Expect = 8e-11
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 14/81 (17%)
Query: 107 PPVV------YPPSIYNHQSTLYSGTVCLNVI-NQEWTPLYDLSNIFETFLPQLLTYPNP 159
PP++ Y P++ +G +CL +I ++ W P + E L+ PN
Sbjct: 67 PPMIKFTTKIYHPNVDE------NGQICLPIISSENWKPCTKTCQVLEALN-VLVNRPNI 119
Query: 160 TDPLNGDAAAMYLDKPDKYKE 180
+PL D A + P+ +++
Sbjct: 120 REPLRMDLADLLTQNPELFRK 140
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics
consortium, SGC, ubiquitin- conjugating enzyme; 2.18A
{Homo sapiens} SCOP: d.20.1.1
Length = 169
Score = 56.6 bits (137), Expect = 1e-10
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 14/82 (17%)
Query: 107 PPVV------YPPSIYNHQSTLYSGTVCLNVINQE--WTPLYDLSNIFETFLPQLLTYPN 158
PPVV + P++ H +G C++ ++ W Y LS+I +L+ P
Sbjct: 86 PPVVKFITIPFHPNVDPH-----TGQPCIDFLDNPEKWNTNYTLSSILLALQ-VMLSNPV 139
Query: 159 PTDPLNGDAAAMYLDKPDKYKE 180
+P+N +AA + + Y+
Sbjct: 140 LENPVNLEAARILVKDESLYRT 161
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3,
crystallography, ligase; 1.75A {Saccharomyces
cerevisiae} PDB: 2eke_A 3ong_B
Length = 157
Score = 56.1 bits (136), Expect = 1e-10
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 9/76 (11%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVIN--QEWTPLYDLSNIFETFLPQLLTYPNPTDPLN 164
P Y P++Y SGT+CL+++N Q+W P L I + LL PNP P
Sbjct: 78 PAGFYHPNVYP------SGTICLSILNEDQDWRPAITLKQIV-LGVQDLLDSPNPNSPAQ 130
Query: 165 GDAAAMYLDKPDKYKE 180
A + +Y +
Sbjct: 131 EPAWRSFSRNKAEYDK 146
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small
ubiquitin like modifer, SMT3, ligase; 1.30A {Homo
sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A
1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A*
1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Length = 161
Score = 56.2 bits (136), Expect = 1e-10
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 15/82 (18%)
Query: 107 PPVV------YPPSIYNHQSTLYSGTVCLNVINQE--WTPLYDLSNIFETFLPQLLTYPN 158
PP + P++Y SGTVCL+++ ++ W P + I + +LL PN
Sbjct: 75 PPKCKFEPPLFHPNVYP------SGTVCLSILEEDKDWRPAITIKQIL-LGIQELLNEPN 127
Query: 159 PTDPLNGDAAAMYLDKPDKYKE 180
P +A +Y +Y++
Sbjct: 128 IQSPAQAEAYTIYCQNRVEYEK 149
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein
interaction, protein ligase complex; HET: DNA; 1.90A
{Schizosaccharomyces pombe}
Length = 163
Score = 56.2 bits (136), Expect = 1e-10
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQE--WTPLYDLSNIFETFLPQLLTYPNPTDPLN 164
P + P ++ H + SGTVCL+++N+E W P + I + LL PN P
Sbjct: 79 PKCRFTPPLF-HPNVYPSGTVCLSILNEEEGWKPAITIKQIL-LGIQDLLDDPNIASPAQ 136
Query: 165 GDAAAMYLDKPDKYKE 180
+A M+ +Y++
Sbjct: 137 TEAYTMFKKDKVEYEK 152
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure,
elongated shape, E3 ubiquitin ligase, E2 ubiquitin
conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1
PDB: 1fbv_C* 3sy2_C 3sqv_C
Length = 154
Score = 55.7 bits (135), Expect = 2e-10
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 14/81 (17%)
Query: 107 PPVV------YPPSIYNHQSTLYSGTVCLNVINQE-WTPLYDLSNIFETFLPQLLTYPNP 159
PP + Y P+I G VCL VI+ E W P + ++ + L+ P P
Sbjct: 65 PPKITFKTKIYHPNIDE------KGQVCLPVISAENWKPATKTDQVIQSLI-ALVNDPQP 117
Query: 160 TDPLNGDAAAMYLDKPDKYKE 180
PL D A Y K+ +
Sbjct: 118 EHPLRADLAEEYSKDRKKFCK 138
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural
genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo
sapiens} SCOP: d.20.1.1
Length = 169
Score = 54.3 bits (131), Expect = 7e-10
Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 17/84 (20%)
Query: 107 PPVV------YPPSIYNHQSTLYSGTVCLNVIN----QEWTPLYDLSNIFETFLPQLLTY 156
PP + Y P+I + G +CL+V+ W P +++ + + + L++
Sbjct: 67 PPQIRFLTPIYHPNIDSA------GRICLDVLKLPPKGAWRPSLNIATVLTS-IQLLMSE 119
Query: 157 PNPTDPLNGDAAAMYLDKPDKYKE 180
PNP DPL D ++ + + +
Sbjct: 120 PNPDDPLMADISSEFKYNKPAFLK 143
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1;
inhibition, hydrolase-ligase complex; 3.30A {Homo
sapiens} PDB: 4ddi_A
Length = 399
Score = 54.9 bits (132), Expect = 2e-09
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 13/80 (16%)
Query: 107 PPVV------YPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPT 160
PP V Y P+I ++ G++ L+++ +W+P +S + + LL PNP
Sbjct: 66 PPKVAFTTRIYHPNINSN------GSISLDILRSQWSPALTISKVLLSIC-SLLCDPNPD 118
Query: 161 DPLNGDAAAMYLDKPDKYKE 180
DPL + A +Y +KY
Sbjct: 119 DPLVPEIARIYKTDREKYNR 138
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein
complex, ubiquitin conjugating ENZY complex, peroxisomal
protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A
2y9o_A
Length = 172
Score = 52.8 bits (127), Expect = 2e-09
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 124 SGTVCLNVINQE-WTPLYDLSNIFETFLPQLLTYPNPTDPLNGDAAAMY-LDKPDKYKE 180
+G +CLN++ E WTP++DL + +LL P PL+ D + Y+
Sbjct: 100 TGEICLNILKPEEWTPVWDLLHCVHAVW-RLLREPVCDSPLDVDIGNIIRCGDMSAYQG 157
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle,
nucleotide-binding, UBL CON pathway; 2.50A {Homo
sapiens} PDB: 2edi_A
Length = 167
Score = 52.3 bits (126), Expect = 3e-09
Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 18/86 (20%)
Query: 107 PPVV------YPPSIYNHQSTLYSGTVCLNVINQE------WTPLYDLSNIFETFLPQLL 154
PP V + P+I +G +CL+++ + W P L ++
Sbjct: 77 PPKVKCLTKIWHPNITE------TGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFT 130
Query: 155 TYPNPTDPLNGDAAAMYLDKPDKYKE 180
N DPLN +AA +L + ++
Sbjct: 131 DLLNFDDPLNIEAAEHHLRDKEDFRN 156
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase,
UBL conjugation pathway, endo reticulum, membrane,
metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A
2kly_A
Length = 164
Score = 50.8 bits (122), Expect = 1e-08
Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 26/93 (27%)
Query: 107 PPVV------YPPSIYNHQSTLYSGTVCLNVINQE-------------WTPLYDLSNIFE 147
PP + + P+IY G VC+++++ W+P+ + I
Sbjct: 67 PPKMRFTCEMFHPNIYP------DGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILL 120
Query: 148 TFLPQLLTYPNPTDPLNGDAAAMYLDKPDKYKE 180
+ + +L PN N DA+ M+ D +++ +
Sbjct: 121 SVV-SMLAEPNDESGANVDASKMWRDDREQFYK 152
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase,
yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Length = 165
Score = 49.3 bits (118), Expect = 4e-08
Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 26/93 (27%)
Query: 107 PPVV------YPPSIYNHQSTLYSGTVCLNVINQE-------------WTPLYDLSNIFE 147
PP + P+IY +G VC+++++ W+P+ + I
Sbjct: 68 PPKLTFTPSILHPNIYP------NGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILL 121
Query: 148 TFLPQLLTYPNPTDPLNGDAAAMYLDKPDKYKE 180
+ + +L+ PN N DA ++ D +++
Sbjct: 122 SVM-SMLSEPNIESGANIDACILWRDNRPEFER 153
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation
pathway, structural genomics, structural genomics
consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB:
1pzv_A
Length = 172
Score = 47.8 bits (114), Expect = 2e-07
Identities = 19/93 (20%), Positives = 40/93 (43%), Gaps = 27/93 (29%)
Query: 107 PPVV------YPPSIYNHQSTLYSGTVCLNVINQ-------------EWTPLYDLSNIFE 147
PP + + P++ +G VC++++++ W P++ + I
Sbjct: 81 PPKMKFITEIWHPNVDK------NGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMI 134
Query: 148 TFLPQLLTYPNPTDPLNGDAAAMYL-DKPDKYK 179
+ + +L PN P N DAA + D+ ++K
Sbjct: 135 SVI-SMLADPNGDSPANVDAAKEWREDRNGEFK 166
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme
domain, E2 domain, ligase-ligas inhibitor complex; HET:
U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Length = 183
Score = 47.4 bits (113), Expect = 3e-07
Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 26/93 (27%)
Query: 107 PPVV------YPPSIYNHQSTLYSGTVCLNVIN-------------QEWTPLYDLSNIFE 147
PP + P+IY +G VC+++++ + W P ++ I
Sbjct: 71 PPAFRFLTKMWHPNIYE------TGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILL 124
Query: 148 TFLPQLLTYPNPTDPLNGDAAAMYLDKPDKYKE 180
+ + LL PN P N DA+ MY + +
Sbjct: 125 SVI-SLLNEPNTFSPANVDASVMYRKWKESKGK 156
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Length = 138
Score = 44.2 bits (105), Expect = 2e-06
Identities = 10/72 (13%), Positives = 20/72 (27%), Gaps = 13/72 (18%)
Query: 107 PPVV------YPPSIYNHQSTLYSGTVCLNV-INQEWTPLYDLSNIFETFLPQLLTYPNP 159
PP V P + +G V + ++W Y + + L + + P
Sbjct: 73 PPKVTFISKINLPCVNPT-----TGEVQTDFHTLRDWKRAYTMETLL-LDLRKEMATPAN 126
Query: 160 TDPLNGDAAAMY 171
+
Sbjct: 127 KKLRQPKEGETF 138
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G
structural genomics consortium, SGC, ligase; 2.40A
{Plasmodium falciparum} PDB: 3e95_C
Length = 156
Score = 43.9 bits (104), Expect = 3e-06
Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 14/70 (20%)
Query: 107 PPVV------YPPSIYNHQSTLYSGTVCLNVIN--QEWTPLYDLSNIFETFLPQLLTYPN 158
PP V + N G V N ++ + W Y + I + ++L+ N
Sbjct: 88 PPTVKFDTKIEMSCVDN------CGRVIKNNLHILKNWNRNYTIETILISLRQEMLSSAN 141
Query: 159 PTDPLNGDAA 168
P +
Sbjct: 142 KRLPQPNEGE 151
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 43.3 bits (101), Expect = 2e-05
Identities = 19/56 (33%), Positives = 33/56 (58%)
Query: 5 STTQVSKYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEK 60
STT +K + +K KKE+ E +E EE+E++++ KK K+ KE +++ K
Sbjct: 816 STTARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKKGIKETKENDEEFYKNK 871
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing,
nuclear protein, UBL conjugation pathway,ubiquitin,
ligase, structural genomics; 1.69A {Homo sapiens} SCOP:
d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Length = 160
Score = 41.2 bits (97), Expect = 3e-05
Identities = 9/73 (12%), Positives = 21/73 (28%), Gaps = 10/73 (13%)
Query: 107 PPVV------YPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPT 160
PP V + + + ++V+ + W Y + + L +L+
Sbjct: 92 PPFVRFVTKINMNGVNSSNGVVDPR--AISVLAK-WQNSYSIKVVL-QELRRLMMSKENM 147
Query: 161 DPLNGDAAAMYLD 173
Y +
Sbjct: 148 KLPQPPEGQCYSN 160
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating
enzyme, structural genomics consortium ,SGC; 1.80A {Homo
sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Length = 186
Score = 41.1 bits (96), Expect = 5e-05
Identities = 11/76 (14%), Positives = 23/76 (30%), Gaps = 9/76 (11%)
Query: 106 VPPVVYPPSIYNHQSTLYSGTVCLNVI-NQEWTPLYDLSNIFETFLPQLLTYPNPTDPLN 164
V PV+ + G +C+ ++ Q W+ Y + ++ L
Sbjct: 111 VLPVLSGGYVLG------GGALCMELLTKQGWSSAYSIESVIMQIN-ATLVKGKARVQFG 163
Query: 165 GDAAAMYLDK-PDKYK 179
+ L + Y
Sbjct: 164 ANKNQYNLARAQQSYN 179
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating
enzyme variant, UBC13, HUBC13, polyubiquitination,
ligase, signaling protein; NMR {Homo sapiens}
Length = 170
Score = 39.4 bits (92), Expect = 2e-04
Identities = 9/73 (12%), Positives = 21/73 (28%), Gaps = 10/73 (13%)
Query: 107 PPVV------YPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPT 160
PP V + + + ++V+ + W Y + + L +L+
Sbjct: 102 PPFVRFVTKINMNGVNSSNGVVDPR--AISVLAK-WQNSYSIKVVL-QELRRLMMSKENM 157
Query: 161 DPLNGDAAAMYLD 173
Y +
Sbjct: 158 KLPQPPEGQCYSN 170
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T*
1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S*
3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z
1pnu_T 1pny_T 1vor_W ...
Length = 237
Score = 39.3 bits (92), Expect = 3e-04
Identities = 8/41 (19%), Positives = 10/41 (24%)
Query: 20 EEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEK 60
E E E + EE K E + E
Sbjct: 194 VAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNS 234
Score = 38.9 bits (91), Expect = 4e-04
Identities = 8/41 (19%), Positives = 12/41 (29%)
Query: 20 EEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEK 60
+ GE EE E E ++ K E +
Sbjct: 188 AQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGT 228
Score = 38.2 bits (89), Expect = 6e-04
Identities = 7/42 (16%), Positives = 15/42 (35%)
Query: 18 KKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGE 59
E +E E + E+ K E ++ + E + +
Sbjct: 196 AGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNSDAQ 237
Score = 38.2 bits (89), Expect = 6e-04
Identities = 9/41 (21%), Positives = 14/41 (34%)
Query: 20 EEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEK 60
E + + G E E+ E + EE K + E
Sbjct: 184 EVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASED 224
Score = 37.8 bits (88), Expect = 7e-04
Identities = 7/41 (17%), Positives = 12/41 (29%)
Query: 20 EEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEK 60
G EE E + + +E K + E +
Sbjct: 190 VAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDS 230
Score = 37.8 bits (88), Expect = 7e-04
Identities = 9/42 (21%), Positives = 13/42 (30%)
Query: 19 KEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEK 60
+ E G E ++ E E EE K E +
Sbjct: 182 EAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASE 223
Score = 37.8 bits (88), Expect = 7e-04
Identities = 8/41 (19%), Positives = 13/41 (31%)
Query: 20 EEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEK 60
+ G EE E + + E+ K E + G
Sbjct: 189 QVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTD 229
Score = 37.0 bits (86), Expect = 0.001
Identities = 4/43 (9%), Positives = 12/43 (27%)
Query: 20 EEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRR 62
+ E E + +E K + + ++ +
Sbjct: 195 AAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNSDAQ 237
Score = 37.0 bits (86), Expect = 0.002
Identities = 7/41 (17%), Positives = 12/41 (29%)
Query: 17 KKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKE 57
+ E+ E + EE K E + E+
Sbjct: 196 AGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNSDA 236
Score = 36.6 bits (85), Expect = 0.002
Identities = 6/45 (13%), Positives = 15/45 (33%)
Query: 16 KKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEK 60
+ EE + E + + E+ E + + +E +
Sbjct: 175 RLTAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKA 219
Score = 32.8 bits (75), Expect = 0.038
Identities = 6/38 (15%), Positives = 13/38 (34%)
Query: 16 KKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEE 53
++ E EG EE + E + + + +
Sbjct: 200 SEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNSDAQ 237
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 38.7 bits (91), Expect = 4e-04
Identities = 11/45 (24%), Positives = 24/45 (53%)
Query: 16 KKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEK 60
K + E+ +EE+E+ E +E++++++ K K+ EK
Sbjct: 216 SKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEK 260
Score = 38.0 bits (89), Expect = 8e-04
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 13 KRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKE 57
K ++ E+EE E+E+ ++E EE+++EKK K ++ +K
Sbjct: 217 KTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
Score = 37.6 bits (88), Expect = 0.001
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 17 KKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKK 56
K E EE EE +EE++ +++ ++++EE+K K
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPK 254
Score = 37.6 bits (88), Expect = 0.001
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 18 KKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKE 57
+ E E EEE +EEK+ + + +++EEEKK +
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPK 254
Score = 35.3 bits (82), Expect = 0.006
Identities = 11/45 (24%), Positives = 28/45 (62%)
Query: 13 KRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKE 57
+ + +E +EE EE+E+ +++ E+++E+KK + +K ++
Sbjct: 216 SKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEK 260
Score = 34.1 bits (79), Expect = 0.014
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 8 QVSKYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKK 55
SK + ++ EEE+ E+ ++E ++EE++K+ K K+ EK
Sbjct: 214 WSSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
Score = 30.6 bits (70), Expect = 0.22
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 1 LQNSSTTQVSKYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEE 52
+ +S T V + ++ +EE E+ EEEEE+KK + KK +K +
Sbjct: 213 VWSSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWD 264
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 37.4 bits (86), Expect = 0.001
Identities = 10/51 (19%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 13 KRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRRT 63
+ ++K+ +E D + E+E ++K +K E+ + + ++ E K
Sbjct: 92 EEQRKRLQELDAA----SKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINN 138
Score = 36.7 bits (84), Expect = 0.002
Identities = 11/58 (18%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 8 QVSKYKRRKKKKEEEDEEGGGGEEEEEEEEKKKE-----EKKKEKKKKEEEKKKEGEK 60
+ K++ ++K+ +E + E+E E+ KK+ +++ E+ +K + + +K
Sbjct: 86 SIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADK 143
Score = 34.4 bits (78), Expect = 0.009
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 30 EEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRR 62
+E E K +EE++K ++ + K ++ R
Sbjct: 81 TQEPESIRKWREEQRKRLQELDAASKVMEQEWR 113
Score = 34.0 bits (77), Expect = 0.014
Identities = 7/48 (14%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 13 KRRKKKKEEEDEEGGGGEEE-EEEEEKKKEEKKKEKKKKEEEKKKEGE 59
K ++E E+ EE + + ++ E+ K + ++ ++ +
Sbjct: 103 AASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPD 150
Score = 32.1 bits (72), Expect = 0.064
Identities = 5/34 (14%), Positives = 15/34 (44%)
Query: 29 GEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRR 62
+ + +E + K +E+++K ++ K
Sbjct: 75 AQADRLTQEPESIRKWREEQRKRLQELDAASKVM 108
Score = 31.7 bits (71), Expect = 0.080
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 8/38 (21%)
Query: 31 EEEEE------EEKKKE--EKKKEKKKKEEEKKKEGEK 60
+E E EE++K E K E+E +++ +K
Sbjct: 81 TQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKK 118
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics,
structural genomics consortium, unknown function; 1.86A
{Plasmodium vivax} SCOP: d.20.1.1
Length = 125
Score = 35.7 bits (83), Expect = 0.002
Identities = 7/56 (12%), Positives = 23/56 (41%), Gaps = 7/56 (12%)
Query: 106 VPPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTD 161
+ +Y+ +G +CL+++ ++ P +S + + + +L+
Sbjct: 75 LQKPPKHTHVYS------NGDICLSLLGDDYNPSLSISGLVLSII-SMLSSAKEKK 123
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 0.003
Identities = 32/151 (21%), Positives = 48/151 (31%), Gaps = 50/151 (33%)
Query: 63 TLTFIRIGK------PALKPRPT---RCVE-GEGAPTRTLSVQ-IPLHRVHE------QG 105
T+ F IG P P+ +E EG P+ LS+ + +V +
Sbjct: 301 TVLFF-IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSH 359
Query: 106 VPP--VVYPPSIYN---------HQSTLYSGTVCLNVINQEWTPLYDLSNI--------F 146
+P V S+ N +LY + L + + D S I F
Sbjct: 360 LPAGKQVE-ISLVNGAKNLVVSGPPQSLYG--LNLTLRKAKAPSGLDQSRIPFSERKLKF 416
Query: 147 ET-FLP-------QLLTYPNPTDPLNGDAAA 169
FLP LL +D +N D
Sbjct: 417 SNRFLPVASPFHSHLLV--PASDLINKDLVK 445
Score = 29.2 bits (65), Expect = 0.73
Identities = 18/91 (19%), Positives = 26/91 (28%), Gaps = 38/91 (41%)
Query: 85 EGAPTRTLSVQIPLHRVHEQGVPPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSN 144
+ TR L++ H E + V P + + S L
Sbjct: 2 DAYSTRPLTLS---HGSLEHVLL--V-PTASFFIASQLQ--------------------- 34
Query: 145 IFETFLPQLLTYPNPTDPLNGDAAAMYLDKP 175
E F L P PT+ D D+P
Sbjct: 35 --EQFNKIL---PEPTEGFAAD------DEP 54
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 36.1 bits (83), Expect = 0.004
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 16 KKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRRT 63
+ ++ E E +E++E+ + KKK+++KKK G K +T
Sbjct: 66 EVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKVQT 113
Score = 33.7 bits (77), Expect = 0.023
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 2 QNSSTTQVSKYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKK 56
S V + R+ ++ ED+E +E+ + + KKK+KKKK+ K
Sbjct: 57 DKESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKV 111
Score = 32.6 bits (74), Expect = 0.064
Identities = 14/53 (26%), Positives = 22/53 (41%)
Query: 8 QVSKYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEK 60
+V+ + D+ G EE KKK KKK+ K ++E +K
Sbjct: 6 EVAASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDK 58
Score = 30.7 bits (69), Expect = 0.25
Identities = 9/43 (20%), Positives = 23/43 (53%)
Query: 15 RKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKE 57
R+ ++ +++ ++E+ + + KK+KKKK++ K
Sbjct: 69 RQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKV 111
Score = 30.3 bits (68), Expect = 0.31
Identities = 8/45 (17%), Positives = 20/45 (44%)
Query: 16 KKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEK 60
+ + + +E +E++E + KK+++KKK+
Sbjct: 65 DEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGP 109
Score = 29.9 bits (67), Expect = 0.40
Identities = 7/42 (16%), Positives = 23/42 (54%)
Query: 16 KKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKE 57
+ E+++ + + + + + ++KKK+KKK+ + + +
Sbjct: 73 RSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKVQTD 114
Score = 29.5 bits (66), Expect = 0.59
Identities = 8/50 (16%), Positives = 22/50 (44%)
Query: 16 KKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRRTLT 65
+ + E ++E +E+++ + K+++KKK+ + T
Sbjct: 64 VDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKVQT 113
Score = 29.1 bits (65), Expect = 0.88
Identities = 11/55 (20%), Positives = 23/55 (41%)
Query: 6 TTQVSKYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEK 60
S ++ EEG EE ++K++++KK + E++ + E
Sbjct: 6 EVAASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKES 60
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown
function, structural genomics consortium, SGC; 2.80A
{Plasmodium falciparum 3D7}
Length = 136
Score = 34.2 bits (79), Expect = 0.006
Identities = 8/54 (14%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
Query: 106 VPPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNP 159
+ +Y+ +G +CL+V+ ++ P +S + + + +L+
Sbjct: 89 LQKPPKHTHVYS------NGDICLSVLGDDYNPSLSISGLILSII-SMLSSAKE 135
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 34.7 bits (80), Expect = 0.013
Identities = 12/52 (23%), Positives = 22/52 (42%)
Query: 13 KRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRRTL 64
KR KK + E ++ E K + +++ ++ +E K EK L
Sbjct: 903 KRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNL 954
Score = 32.0 bits (73), Expect = 0.11
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 7/72 (9%)
Query: 1 LQNSSTTQVSKYKRRKKKKEEEDEEGGGG-------EEEEEEEEKKKEEKKKEKKKKEEE 53
L+ + +T+ K + ++ +EE +EE + K+ + + EKK EE
Sbjct: 954 LEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEW 1013
Query: 54 KKKEGEKRRTLT 65
K + L
Sbjct: 1014 ADKYKHETEQLV 1025
Score = 31.6 bits (72), Expect = 0.12
Identities = 12/58 (20%), Positives = 24/58 (41%)
Query: 8 QVSKYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRRTLT 65
+ R +EE + + + E+K EE + K + E+ E +++ TL
Sbjct: 978 EAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLL 1035
Score = 31.2 bits (71), Expect = 0.17
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
Query: 1 LQNSSTTQVSKYKRRKKKKEEEDEEGG-----GGEEEEEEEEKKKEEKKKEKKKKEEEKK 55
LQ ++K + +K K E E G E + + ++K +E+ KE K E+
Sbjct: 893 LQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMN 952
Query: 56 KEGEKRRTLT 65
T T
Sbjct: 953 NLEITYSTET 962
Score = 31.2 bits (71), Expect = 0.18
Identities = 7/58 (12%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 8 QVSKYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRRTLT 65
++ + +R+ ++ +E + E+ E + ++ + E + E+ + T
Sbjct: 929 KIMQLQRKIDEQNKEYKSL---LEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNAT 983
Score = 29.3 bits (66), Expect = 0.69
Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 13 KRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEE-EKKKEGEKRR 62
+ + +KK E+ E E+ + KE+ K +KEE ++ + +
Sbjct: 1002 QTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKE 1052
Score = 29.3 bits (66), Expect = 0.82
Identities = 10/63 (15%), Positives = 24/63 (38%)
Query: 2 QNSSTTQVSKYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKR 61
+ T K K + + E E +E+ K E+++ ++ ++ K+
Sbjct: 999 ELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETME 1058
Query: 62 RTL 64
+ L
Sbjct: 1059 KKL 1061
Score = 28.9 bits (65), Expect = 1.2
Identities = 5/44 (11%), Positives = 12/44 (27%)
Query: 14 RRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKE 57
K E + + E + E++ + +E
Sbjct: 948 LEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQE 991
Score = 28.5 bits (64), Expect = 1.5
Identities = 8/58 (13%), Positives = 17/58 (29%)
Query: 8 QVSKYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRRTLT 65
+ K + E E+ E E++ + +EE K ++
Sbjct: 947 LLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQ 1004
Score = 28.2 bits (63), Expect = 1.8
Identities = 10/52 (19%), Positives = 23/52 (44%)
Query: 11 KYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRR 62
+ + +K+ + E EE ++ + + E+ E K++ K E E+
Sbjct: 992 EIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN 1043
Score = 27.4 bits (61), Expect = 2.9
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 1 LQNSSTTQVSKYKRRKKKKEEEDEE------GGGGEEEEEEEEKKKEEKKKEKKKKEEEK 54
++ + VS+ K + + E EE E E E+K EE K+ + +E+
Sbjct: 1017 YKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDER 1076
Query: 55 KK 56
+
Sbjct: 1077 LR 1078
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 34.0 bits (78), Expect = 0.020
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 8 QVSKYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRRTLT 65
K + + E E EEEEE ++ + EKKK +++ + +++ E+
Sbjct: 919 AAKKQELEEILHEMEAR----IEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQ 972
Score = 33.7 bits (77), Expect = 0.027
Identities = 11/62 (17%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 8 QVSKYKRRKKKKEEE----DEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRRT 63
+ + + R +++EE E +++ + E++ EE++ ++K + EK K +
Sbjct: 928 ILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKK 987
Query: 64 LT 65
+
Sbjct: 988 ME 989
Score = 32.5 bits (74), Expect = 0.075
Identities = 17/64 (26%), Positives = 28/64 (43%)
Query: 1 LQNSSTTQVSKYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEK 60
L + + K K K K + + E ++EEK ++E +K K+K E E E+
Sbjct: 1016 LTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQ 1075
Query: 61 RRTL 64
L
Sbjct: 1076 IAEL 1079
Score = 30.6 bits (69), Expect = 0.27
Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 8 QVSKYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRRTL 64
+ + + KKK +++ + EE+ EEEE +++ + EK + + KK + +
Sbjct: 942 RSQQLQAEKKKMQQQMLDL---EEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIM 995
Score = 30.6 bits (69), Expect = 0.31
Identities = 13/51 (25%), Positives = 30/51 (58%)
Query: 11 KYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKR 61
+ + R K++E EE E EEE+++ ++ + +KKK +++ + E++
Sbjct: 913 EMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQ 963
Score = 29.8 bits (67), Expect = 0.50
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
Query: 11 KYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRRTLT 65
R KK+E EE E E + EE+++ ++ + EKKK ++ L
Sbjct: 914 MRVRLAAKKQEL-------EEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLE 961
Score = 29.8 bits (67), Expect = 0.56
Identities = 10/55 (18%), Positives = 21/55 (38%)
Query: 1 LQNSSTTQVSKYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKK 55
+++ + + K+++ +E EEE+K + K K K E
Sbjct: 988 MEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMIS 1042
Score = 29.0 bits (65), Expect = 0.83
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 7 TQVSKYKRRKKKKEEEDEEGGGGEEEEEEEEKK--KEEKKKEKKKKEEEKKKEGEKRR 62
Q +K + +K EE + EEEE+ K K + K E E E + + E++
Sbjct: 997 DQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKS 1054
Score = 27.5 bits (61), Expect = 3.1
Identities = 10/60 (16%), Positives = 23/60 (38%)
Query: 1 LQNSSTTQVSKYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEK 60
L+ + + ++ + +K D + E++ E + + KE+K EE
Sbjct: 960 LEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTN 1019
Score = 27.1 bits (60), Expect = 3.5
Identities = 12/57 (21%), Positives = 28/57 (49%)
Query: 7 TQVSKYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRRT 63
Q+++ K + KKEEE + E+E ++ +K +E + + +++ E +
Sbjct: 1081 AQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKA 1137
Score = 27.1 bits (60), Expect = 4.4
Identities = 10/52 (19%), Positives = 23/52 (44%)
Query: 3 NSSTTQVSKYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEK 54
S +K +++K+ EE E E+ + ++E + K +++K
Sbjct: 1133 ESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 33.9 bits (78), Expect = 0.021
Identities = 6/66 (9%), Positives = 15/66 (22%), Gaps = 8/66 (12%)
Query: 8 QVSKYKRRKKKKEEEDEEGGGGEE--------EEEEEEKKKEEKKKEKKKKEEEKKKEGE 59
++ + K +E G E + E + E + +
Sbjct: 897 KLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTEL 956
Query: 60 KRRTLT 65
+
Sbjct: 957 NYNGVP 962
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural
genomics consortium, (SGC), ligase; 1.82A {Homo sapiens}
SCOP: d.20.1.1
Length = 136
Score = 32.7 bits (75), Expect = 0.024
Identities = 7/39 (17%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNI 145
+ P +Y+ +G +CL+++ ++W+P + ++
Sbjct: 95 ENIPVHPHVYS------NGHICLSILTEDWSPALSVQSV 127
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 33.5 bits (77), Expect = 0.028
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 13 KRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKE 57
R + + +E D+ +EEEE+EE++ E + E + EEEK+ +
Sbjct: 331 TRGRGELDELDDMEELTDEEEEDEEEEAESQSPEPETSEEEKEDK 375
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 32.1 bits (72), Expect = 0.088
Identities = 11/55 (20%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 10 SKYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEK--KKEKKKKEEEKKKEGEKRR 62
+ KR +K E ED E+E E ++ +E + + + + + + +G+
Sbjct: 302 ERLKRGGRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQMQMQMQGGDGDGGA 356
Score = 27.5 bits (60), Expect = 2.9
Identities = 5/53 (9%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 11 KYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKK-KKEEEKKKEGEKRR 62
++ + K+ E +++ EK+ E ++ ++ + + + + +
Sbjct: 298 NFRSERLKRGGRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQMQMQMQGG 350
>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A
{Aquifex aeolicus} SCOP: d.27.1.1
Length = 112
Score = 30.4 bits (69), Expect = 0.11
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 32 EEEEEEKKKEEKKKEKKKKEEEKKKEGEK 60
E E K+ +K+E +K K GE
Sbjct: 83 VPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 27.7 bits (62), Expect = 0.93
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 30 EEEEEEEEKKKEEKKKEKKKKEEEKKKEGEK 60
+E E + K +K E KK +G +
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGE 110
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome,
ribosomal R ribosomal protein, STM1, eukaryotic
ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I
2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 1s1i_N 3izc_V 3izs_V
3jyw_N
Length = 184
Score = 31.1 bits (70), Expect = 0.13
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 31 EEEEEEEKKKEEKKKEKKKKEEEKKKEGEKR 61
E+EE K EKK + + + +KR
Sbjct: 151 TEKEEAVAKAAEKKVVRLTSRQRGRIAAQKR 181
Score = 29.5 bits (66), Expect = 0.48
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 32 EEEEEEKKKEEKKKEKKKKEEEKKKEGEKRRT 63
E+EE K +KK + ++ + ++R
Sbjct: 151 TEKEEAVAKAAEKKVVRLTSRQRGRIAAQKRI 182
Score = 28.0 bits (62), Expect = 1.6
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 30 EEEEEEEEKKKEEKKKEKKKKEEEKKKEGEK 60
E+EE K E+K ++ + ++
Sbjct: 151 TEKEEAVAKAAEKKVVRLTSRQRGRIAAQKR 181
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal,
ribosomal R ribosomal protein, eukaryotic ribosome,
RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB:
3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Length = 252
Score = 30.7 bits (69), Expect = 0.19
Identities = 9/49 (18%), Positives = 19/49 (38%)
Query: 11 KYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGE 59
+ + + + EE E++ E+ ++ EEE K+E
Sbjct: 185 RGALVDRTQPWSIMPDLYFYRDPEEVEQQVAEEATTEEAGEEEAKEEVT 233
Score = 28.0 bits (62), Expect = 1.7
Identities = 10/44 (22%), Positives = 20/44 (45%)
Query: 16 KKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGE 59
+ + + + EE E++ EE E+ +EE K++ E
Sbjct: 191 RTQPWSIMPDLYFYRDPEEVEQQVAEEATTEEAGEEEAKEEVTE 234
Score = 27.2 bits (60), Expect = 3.3
Identities = 8/48 (16%), Positives = 21/48 (43%)
Query: 13 KRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEK 60
R + + + EE E++ +E +E ++E +++ E+
Sbjct: 189 VDRTQPWSIMPDLYFYRDPEEVEQQVAEEATTEEAGEEEAKEEVTEEQ 236
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 31.2 bits (71), Expect = 0.22
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 33 EEEEEKKKEEKKKEKKKKEEEKKKEGEKRRTLTFIRI 69
E EE+ K K K ++ KK++ EK+ ++ + +
Sbjct: 2 ELEEDLKGRADKNFSKMGKKSKKEKKEKKPAVSVLTM 38
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 30.6 bits (69), Expect = 0.25
Identities = 9/31 (29%), Positives = 21/31 (67%)
Query: 32 EEEEEEKKKEEKKKEKKKKEEEKKKEGEKRR 62
+E E +KK+E+++ + + E + K++ E+ R
Sbjct: 393 QENENMRKKKEEEERRARMEAQLKEQRERER 423
Score = 30.2 bits (68), Expect = 0.35
Identities = 13/74 (17%), Positives = 35/74 (47%), Gaps = 12/74 (16%)
Query: 15 RKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRRT--------LTF 66
+ K+E E+ +++EEEE + + E + +++++ E K ++ ++ ++
Sbjct: 389 SEAKQENENMR----KKKEEEERRARMEAQLKEQRERERKMRKAKENSEESGEFDDLVSA 444
Query: 67 IRIGKPALKPRPTR 80
+R G+ K
Sbjct: 445 LRSGEVFDKDLSKL 458
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 30.4 bits (68), Expect = 0.26
Identities = 7/40 (17%), Positives = 15/40 (37%)
Query: 18 KKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKE 57
+ + G G +E +E K+ K E ++ +
Sbjct: 220 SLIQRSKCGPVGSDERVKEFKQSLIKYMETQRSYTALAEA 259
Score = 27.7 bits (61), Expect = 2.1
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 30 EEEEEEEEKKKEEKKKEKKKKEEEKKKEGEK 60
+E+ KE K+ K E ++
Sbjct: 227 CGPVGSDERVKEFKQSLIKYMETQRSYTALA 257
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 30.3 bits (67), Expect = 0.26
Identities = 9/62 (14%), Positives = 29/62 (46%)
Query: 2 QNSSTTQVSKYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKR 61
+ T + ++ ++++ + +E + E+E ++K +K E+ + + ++ E K
Sbjct: 92 ADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKI 151
Query: 62 RT 63
Sbjct: 152 NN 153
Score = 25.7 bits (55), Expect = 9.0
Identities = 8/44 (18%), Positives = 18/44 (40%)
Query: 11 KYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEK 54
K ++E E+ EE + + ++ EK K + ++
Sbjct: 116 LDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKA 159
>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein
complex, RNA-RNA complex, PROT complex, peptidyl
transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS;
2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB:
1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I*
1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I*
1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...
Length = 348
Score = 30.2 bits (67), Expect = 0.30
Identities = 4/42 (9%), Positives = 15/42 (35%)
Query: 17 KKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEG 58
EE ++ E++ + ++ + ++E +
Sbjct: 302 VATEEPTDDQDDDTASEDDADADDAAEEADDDDDDDEDAGDA 343
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus}
PDB: 3o4x_E 2bap_D
Length = 457
Score = 30.2 bits (68), Expect = 0.31
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 30 EEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRRTL 64
++ E E+K K K+K E+E+ ++ +KR L
Sbjct: 383 NQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQL 417
Score = 28.7 bits (64), Expect = 1.3
Identities = 12/83 (14%), Positives = 34/83 (40%), Gaps = 16/83 (19%)
Query: 9 VSKYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRRT----- 63
+ + + K+ ++ E EE+ K +EK ++++ ++++K+++
Sbjct: 373 RNMFLQAVKENQKRRET-----EEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDET 427
Query: 64 ------LTFIRIGKPALKPRPTR 80
L ++ G + R R
Sbjct: 428 GVMDSLLEALQSGAAFRRKRGPR 450
>3peh_A Endoplasmin homolog; structural genomics, structural genomics
consortium, SGC, HE protein, chaperone, ATP binding;
HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Length = 281
Score = 30.3 bits (69), Expect = 0.32
Identities = 8/45 (17%), Positives = 13/45 (28%)
Query: 12 YKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKK 56
+E + + + K EE KK +KK
Sbjct: 229 LHENVYTEEVLADIAKDMVNDPNYDSVKVEETDDPNKKTRTVEKK 273
Score = 28.3 bits (64), Expect = 1.4
Identities = 7/39 (17%), Positives = 14/39 (35%), Gaps = 3/39 (7%)
Query: 15 RKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEE 53
K D + + EE +K + +KK ++
Sbjct: 241 DIAKDMVNDPN---YDSVKVEETDDPNKKTRTVEKKVKK 276
Score = 27.6 bits (62), Expect = 2.4
Identities = 3/45 (6%), Positives = 13/45 (28%), Gaps = 4/45 (8%)
Query: 16 KKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEK 60
+ +E + ++ K ++ ++ K+
Sbjct: 229 LHENVYTEEV----LADIAKDMVNDPNYDSVKVEETDDPNKKTRT 269
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA
complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP:
d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A*
1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A*
1lpq_A* 1rr8_C* 1ej9_A*
Length = 591
Score = 30.1 bits (67), Expect = 0.37
Identities = 13/64 (20%), Positives = 26/64 (40%)
Query: 16 KKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRRTLTFIRIGKPALK 75
K K + ++ E +KK ++ +E+ K E + + E+ + + L
Sbjct: 492 KSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLD 551
Query: 76 PRPT 79
PR T
Sbjct: 552 PRIT 555
Score = 29.0 bits (64), Expect = 0.99
Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 8/85 (9%)
Query: 32 EEEEEEKK---KEEKKKEKKKKEEEKKKEG-----EKRRTLTFIRIGKPALKPRPTRCVE 83
+ + E +K KEEK K K++ E+ K+ G + + +I P L +
Sbjct: 136 KAQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERIANFKIEPPGLFRGRGNHPK 195
Query: 84 GEGAPTRTLSVQIPLHRVHEQGVPP 108
R + I ++ + VP
Sbjct: 196 MGMLKRRIMPEDIIINCSKDAKVPS 220
Score = 27.8 bits (61), Expect = 2.6
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 13 KRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRRTL 64
K + K K+++ E + +++K K+E++++ K EEE+ EG K + L
Sbjct: 1 KPKNKDKDKKVPE------PDNKKKKPKKEEEQKWKWWEEERYPEGIKWKFL 46
Score = 25.9 bits (56), Expect = 9.6
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 2 QNSSTTQVSKYKRRKKKKEEEDEEGGGGEEEEEEEEKKK 40
+V + +KKK ++E+E+ EEE E K
Sbjct: 4 NKDKDKKVPEPDNKKKKPKKEEEQKWKWWEEERYPEGIK 42
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A
{Saccharomyces cerevisiae} SCOP: e.15.1.1
Length = 223
Score = 29.9 bits (67), Expect = 0.39
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 33 EEEEEKKKEEKKKEKKKKEEEKKKEGEK 60
+ ++E+KK+ +EKK+ E++K E
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 29.1 bits (65), Expect = 0.70
Identities = 7/28 (25%), Positives = 19/28 (67%), Gaps = 3/28 (10%)
Query: 32 EEEEEEKK---KEEKKKEKKKKEEEKKK 56
+ ++E+KK +EKK+ + ++E+ ++
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA
complex; HET: DNA; 2.27A {Leishmania donovani}
Length = 432
Score = 30.0 bits (67), Expect = 0.39
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 32 EEEEEEKK---KEEKKKEKKKKEEEKKK 56
+ E+K KEEKK K+K++ E +
Sbjct: 112 LVQREKKLSRTKEEKKAIKEKQDAEAEP 139
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair,
endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens}
SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Length = 318
Score = 30.0 bits (68), Expect = 0.39
Identities = 19/61 (31%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Query: 13 KRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRRTLTFIRIGKP 72
KR KK ED + E E +K K KK K+ E E GKP
Sbjct: 3 KRGKKGAVAEDGD---ELRTEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKP 59
Query: 73 A 73
A
Sbjct: 60 A 60
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 29.7 bits (67), Expect = 0.49
Identities = 8/29 (27%), Positives = 19/29 (65%)
Query: 34 EEEEKKKEEKKKEKKKKEEEKKKEGEKRR 62
+E +K++E ++K ++ K ++K E E+
Sbjct: 310 KENQKRRETEEKMRRAKLAKEKAEKERLE 338
Score = 29.3 bits (66), Expect = 0.58
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 30 EEEEEEEEKKKEEKKKEKKKKEEEKKKE 57
++ E E+K K K+K E+E+ ++
Sbjct: 312 NQKRRETEEKMRRAKLAKEKAEKERLEK 339
Score = 28.9 bits (65), Expect = 0.74
Identities = 9/46 (19%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
Query: 9 VSKYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEK 54
+ + + K+ ++ E EE+ + K K+K +K++ E++
Sbjct: 302 RNMFLQAVKENQKR-------RETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 28.9 bits (65), Expect = 0.75
Identities = 6/30 (20%), Positives = 18/30 (60%)
Query: 33 EEEEEKKKEEKKKEKKKKEEEKKKEGEKRR 62
+E +++++ E+K + K +EK ++ +
Sbjct: 310 KENQKRRETEEKMRRAKLAKEKAEKERLEK 339
Score = 28.9 bits (65), Expect = 0.85
Identities = 8/31 (25%), Positives = 20/31 (64%)
Query: 31 EEEEEEEKKKEEKKKEKKKKEEEKKKEGEKR 61
+E ++ + +E+ ++ K KE+ +K+ EK+
Sbjct: 310 KENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 27.0 bits (60), Expect = 3.6
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 30 EEEEEEEEKKKEEKKKEKKKKEEEKKKE 57
++ E EEK + K ++K ++E +K+
Sbjct: 313 QKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 26.6 bits (59), Expect = 5.6
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 38 KKKEEKKKEKKKKEEEKKKEGEKRR 62
K+ +K++E ++K K EK
Sbjct: 309 VKENQKRRETEEKMRRAKLAKEKAE 333
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A
{Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Length = 417
Score = 29.5 bits (65), Expect = 0.65
Identities = 11/41 (26%), Positives = 24/41 (58%)
Query: 20 EEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEK 60
EE++EE E+EEE+++ E+ E +++++ E+
Sbjct: 370 EEDEEEADEDEDEEEDDDHGLEDDDGESAEEQDDFAGRPEQ 410
Score = 28.0 bits (61), Expect = 1.8
Identities = 8/36 (22%), Positives = 21/36 (58%)
Query: 20 EEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKK 55
E+E+E+ G E+++ E ++++ + ++ E K
Sbjct: 380 EDEEEDDDHGLEDDDGESAEEQDDFAGRPEQAPECK 415
Score = 28.0 bits (61), Expect = 2.2
Identities = 6/38 (15%), Positives = 18/38 (47%)
Query: 20 EEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKE 57
+EDE+ ++ E++ + ++++ E+ E
Sbjct: 376 ADEDEDEEEDDDHGLEDDDGESAEEQDDFAGRPEQAPE 413
Score = 27.2 bits (59), Expect = 3.2
Identities = 7/39 (17%), Positives = 19/39 (48%)
Query: 19 KEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKE 57
EEE +E EE+++ + + + E++ + ++
Sbjct: 372 DEEEADEDEDEEEDDDHGLEDDDGESAEEQDDFAGRPEQ 410
Score = 26.1 bits (56), Expect = 7.4
Identities = 9/40 (22%), Positives = 17/40 (42%)
Query: 20 EEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGE 59
EE DE+ E+++ E E +E+ ++ E
Sbjct: 374 EEADEDEDEEEDDDHGLEDDDGESAEEQDDFAGRPEQAPE 413
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A
{Geobacillus kaustophilus}
Length = 213
Score = 28.9 bits (65), Expect = 0.79
Identities = 10/48 (20%), Positives = 20/48 (41%)
Query: 13 KRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEK 60
+ K+ E+ + E+ EEE + E++ EE +E +
Sbjct: 3 QGEKQVMEQATYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAE 50
Score = 27.8 bits (62), Expect = 1.7
Identities = 9/44 (20%), Positives = 18/44 (40%)
Query: 16 KKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGE 59
++++ +EE EEE +E +E + E+ E
Sbjct: 17 PEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTAEE 60
Score = 27.4 bits (61), Expect = 2.2
Identities = 11/46 (23%), Positives = 17/46 (36%)
Query: 16 KKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKR 61
+ EE+ G EE EE + EK ++ K + E
Sbjct: 27 AAPQPEEESGGVPLEEAGGEEAAEPAEKAPTAEELAAAKAQIAELE 72
Score = 27.0 bits (60), Expect = 3.2
Identities = 10/53 (18%), Positives = 19/53 (35%)
Query: 7 TQVSKYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGE 59
Q K + +E + E EE + E++ E+ EE + +
Sbjct: 2 EQGEKQVMEQATYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEK 54
Score = 25.5 bits (56), Expect = 9.8
Identities = 10/40 (25%), Positives = 14/40 (35%)
Query: 16 KKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKK 55
+ EE E EE K + + E K E E +
Sbjct: 42 EAGGEEAAEPAEKAPTAEELAAAKAQIAELEAKLSEMEHR 81
>2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli,
hydrolase; 1.90A {Escherichia coli}
Length = 303
Score = 28.8 bits (65), Expect = 0.81
Identities = 3/54 (5%), Positives = 14/54 (25%), Gaps = 3/54 (5%)
Query: 7 TQVSKYKRRKKK---KEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKE 57
++++ + + K +E E + + ++
Sbjct: 242 NYLTEFDGKPFQSVSKVDESLEKLADGDLGTLVPRGSMAISDPNSSSVDKLAAA 295
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone
chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A
{Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A
3c9b_A 3q33_B* 3q35_B* 3dm7_A
Length = 264
Score = 28.9 bits (64), Expect = 0.83
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 20 EEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKK 56
+EE E G + + E+++ E +E KK
Sbjct: 225 DEEGESGLSADGDSEDDDGSLGEVDLPLSDEEPSSKK 261
Score = 27.4 bits (60), Expect = 2.7
Identities = 9/45 (20%), Positives = 18/45 (40%)
Query: 12 YKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKK 56
Y ++ E+E+ E G + + E++ + EE K
Sbjct: 216 YAEAQRDLEDEEGESGLSADGDSEDDDGSLGEVDLPLSDEEPSSK 260
Score = 27.0 bits (59), Expect = 4.0
Identities = 6/37 (16%), Positives = 16/37 (43%)
Query: 20 EEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKK 56
E E G+ E+++ + + ++ +K+K
Sbjct: 227 EGESGLSADGDSEDDDGSLGEVDLPLSDEEPSSKKRK 263
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_B
Length = 241
Score = 28.7 bits (64), Expect = 0.83
Identities = 11/52 (21%), Positives = 22/52 (42%)
Query: 9 VSKYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEK 60
V + K EE + + ++KE +++E + EEK E ++
Sbjct: 178 VKILRGELSKDEEWEVMVDLFYHKTLPTAEQKEAEEEEGAEGAEEKVAEVKE 229
Score = 28.7 bits (64), Expect = 0.95
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 20 EEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGE 59
+ E EEEE + EEK E K+ E E+ + +
Sbjct: 200 HKTLPTAEQKEAEEEEGAEGAEEKVAEVKEGEAEQNTDNK 239
Score = 28.7 bits (64), Expect = 1.0
Identities = 9/45 (20%), Positives = 22/45 (48%)
Query: 15 RKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGE 59
+ ++ E + E+++ +EE+ E +++ + KEGE
Sbjct: 187 KDEEWEVMVDLFYHKTLPTAEQKEAEEEEGAEGAEEKVAEVKEGE 231
>3v2c_Y Ribosome-associated inhibitor A; RAIA, protein Y, stress RES
stationary phase, ribosome hibernation,
ribosome-inhibitor; 2.70A {Escherichia coli k-12} PDB:
3v2e_Y 1n3g_A 1l4s_A 1voq_a 1vos_a 1vov_a 1vox_a 1voz_a
Length = 119
Score = 28.0 bits (63), Expect = 0.91
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 8 QVSKYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEE 42
Q++K + + + + EE EEE
Sbjct: 84 QLNKLQHKGEARRAATSVKDANFVEEVEEEHHHHH 118
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase,
UBL conjugation pathway, structural genomics consortium
(SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Length = 187
Score = 28.6 bits (64), Expect = 0.93
Identities = 12/71 (16%), Positives = 18/71 (25%), Gaps = 4/71 (5%)
Query: 107 PPVVY-PPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPL-- 163
PP +Y + + W P + +S I L + PT
Sbjct: 77 PPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLL-SFMVEKGPTLGSIE 135
Query: 164 NGDAAAMYLDK 174
D L
Sbjct: 136 TSDFTKRQLAV 146
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange
factor, coiled-coil, complex (HSP24/HSP70); 2.80A
{Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Length = 197
Score = 28.5 bits (64), Expect = 1.0
Identities = 10/52 (19%), Positives = 17/52 (32%)
Query: 13 KRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRRTL 64
K + + EE E E E E E+ +K + + E +
Sbjct: 7 KTPEGQAPEEIIMDQHEEIEAVEPEASAEQVDPRDEKVANLEAQLAEAQTRE 58
Score = 25.8 bits (57), Expect = 6.7
Identities = 9/43 (20%), Positives = 20/43 (46%)
Query: 18 KKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEK 60
KE++ EG EE ++ ++ E + E ++ + + E
Sbjct: 3 SKEQKTPEGQAPEEIIMDQHEEIEAVEPEASAEQVDPRDEKVA 45
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90,
heat shock protein, ATP-binding, heat shock,
nucleotide-binding, acetylation; HET: ATP; 3.1A
{Saccharomyces cerevisiae}
Length = 677
Score = 29.0 bits (65), Expect = 1.1
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 28 GGEEEEEEEEKKKEEKKKEKKKKEEEKKKE 57
E EE +EEK + EK+ ++ + + KE
Sbjct: 527 DFELEETDEEKAEREKEIKEYEPLTKALKE 556
Score = 28.2 bits (63), Expect = 1.6
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 17 KKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKK 48
+ K D EE +EE+ ++E++ KE +
Sbjct: 517 EGKTLVDITKDFELEETDEEKAEREKEIKEYE 548
>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO
11200H, transferase, PSI-2; 2.30A {Rhodospirillum
rubrum}
Length = 508
Score = 28.3 bits (64), Expect = 1.3
Identities = 7/50 (14%), Positives = 17/50 (34%), Gaps = 7/50 (14%)
Query: 124 SGTVCLNVINQEW-TPLYDLSNIFETFLPQLLTYPNPTDP---LNGDAAA 169
+++ + L L++I + +P + +AAA
Sbjct: 183 LEGGFIDLASGTVEADLVALAHIPPSAVPPAH---PTHRVLGAVTAEAAA 229
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD,
oskar mRNA localization, translation; 1.90A {Drosophila
melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Length = 165
Score = 27.9 bits (62), Expect = 1.4
Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 5/64 (7%)
Query: 21 EEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRRTLTFIRIGKPALKPRPTR 80
E DE+G G +E+ K ++ + E E+ R L+P P R
Sbjct: 14 EVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVR-----NEDDDELEPGPQR 68
Query: 81 CVEG 84
VEG
Sbjct: 69 SVEG 72
>1feu_A 50S ribosomal protein L25; general stress protein CTC, 5S
rRNA-protein complex, cadmium IONS, ribosome; 2.30A
{Thermus thermophilus} SCOP: b.53.1.1 PDB: 2j01_Z 1vsp_T
2hgj_Y 2hgq_Y 2hgu_Y 1vsa_T 2j03_Z 2jl6_Z 2jl8_Z 2v47_Z
2v49_Z 2wdi_Z 2wdj_Z 2wdl_Z 2wdn_Z 2wh2_Z 2wh4_Z 2wrj_Z
2wrl_Z 2wro_Z ...
Length = 206
Score = 28.1 bits (63), Expect = 1.5
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 15 RKKKKEEEDEEGGGGEEEEEEEEKKKEEK 43
+K E+ E E ++ K++EE+
Sbjct: 178 EDVEKLAEEAAAEVAEPEVIKKGKEEEEE 206
Score = 27.3 bits (61), Expect = 2.1
Identities = 6/29 (20%), Positives = 15/29 (51%)
Query: 16 KKKKEEEDEEGGGGEEEEEEEEKKKEEKK 44
+ ++ +E E E ++ K+EE++
Sbjct: 178 EDVEKLAEEAAAEVAEPEVIKKGKEEEEE 206
Score = 26.9 bits (60), Expect = 3.4
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 17 KKKEEEDEEGGGGEEEEEEEEKKKEEKKK 45
+ E+ EE E E +K KEE+++
Sbjct: 178 EDVEKLAEEAAAEVAEPEVIKKGKEEEEE 206
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 421
Score = 28.3 bits (62), Expect = 1.7
Identities = 13/62 (20%), Positives = 27/62 (43%)
Query: 1 LQNSSTTQVSKYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEK 60
L+ + ++ K + + +E+G G++ ++ KK KK KK +K +K
Sbjct: 341 LRQAKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKK 400
Query: 61 RR 62
Sbjct: 401 PA 402
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_V 4a1c_V 4a1e_V
Length = 239
Score = 27.8 bits (61), Expect = 1.8
Identities = 4/31 (12%), Positives = 15/31 (48%)
Query: 38 KKKEEKKKEKKKKEEEKKKEGEKRRTLTFIR 68
+ E+ +K K ++ + + ++R+ +
Sbjct: 14 ARDEKLRKAKAEQRKASSAQMKQRKAEWISK 44
Score = 25.5 bits (55), Expect = 9.9
Identities = 6/69 (8%), Positives = 23/69 (33%), Gaps = 5/69 (7%)
Query: 13 KRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRRTLTFIRIGKP 72
K+ + ++ + E+ + + +++K + + +K + + +
Sbjct: 11 KKLARDEKLRKAK-----AEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEKRK 65
Query: 73 ALKPRPTRC 81
A K
Sbjct: 66 ARKTGAFYV 74
>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_Q 4a1c_Q 4a1e_Q
Length = 183
Score = 27.6 bits (61), Expect = 1.8
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 31 EEEEEEEKKKEEKKKEKKKKEEEKKK 56
+E + +K+ K KK + +K K
Sbjct: 153 QEVAAKVRKEAPKDAAKKVPKTKKGK 178
Score = 25.7 bits (56), Expect = 9.3
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 30 EEEEEEEEKKKEEKKKEKKKKEEEKKK 56
+E + K+ + +K K ++ K
Sbjct: 153 QEVAAKVRKEAPKDAAKKVPKTKKGKL 179
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga
maritima}
Length = 352
Score = 27.8 bits (62), Expect = 1.8
Identities = 5/41 (12%), Positives = 11/41 (26%)
Query: 14 RRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEK 54
++ + E + E K+ K + K
Sbjct: 190 VKQGEMLAEARKFFAKVSGRVEVVDYSTRKEIRIYKTKRRK 230
Score = 27.0 bits (60), Expect = 4.1
Identities = 4/39 (10%), Positives = 12/39 (30%)
Query: 13 KRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKE 51
++ + E + E + ++ + K K
Sbjct: 190 VKQGEMLAEARKFFAKVSGRVEVVDYSTRKEIRIYKTKR 228
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 184
Score = 27.6 bits (61), Expect = 1.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 31 EEEEEEEKKKEEKKKEKKKKEEEKKKE 57
E+E+ K EE+ +KKK ++K K+
Sbjct: 151 TEKEQIVPKPEEEVAQKKKISQKKLKK 177
Score = 26.8 bits (59), Expect = 3.4
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 30 EEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRR 62
E+E+ K +EE ++KK +++ KK+ R
Sbjct: 151 TEKEQIVPKPEEEVAQKKKISQKKLKKQKLMAR 183
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 28.0 bits (61), Expect = 2.0
Identities = 8/63 (12%), Positives = 19/63 (30%)
Query: 16 KKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRRTLTFIRIGKPALK 75
+ E + ++E E K + + ++ K E K ++ + K
Sbjct: 101 SEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANKTEKEVQPDVPKNTEKTLKP 160
Query: 76 PRP 78
Sbjct: 161 KEI 163
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat
shock protein, CO-chaperone, ATP-binding, heat shock;
3.0A {Saccharomyces cerevisiae}
Length = 405
Score = 28.0 bits (63), Expect = 2.0
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 28 GGEEEEEEEEKKKEEKKKEKKKKEEEKKKE 57
E EE +EEK + EK+ ++ + + KE
Sbjct: 255 DFELEETDEEKAEREKEIKEYEPLTKALKE 284
Score = 27.2 bits (61), Expect = 3.5
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 27 GGGEEEEEEEEKKKEEKKKEKK 48
EE +EE+ ++E++ KE +
Sbjct: 255 DFELEETDEEKAEREKEIKEYE 276
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein,
putative universal protein A structural genomics,
NPPSFA; 2.75A {Pyrococcus horikoshii}
Length = 170
Score = 27.3 bits (61), Expect = 2.1
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 26 GGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRRTLTFIRIGKPA 73
E ++ +EK KEE ++ ++K EE K+ + T IR G P
Sbjct: 59 DNAEIELKDIKEKLKEEASRKLQEKAEEVKRAFRAKNVRTIIRFGIPW 106
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold,
winged-helix-turn-helix, antiparallel-coiled-COI domain,
ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces
cerevisiae}
Length = 1108
Score = 27.9 bits (61), Expect = 2.1
Identities = 16/107 (14%), Positives = 34/107 (31%)
Query: 2 QNSSTTQVSKYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKR 61
N + +++ +EE EE + ++ K K K E++ KK
Sbjct: 56 SNGEKNADTNVGDTPDHTQDKKHGLEEEKEEHEENNSENKKIKSNKSKTEDKNKKVVVPV 115
Query: 62 RTLTFIRIGKPALKPRPTRCVEGEGAPTRTLSVQIPLHRVHEQGVPP 108
+F + + + V++ H+ +PP
Sbjct: 116 LADSFEQEASREVDASKGLTNSETLQVEQDGKVRLSHQVRHQVALPP 162
>3iz5_e 60S ribosomal protein L7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
PDB: 3izr_e
Length = 244
Score = 27.5 bits (60), Expect = 2.1
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 38 KKKEEKKKEKKKKEEEKKKEGEKRRTLTFIR 68
+++E EKK+K +K + + + + R
Sbjct: 19 RREEVWAAEKKQKVAAEKIKAAENTKVIYAR 49
Score = 26.3 bits (57), Expect = 6.3
Identities = 7/71 (9%), Positives = 25/71 (35%), Gaps = 5/71 (7%)
Query: 13 KRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRRTLTFIRIGKP 72
+R++++ E+ +++ EK K + + E+ + + +++ +
Sbjct: 16 LKRRREEVWAAEK-----KQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELVQLKRE 70
Query: 73 ALKPRPTRCVE 83
A
Sbjct: 71 ARMKGGFYVSP 81
>3u5c_J 40S ribosomal protein S9-A; translation, ribosome, ribosomal,
ribosomal R ribosomal protein, eukaryotic ribosome,
RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB:
3izb_C 3o30_E 3o2z_E 3u5g_J 1s1h_D 3jyv_D*
Length = 197
Score = 27.4 bits (60), Expect = 2.2
Identities = 6/37 (16%), Positives = 15/37 (40%)
Query: 4 SSTTQVSKYKRRKKKKEEEDEEGGGGEEEEEEEEKKK 40
+S ++ R ++ E G +E +E ++
Sbjct: 161 TSPFGGARPGRVARRNAARKAEASGEAADEADEADEE 197
>3izc_e 60S ribosomal protein RPL7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB:
3izs_e 3o58_G 3o5h_G 3u5e_F 3u5i_F
Length = 244
Score = 27.5 bits (60), Expect = 2.3
Identities = 4/34 (11%), Positives = 15/34 (44%)
Query: 38 KKKEEKKKEKKKKEEEKKKEGEKRRTLTFIRIGK 71
K +++ ++ + +K +++R + R
Sbjct: 17 KAQQKTAEQVAAERAARKAANKEKRAIILERNAA 50
Score = 27.1 bits (59), Expect = 3.2
Identities = 7/71 (9%), Positives = 22/71 (30%), Gaps = 5/71 (7%)
Query: 13 KRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRRTLTFIRIGKP 72
K+ K +++ ++ E K ++K+ + ++ + I+ +
Sbjct: 14 KKSKAQQKTAEQV-----AAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAKRD 68
Query: 73 ALKPRPTRCVE 83
A
Sbjct: 69 AKAAGSYYVEA 79
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics,
stress response protein, chaperone, structural GE
consortium, SGC; 2.50A {Leishmania major}
Length = 444
Score = 27.7 bits (62), Expect = 2.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 27 GGGEEEEEEEEKKKEEKKKEKKKKEEEKKKE 57
G EE EEEK++ E++K +K + KE
Sbjct: 273 EGVHFEESEEEKQQREEEKAACEKLCKTMKE 303
Score = 26.1 bits (58), Expect = 7.6
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 26 GGGGEEEEEEEEKKKEEKKKEKK 48
G EE EEE++++EE+K +
Sbjct: 273 EGVHFEESEEEKQQREEEKAACE 295
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase,
SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A
{Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13
a.187.1.1 PDB: 2nog_A
Length = 304
Score = 27.7 bits (61), Expect = 2.5
Identities = 8/52 (15%), Positives = 27/52 (51%)
Query: 6 TTQVSKYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKE 57
++ +++ K ++ E G + + EE++K ++ + ++E ++K+
Sbjct: 53 DQEIYYFRKTVGYKVPKNTELGSDATKVQREEQRKIDEAEPLTEEEIQEKEN 104
>4a18_E RPL6; ribosome, eukaryotic initiation factor 6, EIF6, transla large
ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila}
PDB: 4a19_E 4a1b_E 4a1d_E
Length = 191
Score = 27.3 bits (60), Expect = 2.5
Identities = 8/48 (16%), Positives = 26/48 (54%)
Query: 3 NSSTTQVSKYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKK 50
N++ + + R K +K ++ EE++++E +++ +K+ ++
Sbjct: 108 NTAKFEDDYFGREKARKNHKNLFKAELTEEQKKKETERKNARKQDQQA 155
>2l16_A SEC-independent protein translocase protein tatad; membrane
protein, protein transport; NMR {Bacillus subtilis}
Length = 78
Score = 26.1 bits (57), Expect = 2.6
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 30 EEEEEEEEKKKEEKKKEKKKKEEEKKKE 57
+E+EE+ + K++K E
Sbjct: 50 GDEKEEKSAELTAVKQDKNAGLEHHHHH 77
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 27.6 bits (60), Expect = 2.6
Identities = 9/60 (15%), Positives = 26/60 (43%)
Query: 2 QNSSTTQVSKYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKR 61
+ + ++ + +E + E + + K++E K +++E+ KEG ++
Sbjct: 508 EMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQK 567
Score = 27.6 bits (60), Expect = 3.0
Identities = 11/57 (19%), Positives = 27/57 (47%)
Query: 8 QVSKYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRRTL 64
Q+++ + + +++E + +E+E+ KE +KE + + E + K R
Sbjct: 530 QLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMRRR 586
Score = 27.2 bits (59), Expect = 4.0
Identities = 8/62 (12%), Positives = 27/62 (43%)
Query: 1 LQNSSTTQVSKYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEK 60
L +++++ +E ++ E + + K++E+ K +E+E+ +
Sbjct: 506 LHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGF 565
Query: 61 RR 62
++
Sbjct: 566 QK 567
Score = 26.8 bits (58), Expect = 5.0
Identities = 9/61 (14%), Positives = 26/61 (42%)
Query: 2 QNSSTTQVSKYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKR 61
+ T + + + + K E E + + E+ E+K++ ++ ++ ++ E
Sbjct: 479 DQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMEND 538
Query: 62 R 62
R
Sbjct: 539 R 539
Score = 26.5 bits (57), Expect = 5.7
Identities = 10/54 (18%), Positives = 26/54 (48%)
Query: 11 KYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRRTL 64
++ ++ +K E D E+E K +E+++ K+ ++E + + + L
Sbjct: 526 EHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDL 579
Score = 26.1 bits (56), Expect = 8.3
Identities = 8/49 (16%), Positives = 26/49 (53%)
Query: 14 RRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRR 62
R + KE+E +E+E+ ++ +++ + K + ++ + + +R+
Sbjct: 539 RVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMRRRK 587
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide
release factor 1, ribosome, structural genomics, BSGC
structure funded by NIH; 2.65A {Thermotoga maritima}
SCOP: e.38.1.1 PDB: 2fvo_A
Length = 342
Score = 27.6 bits (62), Expect = 2.6
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 9 VSKYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKK 48
+ R K+ +E + GE E E E+ +KE + ++
Sbjct: 36 ENITNRIKETQEFIELLREEGENELEIEKYEKELDQLYQE 75
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer,
hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A
Length = 448
Score = 27.3 bits (61), Expect = 2.8
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 27 GGGEEEEEEEEKKKEEKKKEKKKKEEEKKKE 57
G E E+EEEKKK+E+KK K + + K+
Sbjct: 257 EGLELPEDEEEKKKQEEKKTKFENLCKIMKD 287
Score = 26.1 bits (58), Expect = 8.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 26 GGGGEEEEEEEEKKKEEKKKEKK 48
G E+EEE+KK+EEKK + +
Sbjct: 257 EGLELPEDEEEKKKQEEKKTKFE 279
>3kio_B Ribonuclease H2 subunit B; aicardi-goutieres syndrome, RNAse H2,
protein complex, autoimmune disease, endonuclease,
hydrolase, metal-binding; 2.90A {Mus musculus} PDB:
3p5j_B 3puf_B 3p56_B
Length = 332
Score = 27.5 bits (60), Expect = 2.9
Identities = 10/48 (20%), Positives = 18/48 (37%)
Query: 13 KRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEK 60
K + + E +E ++ + KK K +K + K G K
Sbjct: 269 KLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKVDKSGMK 316
Score = 26.3 bits (57), Expect = 6.7
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Query: 15 RKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEK 60
+K K +E E +E+ + K+ K +K K +K K
Sbjct: 268 KKLKLSDEPVE----AKEDYTKFNTKDLKTGKKNSKMTAAQKALAK 309
Score = 25.9 bits (56), Expect = 7.7
Identities = 6/53 (11%), Positives = 18/53 (33%)
Query: 4 SSTTQVSKYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKK 56
+ + ++ K +E E + ++ K ++ K ++ K
Sbjct: 258 PPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKV 310
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A
{Saccharomyces cerevisiae}
Length = 1219
Score = 27.5 bits (61), Expect = 3.0
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 30 EEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRRTL 64
E EE E E ++E+ +E K +K+ +L
Sbjct: 30 ENEELENGNDNNEAEEEEIDEETGAIKSTKKKISL 64
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 27.4 bits (61), Expect = 3.0
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 4 SSTTQVSKYKRRKKKKEEEDEEGGGGEEEEEEEE 37
S+ K++KKK + E GE EE E
Sbjct: 366 QSSASRKTQKKKKKKASKTAENATSGETLEENEA 399
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase;
HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Length = 484
Score = 27.2 bits (61), Expect = 3.3
Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 7/50 (14%)
Query: 124 SGTVCLNVINQEW-TPLYDLSNIFETFLPQLLTYPNPTDP---LNGDAAA 169
+GT+ L+V ++W + ++ +P L ++ L + A
Sbjct: 172 AGTMWLDVAKRDWSDVMLQACDLSRDQMPALY---EGSEITGALLPEVAK 218
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right
handed coiled-coil, ATPase/SY ATP binding, membrane,
hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E
3j0j_J
Length = 187
Score = 26.8 bits (59), Expect = 3.3
Identities = 8/46 (17%), Positives = 17/46 (36%), Gaps = 4/46 (8%)
Query: 16 KKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKR 61
+ K E E EE+ + + E+ E + + ++ E
Sbjct: 23 EAKAEAVKRE----AEEKAKALLQARERALEAQYRAALRRAESAGE 64
Score = 26.4 bits (58), Expect = 5.2
Identities = 8/57 (14%), Positives = 21/57 (36%)
Query: 6 TTQVSKYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRR 62
+S+ + + ++ E + E EEK K + ++ E + + +
Sbjct: 4 EAILSQEVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAE 60
>1hk7_A Heat shock protein HSP82; ATPase, chaperone; 2.5A {Saccharomyces
cerevisiae} SCOP: d.14.1.8
Length = 288
Score = 27.2 bits (61), Expect = 3.5
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 28 GGEEEEEEEEKKKEEKKKEKKKKEEEKKKE 57
E EE +EEK + EK+ ++ + + KE
Sbjct: 255 DFELEETDEEKAEREKEIKEYEPLTKALKE 284
Score = 26.0 bits (58), Expect = 7.3
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 27 GGGEEEEEEEEKKKEEKKKEKK 48
EE +EE+ ++E++ KE +
Sbjct: 255 DFELEETDEEKAEREKEIKEYE 276
>3iz6_C 40S ribosomal protein S9 (S4P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 195
Score = 26.6 bits (58), Expect = 3.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 4 SSTTQVSKYKRRKKKKEEEDEEGGGGEEEEEEE 36
+S R K+K +++ GGG EEE+EE
Sbjct: 163 TSPFGGGPPGRVKRKNQKKASGGGGDGEEEDEE 195
Score = 25.8 bits (56), Expect = 8.1
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 15 RKKKKEEEDEEGGGGEEEEEEEE 37
R K+K ++ GGGG+ EEE+EE
Sbjct: 173 RVKRKNQKKASGGGGDGEEEDEE 195
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA
processing, artemis, V(D)J recombination, double-strand
break repair; 2.50A {Saccharomyces cerevisiae} SCOP:
d.157.1.10
Length = 717
Score = 27.1 bits (59), Expect = 4.1
Identities = 8/76 (10%), Positives = 17/76 (22%)
Query: 7 TQVSKYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRRTLTF 66
K + K + EEE+ + K K + F
Sbjct: 568 QNSRKRPLKDGAKTTSPVNEEDNKNEEEDGYNMSDPISKRSKHRASRYSGFSGTGEAENF 627
Query: 67 IRIGKPALKPRPTRCV 82
+ + ++
Sbjct: 628 DNLDYLKIDKTLSKRT 643
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 27.0 bits (60), Expect = 4.3
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 26 GGGGEE---EEEEEEKKKEEKKKEKKKKEEEKKKEGEKRRTLT 65
G +E + ++E KK+KK+ E KKK + TL
Sbjct: 461 PPGLQELIPFVKPAPIEQEPSKKQKKQHEGSKKKAAARDVTLE 503
>3u5c_H RP30, RP40, 40S ribosomal protein S7-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5g_H
Length = 190
Score = 26.6 bits (58), Expect = 4.4
Identities = 1/37 (2%), Positives = 9/37 (24%)
Query: 18 KKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEK 54
+ E+ + ++ + + +
Sbjct: 114 RSRTLTAVHDKILEDLVFPTEIVGKRVRYLVGGNKIQ 150
>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum,
manolate, transferase, structural genomi 2; HET: ADP
XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*
Length = 511
Score = 26.8 bits (60), Expect = 4.6
Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 7/50 (14%)
Query: 124 SGTVCLNVINQEW-TPLYDLSNIFETFLPQLLTYPNPTDP---LNGDAAA 169
S T + W L +P+LL P + ++ AA
Sbjct: 181 STTGLYRPKDDAWHVELLADYGFSLDLMPRLL---EPGEQVGGVSALAAR 227
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone
inhibitor binding, methylation, nucleosome core,
oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB:
2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Length = 482
Score = 26.8 bits (57), Expect = 4.7
Identities = 14/63 (22%), Positives = 23/63 (36%)
Query: 1 LQNSSTTQVSKYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEK 60
+ N S QV + +++ DE E E +EE +K K + K E+
Sbjct: 409 IGNKSVVQVKNFFVNYRRRFNIDEVLQEWEAEHGKEETNGPSNQKPVKSPDNSIKMPEEE 468
Query: 61 RRT 63
Sbjct: 469 DEA 471
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase,
nucleotide-binding, Pro serine protease, stress
response; HET: ADP; 3.40A {Bacillus subtilis} PDB:
1x37_A
Length = 543
Score = 26.7 bits (60), Expect = 5.1
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 29 GEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEK 60
G++E + E + +K E+ + K+ K
Sbjct: 1 GDKEGKTGEVQTLTEKIEEAGMPDHVKETALK 32
>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose,
transferase, structural genomics, PSI-2, protein
structure initiative; HET: ATP DXP XUL ADP; 2.00A
{Lactobacillus acidophilus} PDB: 3gbt_A*
Length = 504
Score = 26.8 bits (60), Expect = 5.1
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 124 SGTVCLNVINQEW-TPLYDLSNIFETFLPQL 153
+GT LN+ W L D+ I + LP++
Sbjct: 177 AGTGILNLKTLTWDQELLDILKIKKEQLPKI 207
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics,
NPPSFA, national project on P structural and functional
analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1
PDB: 2dma_A 4dt0_A
Length = 198
Score = 26.5 bits (58), Expect = 5.1
Identities = 7/47 (14%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 16 KKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRR 62
++K E E ++ E+ K++ + E K + ++ + +
Sbjct: 16 ERKIEYILNEA----RQQAEKIKEEARRNAEAKAEWIIRRAKTQAEL 58
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO,
heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens}
PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Length = 640
Score = 26.6 bits (58), Expect = 5.2
Identities = 11/49 (22%), Positives = 24/49 (48%)
Query: 16 KKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRRTL 64
+E++D +EE+ E+++ +K+K +EK+ KR +
Sbjct: 579 STAQEQDDVLIVDSDEEDSSNNADVSEEERSRKRKLDEKENLSAKRSRI 627
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle,
dimer, chaperone, STRE response; 3.23A {Thermus
thermophilus}
Length = 177
Score = 26.1 bits (58), Expect = 5.3
Identities = 7/40 (17%), Positives = 17/40 (42%)
Query: 16 KKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKK 55
+++ E E +E + ++ K E++ K + K
Sbjct: 2 EERNHENTLEKDLEAVGQEAQALEERLKAAEEELKGLKDK 41
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 26.6 bits (58), Expect = 5.5
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 1 LQNSSTTQVSKYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEK------KKEKKKKEEEK 54
LQ + + +++ +KKEEE + +E+E E K+ EK + KK ++EK
Sbjct: 320 LQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEK 379
Query: 55 KKEGEKRRTL 64
KK +K+++L
Sbjct: 380 KKLEDKKKSL 389
Score = 25.9 bits (56), Expect = 8.4
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 11 KYKRRK--KKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKK 56
Y+R K + ++ + +E E K+ E E +KKEEE ++
Sbjct: 297 LYRRCKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQ 344
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2
PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D*
2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D*
3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Length = 1524
Score = 26.7 bits (59), Expect = 5.5
Identities = 7/46 (15%), Positives = 13/46 (28%)
Query: 16 KKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKR 61
K EE + + + + + E KK+ R
Sbjct: 179 VKDGEEVVKGQELAPGVVSRLDGVALYRFPRRVRVEYVKKERAGLR 224
>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins
binding, carbohydrate binding, calcium binding,
endoplasmic reticulu; 2.57A {Mus musculus}
Length = 332
Score = 26.6 bits (58), Expect = 5.5
Identities = 10/40 (25%), Positives = 15/40 (37%)
Query: 22 EDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKR 61
DE E K EK+ + K+ EE++ K
Sbjct: 290 NDEAYAEEFGNETWGVTKAAEKQMKDKQDEEQRLKLEHHH 329
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z
3o58_V 3o5h_V 3u5e_W 3u5i_W 1s1i_S 2x7n_D
Length = 155
Score = 25.8 bits (56), Expect = 5.6
Identities = 7/51 (13%), Positives = 20/51 (39%)
Query: 12 YKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRR 62
+ + K +E+ + + E+ + + K K++ + +K R
Sbjct: 105 REEKLKANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQAKGAFQKVAATSR 155
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain,
beta-barrel, translational GTPase, D structural
genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Length = 483
Score = 26.4 bits (59), Expect = 5.7
Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 30 EEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRRTLTFIRIG 70
+E+ + K K KK + + L+F+ +G
Sbjct: 1 DEKTVQRYYKTTVPTKPKKPHDISAFVKSALPH-LSFVVLG 40
>2enk_A HUEL, solute carrier family 30 member 9; cation transporter,
cobalt, zinc, cadmium, protein of unknown function
DUF993, embryonic LUNG protein; NMR {Homo sapiens}
Length = 101
Score = 25.6 bits (56), Expect = 5.9
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 20 EEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKE 57
E + E G E E+K ++E + E +++ +K
Sbjct: 58 EAKSLEVWGSPEALAREKKLRKEAEIEYRERLFRNQKI 95
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_T 4a1c_T 4a1e_T
Length = 158
Score = 25.9 bits (56), Expect = 6.1
Identities = 10/51 (19%), Positives = 22/51 (43%)
Query: 13 KRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRRT 63
+R+ + E E ++++ EKK+ +K + + K +K T
Sbjct: 94 RRKNLDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAET 144
>2o8g_I IPP-2, protein phosphatase inhibitor 2; hydrolase-inhibitor comple;
2.50A {Mus musculus} PDB: 2o8a_I
Length = 206
Score = 25.9 bits (56), Expect = 6.5
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 13 KRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKK 56
K+ + E + +E EE+ +++EKK++ E K+K
Sbjct: 103 KKLAAAEGSEPKYRTREQESSGEEDNDLSPEEREKKRQFEMKRK 146
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP,
deubiquitinating enzyme, substrate recognition; 3.20A
{Homo sapiens}
Length = 522
Score = 26.5 bits (58), Expect = 6.5
Identities = 9/42 (21%), Positives = 19/42 (45%)
Query: 12 YKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEE 53
Y R K E ++ E ++E++ + +K+KE +
Sbjct: 480 YIRESKLSEVLQAVTDHDIPQQLVERLQEEKRIEAQKRKERQ 521
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics,
tubercidin, structu genomics, structural genomics
consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB:
4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A*
3qow_A* 3qox_A* 4er3_A* 3sr4_A*
Length = 438
Score = 26.3 bits (57), Expect = 6.7
Identities = 12/60 (20%), Positives = 23/60 (38%)
Query: 3 NSSTTQVSKYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRR 62
N++T + + + G E+ KK K KKK ++ +K ++R
Sbjct: 370 NAATPTKGPEGKVAGPADAPMDSGAEEEKAGAATVKKPSPSKARKKKLNKKGRKMAGRKR 429
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding
protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB:
1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D
3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D
3azj_D 3azk_D 3azl_D 3azm_D ...
Length = 126
Score = 25.5 bits (55), Expect = 6.7
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 34 EEEEKKKEEKKKEKKKKEEEKKKEGEKRR 62
E + KK KK + +KK +KR+
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRK 31
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 26.0 bits (58), Expect = 7.1
Identities = 6/51 (11%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 8 QVSKYKRRKKK-KEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKE 57
++ + ++ K + ++ E + E+ +++ E K+ K+++ ++
Sbjct: 402 KLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENS 452
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer
complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH
UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F*
1p84_F* 2ibz_H* 1kyo_F*
Length = 146
Score = 25.6 bits (55), Expect = 7.6
Identities = 12/59 (20%), Positives = 32/59 (54%)
Query: 2 QNSSTTQVSKYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEK 60
Q+ + K + E+EDE+ ++++++E++++EE+ ++ + E K E+
Sbjct: 31 QHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEEVTDQLEDLREHFKNTEE 89
>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus} PDB:
1s1i_M
Length = 178
Score = 25.5 bits (56), Expect = 8.1
Identities = 0/26 (0%), Positives = 0/26 (0%)
Query: 38 KKKEEKKKEKKKKEEEKKKEGEKRRT 63
Sbjct: 148 AAAAAAAAAAAAAAAAAAAAAAAAAA 173
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 3u5i_D 3izc_Q 3izs_Q
3o58_E 3o5h_E 3jyw_E 1s1i_E
Length = 297
Score = 25.8 bits (56), Expect = 8.5
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 34 EEEEKKKEEKKKEKKKKEEEKKKEGEKRRTL 64
+ K EKK K++ E KK + + +
Sbjct: 249 ADPAFKPTEKKFTKEQYAAESKKYRQTKLSK 279
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein,
acetylation, cytoplasm, phosphorylation, polymorphism;
2.15A {Homo sapiens}
Length = 253
Score = 25.8 bits (56), Expect = 8.7
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 4/41 (9%)
Query: 13 KRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEE 53
+ R E E + + EE +KE++ E+
Sbjct: 217 RMRGTISREHPWE----VMPDLYFYRDPEEIEKEEQAAAEK 253
>3pow_A Calreticulin; legume lectin fold, CNX/CRT family, multi-functional,
carboh binding, peptide binding, multi-compartmental,
chaperone; 1.55A {Homo sapiens} PDB: 3pos_A 3o0w_A*
3o0v_A* 3o0x_A*
Length = 265
Score = 25.9 bits (56), Expect = 8.7
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 22 EDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKK 56
DE E K EK+ + K+ EE++ K
Sbjct: 231 NDEAYAEEFGNETWGVTKAAEKQMKDKQDEEQRLK 265
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 25.9 bits (56), Expect = 9.1
Identities = 9/50 (18%), Positives = 27/50 (54%)
Query: 13 KRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRR 62
+ + K +E+ ++ E E + ++ ++ + + K+ EEK+++ E +
Sbjct: 340 QVFEMKVKEKVQKLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQFEDEK 389
>3iz5_V 60S ribosomal protein L17 (L22P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_V
Length = 171
Score = 24.9 bits (54), Expect = 9.5
Identities = 3/28 (10%), Positives = 7/28 (25%)
Query: 26 GGGGEEEEEEEEKKKEEKKKEKKKKEEE 53
G + + + K + E
Sbjct: 78 SNGQGRWPAKSARFILDLLKNAESNAEV 105
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_C 4a1c_C 4a1e_C
Length = 410
Score = 25.9 bits (56), Expect = 9.8
Identities = 9/67 (13%), Positives = 17/67 (25%), Gaps = 6/67 (8%)
Query: 11 KYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRRTLTFIRIG 70
K + KK E + + + K + K KK + K +
Sbjct: 339 IVKEQAKKAAEA------SKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKAR 392
Query: 71 KPALKPR 77
+
Sbjct: 393 QEDADFI 399
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.307 0.130 0.369
Gapped
Lambda K H
0.267 0.0364 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,740,386
Number of extensions: 162662
Number of successful extensions: 2455
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1778
Number of HSP's successfully gapped: 678
Length of query: 180
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 92
Effective length of database: 4,244,745
Effective search space: 390516540
Effective search space used: 390516540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 54 (25.6 bits)