RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7478
(180 letters)
>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC
{Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId:
6239]}
Length = 149
Score = 55.9 bits (134), Expect = 5e-11
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 104 QGVPPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPL 163
PP V S H + G++CL+++ W+P YD++ I T + LL PNP P
Sbjct: 63 PNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAIL-TSIQSLLDEPNPNSPA 121
Query: 164 NGDAAAMYLDKPDKYKE 180
N AA +Y + +Y++
Sbjct: 122 NSLAAQLYQENRREYEK 138
>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721,
E2 domain {Toxoplasma gondii [TaxId: 5811]}
Length = 161
Score = 54.4 bits (130), Expect = 2e-10
Identities = 17/87 (19%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 94 VQIPLHRVHEQGVPPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQL 153
+ I + + P + + I++ + +G +CL+++ EW+P + + +
Sbjct: 65 LDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTAL-LSIQAM 123
Query: 154 LTYPNPTDPLNGDAAAMYLDKPDKYKE 180
L P PTDP + + A M ++ + +
Sbjct: 124 LADPVPTDPQDAEVAKMMIENHPLFVQ 150
>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}
Length = 149
Score = 53.3 bits (127), Expect = 5e-10
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Query: 107 PPVVYPPSIYNHQSTLYSGTV-CLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNG 165
PP + + H + CL+++ W+P+ L + L LL P P DP +
Sbjct: 65 PPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSAL-ISLQALLQSPEPNDPQDA 123
Query: 166 DAAAMYLDKPDKYKE 180
+ A YL + + +
Sbjct: 124 EVAQHYLRDRESFNK 138
>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}
Length = 152
Score = 53.2 bits (127), Expect = 5e-10
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
P V + H + G +CL+V+ W+P + + + LL PNP DPL D
Sbjct: 66 APKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVL-LSIQALLASPNPNDPLAND 124
Query: 167 AAAMYLDKPDKYKE 180
A ++ K
Sbjct: 125 VAEDWIKNEQGAKA 138
>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch8 [TaxId: 9606]}
Length = 148
Score = 52.5 bits (125), Expect = 8e-10
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 102 HEQGVPPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTD 161
PP V + H + G +CL+++ W+P +S + + LLT NP D
Sbjct: 60 DYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSIC-SLLTDCNPAD 118
Query: 162 PLNGDAAAMYLDKPDKYKE 180
PL G A Y+ ++
Sbjct: 119 PLVGSIATQYMTNRAEHDR 137
>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa,
E2 domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 154
Score = 52.5 bits (125), Expect = 8e-10
Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 94 VQIPLHRVHEQGVPPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQL 153
++I + + P V + I++ + +G +CL+++ +W L + L L
Sbjct: 58 LEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVL-LSLQAL 116
Query: 154 LTYPNPTDPLNGDAAAMYLDKPDKYKE 180
L P DP + A Y P+ +K+
Sbjct: 117 LAAAEPDDPQDAVVANQYKQNPEMFKQ 143
>d2z5da1 d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 H [TaxId: 9606]}
Length = 152
Score = 52.0 bits (124), Expect = 1e-09
Identities = 44/90 (48%), Positives = 58/90 (64%), Gaps = 4/90 (4%)
Query: 92 LSVQIPLHRVHEQGVPPVVYPPSIYNHQSTLYSGTVC-LNVINQEWTPLYDLSNIFETFL 150
+ V +P + P + + H + + L+VINQ WT LYDL+NIFE+FL
Sbjct: 50 VRVDLPDKYPFK---SPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFL 106
Query: 151 PQLLTYPNPTDPLNGDAAAMYLDKPDKYKE 180
PQLL YPNP DPLNGDAAAMYL +P++YK+
Sbjct: 107 PQLLAYPNPIDPLNGDAAAMYLHRPEEYKQ 136
>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch7 [TaxId: 9606]}
Length = 144
Score = 50.9 bits (121), Expect = 3e-09
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
Query: 102 HEQGVPPVVYPPSIYNHQSTLYSGTVCLNVIN-QEWTPLYDLSNIFETFLPQLLTYPNPT 160
PP + + H + G VCL VI+ + W P + ++ + L+ P P
Sbjct: 57 EYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLI-ALVNDPQPE 115
Query: 161 DPLNGDAAAMYLDKPDKYKE 180
PL D A Y K+ +
Sbjct: 116 HPLRADLAEEYSKDRKKFCK 135
>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId:
4932]}
Length = 153
Score = 50.9 bits (121), Expect = 3e-09
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 104 QGVPPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPL 163
PP V S H + +G +CL+++ WTP YD+++I T + L PNP P
Sbjct: 63 PNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASIL-TSIQSLFNDPNPASPA 121
Query: 164 NGDAAAMYLDKPDKYKE 180
N +AA ++ D +Y +
Sbjct: 122 NVEAATLFKDHKSQYVK 138
>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode
(Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}
Length = 161
Score = 51.3 bits (122), Expect = 3e-09
Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 14/90 (15%)
Query: 104 QGVPPVVYPPSIYNHQSTLYSGTVCLNVINQE-------------WTPLYDLSNIFETFL 150
PP + S H + G VC+++++ W P++ + I + +
Sbjct: 61 PQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVI 120
Query: 151 PQLLTYPNPTDPLNGDAAAMYLDKPDKYKE 180
+LT PN P N DAA M + ++K+
Sbjct: 121 -SMLTDPNFESPANVDAAKMQRENYAEFKK 149
>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC
{Human(Homo sapiens), E2 S [TaxId: 9606]}
Length = 151
Score = 50.9 bits (121), Expect = 3e-09
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
PP Y + H + +G +C+NV+ ++WT + ++ + LL +PNP LN +
Sbjct: 69 PPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVL-LTIKCLLIHPNPESALNEE 127
Query: 167 AAAMYLDKPDKYKE 180
A + L+ ++Y
Sbjct: 128 AGRLLLENYEEYAA 141
>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 M [TaxId: 9606]}
Length = 157
Score = 50.8 bits (121), Expect = 5e-09
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 104 QGVPPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPL 163
PP V ++ H + G VCLN++ ++W P+ +++I L L PNP DPL
Sbjct: 61 PHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSII-YGLQYLFLEPNPEDPL 119
Query: 164 NGDAAAMYLDKPDKYKE 180
N +AA + + +++
Sbjct: 120 NKEAAEVLQNNRRLFEQ 136
>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubc13 [TaxId: 9606]}
Length = 149
Score = 50.2 bits (119), Expect = 7e-09
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
P V + H + G +CL+++ +W+P + + + LL+ PNP DPL D
Sbjct: 65 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQ-ALLSAPNPDDPLAND 123
Query: 167 AAAMYLDKPDKYKE 180
A + + E
Sbjct: 124 VAEQWKTNEAQAIE 137
>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}
Length = 164
Score = 49.4 bits (117), Expect = 1e-08
Identities = 15/87 (17%), Positives = 35/87 (40%), Gaps = 14/87 (16%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEW-------------TPLYDLSNIFETFLPQL 153
PP + H + +G VC+++++ +P+ + I + + +
Sbjct: 67 PPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVM-SM 125
Query: 154 LTYPNPTDPLNGDAAAMYLDKPDKYKE 180
L+ PN N DA ++ D +++
Sbjct: 126 LSEPNIESGANIDACILWRDNRPEFER 152
>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam
(Spisula solidissima), E-2C [TaxId: 6584]}
Length = 156
Score = 48.6 bits (115), Expect = 3e-08
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
PPVV + H + SG +CL+++ + WT YD+ I + LL PN PLN
Sbjct: 72 PPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQ-SLLGEPNNASPLNAQ 130
Query: 167 AAAMYLDKPDKYK 179
AA M+ ++ + K
Sbjct: 131 AADMWSNQTEYKK 143
>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC
{Caenorhabditis elegans, E2 2 [TaxId: 6239]}
Length = 147
Score = 48.2 bits (114), Expect = 3e-08
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
PP V + H + +G++CL+++ +W+P +S + + LL PNP DPL +
Sbjct: 64 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSIC-SLLCDPNPDDPLVPE 122
Query: 167 AAAMYLDKPDKYKE 180
A +Y ++Y +
Sbjct: 123 IARIYKTDRERYNQ 136
>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch10 [TaxId: 9606]}
Length = 146
Score = 47.8 bits (113), Expect = 4e-08
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGD 166
P V + H + G + L+++ ++W+ LYD+ I + LL PN PLN
Sbjct: 64 APTVKFLTPCYHPNVDTQGNISLDILKEKWSALYDVRTILLSIQ-SLLGEPNIDSPLNTH 122
Query: 167 AAAMYLDKPDKYKE 180
AA ++ + P +K+
Sbjct: 123 AAELWKN-PTAFKK 135
>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC
{Leishmania major [TaxId: 5664]}
Length = 158
Score = 45.9 bits (108), Expect = 2e-07
Identities = 38/89 (42%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 92 LSVQIPLHRVHEQGVPPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLP 151
L VQ+P + + + I + SG+VCL+VINQ WTP+Y L NIF+ FLP
Sbjct: 47 LHVQLPSDYPFKSPS--IGFCNRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLP 104
Query: 152 QLLTYPNPTDPLNGDAAAMYLDKPDKYKE 180
QLL YPNP+DPLN AA + +
Sbjct: 105 QLLRYPNPSDPLNVQAAHLLHADRVGFDA 133
>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 L6 [TaxId: 9606]}
Length = 150
Score = 45.5 bits (107), Expect = 3e-07
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWT-PLYDLSNIFETFLPQLLTYPNPTDPLNG 165
PP++ + H + +G +CL +I+ E P + E L+ PN +PL
Sbjct: 63 PPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALN-VLVNRPNIREPLRM 121
Query: 166 DAAAMYLDKPDKYKE 180
D A + P+ +++
Sbjct: 122 DLADLLTQNPELFRK 136
>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 U [TaxId: 9606]}
Length = 148
Score = 45.5 bits (107), Expect = 3e-07
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 134 QEWTPLYDLSNIFETFLPQLLTYPNPTDPLNGDAAAMYLDKPDKYKE 180
++W Y LS+I +L+ P +P+N +AA + + Y+
Sbjct: 97 EKWNTNYTLSSILLALQ-VMLSNPVLENPVNLEAARILVKDESLYRT 142
>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubc9 [TaxId: 9606]}
Length = 156
Score = 42.8 bits (100), Expect = 3e-06
Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 2/89 (2%)
Query: 92 LSVQIPLHRVHEQGVPPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLP 151
L + P N + L +++W P + I +
Sbjct: 58 LRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSILE-EDKDWRPAITIKQIL-LGIQ 115
Query: 152 QLLTYPNPTDPLNGDAAAMYLDKPDKYKE 180
+LL PN DP +A +Y +Y++
Sbjct: 116 ELLNEPNIQDPAQAEAYTIYCQNRVEYEK 144
>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}
Length = 139
Score = 40.0 bits (93), Expect = 3e-05
Identities = 12/80 (15%), Positives = 28/80 (35%), Gaps = 3/80 (3%)
Query: 94 VQIPLHRVHEQGVPPVVYPPSIYNHQSTLYSGTVCLNVIN--QEWTPLYDLSNIFETFLP 151
++I + + P V + I + +G V I+ +W Y + + +
Sbjct: 60 LKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRR 119
Query: 152 QLLTYPNPTDPLNGDAAAMY 171
+++ N P + Y
Sbjct: 120 LMMSKENMKLPQPPE-GQCY 138
>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 T [TaxId: 9606]}
Length = 154
Score = 39.8 bits (92), Expect = 4e-05
Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 104 QGVPPVVYPPSIYNHQSTLYSGTVCLNVINQE----WTPLYDLSNIFETFLPQLLTYPNP 159
PP + + H + +G +CL+V+ W P +++ T + L++ PNP
Sbjct: 62 PFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIAT-VLTSIQLLMSEPNP 120
Query: 160 TDPLNGDAAAMYLDKPDKYKE 180
DPL D ++ + + +
Sbjct: 121 DDPLMADISSEFKYNKPAFLK 141
>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 34.6 bits (79), Expect = 0.001
Identities = 10/51 (19%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 107 PPVVY--PPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLT 155
P V +I H +G +CL+++ ++W+P + ++ + + +L+
Sbjct: 68 SPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSII-SMLS 117
>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme,
E2 domain {Plasmodium chabaudi [TaxId: 5825]}
Length = 109
Score = 33.9 bits (77), Expect = 0.002
Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 104 QGVPPVVYPPSIYNHQSTLYS-GTVCLNVINQEWTPLYDLSNIFETFLPQLLT 155
PP+VY + +YS G +CL+++ ++ P +S + + + +L+
Sbjct: 58 PLKPPIVYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLSISGLVLSII-SMLS 109
>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 141
Score = 33.8 bits (77), Expect = 0.004
Identities = 15/120 (12%), Positives = 36/120 (30%), Gaps = 22/120 (18%)
Query: 61 RRTLTFIRIGKPALKPRPTRCVEGEGAPTRTLSVQIPLHRVHEQGV-------------- 106
R + LKP V +G+ +++ + +
Sbjct: 20 VRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYP 79
Query: 107 --PPVVY-----PPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTYPNP 159
PP+ + +I + +G + L +++ P DL + + + + P
Sbjct: 80 YNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMI-VVFGDEPP 138
>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 152
Score = 32.7 bits (74), Expect = 0.009
Identities = 8/63 (12%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Query: 97 PLHRVHEQGVPPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLPQLLTY 156
P ++ + S+ + +G + L +++ +L + + + LL
Sbjct: 89 PFISINLENFDMNTISSSLPIQEYIDSNGWIALPILHCWDPAAMNLIMVVQELM-SLLHE 147
Query: 157 PNP 159
P
Sbjct: 148 PPQ 150
>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 G1 [TaxId: 9606]}
Length = 125
Score = 31.6 bits (71), Expect = 0.020
Identities = 10/45 (22%), Positives = 21/45 (46%)
Query: 107 PPVVYPPSIYNHQSTLYSGTVCLNVINQEWTPLYDLSNIFETFLP 151
PP + + H + +G VC++++++ Y E +LP
Sbjct: 63 PPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLP 107
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 31.5 bits (71), Expect = 0.050
Identities = 8/27 (29%), Positives = 19/27 (70%)
Query: 34 EEEEKKKEEKKKEKKKKEEEKKKEGEK 60
+E +K++E ++K ++ K ++K E E+
Sbjct: 305 KENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 28.8 bits (64), Expect = 0.39
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 32 EEEEEEKKKEEKKKEKKKKEEEKKKE 57
+E ++ ++ EEK + K +E+ +KE
Sbjct: 305 KENQKRRETEEKMRRAKLAKEKAEKE 330
Score = 27.6 bits (61), Expect = 0.74
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 30 EEEEEEEEKKKEEKKKEKKKKEEEK 54
++ E E+K K K+K E+E+
Sbjct: 307 NQKRRETEEKMRRAKLAKEKAEKER 331
Score = 27.2 bits (60), Expect = 1.0
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 30 EEEEEEEEKKKEEKKKEKKKKEEEKK 55
E ++ E ++K + K K+K E+++
Sbjct: 306 ENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 26.1 bits (57), Expect = 2.9
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 36 EEKKKEEKKKEKKKKEEEKKKEGEKRR 62
+E +K + +EK ++ + K++ EK R
Sbjct: 305 KENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 25.3 bits (55), Expect = 4.6
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 38 KKKEEKKKEKKKKEEEKKKEGEKRR 62
K+ +K++E ++K K EK
Sbjct: 304 VKENQKRRETEEKMRRAKLAKEKAE 328
Score = 24.9 bits (54), Expect = 5.8
Identities = 6/26 (23%), Positives = 17/26 (65%)
Query: 31 EEEEEEEKKKEEKKKEKKKKEEEKKK 56
+E ++ + +E+ ++ K KE+ +K+
Sbjct: 305 KENQKRRETEEKMRRAKLAKEKAEKE 330
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 30.8 bits (70), Expect = 0.064
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 30 EEEEEEEEKKKEEKKKEKKKKEEEKKKEG 58
+ E ++ KEEK K K++ E+ K+ G
Sbjct: 111 AQTEARKQMSKEEKLKIKEENEKLLKEYG 139
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 30.4 bits (69), Expect = 0.083
Identities = 5/29 (17%), Positives = 19/29 (65%)
Query: 30 EEEEEEEEKKKEEKKKEKKKKEEEKKKEG 58
++E++++ +EKK+ + ++E+ ++
Sbjct: 103 LQKEQKKQLTSQEKKQIRLEREKFEEDYK 131
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 28.1 bits (62), Expect = 0.63
Identities = 7/53 (13%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 12 YKRRKK----KKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEK 60
+++R + +++ + E+ G+E E + + +E+K + + ++++ +
Sbjct: 63 WEQRSRIISGQEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVKG 115
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 27.8 bits (61), Expect = 0.66
Identities = 10/52 (19%), Positives = 24/52 (46%)
Query: 13 KRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRRTL 64
++ +K E D E+E K +E+++ K+ ++E + + + L
Sbjct: 245 LKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDL 296
Score = 25.9 bits (56), Expect = 2.8
Identities = 8/62 (12%), Positives = 27/62 (43%)
Query: 1 LQNSSTTQVSKYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEK 60
L +++++ +E ++ E + + K++E+ K +E+E+ +
Sbjct: 223 LHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGF 282
Query: 61 RR 62
++
Sbjct: 283 QK 284
Score = 25.5 bits (55), Expect = 3.6
Identities = 6/52 (11%), Positives = 21/52 (40%)
Query: 11 KYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRR 62
K + + + ++ E +E K+ EK + + + ++++ +
Sbjct: 219 SAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALK 270
Score = 25.1 bits (54), Expect = 6.0
Identities = 8/45 (17%), Positives = 20/45 (44%)
Query: 13 KRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKE 57
R + +E++ +E+E+ K+ +K+ K E + +
Sbjct: 254 NDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQT 298
Score = 24.7 bits (53), Expect = 6.6
Identities = 10/52 (19%), Positives = 18/52 (34%)
Query: 11 KYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRR 62
+ + D+ E+E E E K E + K E ++K +
Sbjct: 184 SKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMME 235
>d1jk0a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's yeast
(Saccharomyces cerevisiae), Y2 [TaxId: 4932]}
Length = 334
Score = 27.8 bits (61), Expect = 0.83
Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 5/57 (8%)
Query: 31 EEEEEEEKKKEEKKKEKKKKEEEKKKEGEK-----RRTLTFIRIGKPALKPRPTRCV 82
E EE + K + KEK K+ E K K R L + +P L R V
Sbjct: 6 ETLREENRVKSDMLKEKLSKDAENHKAYLKSHQVHRHKLKEMEKEEPLLNEDKERTV 62
>d1jmma_ b.30.6.1 (A:) V-region of surface antigen I/II (SA I/II,
PAC) {Streptococcus mutans [TaxId: 1309]}
Length = 377
Score = 27.3 bits (60), Expect = 1.1
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 3/65 (4%)
Query: 7 TQVSKYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRRTLTF 66
++ Y + K E+E + E EK K E + + + E L+
Sbjct: 2 KDLADYPVKLKAYEDEQASI---KAALAELEKHKNEDGNLTEPSAQNLVYDLEPNANLSL 58
Query: 67 IRIGK 71
GK
Sbjct: 59 TTDGK 63
>d2crua1 a.5.6.1 (A:8-112) Programmed cell death protein 5 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 105
Score = 26.2 bits (58), Expect = 1.2
Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 15 RKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRRTLTFIRIGKP 72
R+++ E + G + ++E K +E E + + + R L+ + + KP
Sbjct: 2 RRQRLAELQAKHGDPGDAAQQEAKHREA---EMRNSILAQVLDQSARARLSNLALVKP 56
>d1xu6a_ g.16.3.1 (A:) Variant surface glycoprotein MITAT 1.2, VSG
221, C-terminal domain {Trypanosoma brucei brucei
[TaxId: 5702]}
Length = 80
Score = 25.7 bits (56), Expect = 1.4
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 18 KKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRRTLT 65
K++++E + + E KK K+E KK +E K+G+ T T
Sbjct: 29 NKKDQNECKSPCKWHNDAENKKCTLDKEEAKKVADETAKDGKTGNTNT 76
>d1u8xx2 d.162.1.2 (X:170-445) Maltose-6'-phosphate glucosidase GlvA
{Bacillus subtilis [TaxId: 1423]}
Length = 276
Score = 26.4 bits (58), Expect = 1.7
Identities = 5/51 (9%), Positives = 11/51 (21%)
Query: 11 KYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKR 61
K+ E E E + +++ E +
Sbjct: 100 YLFPDDMVKKSNPNHTRANEVMEGREAFIFSQCDMITREQSSENSEIKIDD 150
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal
fragment {Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 26.7 bits (58), Expect = 2.0
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 33 EEEEEKKKEEKKKEKKKKEEEKKKEGEKRRT----LTFIRI 69
E E ++ +E + K + +K +G ++ L FI +
Sbjct: 19 EAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFL 59
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 26.0 bits (57), Expect = 2.0
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 13 KRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKR 61
K KE+ ++ +E E E+ +EK K EE +K E +
Sbjct: 89 NFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELK 137
Score = 24.1 bits (52), Expect = 7.2
Identities = 5/52 (9%), Positives = 21/52 (40%)
Query: 11 KYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRR 62
+ +K EE+ +E+ ++ + ++ +E ++ + + +
Sbjct: 75 HEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKH 126
Score = 24.1 bits (52), Expect = 7.3
Identities = 10/53 (18%), Positives = 23/53 (43%)
Query: 8 QVSKYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEK 60
+ + + + K+K + E E + ++K+K +E K KE ++
Sbjct: 86 ENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKE 138
Score = 24.1 bits (52), Expect = 7.9
Identities = 8/49 (16%), Positives = 21/49 (42%)
Query: 14 RRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRR 62
+K EE + +E+ ++ + +E ++ E+ +E +K
Sbjct: 79 VIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHA 127
Score = 24.1 bits (52), Expect = 8.0
Identities = 7/55 (12%), Positives = 21/55 (38%)
Query: 8 QVSKYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRR 62
+ K + +E + E +E ++ ++ +E++K E ++
Sbjct: 79 VIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKN 133
Score = 24.1 bits (52), Expect = 8.5
Identities = 11/50 (22%), Positives = 23/50 (46%)
Query: 13 KRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRR 62
+RR EE ++ EE + +E + + EK++ E E ++ +
Sbjct: 38 RRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEEN 87
>d1qkla_ a.143.1.2 (A:) RPB6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 127
Score = 25.2 bits (55), Expect = 2.9
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 20 EEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKK 56
EEDE E EEE ++ E ++ + +K+
Sbjct: 16 VEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRI 52
Score = 24.8 bits (54), Expect = 4.8
Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 20 EEEDEEGGGGEEEEEEEEKKKEEKKKE------KKKKEEEKKKEGEKRRTLTFI 67
E++ +G ++ EE+E E +E + E+ + +KR T ++
Sbjct: 4 NEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYM 57
>d1ofcx3 a.187.1.1 (X:697-798) HAND domain of the nucleosome
remodeling ATPase ISWI {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 102
Score = 25.2 bits (55), Expect = 3.0
Identities = 10/50 (20%), Positives = 23/50 (46%), Gaps = 8/50 (16%)
Query: 12 YKRRKKKKEEEDEEGGGGEEEEEEEEKKK--------EEKKKEKKKKEEE 53
+++ K ++ E G + + EE++K EE+ +EK+ +
Sbjct: 50 FRKTVGYKVPKNTELGSDATKVQREEQRKIDEAEPLTEEEIQEKENLLSQ 99
>d3bn0a1 d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex aeolicus
[TaxId: 63363]}
Length = 101
Score = 24.8 bits (54), Expect = 3.7
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 34 EEEEKKKEEKKKEKKKKEEEKKK 56
+E + E K+ EK++
Sbjct: 79 KEVVPEGYEMKRVGDYYVFEKRE 101
>d1zhxa1 d.338.1.1 (A:2-434) Oxysterol-binding protein homolog 4,
KES1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 433
Score = 25.0 bits (54), Expect = 5.6
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 29 GEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRR 62
G+ + K + E+ + + +KEEE K +RR
Sbjct: 326 GDFNLIAKTKTELEETQRELRKEEEAKGISWQRR 359
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 25.0 bits (54), Expect = 5.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 34 EEEEKKKEEKKKEKKKKEEEKKKE 57
EE +K + EK+K+E EKKK+
Sbjct: 220 NPEEIEKYVAEIEKEKEENEKKKQ 243
>d1zroa2 a.264.1.1 (A:283-596) Erythrocyte binding antigen region II
{Plasmodium falciparum [TaxId: 5833]}
Length = 314
Score = 25.0 bits (54), Expect = 6.2
Identities = 8/54 (14%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 8 QVSKYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEE-KKKEKKKKEEEKKKEGEK 60
Q +Y+ +K + + E +K E+ + + +E+ K
Sbjct: 257 QAKQYQEYQKGNNYKMYSEFKSIKPEVYLKKYSEKCSNLNFEDEFKEELHSDYK 310
>d1l4sa_ d.204.1.1 (A:) Ribosome binding protein Y (YfiA homologue)
{Escherichia coli [TaxId: 562]}
Length = 112
Score = 24.1 bits (52), Expect = 6.4
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 8 QVSKYKRRKKKKEEEDEEGGGGEEEEEEEE 37
Q++K + + + + EE EEE
Sbjct: 83 QLNKLQHKGEARRAATSVKDANFVEEVEEE 112
>d1xr7a_ e.8.1.4 (A:) Viral RNA polymerase {Human rhinovirus 16,
HRV-16 [TaxId: 31708]}
Length = 460
Score = 24.9 bits (54), Expect = 6.8
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 6/54 (11%)
Query: 37 EKKKEEKKKEKKKKEEEKKKEGEKRRTLTFIRIGKPALKPR------PTRCVEG 84
KKK+ + K + K + L I K L+ + TR +E
Sbjct: 125 IKKKDLINNKTKDISKLKLALDKYGVDLPMITFLKDELRKKDKIAAGKTRVIEA 178
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 268
Score = 24.6 bits (53), Expect = 7.2
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 30 EEEEEEEEKKKEEKKKEKKKKEEEKKKE 57
+EE EEK EK K +E+ +
Sbjct: 217 ATQEEVEEKNILEKVKAAMTEEDLAELA 244
Score = 24.6 bits (53), Expect = 7.7
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 29 GEEEEEEEEKKKEEKKKEKKKKEEEKKK 56
+ +EE E+K +K + EE+ +
Sbjct: 215 EKATQEEVEEKNILEKVKAAMTEEDLAE 242
>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB)
{Escherichia coli [TaxId: 562]}
Length = 207
Score = 24.3 bits (52), Expect = 8.3
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 29 GEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKRRTLTFIRIGK 71
G+ E+E EE + E K + +GE R L I+ K
Sbjct: 166 GQMPEDEIALLPEEYQVESVVKLQVPALDGE--RHLVVIKANK 206
>d1f3ub_ b.65.1.1 (B:) TFIIF alpha subunit, Rap74 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 149
Score = 24.0 bits (52), Expect = 9.1
Identities = 13/59 (22%), Positives = 23/59 (38%)
Query: 3 NSSTTQVSKYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEEKKKEGEKR 61
N +T ++ +R K+ EE E +K E+ + KK K+ E +
Sbjct: 34 NFATWNQARLERDLSNKKIYQEEEMPESGAGSEFNRKLREEARRKKYGIVLKEFRPEDQ 92
>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 23.7 bits (51), Expect = 9.8
Identities = 7/45 (15%), Positives = 20/45 (44%)
Query: 9 VSKYKRRKKKKEEEDEEGGGGEEEEEEEEKKKEEKKKEKKKKEEE 53
+ + K K+ + EEE ++++E + ++++ E
Sbjct: 83 LQECKTVALKRRKASSRLENLGIPEEELLRQQQELFAKARQQQAE 127
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 24.4 bits (52), Expect = 9.8
Identities = 9/52 (17%), Positives = 20/52 (38%), Gaps = 20/52 (38%)
Query: 30 EEEEEEEEKKKEEKKKE--------------------KKKKEEEKKKEGEKR 61
+E ++ K+K+EK+ E + +E +++ E R
Sbjct: 708 KERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQRDAEAR 759
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.307 0.130 0.369
Gapped
Lambda K H
0.267 0.0614 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 687,641
Number of extensions: 34329
Number of successful extensions: 482
Number of sequences better than 10.0: 1
Number of HSP's gapped: 352
Number of HSP's successfully gapped: 162
Length of query: 180
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 100
Effective length of database: 1,309,196
Effective search space: 130919600
Effective search space used: 130919600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 50 (23.3 bits)