Query psy7479
Match_columns 170
No_of_seqs 210 out of 1279
Neff 9.2
Searched_HMMs 29240
Date Fri Aug 16 19:22:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7479.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7479hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xjy_A Rhombotin-2; oncoprotei 100.0 3.1E-34 1.1E-38 197.8 9.3 127 17-143 2-128 (131)
2 2xqn_T Testin, TESS; metal-bin 100.0 4.2E-33 1.4E-37 190.9 8.6 122 16-142 2-125 (126)
3 1rut_X Flinc4, fusion protein 100.0 7.9E-33 2.7E-37 201.7 5.9 131 15-145 3-133 (188)
4 2rgt_A Fusion of LIM/homeobox 100.0 2.7E-32 9.3E-37 195.7 7.5 125 15-144 4-129 (169)
5 2jtn_A LIM domain-binding prot 100.0 2.4E-31 8.3E-36 192.9 9.4 123 14-141 57-180 (182)
6 1b8t_A Protein (CRP1); LIM dom 100.0 1.9E-30 6.6E-35 189.6 8.9 133 13-151 3-181 (192)
7 2cup_A Skeletal muscle LIM-pro 99.9 6.5E-28 2.2E-32 159.0 6.8 98 15-116 3-101 (101)
8 1m3v_A FLIN4, fusion of the LI 99.9 1.9E-25 6.4E-30 152.0 0.3 113 15-143 3-115 (122)
9 1j2o_A FLIN2, fusion of rhombo 99.9 3.2E-23 1.1E-27 139.3 0.9 105 16-142 2-106 (114)
10 2ehe_A Four and A half LIM dom 99.8 1.9E-21 6.6E-26 123.2 3.6 75 65-142 1-75 (82)
11 1x63_A Skeletal muscle LIM-pro 99.8 8.9E-21 3.1E-25 120.0 6.6 76 65-143 1-76 (82)
12 2egq_A FHL1 protein; LIM domai 99.8 7.2E-21 2.5E-25 119.1 5.2 73 65-140 1-76 (77)
13 2cuq_A Four and A half LIM dom 99.8 1.4E-20 4.9E-25 118.5 6.2 74 65-143 1-74 (80)
14 1x3h_A Leupaxin; paxillin fami 99.8 3E-20 1E-24 117.1 5.5 73 65-142 1-73 (80)
15 1x6a_A LIMK-2, LIM domain kina 99.8 5.5E-20 1.9E-24 116.1 5.0 74 66-143 2-76 (81)
16 2dlo_A Thyroid receptor-intera 99.8 1.6E-19 5.6E-24 114.0 5.7 72 65-142 2-74 (81)
17 2dj7_A Actin-binding LIM prote 99.7 2.5E-18 8.4E-23 108.3 5.1 70 12-86 10-79 (80)
18 1iml_A CRIP, cysteine rich int 99.7 2.4E-18 8.1E-23 107.3 4.2 71 18-92 1-72 (76)
19 1v6g_A Actin binding LIM prote 99.7 3E-18 1E-22 108.1 4.2 72 66-141 2-73 (81)
20 1a7i_A QCRP2 (LIM1); LIM domai 99.7 2.9E-18 1E-22 108.1 2.2 74 14-91 4-77 (81)
21 1x68_A FHL5 protein; four-and- 99.7 1.8E-17 6.2E-22 103.3 5.2 69 16-88 4-75 (76)
22 1x64_A Alpha-actinin-2 associa 99.7 2.3E-17 7.7E-22 105.9 5.1 68 13-85 21-88 (89)
23 2co8_A NEDD9 interacting prote 99.7 2.7E-17 9.2E-22 104.0 5.1 73 6-80 4-78 (82)
24 2dar_A PDZ and LIM domain prot 99.7 2.1E-17 7.2E-22 106.2 4.3 68 13-85 21-88 (90)
25 2cu8_A Cysteine-rich protein 2 99.7 2.5E-17 8.7E-22 102.6 4.4 68 15-86 7-75 (76)
26 1x4k_A Skeletal muscle LIM-pro 99.7 7.9E-17 2.7E-21 99.2 6.3 63 77-142 3-65 (72)
27 2cur_A Skeletal muscle LIM-pro 99.7 2.2E-17 7.4E-22 101.0 3.7 67 15-86 3-69 (69)
28 1x62_A C-terminal LIM domain p 99.7 1.2E-17 4E-22 104.9 2.5 65 13-80 11-75 (79)
29 1wyh_A SLIM 2, skeletal muscle 99.7 1.4E-16 4.7E-21 98.1 6.3 64 76-142 2-65 (72)
30 2d8z_A Four and A half LIM dom 99.7 4.3E-17 1.5E-21 99.9 3.7 66 15-85 3-68 (70)
31 1x4l_A Skeletal muscle LIM-pro 99.7 5.5E-17 1.9E-21 100.0 4.0 64 15-80 3-69 (72)
32 2l4z_A DNA endonuclease RBBP8, 99.7 4.6E-17 1.6E-21 110.4 3.8 66 14-79 58-123 (123)
33 2d8y_A Eplin protein; LIM doma 99.7 6.3E-17 2.2E-21 104.2 4.2 70 14-87 12-81 (91)
34 1wig_A KIAA1808 protein; LIM d 99.6 8.2E-17 2.8E-21 99.5 4.2 64 77-144 3-66 (73)
35 1x4k_A Skeletal muscle LIM-pro 99.6 7.8E-17 2.7E-21 99.2 4.1 66 16-85 4-70 (72)
36 1wyh_A SLIM 2, skeletal muscle 99.6 7.3E-17 2.5E-21 99.4 3.8 66 16-85 4-70 (72)
37 3f6q_B LIM and senescent cell 99.6 1.3E-16 4.5E-21 98.1 4.9 64 76-142 8-71 (72)
38 1x61_A Thyroid receptor intera 99.6 1.7E-16 5.7E-21 97.8 5.3 60 83-143 7-66 (72)
39 1g47_A Pinch protein; LIM doma 99.6 5.6E-17 1.9E-21 101.2 3.0 68 14-85 8-76 (77)
40 1x68_A FHL5 protein; four-and- 99.6 7.5E-17 2.6E-21 100.4 3.5 64 76-142 2-67 (76)
41 1nyp_A Pinch protein; LIM doma 99.6 1.6E-16 5.5E-21 96.2 4.5 61 77-142 3-63 (66)
42 2ehe_A Four and A half LIM dom 99.6 1.9E-16 6.4E-21 100.0 4.4 67 16-86 14-81 (82)
43 2dar_A PDZ and LIM domain prot 99.6 3.8E-16 1.3E-20 100.3 5.9 71 67-142 13-83 (90)
44 1nyp_A Pinch protein; LIM doma 99.6 1.1E-16 3.7E-21 97.0 3.1 62 16-80 4-65 (66)
45 1x61_A Thyroid receptor intera 99.6 1.6E-16 5.4E-21 97.9 3.3 68 15-87 3-71 (72)
46 1x4l_A Skeletal muscle LIM-pro 99.6 2.3E-16 8E-21 97.1 4.1 59 83-142 7-67 (72)
47 2d8x_A Protein pinch; LIM doma 99.6 2.4E-16 8.1E-21 96.6 3.7 63 15-80 3-65 (70)
48 2cup_A Skeletal muscle LIM-pro 99.6 2.6E-16 8.9E-21 103.1 3.7 85 83-170 7-93 (101)
49 2l3k_A Rhombotin-2, linker, LI 99.6 4.4E-16 1.5E-20 105.7 4.9 72 74-145 1-72 (123)
50 2d8z_A Four and A half LIM dom 99.6 7.3E-16 2.5E-20 94.4 5.3 60 78-142 4-63 (70)
51 2iyb_E Testin, TESS, TES; LIM 99.6 4E-16 1.4E-20 94.2 3.9 58 83-141 4-64 (65)
52 2cur_A Skeletal muscle LIM-pro 99.6 7.2E-16 2.4E-20 94.1 4.7 58 83-143 7-64 (69)
53 1g47_A Pinch protein; LIM doma 99.6 4.3E-16 1.5E-20 97.1 3.8 59 83-142 13-71 (77)
54 1x3h_A Leupaxin; paxillin fami 99.6 3.4E-16 1.2E-20 98.3 3.2 66 16-86 14-79 (80)
55 2cor_A Pinch protein; LIM doma 99.6 5.3E-16 1.8E-20 97.3 4.0 64 13-80 11-74 (79)
56 2dlo_A Thyroid receptor-intera 99.6 4.1E-16 1.4E-20 98.2 3.4 67 15-86 13-80 (81)
57 2d8x_A Protein pinch; LIM doma 99.6 1.1E-15 3.7E-20 93.6 5.0 58 83-143 7-64 (70)
58 2cuq_A Four and A half LIM dom 99.6 5.2E-16 1.8E-20 97.4 3.5 65 16-85 14-78 (80)
59 1b8t_A Protein (CRP1); LIM dom 99.6 8.3E-16 2.8E-20 111.9 4.3 73 15-91 113-185 (192)
60 2xqn_T Testin, TESS; metal-bin 99.6 2.3E-15 7.8E-20 102.4 5.6 82 83-168 5-88 (126)
61 1wig_A KIAA1808 protein; LIM d 99.6 1.1E-15 3.9E-20 94.3 3.6 64 15-80 3-66 (73)
62 2cu8_A Cysteine-rich protein 2 99.6 4E-15 1.4E-19 92.5 5.1 58 83-142 11-69 (76)
63 1x63_A Skeletal muscle LIM-pro 99.6 2.1E-15 7.2E-20 95.1 3.8 66 16-85 14-80 (82)
64 1x62_A C-terminal LIM domain p 99.5 1.2E-15 4E-20 95.7 2.2 58 83-143 17-74 (79)
65 2cor_A Pinch protein; LIM doma 99.5 4.6E-15 1.6E-19 92.9 4.9 56 83-142 17-72 (79)
66 1iml_A CRIP, cysteine rich int 99.5 5.3E-15 1.8E-19 91.9 5.1 67 82-152 1-68 (76)
67 1x64_A Alpha-actinin-2 associa 99.5 3.9E-15 1.3E-19 95.4 4.6 58 83-143 27-84 (89)
68 2dj7_A Actin-binding LIM prote 99.5 4.3E-15 1.5E-19 93.3 4.6 59 82-143 16-74 (80)
69 3f6q_B LIM and senescent cell 99.5 3.6E-15 1.2E-19 91.5 3.0 63 15-79 9-72 (72)
70 1a7i_A QCRP2 (LIM1); LIM domai 99.5 5.9E-15 2E-19 92.8 4.0 64 83-150 9-72 (81)
71 2l4z_A DNA endonuclease RBBP8, 99.5 6.8E-15 2.3E-19 99.7 3.9 59 83-142 63-122 (123)
72 2xjy_A Rhombotin-2; oncoprotei 99.5 1.2E-14 4.2E-19 99.4 5.2 87 82-169 3-92 (131)
73 2l3k_A Rhombotin-2, linker, LI 99.5 7.6E-15 2.6E-19 99.5 3.8 73 18-93 9-82 (123)
74 1x6a_A LIMK-2, LIM domain kina 99.5 5.3E-15 1.8E-19 93.0 2.6 66 16-85 14-80 (81)
75 1j2o_A FLIN2, fusion of rhombo 99.5 9.9E-15 3.4E-19 97.7 3.9 64 82-146 4-68 (114)
76 2iyb_E Testin, TESS, TES; LIM 99.5 7.2E-15 2.5E-19 88.6 2.8 59 17-77 2-64 (65)
77 2jtn_A LIM domain-binding prot 99.5 3E-14 1E-18 102.8 6.3 99 65-170 43-146 (182)
78 2egq_A FHL1 protein; LIM domai 99.5 9.4E-15 3.2E-19 91.0 2.6 59 16-76 14-76 (77)
79 2d8y_A Eplin protein; LIM doma 99.5 1.9E-14 6.6E-19 92.4 3.6 60 83-144 17-76 (91)
80 1m3v_A FLIN4, fusion of the LI 99.5 1.5E-14 5.1E-19 97.9 3.0 69 83-152 7-76 (122)
81 1rut_X Flinc4, fusion protein 99.5 4.5E-14 1.5E-18 102.4 5.1 87 83-170 7-96 (188)
82 2co8_A NEDD9 interacting prote 99.4 1.4E-14 4.9E-19 91.3 0.6 59 82-142 16-76 (82)
83 2rgt_A Fusion of LIM/homeobox 99.4 2.2E-13 7.4E-18 97.2 4.6 83 82-169 7-91 (169)
84 1v6g_A Actin binding LIM prote 99.3 6.8E-13 2.3E-17 83.3 4.1 62 16-80 14-76 (81)
85 1zfo_A LAsp-1; LIM domain, zin 98.1 6.3E-07 2.2E-11 45.3 0.9 29 17-45 3-31 (31)
86 1zfo_A LAsp-1; LIM domain, zin 97.8 5.3E-06 1.8E-10 41.9 1.1 27 83-110 5-31 (31)
87 4ap4_A E3 ubiquitin ligase RNF 92.7 0.11 3.8E-06 34.1 3.7 102 45-150 8-118 (133)
88 1t1h_A Gspef-atpub14, armadill 88.4 0.28 9.7E-06 29.1 2.3 48 43-93 7-55 (78)
89 2ect_A Ring finger protein 126 84.5 0.67 2.3E-05 27.4 2.5 16 15-30 13-28 (78)
90 1iym_A EL5; ring-H2 finger, ub 83.8 0.81 2.8E-05 24.9 2.5 26 66-91 28-53 (55)
91 2d8t_A Dactylidin, ring finger 83.7 0.62 2.1E-05 27.1 2.1 28 65-92 33-60 (71)
92 2cs3_A Protein C14ORF4, MY039 83.5 0.74 2.5E-05 27.9 2.3 52 14-72 12-63 (93)
93 4ayc_A E3 ubiquitin-protein li 83.2 0.57 2E-05 31.3 2.0 45 45-92 54-98 (138)
94 4ap4_A E3 ubiquitin ligase RNF 81.8 0.95 3.2E-05 29.4 2.6 8 112-119 116-123 (133)
95 2kre_A Ubiquitin conjugation f 81.8 1 3.4E-05 28.4 2.6 49 42-93 27-75 (100)
96 2ecy_A TNF receptor-associated 81.5 0.36 1.2E-05 27.7 0.4 46 45-93 16-62 (66)
97 2csy_A Zinc finger protein 183 81.3 0.45 1.5E-05 28.5 0.8 45 45-92 16-60 (81)
98 2djb_A Polycomb group ring fin 81.0 0.5 1.7E-05 27.6 0.9 46 45-93 16-62 (72)
99 2ysl_A Tripartite motif-contai 80.6 0.94 3.2E-05 26.3 2.1 46 45-93 21-69 (73)
100 1jm7_B BARD1, BRCA1-associated 78.1 1.3 4.6E-05 28.5 2.4 45 44-93 22-67 (117)
101 2ecw_A Tripartite motif-contai 77.8 1.1 3.6E-05 26.7 1.7 46 45-93 20-71 (85)
102 1wgm_A Ubiquitin conjugation f 77.6 1.5 5E-05 27.5 2.4 49 42-93 20-69 (98)
103 2kr4_A Ubiquitin conjugation f 77.6 0.66 2.3E-05 28.3 0.7 49 42-93 12-60 (85)
104 2y43_A E3 ubiquitin-protein li 77.6 0.91 3.1E-05 28.2 1.4 45 45-92 23-68 (99)
105 2ecm_A Ring finger and CHY zin 77.1 1.1 3.7E-05 24.3 1.5 27 65-91 27-53 (55)
106 2ecn_A Ring finger protein 141 76.7 0.92 3.1E-05 26.1 1.2 45 45-93 16-60 (70)
107 2e5r_A Dystrobrevin alpha; ZZ 76.3 3.6 0.00012 23.6 3.6 39 100-141 4-45 (63)
108 2ckl_A Polycomb group ring fin 76.3 1.2 4.2E-05 28.1 1.8 45 45-92 16-61 (108)
109 2jne_A Hypothetical protein YF 76.3 4.9 0.00017 25.2 4.4 60 45-120 33-92 (101)
110 2kiz_A E3 ubiquitin-protein li 76.2 1 3.6E-05 25.8 1.3 26 67-92 37-62 (69)
111 2ep4_A Ring finger protein 24; 75.6 1.2 4.2E-05 25.9 1.5 28 66-93 37-64 (74)
112 2egp_A Tripartite motif-contai 75.3 1 3.5E-05 26.5 1.2 11 83-93 55-65 (79)
113 2ct0_A Non-SMC element 1 homol 75.2 1.9 6.4E-05 25.7 2.3 19 12-30 10-28 (74)
114 2ecv_A Tripartite motif-contai 75.2 0.93 3.2E-05 27.0 0.9 46 45-93 20-71 (85)
115 1bor_A Transcription factor PM 73.3 1.7 5.9E-05 23.9 1.7 43 45-93 7-49 (56)
116 2ea6_A Ring finger protein 4; 73.2 1.4 4.7E-05 25.1 1.3 27 66-92 41-67 (69)
117 3l11_A E3 ubiquitin-protein li 72.6 1.7 5.8E-05 27.8 1.8 45 45-92 16-61 (115)
118 2gvi_A Conserved hypothetical 72.3 1.2 4.3E-05 31.9 1.1 30 110-140 173-202 (204)
119 2xeu_A Ring finger protein 4; 71.7 1.1 3.7E-05 25.1 0.6 49 45-93 4-56 (64)
120 2djb_A Polycomb group ring fin 71.6 2.7 9.2E-05 24.3 2.4 43 13-55 11-61 (72)
121 1jjd_A Metallothionein, SMTA; 71.5 2 6.8E-05 24.1 1.6 29 111-140 9-38 (55)
122 2eqg_A Tumor necrosis factor, 71.1 1.4 4.9E-05 23.3 0.9 18 125-142 22-39 (49)
123 2yur_A Retinoblastoma-binding 71.0 1.1 3.9E-05 26.2 0.6 46 45-93 16-64 (74)
124 3hct_A TNF receptor-associated 70.8 1.1 3.6E-05 29.0 0.4 46 45-93 19-65 (118)
125 3vk6_A E3 ubiquitin-protein li 70.6 2.3 7.7E-05 27.0 1.9 64 47-119 4-71 (101)
126 3lrq_A E3 ubiquitin-protein li 69.8 1.2 4.2E-05 27.8 0.6 46 45-93 23-70 (100)
127 4gne_A Histone-lysine N-methyl 69.6 12 0.0004 23.9 5.2 54 13-91 11-68 (107)
128 2jrp_A Putative cytoplasmic pr 69.1 9.3 0.00032 23.1 4.4 11 110-120 52-62 (81)
129 3ng2_A RNF4, snurf, ring finge 69.1 0.77 2.6E-05 26.5 -0.5 30 64-93 34-63 (71)
130 3fl2_A E3 ubiquitin-protein li 69.1 1.8 6.3E-05 28.0 1.3 46 45-93 53-99 (124)
131 3hcs_A TNF receptor-associated 68.7 1.3 4.5E-05 30.5 0.6 46 45-93 19-65 (170)
132 1x4j_A Ring finger protein 38; 67.4 3.6 0.00012 23.9 2.3 10 83-92 62-71 (75)
133 2l0b_A E3 ubiquitin-protein li 65.9 2.1 7.3E-05 26.1 1.1 48 45-92 41-88 (91)
134 1jm7_A BRCA1, breast cancer ty 65.6 2 6.8E-05 27.1 1.0 46 45-93 22-70 (112)
135 2ct2_A Tripartite motif protei 65.5 2.3 7.8E-05 25.5 1.2 30 64-93 36-68 (88)
136 1rmd_A RAG1; V(D)J recombinati 65.5 1.8 6.2E-05 27.7 0.7 46 45-93 24-70 (116)
137 2ckl_B Ubiquitin ligase protei 63.6 2.4 8.2E-05 29.0 1.1 48 43-93 53-102 (165)
138 1chc_A Equine herpes virus-1 r 63.0 2.5 8.4E-05 24.0 0.9 29 64-92 23-51 (68)
139 1z6u_A NP95-like ring finger p 62.4 2.9 9.9E-05 28.3 1.3 46 45-93 79-125 (150)
140 2bay_A PRE-mRNA splicing facto 62.0 3.2 0.00011 23.5 1.2 46 45-93 4-50 (61)
141 3knv_A TNF receptor-associated 61.2 2 6.9E-05 28.8 0.3 45 45-92 32-77 (141)
142 4ic3_A E3 ubiquitin-protein li 61.1 5.7 0.0002 23.1 2.4 42 45-93 25-67 (74)
143 2c2l_A CHIP, carboxy terminus 59.5 3.4 0.00012 30.4 1.4 51 40-93 204-255 (281)
144 3ztg_A E3 ubiquitin-protein li 58.4 1.9 6.6E-05 26.2 -0.1 44 45-91 14-60 (92)
145 3ttc_A HYPF, transcriptional r 55.3 5.2 0.00018 33.9 1.9 88 11-119 11-99 (657)
146 2dmj_A Poly (ADP-ribose) polym 54.5 5.5 0.00019 25.3 1.6 29 83-111 27-65 (106)
147 4g9i_A Hydrogenase maturation 54.4 8.3 0.00028 33.3 3.1 86 13-119 102-188 (772)
148 1v9x_A Poly (ADP-ribose) polym 53.5 5.9 0.0002 25.6 1.6 29 83-111 22-60 (114)
149 3nw0_A Non-structural maintena 53.4 4.9 0.00017 29.5 1.3 15 16-30 179-193 (238)
150 1g25_A CDK-activating kinase a 52.1 6.7 0.00023 21.9 1.5 49 45-93 4-55 (65)
151 2ecj_A Tripartite motif-contai 50.2 4.8 0.00017 21.8 0.7 12 18-29 16-27 (58)
152 2ecg_A Baculoviral IAP repeat- 48.9 5.2 0.00018 23.3 0.7 42 45-93 26-68 (75)
153 2vpb_A Hpygo1, pygopus homolog 48.3 7.3 0.00025 22.4 1.3 27 83-109 10-39 (65)
154 2f42_A STIP1 homology and U-bo 47.1 5.6 0.00019 27.9 0.8 49 42-93 104-153 (179)
155 2ds5_A CLPX, ATP-dependent CLP 46.9 19 0.00065 19.6 2.8 32 110-141 12-43 (51)
156 3od8_A Poly [ADP-ribose] polym 46.0 6.4 0.00022 25.6 0.9 14 83-96 40-53 (116)
157 1wg2_A Zinc finger (AN1-like) 45.6 17 0.00058 20.9 2.5 16 14-29 12-27 (64)
158 2cot_A Zinc finger protein 435 45.2 7.9 0.00027 22.1 1.1 42 13-55 14-57 (77)
159 3odc_A Poly [ADP-ribose] polym 45.0 7.3 0.00025 25.1 1.0 13 83-95 21-33 (111)
160 2lo3_A SAGA-associated factor 44.0 16 0.00054 19.1 2.0 19 13-31 13-31 (44)
161 2dip_A Zinc finger SWIM domain 44.0 20 0.00069 22.4 2.9 36 104-141 27-65 (98)
162 1ovx_A ATP-dependent CLP prote 43.0 20 0.00069 20.8 2.6 32 110-141 19-50 (67)
163 1uw0_A DNA ligase III; DNA rep 42.8 10 0.00035 24.6 1.4 17 14-30 12-28 (117)
164 2ee8_A Protein ODD-skipped-rel 40.4 7.7 0.00026 23.6 0.5 19 12-30 12-30 (106)
165 3vth_A Hydrogenase maturation 40.3 18 0.00063 31.2 3.0 87 12-119 106-193 (761)
166 2yu4_A E3 SUMO-protein ligase 39.9 28 0.00097 21.1 3.2 33 109-143 7-40 (94)
167 2e6s_A E3 ubiquitin-protein li 37.1 34 0.0012 20.2 3.1 28 83-111 28-57 (77)
168 2yho_A E3 ubiquitin-protein li 36.4 22 0.00077 20.9 2.2 41 46-93 20-61 (79)
169 2d8s_A Cellular modulator of i 35.7 29 0.001 20.5 2.6 17 13-29 11-27 (80)
170 1e4u_A Transcriptional repress 35.2 13 0.00046 21.9 1.0 29 65-93 33-62 (78)
171 2ea5_A Cell growth regulator w 34.7 21 0.00071 20.3 1.8 28 62-93 30-58 (68)
172 2ysj_A Tripartite motif-contai 34.6 26 0.0009 19.1 2.2 30 45-77 21-50 (63)
173 2d8v_A Zinc finger FYVE domain 33.6 9.6 0.00033 22.1 0.2 14 128-141 25-38 (67)
174 1weo_A Cellulose synthase, cat 32.6 19 0.00063 22.2 1.3 12 131-142 43-54 (93)
175 2epr_A POZ-, at HOOK-, and zin 32.4 12 0.00043 18.9 0.5 16 15-30 10-25 (48)
176 1wfp_A Zinc finger (AN1-like) 32.0 48 0.0016 19.6 3.0 16 14-29 22-37 (74)
177 1znf_A 31ST zinc finger from X 30.5 18 0.0006 15.1 0.8 10 110-119 2-11 (27)
178 2cs2_A Poly [ADP-ribose] polym 30.2 18 0.00063 24.0 1.1 13 83-95 29-41 (134)
179 1wfl_A Zinc finger protein 216 29.9 52 0.0018 19.4 3.0 12 17-28 25-36 (74)
180 2kvh_A Zinc finger and BTB dom 29.1 16 0.00056 15.4 0.6 10 110-119 4-13 (27)
181 1ard_A Yeast transcription fac 28.9 19 0.00065 15.3 0.8 10 110-119 3-12 (29)
182 1pft_A TFIIB, PFTFIIBN; N-term 28.7 18 0.00061 19.2 0.7 7 46-52 7-13 (50)
183 2yrc_A Protein transport prote 28.1 43 0.0015 18.7 2.3 37 12-53 4-42 (59)
184 3d00_A Tungsten formylmethanof 27.9 18 0.00061 25.5 0.8 25 109-140 163-187 (191)
185 3t6p_A Baculoviral IAP repeat- 27.6 43 0.0015 25.9 3.0 42 45-93 296-338 (345)
186 1wim_A KIAA0161 protein; ring 27.6 48 0.0017 19.8 2.7 33 110-142 6-39 (94)
187 2lv2_A Insulinoma-associated p 27.5 13 0.00043 22.4 -0.0 14 17-30 28-41 (85)
188 2lvu_A Zinc finger and BTB dom 33.5 13 0.00044 15.6 0.0 10 110-119 3-12 (26)
189 2xb1_A Pygopus homolog 2, B-ce 26.9 36 0.0012 21.3 2.1 27 83-109 5-34 (105)
190 1paa_A Yeast transcription fac 26.4 22 0.00076 15.2 0.8 10 110-119 3-12 (30)
191 3htk_C E3 SUMO-protein ligase 25.6 38 0.0013 25.3 2.2 32 44-78 181-213 (267)
192 2hf1_A Tetraacyldisaccharide-1 25.4 24 0.00081 20.5 0.9 24 45-73 9-32 (68)
193 2kvf_A Zinc finger and BTB dom 25.2 21 0.00071 15.1 0.5 10 110-119 4-13 (28)
194 1x6e_A Zinc finger protein 24; 25.1 11 0.00039 21.0 -0.5 42 13-55 10-53 (72)
195 2jr6_A UPF0434 protein NMA0874 24.9 25 0.00086 20.3 0.9 24 45-73 9-32 (68)
196 2jny_A Uncharacterized BCR; st 24.7 25 0.00085 20.3 0.9 24 45-73 11-34 (67)
197 2kvg_A Zinc finger and BTB dom 24.7 20 0.00068 15.2 0.4 10 110-119 4-13 (27)
198 2m0f_A Zinc finger and BTB dom 24.7 21 0.00073 15.0 0.5 10 110-119 3-12 (29)
199 2vje_B MDM4 protein; proto-onc 24.4 20 0.00069 20.0 0.4 29 64-92 26-55 (63)
200 2js4_A UPF0434 protein BB2007; 24.3 23 0.00079 20.6 0.7 10 45-54 9-18 (70)
201 2m0e_A Zinc finger and BTB dom 24.1 24 0.00083 14.7 0.7 10 110-119 3-12 (29)
202 1rik_A E6APC1 peptide; E6-bind 24.0 23 0.00078 15.0 0.6 10 110-119 3-12 (29)
203 2m0d_A Zinc finger and BTB dom 23.6 23 0.00077 15.0 0.5 10 110-119 4-13 (30)
204 1klr_A Zinc finger Y-chromosom 23.2 27 0.00091 14.8 0.7 10 110-119 3-12 (30)
205 2lbz_A Thuricin17, thurincin H 22.7 28 0.00095 16.2 0.7 12 43-54 6-17 (31)
206 2ecl_A Ring-box protein 2; RNF 22.6 73 0.0025 18.5 2.8 9 83-91 66-74 (81)
207 2vje_A E3 ubiquitin-protein li 22.4 23 0.00078 19.8 0.4 28 65-92 28-56 (64)
208 2lvr_A Zinc finger and BTB dom 26.9 20 0.00068 15.4 0.0 11 110-120 4-14 (30)
209 2elx_A Zinc finger protein 406 20.9 28 0.00096 15.6 0.5 11 109-119 7-17 (35)
210 1p7a_A BF3, BKLF, kruppel-like 20.9 32 0.0011 15.7 0.8 11 109-119 11-21 (37)
211 2yql_A PHD finger protein 21A; 20.8 69 0.0024 17.3 2.2 30 14-46 6-37 (56)
212 1srk_A Zinc finger protein ZFP 20.6 29 0.00098 15.7 0.5 10 110-119 8-17 (35)
213 2kfq_A FP1; protein, de novo p 20.5 28 0.00095 15.6 0.4 10 110-119 3-12 (32)
214 2elr_A Zinc finger protein 406 20.5 34 0.0011 15.5 0.8 11 109-119 9-19 (36)
215 1wev_A Riken cDNA 1110020M19; 20.4 15 0.00052 22.3 -0.7 62 83-150 18-82 (88)
216 3mhs_E SAGA-associated factor 20.3 19 0.00066 22.4 -0.2 18 14-31 72-89 (96)
217 1x4w_A Hypothetical protein FL 20.2 73 0.0025 18.4 2.3 15 14-28 12-26 (67)
218 2y1n_A E3 ubiquitin-protein li 20.2 39 0.0013 26.7 1.4 46 45-93 333-379 (389)
219 2lvt_A Zinc finger and BTB dom 25.5 22 0.00075 15.2 0.0 11 110-120 3-13 (29)
220 2pk7_A Uncharacterized protein 20.0 26 0.0009 20.3 0.4 11 45-55 9-19 (69)
221 2k16_A Transcription initiatio 20.0 33 0.0011 19.8 0.8 32 14-45 15-48 (75)
No 1
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=100.00 E-value=3.1e-34 Score=197.84 Aligned_cols=127 Identities=55% Similarity=1.169 Sum_probs=116.2
Q ss_pred cccccccccccccceeEEeCCccccccCccccccccccccCCCeeEEeCCccccccceecccccccccccccccccCCce
Q psy7479 17 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 96 (170)
Q Consensus 17 ~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~~~~~C~~C~~~i~~~~~ 96 (170)
.++|.+|+++|.+.+++.++++.||++||+|..|+.+|.+.+..|+.++|++||+.||.+++++.++|..|+++|.+.+.
T Consensus 2 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~e~ 81 (131)
T 2xjy_A 2 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEM 81 (131)
T ss_dssp CCBBTTTCCBCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECTTSE
T ss_pred cccCcCCCCEeCCcEEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCccce
Confidence 57899999999998788999999999999999999999643467999999999999999999865589999999988778
Q ss_pred EEecCCcccccCccccccCCcccccCCeEEEeCCeeccHHhHHHHhh
Q psy7479 97 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQV 143 (170)
Q Consensus 97 ~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~ 143 (170)
++.+.++.||++||+|..|+++|..+..|+..++++||..||.+++.
T Consensus 82 ~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~C~~c~~~~~~ 128 (131)
T 2xjy_A 82 TMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTK 128 (131)
T ss_dssp EEEETTEEEEGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGHHHHHH
T ss_pred eEeeCCceECccCcccCCCCCCCCCCCEEEEECCEEEcHHHHHHHhh
Confidence 99999999999999999999999668889999999999999998754
No 2
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=100.00 E-value=4.2e-33 Score=190.94 Aligned_cols=122 Identities=24% Similarity=0.517 Sum_probs=112.8
Q ss_pred CcccccccccccccceeEEeCCccccccCccccccccccccCCCeeEEeCCccccccceecccccccccccccccccCCc
Q psy7479 16 GLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 95 (170)
Q Consensus 16 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~~~~~C~~C~~~i~~~~ 95 (170)
..++|.+|+++|.+++++.++|+.||++||+|..|+++|. +..|+.++|++||+.||.+++++ +|.+|+++|.+.+
T Consensus 2 ~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~--~~~f~~~~g~~yC~~cy~~~~~~--~C~~C~~~I~~~~ 77 (126)
T 2xqn_T 2 EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILA--GEIYVMVNDKPVCKPCYVKNHAV--VCQGCHNAIDPEV 77 (126)
T ss_dssp CCCBBTTTSSBCCSSCEEEETTEEECGGGSBCTTTCCBCT--TSEEEEETTEEEEHHHHHHHSCC--BCTTTCSBCCTTS
T ss_pred cCCCCccCCCEeCCceEEeeCCCCccCCCCCcCCCCCCCC--cCEEEeECCEEechHHhCcCcCc--cCcccCCcCCcCc
Confidence 3578999999999877899999999999999999999997 45799999999999999999998 9999999998767
Q ss_pred eEEecCCcccc--cCccccccCCcccccCCeEEEeCCeeccHHhHHHHh
Q psy7479 96 MVMRAKNNVYH--LECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQ 142 (170)
Q Consensus 96 ~~~~~~~~~~H--~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~ 142 (170)
.+|.+.++.|| ++||+|..|+++| .+..|++.+|++||+.++.++|
T Consensus 78 ~~~~a~~~~~H~~~~CF~C~~C~~~l-~~~~f~~~~~~~yC~~~~~~~f 125 (126)
T 2xqn_T 78 QRVTYNNFSWHASTECFLCSCCSKCL-IGQKFMPVEGMVFCSVECKKRM 125 (126)
T ss_dssp CEEEETTEEEESSTTTSBCTTTCCBC-TTSEEEEETTEEESSHHHHHSC
T ss_pred eEEECCCCEeeCCCCCcCcCCCCCcc-CCCeeEeECCEEcchHHhhhhc
Confidence 88999999999 9999999999999 6889999999999998887753
No 3
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.97 E-value=7.9e-33 Score=201.70 Aligned_cols=131 Identities=47% Similarity=1.061 Sum_probs=116.1
Q ss_pred CCcccccccccccccceeEEeCCccccccCccccccccccccCCCeeEEeCCccccccceecccccccccccccccccCC
Q psy7479 15 GGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 94 (170)
Q Consensus 15 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~~~~~C~~C~~~i~~~ 94 (170)
...++|.+|+++|.+.+++.++++.||++||+|..|+++|...+..|+.++|++||+.||.++|+++++|..|+++|.+.
T Consensus 3 l~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~ 82 (188)
T 1rut_X 3 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPAS 82 (188)
T ss_dssp -CCCBBTTTCCBCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECTT
T ss_pred CCCCcCccCCCEeCCceeEEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccccC
Confidence 34688999999999988899999999999999999999997324579999999999999999998634699999999887
Q ss_pred ceEEecCCcccccCccccccCCcccccCCeEEEeCCeeccHHhHHHHhhhc
Q psy7479 95 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFA 145 (170)
Q Consensus 95 ~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~ 145 (170)
+.++.+.++.||++||+|..|+++|..+..|+..++++||+.||.+++...
T Consensus 83 e~~i~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~c~~~~~~~~ 133 (188)
T 1rut_X 83 ELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTALING 133 (188)
T ss_dssp SEEEEETTEEECGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGCCTTTC--
T ss_pred cEEEEcCCCEEeCCCCeECCCCCCCCCCCeEEEECCeEECHHHHHHHhccc
Confidence 788999999999999999999999966788999999999999998875433
No 4
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.97 E-value=2.7e-32 Score=195.73 Aligned_cols=125 Identities=43% Similarity=0.939 Sum_probs=110.7
Q ss_pred CCcccccccccccccceeEEeCCccccccCccccccccccccCCCeeEEeCCccccccceecccccccccccccccccCC
Q psy7479 15 GGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 94 (170)
Q Consensus 15 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~~~~~C~~C~~~i~~~ 94 (170)
.+.++|.+|+++|.+.+++.++|+.||++||+|..|+++|.. . .|.++|++||+.||.++|++ +|.+|+++|.+.
T Consensus 4 ~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~--~-~f~~~g~~yC~~~y~~~f~~--~C~~C~~~I~~~ 78 (169)
T 2rgt_A 4 PEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAE--R-CFSRGESVYCKDDFFKRFGT--KCAACQLGIPPT 78 (169)
T ss_dssp ---CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCS--C-CEESSSCEECHHHHHHHHSC--BCTTTCCBCCTT
T ss_pred CCCCccccCCCccCCcEEEEECCcEEccccCccCCCCCcCCC--C-CcccCCeeeecccccccccc--cccccccccCCC
Confidence 456899999999999878899999999999999999999973 3 36899999999999999998 999999999887
Q ss_pred ceEEecCCcccccCccccccCCcccccCCeEEE-eCCeeccHHhHHHHhhh
Q psy7479 95 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYL-CDNKILCEYDYEERQVF 144 (170)
Q Consensus 95 ~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~-~~~~~~C~~c~~~~~~~ 144 (170)
+.++.+.++.||++||+|..|+++|..++.|+. .+|++||+.||.+++..
T Consensus 79 ~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~~~~ 129 (169)
T 2rgt_A 79 QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQG 129 (169)
T ss_dssp SEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHHHHC
T ss_pred cEEEEcCCceEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHHHHhhc
Confidence 778899999999999999999999965778865 58999999999987643
No 5
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.97 E-value=2.4e-31 Score=192.90 Aligned_cols=123 Identities=44% Similarity=0.972 Sum_probs=110.8
Q ss_pred CCCcccccccccccccceeEEeCCccccccCccccccccccccCCCeeEEeCCccccccceecccccccccccccccccC
Q psy7479 14 SGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 93 (170)
Q Consensus 14 ~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~~~~~C~~C~~~i~~ 93 (170)
....++|.+|+++|.+.+++.++++.||++||+|..|+++|.. . .|.++|++||+.||.++|++ +|.+|+++|.+
T Consensus 57 ~~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~--~-~f~~~g~~yC~~~y~~~f~~--kC~~C~~~I~~ 131 (182)
T 2jtn_A 57 TPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAE--R-CFSRGESVYCKDDFFKRFGT--KCAACQLGIPP 131 (182)
T ss_dssp CCSCCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSS--C-CEEETTEEECHHHHHHTTSC--CCTTTCCCCCS
T ss_pred CCCCCcCccCCCCccCceeEEecCCeEccccCccCCCCCccCC--C-ceeECCEeeecCcccccccc--ccccCCCccCC
Confidence 5567899999999999888899999999999999999999973 3 35899999999999999998 99999999988
Q ss_pred CceEEecCCcccccCccccccCCcccccCCeEEE-eCCeeccHHhHHHH
Q psy7479 94 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYL-CDNKILCEYDYEER 141 (170)
Q Consensus 94 ~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~-~~~~~~C~~c~~~~ 141 (170)
.+.++.+.++.||++||+|..|+++|..+..|+. .++++||+.||.++
T Consensus 132 ~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC~~cy~~~ 180 (182)
T 2jtn_A 132 TQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETA 180 (182)
T ss_dssp SCCCCEETTEECCTTTCCCTTTCCCCCTTCEEEECTTSCEECHHHHHHH
T ss_pred CceEEecCCCCEEeCCCcCCCCCCCCCCCCceEEccCCEEECHHHHHHh
Confidence 6667889999999999999999999965778875 58999999999875
No 6
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.96 E-value=1.9e-30 Score=189.63 Aligned_cols=133 Identities=23% Similarity=0.490 Sum_probs=113.5
Q ss_pred CCCCcccccccccccccceeEEeCCccccccCccccccccccccCCCeeEEeCCccccccceecccccc-----------
Q psy7479 13 ASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTT----------- 81 (170)
Q Consensus 13 ~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~~~----------- 81 (170)
+..+.++|.+|+++|...+.+.++++.||++||+|..|+++|.. ..|+.++|++||+.||.++|++.
T Consensus 3 ~~~~~~~C~~C~~~I~~~~~v~a~g~~wH~~CF~C~~C~~~L~~--~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~~g~~ 80 (192)
T 1b8t_A 3 NWGGGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDS--TTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTL 80 (192)
T ss_dssp CCCCCEECTTTCCEECSSCCEEETTEEECTTTCBCTTTCCBCCS--SSEEEETTEEEEHHHHHHHHSCCCCCCCCCCCCC
T ss_pred CCCCCCcCccCCCeecceeEEEeCCceecCCCCcCcccCCcCCC--CeeEecCCEeeChhhhHhhcCccccccccccccE
Confidence 35567899999999986667889999999999999999999974 45999999999999999998761
Q ss_pred -----------------------------------cccccccccccCCceEEecCCcccccCccccccCCcccccCCeEE
Q psy7479 82 -----------------------------------GYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFY 126 (170)
Q Consensus 82 -----------------------------------~~C~~C~~~i~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~ 126 (170)
++|.+|+++|.+.+ .+.+.++.||++||+|..|+++| .+..|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~C~~C~~~I~~~~-~v~a~~~~~H~~CF~C~~C~~~L-~~~~~~ 158 (192)
T 1b8t_A 81 STDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAAE-KVIGAGKSWHKSCFRCAKCGKSL-ESTTLA 158 (192)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECTTTSCEECSSS-CEEETTEEECTTTCBCTTTCCBC-CSSSEE
T ss_pred ecCCCcccccccccccccCCCCcCccccccccCCCCcCCCCCCEecCcE-EEecCCCccchhcCCccccCCCC-CCCccc
Confidence 13889999997644 55799999999999999999999 556799
Q ss_pred EeCCeeccHHhHHHHhhhccccCCC
Q psy7479 127 LCDNKILCEYDYEERQVFANIAYNP 151 (170)
Q Consensus 127 ~~~~~~~C~~c~~~~~~~~~~~~~~ 151 (170)
..++++||+.||.++ +.+.+...
T Consensus 159 ~~~g~~yC~~cy~~~--f~~kc~~C 181 (192)
T 1b8t_A 159 DKDGEIYCKGCYAKN--FGPKGFGF 181 (192)
T ss_dssp EETTEEEEHHHHHHH--TCCCCCCC
T ss_pred ccCCEEeCHHHHHHh--cCCcCCCC
Confidence 999999999999998 44444443
No 7
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.94 E-value=6.5e-28 Score=158.96 Aligned_cols=98 Identities=30% Similarity=0.574 Sum_probs=89.9
Q ss_pred CCccccccccccccc-ceeEEeCCccccccCccccccccccccCCCeeEEeCCccccccceecccccccccccccccccC
Q psy7479 15 GGLKECASCGKRITE-RFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 93 (170)
Q Consensus 15 ~~~~~C~~C~~~I~~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~~~~~C~~C~~~i~~ 93 (170)
...++|.+|+++|.. +.++.++++.||++||+|..|+++|. +..|+.++|++||+.||.+++++ +|.+|+++|.+
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~--~~~~~~~~g~~yC~~cy~~~~~~--~C~~C~~~I~~ 78 (101)
T 2cup_A 3 SGSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLA--NETFVAKDNKILCNKCTTREDSP--KCKGCFKAIVA 78 (101)
T ss_dssp SCCCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTT--SSCCEEETTEEECHHHHTTCCCC--BCSSSCCBCCS
T ss_pred CCCCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCC--cCeeECcCCEEEChhHhhhhcCC--ccccCCCcccc
Confidence 456899999999974 66899999999999999999999996 45689999999999999999998 99999999986
Q ss_pred CceEEecCCcccccCccccccCC
Q psy7479 94 FEMVMRAKNNVYHLECFACQQCN 116 (170)
Q Consensus 94 ~~~~~~~~~~~~H~~Cf~C~~C~ 116 (170)
++.+|.++++.||++||+|..|+
T Consensus 79 ~~~~~~a~~~~~H~~CF~C~~C~ 101 (101)
T 2cup_A 79 GDQNVEYKGTVWHKDCFSGPSSG 101 (101)
T ss_dssp SSCEEESSSCEEETTTCCCTTCC
T ss_pred CCeEEEeCCcchHHhCCCCCCCC
Confidence 56899999999999999999985
No 8
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.90 E-value=1.9e-25 Score=151.99 Aligned_cols=113 Identities=33% Similarity=0.737 Sum_probs=96.1
Q ss_pred CCcccccccccccccceeEEeCCccccccCccccccccccccCCCeeEEeCCccccccceecccccccccccccccccCC
Q psy7479 15 GGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 94 (170)
Q Consensus 15 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~~~~~C~~C~~~i~~~ 94 (170)
...++|.+|+++|.+.+++.++++.||++||+|..|+++|.+.+..|+.++|++||+.||.++|+++++|.+|+++|.+
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~- 81 (122)
T 1m3v_A 3 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG- 81 (122)
T ss_dssp SCCCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCC-
T ss_pred CCCCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCc-
Confidence 4568999999999998778999999999999999999999632356899999999999999999976689999999976
Q ss_pred ceEEecCCcccccCccccccCCcccccCCeEEEeCCeeccHHhHHHHhh
Q psy7479 95 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQV 143 (170)
Q Consensus 95 ~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~ 143 (170)
..+.+.++ ..| .++.|+..++++||..|+.+++.
T Consensus 82 -~~~~~~g~-------------~~l-~g~~f~~~~~~~yC~~~~~~~~~ 115 (122)
T 1m3v_A 82 -GDVMVVGE-------------PTL-MGGEFGDEDERLITRLENTQFDA 115 (122)
T ss_dssp -EESSSSSS-------------SSC-CSCTTCCTTCCCCEECTTTTTTC
T ss_pred -hheEEcCC-------------cCC-CCCccEecCCEeEccCcchhchh
Confidence 34455542 245 78899999999999999987643
No 9
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.86 E-value=3.2e-23 Score=139.33 Aligned_cols=105 Identities=39% Similarity=0.760 Sum_probs=88.5
Q ss_pred CcccccccccccccceeEEeCCccccccCccccccccccccCCCeeEEeCCccccccceecccccccccccccccccCCc
Q psy7479 16 GLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 95 (170)
Q Consensus 16 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~~~~~C~~C~~~i~~~~ 95 (170)
..++|.+|+++|.+.+++.++++.||++||+|..|+++|.+.+..|+.++|++||+.||.++|++ +|..|.. +
T Consensus 2 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~--~c~~c~~---~-- 74 (114)
T 1j2o_A 2 SLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGS--GGHMGSG---G-- 74 (114)
T ss_dssp CCBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTS--CCSSCBS---C--
T ss_pred cCCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCc--ccCcCCC---C--
Confidence 46889999999999888999999999999999999999973235689999999999999999998 9888862 1
Q ss_pred eEEecCCcccccCccccccCCcccccCCeEEEeCCeeccHHhHHHHh
Q psy7479 96 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQ 142 (170)
Q Consensus 96 ~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~ 142 (170)
.+|. |++++..++.|++.++++||..|+.++.
T Consensus 75 ~~~~---------------~~~~~~~g~~f~~~~~~~~C~~~~~~~~ 106 (114)
T 1j2o_A 75 DVMV---------------VGEPTLMGGEFGDEDERLITRLENTQFD 106 (114)
T ss_dssp SCCC---------------SSCSSTTSSBCCCSSSCCCEEEECTTCC
T ss_pred ceeE---------------cCCccCCCCeeEEcCCEeecchhhhccc
Confidence 2332 4456547889999999999999988763
No 10
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.9e-21 Score=123.16 Aligned_cols=75 Identities=21% Similarity=0.417 Sum_probs=69.5
Q ss_pred CCccccccceecccccccccccccccccCCceEEecCCcccccCccccccCCcccccCCeEEEeCCeeccHHhHHHHh
Q psy7479 65 ANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQ 142 (170)
Q Consensus 65 ~~~~yC~~c~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~ 142 (170)
+|++||+.||.+++++ +|.+|+++|.+++.++.+.++.||++||+|+.|+++| .+..|+..++++||+.||.+++
T Consensus 1 ~g~~yC~~~y~~~~~~--~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L-~~~~f~~~~~~~~C~~c~~~~~ 75 (82)
T 2ehe_A 1 GSSGSSGPCYDNTFAN--TCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSL-ADEPFTCQDSELLCNDCYCSAF 75 (82)
T ss_dssp CCCCCCCCCCCCCCSC--BCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBC-SSCCEEEETTEEEETTTSSCCG
T ss_pred CCceechhHhCcccCC--cCccCCCccccCcEEEEeCCccccccCCeecCCCCcc-CCCccEeeCCEEECHHHHhhhc
Confidence 5889999999999998 9999999998656889999999999999999999999 6778999999999999998874
No 11
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.83 E-value=8.9e-21 Score=120.05 Aligned_cols=76 Identities=21% Similarity=0.352 Sum_probs=69.4
Q ss_pred CCccccccceecccccccccccccccccCCceEEecCCcccccCccccccCCcccccCCeEEEeCCeeccHHhHHHHhh
Q psy7479 65 ANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQV 143 (170)
Q Consensus 65 ~~~~yC~~c~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~ 143 (170)
++.+||++||.+++++ +|.+|+++|.+.+.++.+.++.||++||+|..|+++| .+..|+..++++||+.||.+++.
T Consensus 1 ~~~~yC~~cy~~~~~~--~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~~~~yC~~cy~~~f~ 76 (82)
T 1x63_A 1 GSSGSSGKCTTREDSP--KCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVI-GTGSFFPKGEDFYCVTCHETKFA 76 (82)
T ss_dssp CCSCCCCCCCSCCCSC--BCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCC-TTSCEEEETTEEEEHHHHHHHTS
T ss_pred CCCcCchhHHccccCC--cCccCCcccccCceEEEECccccccccCchhhCCCcc-CCCccEeeCCEEECHHHHHHHhC
Confidence 3689999999999998 9999999998767889999999999999999999999 55689999999999999998843
No 12
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=7.2e-21 Score=119.07 Aligned_cols=73 Identities=19% Similarity=0.429 Sum_probs=67.2
Q ss_pred CCccccccceecccccccccccccccccC---CceEEecCCcccccCccccccCCcccccCCeEEEeCCeeccHHhHHH
Q psy7479 65 ANLILCKRDYLRLFGTTGYCAACTKVIPA---FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 140 (170)
Q Consensus 65 ~~~~yC~~c~~~~~~~~~~C~~C~~~i~~---~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~ 140 (170)
++++||++||.+++++ +|.+|+++|.+ .+.++.+.++.||++||+|..|+++| .+..|+..++++||+.||.+
T Consensus 1 g~~~yC~~cy~~~~~~--~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L-~~~~f~~~~~~~yC~~cy~~ 76 (77)
T 2egq_A 1 GSSGSSGDCYKNFVAK--KCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNL-ANKRFVFHQEQVYCPDCAKK 76 (77)
T ss_dssp CCSSCCTTCCCSCCCC--CCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBC-TTSCCCEETTEECCHHHHHH
T ss_pred CCCeEchhHhchhhCc--cCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCC-CCCccEeECCEEEChHHhcc
Confidence 4689999999999998 99999999986 45789999999999999999999999 67789999999999999975
No 13
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.82 E-value=1.4e-20 Score=118.54 Aligned_cols=74 Identities=22% Similarity=0.426 Sum_probs=68.0
Q ss_pred CCccccccceecccccccccccccccccCCceEEecCCcccccCccccccCCcccccCCeEEEeCCeeccHHhHHHHhh
Q psy7479 65 ANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQV 143 (170)
Q Consensus 65 ~~~~yC~~c~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~ 143 (170)
+|++||++||.+++++ +|.+|+++|.+ ..|.+.++.||++||+|..|+++| .+..|+..++++||+.||.+++.
T Consensus 1 gg~~yC~~cy~~~~~~--~C~~C~~~I~~--~~v~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~~~~yC~~cy~~~f~ 74 (80)
T 2cuq_A 1 GSSGSSGPCYENKFAP--RCARCSKTLTQ--GGVTYRDQPWHRECLVCTGCQTPL-AGQQFTSRDEDPYCVACFGELFA 74 (80)
T ss_dssp CCCCSCCCCCCCCSSC--CCTTTCCCCCS--CCEESSSSEECTTTCBCSSSCCBC-TTCCEEECSSSEEEHHHHHHHTT
T ss_pred CCcEEcHHHHccccCC--cCCCCCCEecC--cEEEECCchhhhhhCCcccCCCcC-CCCeeEeECCEEECHHHHHHHcC
Confidence 4789999999999998 99999999976 478999999999999999999999 67789999999999999998843
No 14
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.81 E-value=3e-20 Score=117.07 Aligned_cols=73 Identities=27% Similarity=0.675 Sum_probs=66.9
Q ss_pred CCccccccceecccccccccccccccccCCceEEecCCcccccCccccccCCcccccCCeEEEeCCeeccHHhHHHHh
Q psy7479 65 ANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQ 142 (170)
Q Consensus 65 ~~~~yC~~c~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~ 142 (170)
+|++||++||.+++++ +|.+|+++|.+ .+|.+.++.||++||+|..|+++| .+..|+..++++||+.||.+++
T Consensus 1 gg~~yC~~~y~~~~~~--~C~~C~~~I~~--~~v~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~~~~yC~~~y~~~f 73 (80)
T 1x3h_A 1 GSSGSSGKDFLAMFSP--KCGGCNRPVLE--NYLSAMDTVWHPECFVCGDCFTSF-STGSFFELDGRPFCELHYHHRR 73 (80)
T ss_dssp CCCCCCCCCCCCCCSC--BCTTTCCBCCS--SCEEETTEEECTTTCBCSSSCCBS-CSSCCEESSSCEECHHHHHHHH
T ss_pred CCCccchhHHhhhcCC--ccccCCCeecc--eeEEECCCeEecCcCChhhCCCCC-CCCcEEeECCEEECHHHHHHHc
Confidence 4789999999999998 99999999976 578999999999999999999999 5557999999999999999884
No 15
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.79 E-value=5.5e-20 Score=116.12 Aligned_cols=74 Identities=28% Similarity=0.521 Sum_probs=67.0
Q ss_pred CccccccceecccccccccccccccccCCceEEecCCcccccCccccccCCcccccCCeEEE-eCCeeccHHhHHHHhh
Q psy7479 66 NLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYL-CDNKILCEYDYEERQV 143 (170)
Q Consensus 66 ~~~yC~~c~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~-~~~~~~C~~c~~~~~~ 143 (170)
+.+||+.||.+++++ +|.+|+++|. +.+|.+.++.||++||+|..|+++|..+..|++ .++++||+.||.+++.
T Consensus 2 ~~~yC~~~y~~~~~~--~C~~C~~~I~--~~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~ 76 (81)
T 1x6a_A 2 SSGSSGKDYWGKFGE--FCHGCSLLMT--GPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVS 76 (81)
T ss_dssp CCCCCCCCSSCCSSC--BCTTTCCBCC--SCCBCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHC
T ss_pred CCccchhHHhhhcCC--cCccCCCCcC--ceEEEECCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhc
Confidence 678999999999998 9999999997 478899999999999999999999965678884 8999999999998854
No 16
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.78 E-value=1.6e-19 Score=113.95 Aligned_cols=72 Identities=25% Similarity=0.486 Sum_probs=64.8
Q ss_pred CCccccccceecccccccccccccccccCCceEEecCCcccccCccccccCCcccccCCeEEEe-CCeeccHHhHHHHh
Q psy7479 65 ANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYEERQ 142 (170)
Q Consensus 65 ~~~~yC~~c~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~-~~~~~C~~c~~~~~ 142 (170)
+|++||++||. ++++ +|.+|+++|.+ .+|.+.++.||++||+|..|+++| .+..|+.. ++++||+.||.++|
T Consensus 2 ~g~~yC~~~y~-~~~~--~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~~L-~~~~f~~~~~g~~yC~~cy~~~f 74 (81)
T 2dlo_A 2 SSGSSGEGCYV-ATLE--KCATCSQPILD--RILRAMGKAYHPGCFTCVVCHRGL-DGIPFTVDATSQIHCIEDFHRKF 74 (81)
T ss_dssp CCCCCCCCCCC-SSCC--BCTTTCCBCCS--CCEEETTEEECTTTCBCSSSCCBC-TTSCEECCTTCCCEEHHHHHHHT
T ss_pred cCCEECHHHhh-cCCC--ccccCCCeecc--eeEEECCccccHHhcCcccCCCcc-CCCeeEECCCCEEECHHHHHHHh
Confidence 68999999999 6776 99999999974 688999999999999999999999 57778876 78999999999874
No 17
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.73 E-value=2.5e-18 Score=108.26 Aligned_cols=70 Identities=33% Similarity=0.610 Sum_probs=62.4
Q ss_pred CCCCCcccccccccccccceeEEeCCccccccCccccccccccccCCCeeEEeCCccccccceeccccccccccc
Q psy7479 12 GASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAA 86 (170)
Q Consensus 12 ~~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~~~~~C~~ 86 (170)
....+.++|.+|+++|...+.+.++++.||++||+|..|+++|. + .|+.+++++||+.||.++|++ +|..
T Consensus 10 ~~~~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~--~-~~~~~~g~~yC~~~y~~~fg~--~C~~ 79 (80)
T 2dj7_A 10 IKIRGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILT--G-EYISKDGVPYCESDYHAQFGS--GPSS 79 (80)
T ss_dssp CCCSSCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCS--S-CCEEETTEEECTTHHHHHTTC--CSTT
T ss_pred cCCCCCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcC--C-CeEEECCEEECHHHHHHHcCC--CCCC
Confidence 44667889999999999776789999999999999999999997 2 489999999999999999998 8853
No 18
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.72 E-value=2.4e-18 Score=107.28 Aligned_cols=71 Identities=23% Similarity=0.412 Sum_probs=63.8
Q ss_pred ccccccccccccceeEEeCCccccccCccccccccccccCCCeeEEeCCccccc-cceeccccccccccccccccc
Q psy7479 18 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCK-RDYLRLFGTTGYCAACTKVIP 92 (170)
Q Consensus 18 ~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~yC~-~c~~~~~~~~~~C~~C~~~i~ 92 (170)
++|.+|+++|..++.+.++++.||++||+|..|+++|.. ..|+.++|++||+ .||.++|++ +|.+|++.+.
T Consensus 1 p~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~--~~~~~~~g~~yC~~~cy~~~f~~--~C~~C~~~~~ 72 (76)
T 1iml_A 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTS--GGHAEHEGKPYCNHPCYSAMFGP--KGFGRGGAES 72 (76)
T ss_dssp CBCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCT--TTEEEETTEEEETTTHHHHHSSC--CCSSCCCSSS
T ss_pred CcCCCCCCEEECceEEEECCccccCCCCCccccCccCCC--CceECcCCeEeeCHHHHHHHhCc--cCCCcCCcee
Confidence 579999999996667899999999999999999999973 4689999999999 699999998 9999997663
No 19
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.72 E-value=3e-18 Score=108.10 Aligned_cols=72 Identities=31% Similarity=0.581 Sum_probs=62.5
Q ss_pred CccccccceecccccccccccccccccCCceEEecCCcccccCccccccCCcccccCCeEEEeCCeeccHHhHHHH
Q psy7479 66 NLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEER 141 (170)
Q Consensus 66 ~~~yC~~c~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~ 141 (170)
+.+||+.||.++|++ +|.+|+++|.+ .+|.+.++.||++||+|..|+++|..+..|...++.+||..||.++
T Consensus 2 ~~~yC~~dy~~~~~~--~C~~C~~~I~~--~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~ 73 (81)
T 1v6g_A 2 SSGSSGLDYQRLYGT--RCFSCDQFIEG--EVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPV 73 (81)
T ss_dssp CCCCCCSCGGGSCCC--BCTTTCCBCCS--CCEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCC
T ss_pred CCCcchHHHHhHhCC--cCccccCEecc--ceEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhccc
Confidence 468999999999998 99999999975 6889999999999999999999995555565556678999999654
No 20
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.70 E-value=2.9e-18 Score=108.14 Aligned_cols=74 Identities=20% Similarity=0.401 Sum_probs=55.6
Q ss_pred CCCcccccccccccccceeEEeCCccccccCccccccccccccCCCeeEEeCCccccccceecccccccccccccccc
Q psy7479 14 SGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVI 91 (170)
Q Consensus 14 ~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~~~~~C~~C~~~i 91 (170)
....++|.+|+++|...+.+.++++.||++||+|..|+++|.. ..|+.+++++||+.||.++|++ +|.+|+...
T Consensus 4 ~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~--~~~~~~~~~~yC~~cy~~~f~~--~c~gcg~g~ 77 (81)
T 1a7i_A 4 WGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDS--TTVAIHDAEVYCKSCYGKKYGP--KGYGYGQGA 77 (81)
T ss_dssp ----CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECS--SCCEEETTEEECSHHHHHHCC------------
T ss_pred CCCCCcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCC--CCeEeeCCEEECHHHHHHHhCC--cccccCCcc
Confidence 3456899999999986667899999999999999999999973 4589999999999999999998 999998643
No 21
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.69 E-value=1.8e-17 Score=103.26 Aligned_cols=69 Identities=23% Similarity=0.542 Sum_probs=62.2
Q ss_pred Cccccccccccccc---ceeEEeCCccccccCccccccccccccCCCeeEEeCCccccccceeccccccccccccc
Q psy7479 16 GLKECASCGKRITE---RFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACT 88 (170)
Q Consensus 16 ~~~~C~~C~~~I~~---~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~~~~~C~~C~ 88 (170)
..++|.+|+++|.+ ..++.++++.||++||+|..|+++|. +..|+.+++++||+.||.++|++ +|..++
T Consensus 4 ~~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~--~~~f~~~~g~~yC~~cy~~~f~~--~C~~~s 75 (76)
T 1x68_A 4 GSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLV--GKGFLTQNKEIFCQKCGSGMDTD--ISGPSS 75 (76)
T ss_dssp CCCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCS--SSCEEEETTEEEETTTTCCCCCC--SSSSSC
T ss_pred cCCCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCC--CCceEeECCEEECHHHhhhhhCC--cCCCCC
Confidence 46789999999996 35789999999999999999999997 45699999999999999999998 998765
No 22
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.69 E-value=2.3e-17 Score=105.89 Aligned_cols=68 Identities=19% Similarity=0.446 Sum_probs=60.2
Q ss_pred CCCCcccccccccccccceeEEeCCccccccCccccccccccccCCCeeEEeCCccccccceecccccccccc
Q psy7479 13 ASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCA 85 (170)
Q Consensus 13 ~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~~~~~C~ 85 (170)
......+|.+|+++|.+. ++.++++.||++||+|..|++.|.. ..|+.+++++||+.||.++|++ ++.
T Consensus 21 ~~~~~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~~--~~~~~~~g~~yC~~~y~~~f~p--~~~ 88 (89)
T 1x64_A 21 SAQRMPLCDKCGSGIVGA-VVKARDKYRHPECFVCADCNLNLKQ--KGYFFVEGELYCETHARARTSG--PSS 88 (89)
T ss_dssp CCCSCCBCTTTCCBCCSC-CEESSSCEECTTTCCCSSSCCCTTT--SCCEEETTEEECHHHHHHHSSS--CCC
T ss_pred CCCcCCCcccCCCEeccc-EEEECCceECccCCEecCCCCCCCC--CCeEeECCEEECHHHHHHHhCC--CCC
Confidence 445678999999999986 6889999999999999999999973 4589999999999999999998 654
No 23
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=2.7e-17 Score=103.96 Aligned_cols=73 Identities=18% Similarity=0.320 Sum_probs=61.9
Q ss_pred CCCCCCCCCCCcccccccccccccceeEEeCCccccccCccccccccccccCCCeeE--EeCCccccccceeccccc
Q psy7479 6 QGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLY--QKANLILCKRDYLRLFGT 80 (170)
Q Consensus 6 ~~~~~~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~--~~~~~~yC~~c~~~~~~~ 80 (170)
.+++++....+..+|.+|+++|...+.+.++++.||++||+|..|++.|.. ..|+ .++|++||+.||.+++.+
T Consensus 4 ~~~~~~~~~~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~--~~~~~~~~~g~~yC~~~y~~~~~~ 78 (82)
T 2co8_A 4 GSSGQHQEAGAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWP--GGYEQHPGDGHFYCLQHLPQTDSG 78 (82)
T ss_dssp CCCCCCCCCCSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCT--TSEECCTTTCCCEETTTCCCCCCC
T ss_pred CCCCCCcCCCCCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCC--CceeEeCcCCEEEChHHHHhhhcC
Confidence 455556667788999999999987767889999999999999999999973 4465 479999999999998875
No 24
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=2.1e-17 Score=106.23 Aligned_cols=68 Identities=22% Similarity=0.471 Sum_probs=60.5
Q ss_pred CCCCcccccccccccccceeEEeCCccccccCccccccccccccCCCeeEEeCCccccccceecccccccccc
Q psy7479 13 ASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCA 85 (170)
Q Consensus 13 ~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~~~~~C~ 85 (170)
.....++|.+|+++|.+. .+.++++.||++||+|..|+++|.. ..|+.+++++||+.||.++|++ +|.
T Consensus 21 ~~~~~~~C~~C~~~I~~~-~v~a~~~~~H~~CF~C~~C~~~L~~--~~f~~~~g~~yC~~cy~~~f~~--~c~ 88 (90)
T 2dar_A 21 AGKRTPMCAHCNQVIRGP-FLVALGKSWHPEEFNCAHCKNTMAY--IGFVEEKGALYCELCYEKFFAS--GPS 88 (90)
T ss_dssp TTTCCCBBSSSCCBCCSC-EEEETTEEECTTTCBCSSSCCBCSS--SCBEESSSCEECHHHHHHHTSC--CCC
T ss_pred CCCCCCCCccCCCEecce-EEEECCccccccCCccCCCCCCCCC--CEeEeECCEEECHHHHHHHcCC--CCC
Confidence 345678999999999866 6789999999999999999999973 5689999999999999999998 885
No 25
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=2.5e-17 Score=102.56 Aligned_cols=68 Identities=26% Similarity=0.485 Sum_probs=60.6
Q ss_pred CCcccccccccccccceeEEeCCccccccCccccccccccccCCCeeEEeCCccccc-cceeccccccccccc
Q psy7479 15 GGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCK-RDYLRLFGTTGYCAA 86 (170)
Q Consensus 15 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~yC~-~c~~~~~~~~~~C~~ 86 (170)
...++|.+|+++|...+.+.++++.||++||+|..|+++|. +..|+.+++++||+ .||.++|++ +|.+
T Consensus 7 ~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~--~~~~~~~~g~~yC~~~cy~~~f~~--kc~g 75 (76)
T 2cu8_A 7 GMASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLT--PGGHAEHDGKPFCHKPCYATLFGS--GPSS 75 (76)
T ss_dssp CCCCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCC--TTSCEEETTEEECTTTHHHHHSCS--SCSC
T ss_pred CCCCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccC--CCceEeECCEEecchHHHHHhccc--ccCC
Confidence 45689999999999666788999999999999999999997 35689999999999 799999998 8853
No 26
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=7.9e-17 Score=99.21 Aligned_cols=63 Identities=27% Similarity=0.495 Sum_probs=56.8
Q ss_pred ccccccccccccccccCCceEEecCCcccccCccccccCCcccccCCeEEEeCCeeccHHhHHHHh
Q psy7479 77 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQ 142 (170)
Q Consensus 77 ~~~~~~~C~~C~~~i~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~ 142 (170)
++++ +|.+|+++|.+.+.++.+.++.||++||+|..|+++| .+..|+..++++||+.||.+++
T Consensus 3 ~~~~--~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~~~~yC~~cy~~~f 65 (72)
T 1x4k_A 3 SGSS--GCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPI-GTKSFIPKDNQNFCVPCYEKQH 65 (72)
T ss_dssp SCCC--CBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCC-CSSSEEEETTEEEEHHHHHHHT
T ss_pred ccCC--CCccCCCcccCCceEEEECcCeecccCCcccccCCcc-CCCccCccCCeEECHHHHhHHh
Confidence 4666 9999999998766789999999999999999999999 5668999999999999999873
No 27
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=2.2e-17 Score=100.99 Aligned_cols=67 Identities=25% Similarity=0.538 Sum_probs=60.3
Q ss_pred CCcccccccccccccceeEEeCCccccccCccccccccccccCCCeeEEeCCccccccceeccccccccccc
Q psy7479 15 GGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAA 86 (170)
Q Consensus 15 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~~~~~C~~ 86 (170)
...++|.+|+++|.+. .+.++++.||++||+|..|+++|. +..|+.+++++||+.||.++|++ +|.+
T Consensus 3 ~~~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~--~~~~~~~~~~~yC~~cy~~~f~~--~C~g 69 (69)
T 2cur_A 3 SGSSGCVKCNKAITSG-GITYQDQPWHADCFVCVTCSKKLA--GQRFTAVEDQYYCVDCYKNFVSG--PSSG 69 (69)
T ss_dssp CCCCCCSSSCCCCCTT-CEEETTEEECTTTTBCTTTCCBCT--TSCEEECSSCEEEHHHHHHHHTC--SCCC
T ss_pred CCcCCCcccCCEeCcc-eEEECccccccCcCEECCCCCCCC--CCccEeECCEEECHHHhHHHhcC--CCCC
Confidence 4568999999999986 588999999999999999999997 45699999999999999999998 8864
No 28
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=1.2e-17 Score=104.89 Aligned_cols=65 Identities=22% Similarity=0.447 Sum_probs=58.7
Q ss_pred CCCCcccccccccccccceeEEeCCccccccCccccccccccccCCCeeEEeCCccccccceeccccc
Q psy7479 13 ASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGT 80 (170)
Q Consensus 13 ~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~~ 80 (170)
.....++|.+|+++|.+. ++.++++.||++||+|..|++.|.. ..|+.+++++||+.||.++|++
T Consensus 11 ~~~~~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~~--~~~~~~~g~~yC~~cy~~~~~p 75 (79)
T 1x62_A 11 NAQKLPMCDKCGTGIVGV-FVKLRDRHRHPECYVCTDCGTNLKQ--KGHFFVEDQIYCEKHARERVSG 75 (79)
T ss_dssp CCCCCCCCSSSCCCCCSS-CEECSSCEECTTTTSCSSSCCCHHH--HCCEESSSCEECHHHHHHHHSS
T ss_pred CCCCCCccccCCCCccCc-EEEECcceeCcCcCeeCCCCCCCCC--CCeEeECCEEECHHHHHHHhCC
Confidence 446678999999999987 6899999999999999999999973 4589999999999999999997
No 29
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=1.4e-16 Score=98.12 Aligned_cols=64 Identities=19% Similarity=0.376 Sum_probs=57.0
Q ss_pred cccccccccccccccccCCceEEecCCcccccCccccccCCcccccCCeEEEeCCeeccHHhHHHHh
Q psy7479 76 RLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQ 142 (170)
Q Consensus 76 ~~~~~~~~C~~C~~~i~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~ 142 (170)
+++++ +|.+|+++|.+.+.++.+.++.||++||+|..|+++| .+..|+..++++||+.||.+++
T Consensus 2 ~~~~~--~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~~~~yC~~cy~~~f 65 (72)
T 1wyh_A 2 SSGSS--GCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPL-GSRSFVPDKGAHYCVPCYENKF 65 (72)
T ss_dssp CCCCC--BCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBT-TTSCEEEETTEEEEHHHHHHHT
T ss_pred CccCC--CCccCCCccccCccEEEECccccCcccCeECCCCCcC-CCCccCCcCCeEECHHHHHHHc
Confidence 34566 9999999998656789999999999999999999999 5667999999999999999874
No 30
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=4.3e-17 Score=99.89 Aligned_cols=66 Identities=23% Similarity=0.570 Sum_probs=59.6
Q ss_pred CCcccccccccccccceeEEeCCccccccCccccccccccccCCCeeEEeCCccccccceecccccccccc
Q psy7479 15 GGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCA 85 (170)
Q Consensus 15 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~~~~~C~ 85 (170)
...++|.+|+++|.+. .+.++++.||++||+|..|+++|. +..|+.+++++||+.||.++|++ +|.
T Consensus 3 ~~~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~--~~~~~~~~~~~yC~~cy~~~f~~--~c~ 68 (70)
T 2d8z_A 3 SGSSGCVQCKKPITTG-GVTYREQPWHKECFVCTACRKQLS--GQRFTARDDFAYCLNCFCDLYAS--GPS 68 (70)
T ss_dssp CCCCBCSSSCCBCCSS-EEESSSSEEETTTSBCSSSCCBCT--TSCCEESSSSEECHHHHHHHTCC--CCT
T ss_pred CCCCCCcccCCeeccc-eEEECccccCCCCCccCCCCCcCC--cCceEeeCCeEECHHHHHHHhcc--ccC
Confidence 4568899999999987 488999999999999999999997 35689999999999999999998 885
No 31
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=5.5e-17 Score=99.96 Aligned_cols=64 Identities=27% Similarity=0.554 Sum_probs=57.7
Q ss_pred CCccccccccccccc---ceeEEeCCccccccCccccccccccccCCCeeEEeCCccccccceeccccc
Q psy7479 15 GGLKECASCGKRITE---RFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGT 80 (170)
Q Consensus 15 ~~~~~C~~C~~~I~~---~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~~ 80 (170)
...++|.+|+++|.+ ..++.++++.||++||+|..|+++|. +..|+.+++++||+.||.++|+|
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~--~~~f~~~~g~~yC~~c~~~~~~p 69 (72)
T 1x4l_A 3 SGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLV--GRGFLTERDDILCPDCGKDISGP 69 (72)
T ss_dssp SCSCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCT--TSCCEECSSSEECHHHHHTCCCS
T ss_pred CCCCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCC--CCccEeECCEEEChhHcCcccCC
Confidence 457899999999996 35789999999999999999999997 45688999999999999999987
No 32
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.65 E-value=4.6e-17 Score=110.44 Aligned_cols=66 Identities=50% Similarity=1.188 Sum_probs=58.6
Q ss_pred CCCcccccccccccccceeEEeCCccccccCccccccccccccCCCeeEEeCCccccccceecccc
Q psy7479 14 SGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 79 (170)
Q Consensus 14 ~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~ 79 (170)
....++|.+|+++|.+.+++.++++.||+.||+|..|+++|.+.+..|+.++|++||+.||.++|+
T Consensus 58 ~~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 58 GLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp CSSCSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred CccCCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence 445789999999999987799999999999999999999996334568999999999999998875
No 33
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=6.3e-17 Score=104.20 Aligned_cols=70 Identities=23% Similarity=0.423 Sum_probs=61.9
Q ss_pred CCCcccccccccccccceeEEeCCccccccCccccccccccccCCCeeEEeCCccccccceecccccccccccc
Q psy7479 14 SGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAAC 87 (170)
Q Consensus 14 ~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~~~~~C~~C 87 (170)
....++|.+|+++|.+.+.+.++++.||++||+|..|+++|.. ..|+.+++++||+.||.++|++ +|..+
T Consensus 12 ~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~--~~~~~~~g~~yC~~~y~~~f~~--kc~~~ 81 (91)
T 2d8y_A 12 APARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSL--GTYASLHGRIYCKPHFNQLFKS--KGNYD 81 (91)
T ss_dssp SSSSCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCT--TTCCCSSSCCCCHHHHHHHSCC--CSCCC
T ss_pred CCCCCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCC--CCcEeECCEEECHHHHHHHhCC--CcCcc
Confidence 3457899999999998767899999999999999999999974 3489999999999999999998 88643
No 34
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=8.2e-17 Score=99.51 Aligned_cols=64 Identities=25% Similarity=0.469 Sum_probs=56.6
Q ss_pred ccccccccccccccccCCceEEecCCcccccCccccccCCcccccCCeEEEeCCeeccHHhHHHHhhh
Q psy7479 77 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVF 144 (170)
Q Consensus 77 ~~~~~~~C~~C~~~i~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~ 144 (170)
++++ +|.+|+++|.+ .+|.++++.||++||+|..|+++|..+..|+..++++||..||.+++..
T Consensus 3 ~~~~--~C~~C~~~I~~--~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~~ 66 (73)
T 1wig_A 3 SGSS--GCDSCEKYITG--RVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTE 66 (73)
T ss_dssp CSCC--SCSSSCCCCSS--CCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSSS
T ss_pred cCcC--CcccCCCEecC--eeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhcc
Confidence 4566 99999999976 6889999999999999999999995478899999999999999887543
No 35
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=7.8e-17 Score=99.24 Aligned_cols=66 Identities=24% Similarity=0.488 Sum_probs=59.7
Q ss_pred Ccccccccccccccc-eeEEeCCccccccCccccccccccccCCCeeEEeCCccccccceecccccccccc
Q psy7479 16 GLKECASCGKRITER-FLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCA 85 (170)
Q Consensus 16 ~~~~C~~C~~~I~~~-~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~~~~~C~ 85 (170)
..++|.+|+++|.+. .++.++++.||++||+|..|+++|.. ..|+.+++++||+.||.++|++ +|.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~--~~~~~~~~~~yC~~cy~~~f~~--~C~ 70 (72)
T 1x4k_A 4 GSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGT--KSFIPKDNQNFCVPCYEKQHAS--GPS 70 (72)
T ss_dssp CCCCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCS--SSEEEETTEEEEHHHHHHHTSS--CCC
T ss_pred cCCCCccCCCcccCCceEEEECcCeecccCCcccccCCccCC--CccCccCCeEECHHHHhHHhCC--CCC
Confidence 457899999999975 57899999999999999999999973 4689999999999999999998 885
No 36
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=7.3e-17 Score=99.37 Aligned_cols=66 Identities=24% Similarity=0.533 Sum_probs=59.6
Q ss_pred Ccccccccccccccc-eeEEeCCccccccCccccccccccccCCCeeEEeCCccccccceecccccccccc
Q psy7479 16 GLKECASCGKRITER-FLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCA 85 (170)
Q Consensus 16 ~~~~C~~C~~~I~~~-~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~~~~~C~ 85 (170)
..++|.+|+++|... .++.++++.||++||+|..|+++|.. ..|+.+++++||+.||.++|++ +|.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~--~~~~~~~~~~yC~~cy~~~f~~--~C~ 70 (72)
T 1wyh_A 4 GSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGS--RSFVPDKGAHYCVPCYENKFAS--GPS 70 (72)
T ss_dssp CCCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTT--SCEEEETTEEEEHHHHHHHTSC--CCC
T ss_pred cCCCCccCCCccccCccEEEECccccCcccCeECCCCCcCCC--CccCCcCCeEECHHHHHHHccC--cCC
Confidence 467899999999964 67899999999999999999999973 4689999999999999999998 885
No 37
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.65 E-value=1.3e-16 Score=98.09 Aligned_cols=64 Identities=25% Similarity=0.584 Sum_probs=56.6
Q ss_pred cccccccccccccccccCCceEEecCCcccccCccccccCCcccccCCeEEEeCCeeccHHhHHHHh
Q psy7479 76 RLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQ 142 (170)
Q Consensus 76 ~~~~~~~~C~~C~~~i~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~ 142 (170)
..+++ +|.+|+++|.+.+.++.+.++.||++||+|..|+++|.. ..|+..+|++||+.||.++|
T Consensus 8 ~~~~~--~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~-~~~~~~~g~~yC~~~y~~lf 71 (72)
T 3f6q_B 8 GSASA--TCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPE-GLFYEFEGRKYCEHDFQMLF 71 (72)
T ss_dssp CCTTC--BCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGG-GCCEEETTEEECHHHHHHHT
T ss_pred CcCCc--cchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCC-CCeEeECCeEeCHHHHHHhh
Confidence 35555 999999999987778899999999999999999999944 47889999999999999874
No 38
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=1.7e-16 Score=97.78 Aligned_cols=60 Identities=25% Similarity=0.595 Sum_probs=55.5
Q ss_pred ccccccccccCCceEEecCCcccccCccccccCCcccccCCeEEEeCCeeccHHhHHHHhh
Q psy7479 83 YCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQV 143 (170)
Q Consensus 83 ~C~~C~~~i~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~ 143 (170)
+|.+|+++|.+.+.++.+.++.||++||+|..|+++| .+..|+..++++||+.||.+++.
T Consensus 7 ~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 7 GCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQL-RGQHFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp CCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBC-TTSCEEESSSCEEEHHHHHHHHH
T ss_pred CCccCCCccCCCceEEEECCCeEcccCCcccccCCcC-CcCcCEeeCCeEECHHHHHHHHc
Confidence 9999999998766789999999999999999999999 77889999999999999998853
No 39
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=5.6e-17 Score=101.19 Aligned_cols=68 Identities=19% Similarity=0.461 Sum_probs=58.6
Q ss_pred CCCccccccccccccc-ceeEEeCCccccccCccccccccccccCCCeeEEeCCccccccceecccccccccc
Q psy7479 14 SGGLKECASCGKRITE-RFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCA 85 (170)
Q Consensus 14 ~~~~~~C~~C~~~I~~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~~~~~C~ 85 (170)
....++|.+|+++|.. +.++.++|+.||++||+|..|+++|.. ..|+.++|++||+.||.++|++ +|.
T Consensus 8 ~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~--~~~~~~~g~~yC~~~y~~~f~~--~C~ 76 (77)
T 1g47_A 8 ALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPE--GLFYEFEGRKYCEHDFQMLFAP--CWI 76 (77)
T ss_dssp CCCCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGG--GCSEEETTEEECHHHHHHHCCC--C--
T ss_pred CCCCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCC--CCeEeECCeEeCHHHHHHHhhc--ccC
Confidence 3456899999999984 456889999999999999999999974 3589999999999999999998 875
No 40
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=7.5e-17 Score=100.43 Aligned_cols=64 Identities=25% Similarity=0.510 Sum_probs=57.0
Q ss_pred cccccccccccccccccC--CceEEecCCcccccCccccccCCcccccCCeEEEeCCeeccHHhHHHHh
Q psy7479 76 RLFGTTGYCAACTKVIPA--FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQ 142 (170)
Q Consensus 76 ~~~~~~~~C~~C~~~i~~--~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~ 142 (170)
+++++ +|.+|+++|.+ .+.++.+.++.||++||+|..|+++| .+..|+..++++||+.||.+++
T Consensus 2 ~~~~~--~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L-~~~~f~~~~g~~yC~~cy~~~f 67 (76)
T 1x68_A 2 SSGSS--GCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSL-VGKGFLTQNKEIFCQKCGSGMD 67 (76)
T ss_dssp TTCCC--CCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBC-SSSCEEEETTEEEETTTTCCCC
T ss_pred CccCC--CCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcC-CCCceEeECCEEECHHHhhhhh
Confidence 35666 99999999985 55789999999999999999999999 6788999999999999998773
No 41
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.64 E-value=1.6e-16 Score=96.21 Aligned_cols=61 Identities=30% Similarity=0.630 Sum_probs=54.8
Q ss_pred ccccccccccccccccCCceEEecCCcccccCccccccCCcccccCCeEEEeCCeeccHHhHHHHh
Q psy7479 77 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQ 142 (170)
Q Consensus 77 ~~~~~~~C~~C~~~i~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~ 142 (170)
++++ +|.+|+++|.+ .++.+.++.||++||+|..|+++| .+..|+..++++||+.||.++|
T Consensus 3 ~~~~--~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~g~~yC~~~y~~~f 63 (66)
T 1nyp_A 3 MGVP--ICGACRRPIEG--RVVNAMGKQWHVEHFVCAKCEKPF-LGHRHYERKGLAYCETHYNQLF 63 (66)
T ss_dssp CCCC--EETTTTEECCS--CEECCTTSBEETTTCBCTTTCCBC-SSSCCEEETTEEECHHHHHHHC
T ss_pred cCCC--CCcccCCEecc--eEEEECccccccCcCEECCCCCCC-CCCceEeECCcEECHHHHHHHh
Confidence 3555 99999999984 688999999999999999999999 6778999999999999999874
No 42
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.9e-16 Score=100.01 Aligned_cols=67 Identities=24% Similarity=0.443 Sum_probs=59.6
Q ss_pred Ccccccccccccc-cceeEEeCCccccccCccccccccccccCCCeeEEeCCccccccceeccccccccccc
Q psy7479 16 GLKECASCGKRIT-ERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAA 86 (170)
Q Consensus 16 ~~~~C~~C~~~I~-~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~~~~~C~~ 86 (170)
..++|.+|+++|. +..++.++++.||++||+|..|+++|. +..|+.+++++||+.||.+++++ +|..
T Consensus 14 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~--~~~f~~~~~~~~C~~c~~~~~~~--~C~~ 81 (82)
T 2ehe_A 14 FANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLA--DEPFTCQDSELLCNDCYCSAFSS--GPSS 81 (82)
T ss_dssp CSCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCS--SCCEEEETTEEEETTTSSCCGGG--SSCC
T ss_pred cCCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccC--CCccEeeCCEEECHHHHhhhcCC--CCCC
Confidence 4578999999999 456788999999999999999999997 35689999999999999999998 8853
No 43
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.63 E-value=3.8e-16 Score=100.31 Aligned_cols=71 Identities=23% Similarity=0.344 Sum_probs=60.2
Q ss_pred ccccccceecccccccccccccccccCCceEEecCCcccccCccccccCCcccccCCeEEEeCCeeccHHhHHHHh
Q psy7479 67 LILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQ 142 (170)
Q Consensus 67 ~~yC~~c~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~ 142 (170)
....+..+...+.+ +|.+|+++|.+ .+|.+.++.||++||+|..|+++| .+..|+..++++||+.||.++|
T Consensus 13 ~~~~~~~~~~~~~~--~C~~C~~~I~~--~~v~a~~~~~H~~CF~C~~C~~~L-~~~~f~~~~g~~yC~~cy~~~f 83 (90)
T 2dar_A 13 VQRAEHIPAGKRTP--MCAHCNQVIRG--PFLVALGKSWHPEEFNCAHCKNTM-AYIGFVEEKGALYCELCYEKFF 83 (90)
T ss_dssp CBCCEEECTTTCCC--BBSSSCCBCCS--CEEEETTEEECTTTCBCSSSCCBC-SSSCBEESSSCEECHHHHHHHT
T ss_pred hhhcccCCCCCCCC--CCccCCCEecc--eEEEECCccccccCCccCCCCCCC-CCCEeEeECCEEECHHHHHHHc
Confidence 33444455666776 99999999964 688999999999999999999999 5678999999999999999874
No 44
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.63 E-value=1.1e-16 Score=97.01 Aligned_cols=62 Identities=29% Similarity=0.737 Sum_probs=56.3
Q ss_pred CcccccccccccccceeEEeCCccccccCccccccccccccCCCeeEEeCCccccccceeccccc
Q psy7479 16 GLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGT 80 (170)
Q Consensus 16 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~~ 80 (170)
..++|.+|+++|.+. .+.++++.||++||+|..|+++|. +..|+.++|++||+.||.++|++
T Consensus 4 ~~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~--~~~~~~~~g~~yC~~~y~~~f~~ 65 (66)
T 1nyp_A 4 GVPICGACRRPIEGR-VVNAMGKQWHVEHFVCAKCEKPFL--GHRHYERKGLAYCETHYNQLFGD 65 (66)
T ss_dssp CCCEETTTTEECCSC-EECCTTSBEETTTCBCTTTCCBCS--SSCCEEETTEEECHHHHHHHCSC
T ss_pred CCCCCcccCCEecce-EEEECccccccCcCEECCCCCCCC--CCceEeECCcEECHHHHHHHhCC
Confidence 468899999999955 689999999999999999999997 35689999999999999999986
No 45
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.62 E-value=1.6e-16 Score=97.88 Aligned_cols=68 Identities=24% Similarity=0.559 Sum_probs=59.2
Q ss_pred CCcccccccccccccc-eeEEeCCccccccCccccccccccccCCCeeEEeCCccccccceecccccccccccc
Q psy7479 15 GGLKECASCGKRITER-FLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAAC 87 (170)
Q Consensus 15 ~~~~~C~~C~~~I~~~-~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~~~~~C~~C 87 (170)
...++|.+|+++|.+. .++.++++.||++||+|..|+++|. +..|+.+++++||+.||.+++. +|..+
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~--~~~~~~~~~~~yC~~cy~~~~~---~~~~~ 71 (72)
T 1x61_A 3 SGSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLR--GQHFYAVERRAYCEGCYVATLE---SGPSS 71 (72)
T ss_dssp SCCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCT--TSCEEESSSCEEEHHHHHHHHH---TCSSC
T ss_pred CCCCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCC--cCcCEeeCCeEECHHHHHHHHc---cCCCC
Confidence 4568999999999974 5789999999999999999999996 4669999999999999999886 56543
No 46
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.62 E-value=2.3e-16 Score=97.13 Aligned_cols=59 Identities=27% Similarity=0.569 Sum_probs=54.0
Q ss_pred ccccccccccC--CceEEecCCcccccCccccccCCcccccCCeEEEeCCeeccHHhHHHHh
Q psy7479 83 YCAACTKVIPA--FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQ 142 (170)
Q Consensus 83 ~C~~C~~~i~~--~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~ 142 (170)
+|.+|+++|.+ ++.++.+.++.||++||+|..|+++| .+..|+..++++||+.||.+++
T Consensus 7 ~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L-~~~~f~~~~g~~yC~~c~~~~~ 67 (72)
T 1x4l_A 7 GCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSL-VGRGFLTERDDILCPDCGKDIS 67 (72)
T ss_dssp SBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBC-TTSCCEECSSSEECHHHHHTCC
T ss_pred CCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcC-CCCccEeECCEEEChhHcCccc
Confidence 99999999986 55788999999999999999999999 6788999999999999998763
No 47
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.62 E-value=2.4e-16 Score=96.58 Aligned_cols=63 Identities=29% Similarity=0.632 Sum_probs=57.0
Q ss_pred CCcccccccccccccceeEEeCCccccccCccccccccccccCCCeeEEeCCccccccceeccccc
Q psy7479 15 GGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGT 80 (170)
Q Consensus 15 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~~ 80 (170)
++.++|.+|+++|.+. ++.++++.||++||+|..|+++|.. ..|+.+++++||+.||.+++++
T Consensus 3 ~~~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~~--~~f~~~~g~~yC~~c~~~~~~~ 65 (70)
T 2d8x_A 3 SGSSGCHQCGEFIIGR-VIKAMNNSWHPECFRCDLCQEVLAD--IGFVKNAGRHLCRPCHNREKAS 65 (70)
T ss_dssp CCSSBCSSSCCBCCSC-CEEETTEEECTTTSBCSSSCCBCSS--SCCEEETTEEECHHHHHHHHCC
T ss_pred CCCCcCccCCCEecce-EEEECcccccccCCEeCCCCCcCCC--CccEeECCeEECHHHhhhhcCC
Confidence 5578999999999976 6899999999999999999999974 4588999999999999999886
No 48
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.61 E-value=2.6e-16 Score=103.11 Aligned_cols=85 Identities=25% Similarity=0.388 Sum_probs=67.9
Q ss_pred ccccccccccCCceEEecCCcccccCccccccCCcccccCCeEEEeCCeeccHHhHHHHhhhccccCCCCchHHhhh--h
Q psy7479 83 YCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFANIAYNPSSLAHLRR--Q 160 (170)
Q Consensus 83 ~C~~C~~~i~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~--~ 160 (170)
+|.+|+++|.+++.++.++++.||++||+|..|+++| .+..|+..+|++||+.||.++ +.+.+......+...+ .
T Consensus 7 ~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~g~~yC~~cy~~~--~~~~C~~C~~~I~~~~~~~ 83 (101)
T 2cup_A 7 GCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPL-ANETFVAKDNKILCNKCTTRE--DSPKCKGCFKAIVAGDQNV 83 (101)
T ss_dssp BCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCT-TSSCCEEETTEEECHHHHTTC--CCCBCSSSCCBCCSSSCEE
T ss_pred cCcccCCcccCCceEEEECccChhhcCCcccccCCCC-CcCeeECcCCEEEChhHhhhh--cCCccccCCCccccCCeEE
Confidence 9999999997656789999999999999999999999 677899999999999999887 5666666555443221 1
Q ss_pred cceeeecccC
Q psy7479 161 VTLQVLWIRE 170 (170)
Q Consensus 161 ~~~~~~~~~~ 170 (170)
......||++
T Consensus 84 ~a~~~~~H~~ 93 (101)
T 2cup_A 84 EYKGTVWHKD 93 (101)
T ss_dssp ESSSCEEETT
T ss_pred EeCCcchHHh
Confidence 2345667764
No 49
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.61 E-value=4.4e-16 Score=105.67 Aligned_cols=72 Identities=53% Similarity=1.060 Sum_probs=62.4
Q ss_pred eecccccccccccccccccCCceEEecCCcccccCccccccCCcccccCCeEEEeCCeeccHHhHHHHhhhc
Q psy7479 74 YLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFA 145 (170)
Q Consensus 74 ~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~ 145 (170)
|.++|++.++|..|+++|.+.+.++.+.++.||++||+|..|+++|..+..|+..++++||..||.+++...
T Consensus 1 Y~r~fg~~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~~ 72 (123)
T 2l3k_A 1 YLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKIN 72 (123)
T ss_dssp CCSSSSSSCCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHHH
T ss_pred ChhhhCCCCcccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhccc
Confidence 456676444899999999876788899999999999999999999966778999999999999999886433
No 50
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.61 E-value=7.3e-16 Score=94.35 Aligned_cols=60 Identities=25% Similarity=0.527 Sum_probs=54.0
Q ss_pred cccccccccccccccCCceEEecCCcccccCccccccCCcccccCCeEEEeCCeeccHHhHHHHh
Q psy7479 78 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQ 142 (170)
Q Consensus 78 ~~~~~~C~~C~~~i~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~ 142 (170)
+++ +|.+|+++|.+ ..+.+.++.||++||+|..|+++| .+..|+..++++||+.||.+++
T Consensus 4 ~~~--~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~~~~yC~~cy~~~f 63 (70)
T 2d8z_A 4 GSS--GCVQCKKPITT--GGVTYREQPWHKECFVCTACRKQL-SGQRFTARDDFAYCLNCFCDLY 63 (70)
T ss_dssp CCC--BCSSSCCBCCS--SEEESSSSEEETTTSBCSSSCCBC-TTSCCEESSSSEECHHHHHHHT
T ss_pred CCC--CCcccCCeecc--ceEEECccccCCCCCccCCCCCcC-CcCceEeeCCeEECHHHHHHHh
Confidence 445 99999999975 568999999999999999999999 6778999999999999999874
No 51
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.61 E-value=4e-16 Score=94.25 Aligned_cols=58 Identities=22% Similarity=0.548 Sum_probs=53.1
Q ss_pred ccccccccccCCceEEecCCcccc--cCccccccCCcccccCCeEEEeCCeecc-HHhHHHH
Q psy7479 83 YCAACTKVIPAFEMVMRAKNNVYH--LECFACQQCNHRFCVGDRFYLCDNKILC-EYDYEER 141 (170)
Q Consensus 83 ~C~~C~~~i~~~~~~~~~~~~~~H--~~Cf~C~~C~~~l~~~~~~~~~~~~~~C-~~c~~~~ 141 (170)
+|.+|+++|.+.+..|.+.++.|| ++||+|..|+++| .+..|+..+|++|| ..||.++
T Consensus 4 ~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L-~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCL-IGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp ECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBC-TTSCCEEETTEEESSHHHHHTT
T ss_pred CCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcC-CCCceEEECCEEecCHHHhhhh
Confidence 899999999865578999999999 9999999999999 67889999999999 9998754
No 52
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=7.2e-16 Score=94.14 Aligned_cols=58 Identities=24% Similarity=0.639 Sum_probs=53.0
Q ss_pred ccccccccccCCceEEecCCcccccCccccccCCcccccCCeEEEeCCeeccHHhHHHHhh
Q psy7479 83 YCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQV 143 (170)
Q Consensus 83 ~C~~C~~~i~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~ 143 (170)
+|.+|+++|.+ ..+.+.++.||++||+|..|+++| .+..|++.++++||+.||.+++.
T Consensus 7 ~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~~~~yC~~cy~~~f~ 64 (69)
T 2cur_A 7 GCVKCNKAITS--GGITYQDQPWHADCFVCVTCSKKL-AGQRFTAVEDQYYCVDCYKNFVS 64 (69)
T ss_dssp CCSSSCCCCCT--TCEEETTEEECTTTTBCTTTCCBC-TTSCEEECSSCEEEHHHHHHHHT
T ss_pred CCcccCCEeCc--ceEEECccccccCcCEECCCCCCC-CCCccEeECCEEECHHHhHHHhc
Confidence 99999999975 468899999999999999999999 67789999999999999998743
No 53
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=4.3e-16 Score=97.12 Aligned_cols=59 Identities=27% Similarity=0.672 Sum_probs=53.8
Q ss_pred ccccccccccCCceEEecCCcccccCccccccCCcccccCCeEEEeCCeeccHHhHHHHh
Q psy7479 83 YCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQ 142 (170)
Q Consensus 83 ~C~~C~~~i~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~ 142 (170)
+|.+|+++|.+.+.++.+.++.||++||+|..|+++| .+..|+..+|++||+.||.+++
T Consensus 13 ~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~g~~yC~~~y~~~f 71 (77)
T 1g47_A 13 TCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQF-PEGLFYEFEGRKYCEHDFQMLF 71 (77)
T ss_dssp BCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCC-GGGCSEEETTEEECHHHHHHHC
T ss_pred CchhcCCccCCCceEEEeCccEeccccCeECCCCCCC-CCCCeEeECCeEeCHHHHHHHh
Confidence 9999999998767888999999999999999999999 4446899999999999999874
No 54
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=3.4e-16 Score=98.33 Aligned_cols=66 Identities=23% Similarity=0.590 Sum_probs=59.3
Q ss_pred CcccccccccccccceeEEeCCccccccCccccccccccccCCCeeEEeCCccccccceeccccccccccc
Q psy7479 16 GLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAA 86 (170)
Q Consensus 16 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~~~~~C~~ 86 (170)
..++|.+|+++|.+. .+.++++.||++||+|..|+++|.. ..|+.+++++||+.||.++|++ +|.+
T Consensus 14 ~~~~C~~C~~~I~~~-~v~a~~~~~H~~CF~C~~C~~~L~~--~~~~~~~~~~yC~~~y~~~f~~--~C~~ 79 (80)
T 1x3h_A 14 FSPKCGGCNRPVLEN-YLSAMDTVWHPECFVCGDCFTSFST--GSFFELDGRPFCELHYHHRRGS--GPSS 79 (80)
T ss_dssp CSCBCTTTCCBCCSS-CEEETTEEECTTTCBCSSSCCBSCS--SCCEESSSCEECHHHHHHHHSS--SCCC
T ss_pred cCCccccCCCeecce-eEEECCCeEecCcCChhhCCCCCCC--CcEEeECCEEECHHHHHHHcCC--CCCC
Confidence 357899999999986 5899999999999999999999973 4689999999999999999998 8863
No 55
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=5.3e-16 Score=97.28 Aligned_cols=64 Identities=19% Similarity=0.238 Sum_probs=56.5
Q ss_pred CCCCcccccccccccccceeEEeCCccccccCccccccccccccCCCeeEEeCCccccccceeccccc
Q psy7479 13 ASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGT 80 (170)
Q Consensus 13 ~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~~ 80 (170)
.....++|.+|+++|.+. .+.++++.||++||+|..|+++|.. . +|.++|++||+.||.++|++
T Consensus 11 ~~~~~~~C~~C~~~I~~~-~v~a~~~~~H~~CF~C~~C~~~L~~--~-~f~~~g~~yC~~cy~~~f~p 74 (79)
T 2cor_A 11 RGLGKYICQKCHAIIDEQ-PLIFKNDPYHPDHFNCANCGKELTA--D-ARELKGELYCLPCHDKMGVS 74 (79)
T ss_dssp CCCCCCBCTTTCCBCCSC-CCCCSSSCCCTTTSBCSSSCCBCCT--T-CEEETTEEECHHHHHTTSCC
T ss_pred hccCCCCCccCCCEecce-EEEECcceeCCCCCEeCCCCCccCC--C-CEeECCEEeCHHHHHHhCCC
Confidence 445678999999999965 5889999999999999999999973 3 46999999999999999987
No 56
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=4.1e-16 Score=98.22 Aligned_cols=67 Identities=28% Similarity=0.642 Sum_probs=58.6
Q ss_pred CCcccccccccccccceeEEeCCccccccCccccccccccccCCCeeEEe-CCccccccceeccccccccccc
Q psy7479 15 GGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQK-ANLILCKRDYLRLFGTTGYCAA 86 (170)
Q Consensus 15 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~-~~~~yC~~c~~~~~~~~~~C~~ 86 (170)
...++|.+|+++|.+. ++.++++.||++||+|..|+++|. +..|+.. +|++||+.||.++|++ +|.+
T Consensus 13 ~~~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~--~~~f~~~~~g~~yC~~cy~~~f~~--~C~~ 80 (81)
T 2dlo_A 13 ATLEKCATCSQPILDR-ILRAMGKAYHPGCFTCVVCHRGLD--GIPFTVDATSQIHCIEDFHRKFAS--GPSS 80 (81)
T ss_dssp SSCCBCTTTCCBCCSC-CEEETTEEECTTTCBCSSSCCBCT--TSCEECCTTCCCEEHHHHHHHTTS--SSCC
T ss_pred cCCCccccCCCeecce-eEEECCccccHHhcCcccCCCccC--CCeeEECCCCEEECHHHHHHHhcC--cCCC
Confidence 3578999999999976 789999999999999999999997 3456655 7899999999999998 8863
No 57
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=1.1e-15 Score=93.59 Aligned_cols=58 Identities=28% Similarity=0.552 Sum_probs=52.7
Q ss_pred ccccccccccCCceEEecCCcccccCccccccCCcccccCCeEEEeCCeeccHHhHHHHhh
Q psy7479 83 YCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQV 143 (170)
Q Consensus 83 ~C~~C~~~i~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~ 143 (170)
+|..|+++|.+ .++.+.++.||++||+|..|+++| .+..|+..++++||+.||.+++.
T Consensus 7 ~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~~L-~~~~f~~~~g~~yC~~c~~~~~~ 64 (70)
T 2d8x_A 7 GCHQCGEFIIG--RVIKAMNNSWHPECFRCDLCQEVL-ADIGFVKNAGRHLCRPCHNREKA 64 (70)
T ss_dssp BCSSSCCBCCS--CCEEETTEEECTTTSBCSSSCCBC-SSSCCEEETTEEECHHHHHHHHC
T ss_pred cCccCCCEecc--eEEEECcccccccCCEeCCCCCcC-CCCccEeECCeEECHHHhhhhcC
Confidence 89999999975 678999999999999999999999 55578889999999999998854
No 58
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=5.2e-16 Score=97.45 Aligned_cols=65 Identities=26% Similarity=0.510 Sum_probs=59.1
Q ss_pred CcccccccccccccceeEEeCCccccccCccccccccccccCCCeeEEeCCccccccceecccccccccc
Q psy7479 16 GLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCA 85 (170)
Q Consensus 16 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~~~~~C~ 85 (170)
..++|.+|+++|.+. .+.++++.||++||+|..|+++|. +..|+.+++++||+.||.++|++ +|.
T Consensus 14 ~~~~C~~C~~~I~~~-~v~a~~~~~H~~CF~C~~C~~~L~--~~~~~~~~~~~yC~~cy~~~f~~--~c~ 78 (80)
T 2cuq_A 14 FAPRCARCSKTLTQG-GVTYRDQPWHRECLVCTGCQTPLA--GQQFTSRDEDPYCVACFGELFAS--GPS 78 (80)
T ss_dssp SSCCCTTTCCCCCSC-CEESSSSEECTTTCBCSSSCCBCT--TCCEEECSSSEEEHHHHHHHTTC--STT
T ss_pred cCCcCCCCCCEecCc-EEEECCchhhhhhCCcccCCCcCC--CCeeEeECCEEECHHHHHHHcCC--CCC
Confidence 458899999999987 688999999999999999999996 35689999999999999999998 875
No 59
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.58 E-value=8.3e-16 Score=111.92 Aligned_cols=73 Identities=27% Similarity=0.552 Sum_probs=66.0
Q ss_pred CCcccccccccccccceeEEeCCccccccCccccccccccccCCCeeEEeCCccccccceecccccccccccccccc
Q psy7479 15 GGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVI 91 (170)
Q Consensus 15 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~~~~~C~~C~~~i 91 (170)
.+.++|.+|+++|.+.+.+.++++.||++||+|..|+++|.. ..|+.++|++||+.||.++|++ +|.+|++++
T Consensus 113 ~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~--~~~~~~~g~~yC~~cy~~~f~~--kc~~C~~~~ 185 (192)
T 1b8t_A 113 GGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLES--TTLADKDGEIYCKGCYAKNFGP--KGFGFGQGA 185 (192)
T ss_dssp CCCEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCS--SSEEEETTEEEEHHHHHHHTCC--CCCCCCCCC
T ss_pred CCCCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCC--CcccccCCEEeCHHHHHHhcCC--cCCCCCCcc
Confidence 346789999999997667889999999999999999999973 4589999999999999999998 999999886
No 60
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.57 E-value=2.3e-15 Score=102.44 Aligned_cols=82 Identities=21% Similarity=0.451 Sum_probs=65.1
Q ss_pred ccccccccccCCceEEecCCcccccCccccccCCcccccCCeEEEeCCeeccHHhHHHHhhhccccCCCCchHHhhh--h
Q psy7479 83 YCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFANIAYNPSSLAHLRR--Q 160 (170)
Q Consensus 83 ~C~~C~~~i~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~--~ 160 (170)
+|.+|+++|.. +.++.++|+.||++||+|..|+++| .+..|+..+|++||+.||.++ +++.+......+...+ .
T Consensus 5 ~C~~C~~~I~~-~~~~~a~~~~~H~~CF~C~~C~~~L-~~~~f~~~~g~~yC~~cy~~~--~~~~C~~C~~~I~~~~~~~ 80 (126)
T 2xqn_T 5 RCAGCDELIFS-NEYTQAENQNWHLKHFCCFDCDSIL-AGEIYVMVNDKPVCKPCYVKN--HAVVCQGCHNAIDPEVQRV 80 (126)
T ss_dssp BBTTTSSBCCS-SCEEEETTEEECGGGSBCTTTCCBC-TTSEEEEETTEEEEHHHHHHH--SCCBCTTTCSBCCTTSCEE
T ss_pred CCccCCCEeCC-ceEEeeCCCCccCCCCCcCCCCCCC-CcCEEEeECCEEechHHhCcC--cCccCcccCCcCCcCceEE
Confidence 99999999985 3578999999999999999999999 677999999999999999987 5566666544433211 1
Q ss_pred cceeeecc
Q psy7479 161 VTLQVLWI 168 (170)
Q Consensus 161 ~~~~~~~~ 168 (170)
......||
T Consensus 81 ~a~~~~~H 88 (126)
T 2xqn_T 81 TYNNFSWH 88 (126)
T ss_dssp EETTEEEE
T ss_pred ECCCCEee
Confidence 23456677
No 61
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.57 E-value=1.1e-15 Score=94.32 Aligned_cols=64 Identities=28% Similarity=0.459 Sum_probs=56.2
Q ss_pred CCcccccccccccccceeEEeCCccccccCccccccccccccCCCeeEEeCCccccccceeccccc
Q psy7479 15 GGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGT 80 (170)
Q Consensus 15 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~~ 80 (170)
...++|.+|+++|.+. ++.++++.||++||+|..|+++|.. +..|+.+++++||..||.+++..
T Consensus 3 ~~~~~C~~C~~~I~~~-~v~a~~~~wH~~CF~C~~C~~~L~~-~~~f~~~~~~~yC~~C~~~~~~~ 66 (73)
T 1wig_A 3 SGSSGCDSCEKYITGR-VLEAGEKHYHPSCALCVRCGQMFAE-GEEMYLQGSSIWHPACRQAARTE 66 (73)
T ss_dssp CSCCSCSSSCCCCSSC-CBCCSSCCBCTTTSCCSSSCCCCCS-SCCCEEETTEEECTTHHHHTSSS
T ss_pred cCcCCcccCCCEecCe-eEEeCCCCCCCCcCEeCCCCCCCCC-CCeeEeeCCEEEChHHChHhhcc
Confidence 3568999999999986 6889999999999999999999963 45689999999999999887764
No 62
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.55 E-value=4e-15 Score=92.48 Aligned_cols=58 Identities=19% Similarity=0.394 Sum_probs=52.3
Q ss_pred ccccccccccCCceEEecCCcccccCccccccCCcccccCCeEEEeCCeeccH-HhHHHHh
Q psy7479 83 YCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCE-YDYEERQ 142 (170)
Q Consensus 83 ~C~~C~~~i~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~-~c~~~~~ 142 (170)
+|.+|+++|.+. ..+.+.++.||++||+|..|+++| .+..|+..++++||+ .||.+++
T Consensus 11 ~C~~C~~~I~~~-~~v~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~g~~yC~~~cy~~~f 69 (76)
T 2cu8_A 11 KCPKCDKTVYFA-EKVSSLGKDWHKFCLKCERCSKTL-TPGGHAEHDGKPFCHKPCYATLF 69 (76)
T ss_dssp BCTTTCCBCCTT-TEEEETTEEEETTTCBCSSSCCBC-CTTSCEEETTEEECTTTHHHHHS
T ss_pred CCcCCCCEeECC-eEEEECCeEeeCCCCCCCCCCCcc-CCCceEeECCEEecchHHHHHhc
Confidence 999999999864 467899999999999999999999 577899999999999 7999874
No 63
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.55 E-value=2.1e-15 Score=95.09 Aligned_cols=66 Identities=21% Similarity=0.472 Sum_probs=58.1
Q ss_pred Ccccccccccccccc-eeEEeCCccccccCccccccccccccCCCeeEEeCCccccccceecccccccccc
Q psy7479 16 GLKECASCGKRITER-FLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCA 85 (170)
Q Consensus 16 ~~~~C~~C~~~I~~~-~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~~~~~C~ 85 (170)
..++|.+|+++|... .++.++++.||++||+|..|+++|.. ..|+.+++++||+.||.++|++ ++.
T Consensus 14 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~--~~~~~~~~~~yC~~cy~~~f~~--~~~ 80 (82)
T 1x63_A 14 DSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGT--GSFFPKGEDFYCVTCHETKFAS--GPS 80 (82)
T ss_dssp CSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTT--SCEEEETTEEEEHHHHHHHTSC--CCS
T ss_pred cCCcCccCCcccccCceEEEECccccccccCchhhCCCccCC--CccEeeCCEEECHHHHHHHhCC--CCC
Confidence 457999999999954 36889999999999999999999973 4689999999999999999998 653
No 64
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.55 E-value=1.2e-15 Score=95.67 Aligned_cols=58 Identities=22% Similarity=0.624 Sum_probs=52.9
Q ss_pred ccccccccccCCceEEecCCcccccCccccccCCcccccCCeEEEeCCeeccHHhHHHHhh
Q psy7479 83 YCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQV 143 (170)
Q Consensus 83 ~C~~C~~~i~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~ 143 (170)
+|.+|+++|.+ .+|.+.++.||++||+|..|+++| .+..|+..++++||+.||.+++.
T Consensus 17 ~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~g~~yC~~cy~~~~~ 74 (79)
T 1x62_A 17 MCDKCGTGIVG--VFVKLRDRHRHPECYVCTDCGTNL-KQKGHFFVEDQIYCEKHARERVS 74 (79)
T ss_dssp CCSSSCCCCCS--SCEECSSCEECTTTTSCSSSCCCH-HHHCCEESSSCEECHHHHHHHHS
T ss_pred ccccCCCCccC--cEEEECcceeCcCcCeeCCCCCCC-CCCCeEeECCEEECHHHHHHHhC
Confidence 99999999986 588999999999999999999999 56678999999999999998854
No 65
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.55 E-value=4.6e-15 Score=92.93 Aligned_cols=56 Identities=21% Similarity=0.477 Sum_probs=50.0
Q ss_pred ccccccccccCCceEEecCCcccccCccccccCCcccccCCeEEEeCCeeccHHhHHHHh
Q psy7479 83 YCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQ 142 (170)
Q Consensus 83 ~C~~C~~~i~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~ 142 (170)
+|.+|+++|.+ .+|.+.++.||++||+|..|+++| .+..| ..++++||+.||.+++
T Consensus 17 ~C~~C~~~I~~--~~v~a~~~~~H~~CF~C~~C~~~L-~~~~f-~~~g~~yC~~cy~~~f 72 (79)
T 2cor_A 17 ICQKCHAIIDE--QPLIFKNDPYHPDHFNCANCGKEL-TADAR-ELKGELYCLPCHDKMG 72 (79)
T ss_dssp BCTTTCCBCCS--CCCCCSSSCCCTTTSBCSSSCCBC-CTTCE-EETTEEECHHHHHTTS
T ss_pred CCccCCCEecc--eEEEECcceeCCCCCEeCCCCCcc-CCCCE-eECCEEeCHHHHHHhC
Confidence 99999999974 678999999999999999999999 45444 8999999999999873
No 66
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.55 E-value=5.3e-15 Score=91.94 Aligned_cols=67 Identities=16% Similarity=0.396 Sum_probs=56.1
Q ss_pred cccccccccccCCceEEecCCcccccCccccccCCcccccCCeEEEeCCeeccH-HhHHHHhhhccccCCCC
Q psy7479 82 GYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCE-YDYEERQVFANIAYNPS 152 (170)
Q Consensus 82 ~~C~~C~~~i~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~-~c~~~~~~~~~~~~~~~ 152 (170)
|+|.+|+++|... ..+.+.++.||++||+|..|+++| .+..|+..++++||. .||.++ +.+.+....
T Consensus 1 p~C~~C~~~I~~~-~~v~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~g~~yC~~~cy~~~--f~~~C~~C~ 68 (76)
T 1iml_A 1 PKCPKCDKEVYFA-ERVTSLGKDWHRPCLKCEKCGKTL-TSGGHAEHEGKPYCNHPCYSAM--FGPKGFGRG 68 (76)
T ss_dssp CBCTTTSSBCCGG-GEEEETTEEEETTTCBCTTTCCBC-CTTTEEEETTEEEETTTHHHHH--SSCCCSSCC
T ss_pred CcCCCCCCEEECc-eEEEECCccccCCCCCccccCccC-CCCceECcCCeEeeCHHHHHHH--hCccCCCcC
Confidence 3899999999853 567899999999999999999999 555799999999999 699987 555555443
No 67
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.55 E-value=3.9e-15 Score=95.37 Aligned_cols=58 Identities=26% Similarity=0.680 Sum_probs=52.7
Q ss_pred ccccccccccCCceEEecCCcccccCccccccCCcccccCCeEEEeCCeeccHHhHHHHhh
Q psy7479 83 YCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQV 143 (170)
Q Consensus 83 ~C~~C~~~i~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~ 143 (170)
+|.+|+++|.+ .++.+.++.||++||+|..|+++| .+..|+..++++||+.||.++|.
T Consensus 27 ~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~g~~yC~~~y~~~f~ 84 (89)
T 1x64_A 27 LCDKCGSGIVG--AVVKARDKYRHPECFVCADCNLNL-KQKGYFFVEGELYCETHARARTS 84 (89)
T ss_dssp BCTTTCCBCCS--CCEESSSCEECTTTCCCSSSCCCT-TTSCCEEETTEEECHHHHHHHSS
T ss_pred CcccCCCEecc--cEEEECCceECccCCEecCCCCCC-CCCCeEeECCEEECHHHHHHHhC
Confidence 89999999976 678999999999999999999999 56678899999999999998743
No 68
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.54 E-value=4.3e-15 Score=93.32 Aligned_cols=59 Identities=29% Similarity=0.592 Sum_probs=52.1
Q ss_pred cccccccccccCCceEEecCCcccccCccccccCCcccccCCeEEEeCCeeccHHhHHHHhh
Q psy7479 82 GYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQV 143 (170)
Q Consensus 82 ~~C~~C~~~i~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~ 143 (170)
++|.+|+++|... .++.++++.||++||+|..|+++| .+ .|+..++++||+.||.++|.
T Consensus 16 ~~C~~C~~~I~~~-~~v~a~~~~wH~~CF~C~~C~~~L-~~-~~~~~~g~~yC~~~y~~~fg 74 (80)
T 2dj7_A 16 SHCAGCKEEIKHG-QSLLALDKQWHVSCFKCQTCSVIL-TG-EYISKDGVPYCESDYHAQFG 74 (80)
T ss_dssp SCCTTTCCCCSSS-CCEEETTEEECTTTCBCSSSCCBC-SS-CCEEETTEEECTTHHHHHTT
T ss_pred CCCcCcCCeeCCC-eEEEECCcccccccCCcCcCCCCc-CC-CeEEECCEEECHHHHHHHcC
Confidence 3899999999753 567899999999999999999999 45 69999999999999998843
No 69
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.52 E-value=3.6e-15 Score=91.54 Aligned_cols=63 Identities=21% Similarity=0.520 Sum_probs=55.0
Q ss_pred CCcccccccccccccce-eEEeCCccccccCccccccccccccCCCeeEEeCCccccccceecccc
Q psy7479 15 GGLKECASCGKRITERF-LLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 79 (170)
Q Consensus 15 ~~~~~C~~C~~~I~~~~-~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~ 79 (170)
...++|.+|+++|...+ ++.++++.||++||+|..|+++|.. ..|+.++|++||+.||.++|+
T Consensus 9 ~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~--~~~~~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 9 SASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPE--GLFYEFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp CTTCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGG--GCCEEETTEEECHHHHHHHTC
T ss_pred cCCccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCC--CCeEeECCeEeCHHHHHHhhC
Confidence 35678999999999653 5789999999999999999999974 368999999999999998874
No 70
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.52 E-value=5.9e-15 Score=92.82 Aligned_cols=64 Identities=20% Similarity=0.573 Sum_probs=52.9
Q ss_pred ccccccccccCCceEEecCCcccccCccccccCCcccccCCeEEEeCCeeccHHhHHHHhhhccccCC
Q psy7479 83 YCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFANIAYN 150 (170)
Q Consensus 83 ~C~~C~~~i~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~~~~~ 150 (170)
+|.+|+++|...+ .+.+.++.||++||+|..|+++| .+..|+..++++||+.||.++ +.+.+..
T Consensus 9 ~C~~C~~~I~~~~-~~~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~~~~yC~~cy~~~--f~~~c~g 72 (81)
T 1a7i_A 9 KCGACGRTVYHAE-EVQCDGRSFHRCCFLCMVCRKNL-DSTTVAIHDAEVYCKSCYGKK--YGPKGYG 72 (81)
T ss_dssp BCSSSCCBCSSTT-EEEETTEEEESSSEECSSSCCEE-CSSCCEEETTEEECSHHHHHH--CC-----
T ss_pred cCcCcCccccCce-eEEeCCcccccccCccCCCCCCC-CCCCeEeeCCEEECHHHHHHH--hCCcccc
Confidence 9999999997544 67899999999999999999999 566799999999999999987 4444443
No 71
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.51 E-value=6.8e-15 Score=99.71 Aligned_cols=59 Identities=27% Similarity=0.600 Sum_probs=53.0
Q ss_pred ccccccccccCCceEEecCCcccccCccccccCCccccc-CCeEEEeCCeeccHHhHHHHh
Q psy7479 83 YCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCV-GDRFYLCDNKILCEYDYEERQ 142 (170)
Q Consensus 83 ~C~~C~~~i~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~-~~~~~~~~~~~~C~~c~~~~~ 142 (170)
+|.+|+++|.+ ..++.+.++.||++||+|..|+++|.. +..|+.++|++||+.||.++|
T Consensus 63 ~C~~C~~~I~~-~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~F 122 (123)
T 2l4z_A 63 RCAGCGGKIAD-RFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLF 122 (123)
T ss_dssp BBSSSSSBCCS-SSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHC
T ss_pred cCcCCCCCcCC-cEEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhc
Confidence 99999999986 346899999999999999999999952 578999999999999999875
No 72
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.51 E-value=1.2e-14 Score=99.43 Aligned_cols=87 Identities=18% Similarity=0.381 Sum_probs=65.7
Q ss_pred cccccccccccCCceEEecCCcccccCccccccCCccccc-CCeEEEeCCeeccHHhHHHHhhhccccCCCCchHHhhh-
Q psy7479 82 GYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCV-GDRFYLCDNKILCEYDYEERQVFANIAYNPSSLAHLRR- 159 (170)
Q Consensus 82 ~~C~~C~~~i~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~-~~~~~~~~~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~- 159 (170)
++|.+|+++|.+ ..++.++++.||++||+|..|+++|.. +..|+..+|++||+.||.+++.....+..........+
T Consensus 3 ~~C~~C~~~I~~-~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~e~ 81 (131)
T 2xjy_A 3 LTCGGCQQNIGD-RYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEM 81 (131)
T ss_dssp CBBTTTCCBCCS-SEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECTTSE
T ss_pred ccCcCCCCEeCC-cEEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCccce
Confidence 489999999986 347899999999999999999999953 56899999999999999998554336666544433211
Q ss_pred hc-ceeeeccc
Q psy7479 160 QV-TLQVLWIR 169 (170)
Q Consensus 160 ~~-~~~~~~~~ 169 (170)
.+ .....||.
T Consensus 82 ~~~a~~~~~H~ 92 (131)
T 2xjy_A 82 TMRVKDKVYHL 92 (131)
T ss_dssp EEEETTEEEEG
T ss_pred eEeeCCceECc
Confidence 11 24556765
No 73
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.51 E-value=7.6e-15 Score=99.52 Aligned_cols=73 Identities=23% Similarity=0.449 Sum_probs=64.2
Q ss_pred ccccccccccccc-eeEEeCCccccccCccccccccccccCCCeeEEeCCccccccceecccccccccccccccccC
Q psy7479 18 KECASCGKRITER-FLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 93 (170)
Q Consensus 18 ~~C~~C~~~I~~~-~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~~~~~C~~C~~~i~~ 93 (170)
+.|.+|+++|... .++.++++.||+.||+|..|++.|.. +..|+.+++++||+.||.+++++ +|..++..+.+
T Consensus 9 ~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~-g~~f~~~~g~~yC~~cy~~~~~~--~~~~~~~~~~~ 82 (123)
T 2l3k_A 9 GLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSV-GDRYLLINSDIVCEQDIYEWTKI--NGGSGGSGGSG 82 (123)
T ss_dssp CCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCT-TCEEEECSSSEEEGGGHHHHHHH--HTCCCCCCSCC
T ss_pred CcccCCCCeecCCceEEEECCcccccccCccccCCCCCCC-CCcEEeeCCEEEcHHHhHHHhcc--ccCCCCCCCcc
Confidence 4899999999964 46789999999999999999999952 45699999999999999999998 99988877654
No 74
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.50 E-value=5.3e-15 Score=93.02 Aligned_cols=66 Identities=15% Similarity=0.356 Sum_probs=56.5
Q ss_pred CcccccccccccccceeEEeCCccccccCccccccccccccCCCeeE-EeCCccccccceecccccccccc
Q psy7479 16 GLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLY-QKANLILCKRDYLRLFGTTGYCA 85 (170)
Q Consensus 16 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~-~~~~~~yC~~c~~~~~~~~~~C~ 85 (170)
..++|.+|+++|.+. ++.++++.||++||+|..|+++|.. +..|+ .+++++||+.||.++|++ .|.
T Consensus 14 ~~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~~-g~~f~~~~~~~~~C~~c~~~~~~~--~~s 80 (81)
T 1x6a_A 14 FGEFCHGCSLLMTGP-FMVAGEFKYHPECFACMSCKVIIED-GDAYALVQHATLYCGKCHNEVVSG--PSS 80 (81)
T ss_dssp SSCBCTTTCCBCCSC-CBCCTTCCBCTTSCBCTTTCCBCCT-TSCEEECSSSCEEEHHHHHHHHCT--TSC
T ss_pred cCCcCccCCCCcCce-EEEECCceeccccCCccCCCCccCC-CCcEEEeeCCEEECHHHHHHHhcC--CCC
Confidence 457899999999965 6889999999999999999999963 34566 489999999999999987 553
No 75
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.50 E-value=9.9e-15 Score=97.68 Aligned_cols=64 Identities=25% Similarity=0.556 Sum_probs=55.6
Q ss_pred cccccccccccCCceEEecCCcccccCccccccCCccccc-CCeEEEeCCeeccHHhHHHHhhhcc
Q psy7479 82 GYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCV-GDRFYLCDNKILCEYDYEERQVFAN 146 (170)
Q Consensus 82 ~~C~~C~~~i~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~-~~~~~~~~~~~~C~~c~~~~~~~~~ 146 (170)
++|.+|+++|.+ ..++.+.++.||++||+|..|+++|.. +..|+..++++||+.||.++|....
T Consensus 4 ~~C~~C~~~I~~-~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~c 68 (114)
T 1j2o_A 4 LTCGGCQQNIGD-RYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGG 68 (114)
T ss_dssp BCBSSSCSCBCS-SEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSCC
T ss_pred CCCcCCCCeeCC-cEEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCccc
Confidence 489999999986 348899999999999999999999953 4689999999999999999865543
No 76
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.50 E-value=7.2e-15 Score=88.64 Aligned_cols=59 Identities=22% Similarity=0.587 Sum_probs=51.9
Q ss_pred cccccccccccccc-eeEEeCCcccc--ccCccccccccccccCCCeeEEeCCcccc-ccceecc
Q psy7479 17 LKECASCGKRITER-FLLKALDLFWH--EDCLKCGCCDCRLGEVGSTLYQKANLILC-KRDYLRL 77 (170)
Q Consensus 17 ~~~C~~C~~~I~~~-~~~~~~~~~~H--~~Cf~C~~C~~~l~~~~~~~~~~~~~~yC-~~c~~~~ 77 (170)
.+.|.+|+++|... ..+.++++.|| ++||+|..|+++|. +..|+.++|++|| .+||.++
T Consensus 2 a~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~--~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 2 AVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLI--GQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp CEECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCT--TSCCEEETTEEESSHHHHHTT
T ss_pred cCCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCC--CCceEEECCEEecCHHHhhhh
Confidence 46899999999963 57899999999 99999999999997 4669999999999 8888653
No 77
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.49 E-value=3e-14 Score=102.79 Aligned_cols=99 Identities=14% Similarity=0.248 Sum_probs=71.3
Q ss_pred CCcccccccee---cccccccccccccccccCCceEEecCCcccccCccccccCCcccccCCeEEEeCCeeccHHhHHHH
Q psy7479 65 ANLILCKRDYL---RLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEER 141 (170)
Q Consensus 65 ~~~~yC~~c~~---~~~~~~~~C~~C~~~i~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~ 141 (170)
++..||...+. ....+ +|.+|+++|.+ ..++.+.++.||++||+|..|+++| .+..| .++|++||+.||.++
T Consensus 43 ~~~~~~~~~~~~~~~~~~~--~C~~C~~~I~~-~~~~~a~~~~wH~~CF~C~~C~~~L-~~~~f-~~~g~~yC~~~y~~~ 117 (182)
T 2jtn_A 43 DDEGGSGGHMGSGGTPEIP--MCAGCDQHILD-RFILKALDRHWHSKCLKCSDCHVPL-AERCF-SRGESVYCKDDFFKR 117 (182)
T ss_dssp SSSCSSSSSCCCCCCCSCC--BCBTSSSBCCC-SEEEEETTEEECSSTTSCTTTCCCC-SSCCE-EETTEEECHHHHHHT
T ss_pred ccccccccccccCCCCCCC--cCccCCCCccC-ceeEEecCCeEccccCccCCCCCcc-CCCce-eECCEeeecCccccc
Confidence 45567777664 22333 99999999986 4577899999999999999999999 45455 689999999999997
Q ss_pred hhhccccCCCCchHHhhhh--cceeeecccC
Q psy7479 142 QVFANIAYNPSSLAHLRRQ--VTLQVLWIRE 170 (170)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 170 (170)
+.+.+..+...+...+. ......||++
T Consensus 118 --f~~kC~~C~~~I~~~~~v~~a~~~~~H~~ 146 (182)
T 2jtn_A 118 --FGTKCAACQLGIPPTQVVRRAQDFVYHLH 146 (182)
T ss_dssp --TSCCCTTTCCCCCSSCCCCEETTEECCTT
T ss_pred --cccccccCCCccCCCceEEecCCCCEEeC
Confidence 55666665443322211 1244577753
No 78
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=9.4e-15 Score=90.98 Aligned_cols=59 Identities=22% Similarity=0.492 Sum_probs=52.5
Q ss_pred Cccccccccccccc----ceeEEeCCccccccCccccccccccccCCCeeEEeCCccccccceec
Q psy7479 16 GLKECASCGKRITE----RFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 76 (170)
Q Consensus 16 ~~~~C~~C~~~I~~----~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~ 76 (170)
..++|.+|+++|.+ ..++.++++.||++||+|..|+++|. +..|+.++|++||+.||.+
T Consensus 14 ~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~--~~~f~~~~~~~yC~~cy~~ 76 (77)
T 2egq_A 14 VAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLA--NKRFVFHQEQVYCPDCAKK 76 (77)
T ss_dssp CCCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCT--TSCCCEETTEECCHHHHHH
T ss_pred hCccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCC--CCccEeECCEEEChHHhcc
Confidence 45789999999995 46789999999999999999999997 3568899999999999865
No 79
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.47 E-value=1.9e-14 Score=92.45 Aligned_cols=60 Identities=23% Similarity=0.608 Sum_probs=52.8
Q ss_pred ccccccccccCCceEEecCCcccccCccccccCCcccccCCeEEEeCCeeccHHhHHHHhhh
Q psy7479 83 YCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVF 144 (170)
Q Consensus 83 ~C~~C~~~i~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~ 144 (170)
+|.+|+++|.+.+ .+.+.++.||++||+|..|+++| .+..|+..++++||+.||.+++..
T Consensus 17 ~C~~C~~~I~~~~-~v~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~g~~yC~~~y~~~f~~ 76 (91)
T 2d8y_A 17 TCVECQKTVYPME-RLLANQQVFHISCFRCSYCNNKL-SLGTYASLHGRIYCKPHFNQLFKS 76 (91)
T ss_dssp BCTTTCCBCCTTS-EEECSSSEEETTTCBCTTTCCBC-CTTTCCCSSSCCCCHHHHHHHSCC
T ss_pred cCccCCCccCCce-eEEECCCEECCCCCeeCCCCCCC-CCCCcEeECCEEECHHHHHHHhCC
Confidence 9999999998644 56899999999999999999999 455688999999999999988543
No 80
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.47 E-value=1.5e-14 Score=97.94 Aligned_cols=69 Identities=23% Similarity=0.450 Sum_probs=57.3
Q ss_pred ccccccccccCCceEEecCCcccccCccccccCCccccc-CCeEEEeCCeeccHHhHHHHhhhccccCCCC
Q psy7479 83 YCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCV-GDRFYLCDNKILCEYDYEERQVFANIAYNPS 152 (170)
Q Consensus 83 ~C~~C~~~i~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~-~~~~~~~~~~~~C~~c~~~~~~~~~~~~~~~ 152 (170)
+|.+|+++|.+. .++.+.++.||++||+|..|+++|.. +..|+..+|++||+.||.++|.....+..+.
T Consensus 7 ~C~~C~~~I~~~-~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~ 76 (122)
T 1m3v_A 7 RCAGCGGKIADR-FLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGG 76 (122)
T ss_dssp CBSSSSSCCCSS-CCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSS
T ss_pred CCcccCCEeCCc-EEEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCC
Confidence 999999999863 36789999999999999999999942 4679999999999999999865432555543
No 81
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.46 E-value=4.5e-14 Score=102.38 Aligned_cols=87 Identities=18% Similarity=0.345 Sum_probs=66.1
Q ss_pred ccccccccccCCceEEecCCcccccCccccccCCccccc-CCeEEEeCCeeccHHhHHHHhhhccccCCCCchHHhhh-h
Q psy7479 83 YCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCV-GDRFYLCDNKILCEYDYEERQVFANIAYNPSSLAHLRR-Q 160 (170)
Q Consensus 83 ~C~~C~~~i~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~-~~~~~~~~~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~-~ 160 (170)
+|.+|+++|.+ ..++.++++.||++||+|..|+++|.. +..|+..+|++||+.||.+++....++..+.......+ .
T Consensus 7 ~C~~C~~~I~~-~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~e~~ 85 (188)
T 1rut_X 7 RCAGCGGKIAD-RFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELV 85 (188)
T ss_dssp BBTTTCCBCCC-SEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECTTSEE
T ss_pred cCccCCCEeCC-ceeEEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccccCcEE
Confidence 99999999986 347899999999999999999999954 57899999999999999998554325666554433222 1
Q ss_pred c-ceeeecccC
Q psy7479 161 V-TLQVLWIRE 170 (170)
Q Consensus 161 ~-~~~~~~~~~ 170 (170)
+ .....||.+
T Consensus 86 i~a~~~~~H~~ 96 (188)
T 1rut_X 86 MRAQGNVYHLK 96 (188)
T ss_dssp EEETTEEECGG
T ss_pred EEcCCCEEeCC
Confidence 1 245567753
No 82
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.43 E-value=1.4e-14 Score=91.33 Aligned_cols=59 Identities=19% Similarity=0.515 Sum_probs=50.2
Q ss_pred cccccccccccCCceEEecCCcccccCccccccCCcccccCCeEE--EeCCeeccHHhHHHHh
Q psy7479 82 GYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFY--LCDNKILCEYDYEERQ 142 (170)
Q Consensus 82 ~~C~~C~~~i~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~--~~~~~~~C~~c~~~~~ 142 (170)
++|.+|+++|...+ .+.+.++.||++||+|..|+++| .+..|+ +.++++||+.||.+++
T Consensus 16 ~~C~~C~~~I~~~e-~v~a~~~~wH~~CF~C~~C~~~L-~~~~~~~~~~~g~~yC~~~y~~~~ 76 (82)
T 2co8_A 16 DLCALCGEHLYVLE-RLCVNGHFFHRSCFRCHTCEATL-WPGGYEQHPGDGHFYCLQHLPQTD 76 (82)
T ss_dssp CBCSSSCCBCCTTT-BCCBTTBCCBTTTCBCSSSCCBC-CTTSEECCTTTCCCEETTTCCCCC
T ss_pred CCCcccCCCcccce-EEEECCCeeCCCcCEEcCCCCCc-CCCceeEeCcCCEEEChHHHHhhh
Confidence 38999999997644 45699999999999999999999 566677 4689999999998763
No 83
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.39 E-value=2.2e-13 Score=97.17 Aligned_cols=83 Identities=17% Similarity=0.395 Sum_probs=61.8
Q ss_pred cccccccccccCCceEEecCCcccccCccccccCCcccccCCeEEEeCCeeccHHhHHHHhhhccccCCCCchHHhhhh-
Q psy7479 82 GYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFANIAYNPSSLAHLRRQ- 160 (170)
Q Consensus 82 ~~C~~C~~~i~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~- 160 (170)
++|.+|+++|.+ ..++.+.|+.||++||+|..|+++| .+..| ..+|++||+.||.++ +++.+..+...+...+.
T Consensus 7 ~~C~~C~~~I~~-~~~~~a~~~~wH~~CF~C~~C~~~L-~~~~f-~~~g~~yC~~~y~~~--f~~~C~~C~~~I~~~~~v 81 (169)
T 2rgt_A 7 PMCAGCDQHILD-RFILKALDRHWHSKCLKCSDCHVPL-AERCF-SRGESVYCKDDFFKR--FGTKCAACQLGIPPTQVV 81 (169)
T ss_dssp CBBSSSSSBCCS-SSCEECSSCEECTTTSBCTTTCCBC-CSCCE-ESSSCEECHHHHHHH--HSCBCTTTCCBCCTTSEE
T ss_pred CccccCCCccCC-cEEEEECCcEEccccCccCCCCCcC-CCCCc-ccCCeeeeccccccc--ccccccccccccCCCcEE
Confidence 399999999986 3467899999999999999999999 44445 789999999999998 55566655443322211
Q ss_pred -cceeeeccc
Q psy7479 161 -VTLQVLWIR 169 (170)
Q Consensus 161 -~~~~~~~~~ 169 (170)
......||.
T Consensus 82 ~~a~~~~~H~ 91 (169)
T 2rgt_A 82 RRAQDFVYHL 91 (169)
T ss_dssp EEETTEEEEG
T ss_pred EEcCCceEee
Confidence 124456665
No 84
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.34 E-value=6.8e-13 Score=83.28 Aligned_cols=62 Identities=21% Similarity=0.395 Sum_probs=50.7
Q ss_pred CcccccccccccccceeEEeCCccccccCccccccccccccCCCeeEEeCC-ccccccceeccccc
Q psy7479 16 GLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKAN-LILCKRDYLRLFGT 80 (170)
Q Consensus 16 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~-~~yC~~c~~~~~~~ 80 (170)
..++|.+|+++|.+. ++.++++.||++||+|..|+++|.. ..++..++ .+||..||.+.++.
T Consensus 14 ~~~~C~~C~~~I~~~-~v~a~~~~wH~~CF~C~~C~~~L~~--~~~~~~~~~~~~C~~C~~~~~~~ 76 (81)
T 1v6g_A 14 YGTRCFSCDQFIEGE-VVSALGKTYHPDCFVCAVCRLPFPP--GDRVTFNGKECMCQKCSLPVSVS 76 (81)
T ss_dssp CCCBCTTTCCBCCSC-CEEETTEEECTTTSSCSSSCCCCCS--SSCEEEETTEEEEHHHHSCCSSC
T ss_pred hCCcCccccCEeccc-eEEECCceeCccCCccccCCCCCCC--CCEEEeCCCCEEChhhhcccCCC
Confidence 456899999999965 7899999999999999999999973 33455555 57999999877653
No 85
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=98.11 E-value=6.3e-07 Score=45.34 Aligned_cols=29 Identities=38% Similarity=0.870 Sum_probs=26.4
Q ss_pred cccccccccccccceeEEeCCccccccCc
Q psy7479 17 LKECASCGKRITERFLLKALDLFWHEDCL 45 (170)
Q Consensus 17 ~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf 45 (170)
.+.|..|++.|+..+.+.+.|+.||..||
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred CCcCCccCCEEecceeEEECCeEecccCC
Confidence 46899999999988788899999999998
No 86
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=97.80 E-value=5.3e-06 Score=41.86 Aligned_cols=27 Identities=30% Similarity=0.722 Sum_probs=23.7
Q ss_pred ccccccccccCCceEEecCCcccccCcc
Q psy7479 83 YCAACTKVIPAFEMVMRAKNNVYHLECF 110 (170)
Q Consensus 83 ~C~~C~~~i~~~~~~~~~~~~~~H~~Cf 110 (170)
+|..|++.+.+.| .+.+.|+.||..||
T Consensus 5 ~C~~C~k~Vy~~E-k~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 5 NCARCGKIVYPTE-KVNCLDKFWHKACF 31 (31)
T ss_dssp BCSSSCSBCCGGG-CCCSSSSCCCGGGC
T ss_pred cCCccCCEEecce-eEEECCeEecccCC
Confidence 8999999998865 45688999999998
No 87
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=92.69 E-value=0.11 Score=34.13 Aligned_cols=102 Identities=14% Similarity=0.229 Sum_probs=62.2
Q ss_pred ccccccccccccC----CCeeEEeCCccccccceecccccccccccccccccCCceEEecCCcccccCccccccCCcccc
Q psy7479 45 LKCGCCDCRLGEV----GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFC 120 (170)
Q Consensus 45 f~C~~C~~~l~~~----~~~~~~~~~~~yC~~c~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~ 120 (170)
+.|..|...+.+. .......=|..||..|..+.+.....|..|.+.+...+..... .-.+=+.|..|...+.
T Consensus 8 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~----i~~~~~~C~iC~~~~~ 83 (133)
T 4ap4_A 8 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY----IGSGTVSCPICMDGYS 83 (133)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEECB----CSSSSCBCTTTCCBHH
T ss_pred CCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccccccc----cCCCCCCCCCCCCccc
Confidence 5677776666421 1114556678889888876644334899999998653322111 1234466888888773
Q ss_pred c----CCe-EEEeCCeeccHHhHHHHhhhccccCC
Q psy7479 121 V----GDR-FYLCDNKILCEYDYEERQVFANIAYN 150 (170)
Q Consensus 121 ~----~~~-~~~~~~~~~C~~c~~~~~~~~~~~~~ 150 (170)
. +.. ....=|..||..|..+.+.....++.
T Consensus 84 ~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~ 118 (133)
T 4ap4_A 84 EIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPT 118 (133)
T ss_dssp HHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTT
T ss_pred cccccCcceEeCCCCChhhHHHHHHHHHcCCCCCC
Confidence 2 122 33334899999999877655544444
No 88
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=88.42 E-value=0.28 Score=29.11 Aligned_cols=48 Identities=4% Similarity=0.133 Sum_probs=34.4
Q ss_pred cCccccccccccccCCCeeEEeCCccccccceeccccc-ccccccccccccC
Q psy7479 43 DCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGT-TGYCAACTKVIPA 93 (170)
Q Consensus 43 ~Cf~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~~-~~~C~~C~~~i~~ 93 (170)
+-|.|..|...+. ......-|..||..|..+.+.. ...|..|+.++..
T Consensus 7 ~~~~C~IC~~~~~---~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 7 EYFRCPISLELMK---DPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSCTTTSCCCS---SEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred ccCCCCCcccccc---CCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 3478888888775 3466678889999997665432 2378888888754
No 89
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=84.49 E-value=0.67 Score=27.38 Aligned_cols=16 Identities=25% Similarity=0.466 Sum_probs=9.3
Q ss_pred CCcccccccccccccc
Q psy7479 15 GGLKECASCGKRITER 30 (170)
Q Consensus 15 ~~~~~C~~C~~~I~~~ 30 (170)
.....|..|...+...
T Consensus 13 ~~~~~C~IC~~~~~~~ 28 (78)
T 2ect_A 13 GSGLECPVCKEDYALG 28 (78)
T ss_dssp SSSCCCTTTTSCCCTT
T ss_pred CCCCCCeeCCccccCC
Confidence 3445677776666543
No 90
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=83.78 E-value=0.81 Score=24.90 Aligned_cols=26 Identities=12% Similarity=0.197 Sum_probs=12.6
Q ss_pred Cccccccceecccccccccccccccc
Q psy7479 66 NLILCKRDYLRLFGTTGYCAACTKVI 91 (170)
Q Consensus 66 ~~~yC~~c~~~~~~~~~~C~~C~~~i 91 (170)
|..||..|..+.+.....|..|...|
T Consensus 28 ~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 28 GHGFHAECVDMWLGSHSTCPLCRLTV 53 (55)
T ss_dssp CCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred CCcccHHHHHHHHHcCCcCcCCCCEe
Confidence 44455555443332223566666554
No 91
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.72 E-value=0.62 Score=27.09 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=15.2
Q ss_pred CCccccccceeccccccccccccccccc
Q psy7479 65 ANLILCKRDYLRLFGTTGYCAACTKVIP 92 (170)
Q Consensus 65 ~~~~yC~~c~~~~~~~~~~C~~C~~~i~ 92 (170)
=|..||..|..+.+.....|..|...|.
T Consensus 33 CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 33 CKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp TTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred CCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 3445555555443322226888877774
No 92
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=83.51 E-value=0.74 Score=27.91 Aligned_cols=52 Identities=15% Similarity=0.419 Sum_probs=38.3
Q ss_pred CCCcccccccccccccceeEEeCCccccccCccccccccccccCCCeeEEeCCcccccc
Q psy7479 14 SGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKR 72 (170)
Q Consensus 14 ~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~yC~~ 72 (170)
....-.|.-|.+.+.+...+.--...-|+-||.|+ ...|.. ....+.+||..
T Consensus 12 ~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCs--r~sIk~-----q~~~~EvyCPS 63 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCS--RESIKA-----QGATGEVYCPS 63 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHH--HHHHHH-----HHSSSCCCCTT
T ss_pred CCCeeEeecchhhhccCceeeCCCccCCeeecccc--HHHHHh-----cCCCCcEECCC
Confidence 45567799999999998667778888999999985 334431 12456788864
No 93
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=83.24 E-value=0.57 Score=31.25 Aligned_cols=45 Identities=18% Similarity=0.270 Sum_probs=27.6
Q ss_pred ccccccccccccCCCeeEEeCCccccccceeccccccccccccccccc
Q psy7479 45 LKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIP 92 (170)
Q Consensus 45 f~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~~~~~C~~C~~~i~ 92 (170)
+.|..|...+. ......=|..||..|..+.+.....|+.|..+|.
T Consensus 54 ~~C~iC~~~~~---~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 54 LQCIICSEYFI---EAVTLNCAHSFCSYCINEWMKRKIECPICRKDIK 98 (138)
T ss_dssp SBCTTTCSBCS---SEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred CCCcccCcccC---CceECCCCCCccHHHHHHHHHcCCcCCCCCCcCC
Confidence 46777777664 3455566777787776554332236777766663
No 94
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=81.77 E-value=0.95 Score=29.43 Aligned_cols=8 Identities=25% Similarity=1.140 Sum_probs=3.9
Q ss_pred cccCCccc
Q psy7479 112 CQQCNHRF 119 (170)
Q Consensus 112 C~~C~~~l 119 (170)
|-.|...+
T Consensus 116 CP~Cr~~~ 123 (133)
T 4ap4_A 116 CPTCRKKI 123 (133)
T ss_dssp CTTTCCBC
T ss_pred CCCCCCcC
Confidence 44444444
No 95
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=81.77 E-value=1 Score=28.43 Aligned_cols=49 Identities=10% Similarity=0.021 Sum_probs=37.1
Q ss_pred ccCccccccccccccCCCeeEEeCCccccccceecccccccccccccccccC
Q psy7479 42 EDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 93 (170)
Q Consensus 42 ~~Cf~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~~~~~C~~C~~~i~~ 93 (170)
+.-|.|..|...+. ..+....|..||..|..+.+...+.|..|+.++..
T Consensus 27 p~~~~CpI~~~~m~---dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMT---DPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCS---SEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCccc---CCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 56789999988885 56777899999999876654333478888887754
No 96
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.54 E-value=0.36 Score=27.67 Aligned_cols=46 Identities=22% Similarity=0.427 Sum_probs=27.4
Q ss_pred ccccccccccccCCCeeEEeCCccccccceeccc-ccccccccccccccC
Q psy7479 45 LKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLF-GTTGYCAACTKVIPA 93 (170)
Q Consensus 45 f~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~-~~~~~C~~C~~~i~~ 93 (170)
+.|..|...+.+ .....=|..||..|..+.+ .....|..|..+|..
T Consensus 16 ~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 16 YKCEKCHLVLCS---PKQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp EECTTTCCEESS---CCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CCCCCCChHhcC---eeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 456666555541 2234556777888876654 212378888888754
No 97
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.34 E-value=0.45 Score=28.50 Aligned_cols=45 Identities=20% Similarity=0.423 Sum_probs=23.0
Q ss_pred ccccccccccccCCCeeEEeCCccccccceeccccccccccccccccc
Q psy7479 45 LKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIP 92 (170)
Q Consensus 45 f~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~~~~~C~~C~~~i~ 92 (170)
+.|..|...+. ......=|..||..|..+.+.....|..|..++.
T Consensus 16 ~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 16 FRCFICRQAFQ---NPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp SBCSSSCSBCC---SEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCcCCCchhc---CeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 34555555443 2233444556666666544332226777776663
No 98
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.00 E-value=0.5 Score=27.57 Aligned_cols=46 Identities=22% Similarity=0.409 Sum_probs=25.6
Q ss_pred ccccccccccccCCCeeEE-eCCccccccceecccccccccccccccccC
Q psy7479 45 LKCGCCDCRLGEVGSTLYQ-KANLILCKRDYLRLFGTTGYCAACTKVIPA 93 (170)
Q Consensus 45 f~C~~C~~~l~~~~~~~~~-~~~~~yC~~c~~~~~~~~~~C~~C~~~i~~ 93 (170)
+.|..|...+. ..... .=|..||..|..+.+.....|..|...|..
T Consensus 16 ~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 16 ILCSICKGYLI---DATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62 (72)
T ss_dssp GSCTTTSSCCS---SCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred CCCCCCChHHH---CcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence 45555555553 12332 455667777765543222378888887754
No 99
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.58 E-value=0.94 Score=26.25 Aligned_cols=46 Identities=13% Similarity=0.205 Sum_probs=25.3
Q ss_pred ccccccccccccCCCeeEEeCCccccccceecccc---cccccccccccccC
Q psy7479 45 LKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG---TTGYCAACTKVIPA 93 (170)
Q Consensus 45 f~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~---~~~~C~~C~~~i~~ 93 (170)
+.|..|...+. ......=|..||..|..+.+. ....|..|..+|..
T Consensus 21 ~~C~IC~~~~~---~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 21 VICPICLDILQ---KPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CBCTTTCSBCS---SEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred CEeccCCcccC---CeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 34555555543 223334556667777655442 11278888887754
No 100
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=78.12 E-value=1.3 Score=28.46 Aligned_cols=45 Identities=22% Similarity=0.391 Sum_probs=31.6
Q ss_pred CccccccccccccCCCeeEE-eCCccccccceecccccccccccccccccC
Q psy7479 44 CLKCGCCDCRLGEVGSTLYQ-KANLILCKRDYLRLFGTTGYCAACTKVIPA 93 (170)
Q Consensus 44 Cf~C~~C~~~l~~~~~~~~~-~~~~~yC~~c~~~~~~~~~~C~~C~~~i~~ 93 (170)
=+.|..|...+. ..... .=|..||..|..+.+.. .|..|..++..
T Consensus 22 ~~~C~IC~~~~~---~pv~~~~CgH~fC~~Ci~~~~~~--~CP~Cr~~~~~ 67 (117)
T 1jm7_B 22 LLRCSRCTNILR---EPVCLGGCEHIFCSNCVSDCIGT--GCPVCYTPAWI 67 (117)
T ss_dssp TTSCSSSCSCCS---SCBCCCSSSCCBCTTTGGGGTTT--BCSSSCCBCSC
T ss_pred CCCCCCCChHhh---CccEeCCCCCHHHHHHHHHHhcC--CCcCCCCcCcc
Confidence 367777877765 23444 67788888888777664 78888887743
No 101
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=77.75 E-value=1.1 Score=26.71 Aligned_cols=46 Identities=20% Similarity=0.418 Sum_probs=24.3
Q ss_pred ccccccccccccCCCeeEEeCCccccccceeccccc------ccccccccccccC
Q psy7479 45 LKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGT------TGYCAACTKVIPA 93 (170)
Q Consensus 45 f~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~~------~~~C~~C~~~i~~ 93 (170)
+.|..|...+. ......=|..||..|..+.+.. ...|..|...+..
T Consensus 20 ~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 20 VTCPICLELLK---EPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TSCTTTCSCCS---SCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred CCCcCCChhhC---cceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 45555555543 1233345556666666543211 1278888887754
No 102
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=77.63 E-value=1.5 Score=27.54 Aligned_cols=49 Identities=4% Similarity=-0.105 Sum_probs=35.1
Q ss_pred ccCccccccccccccCCCeeEEeCC-ccccccceecccccccccccccccccC
Q psy7479 42 EDCLKCGCCDCRLGEVGSTLYQKAN-LILCKRDYLRLFGTTGYCAACTKVIPA 93 (170)
Q Consensus 42 ~~Cf~C~~C~~~l~~~~~~~~~~~~-~~yC~~c~~~~~~~~~~C~~C~~~i~~ 93 (170)
++-|.|..|...+. ..+....| ..||..|..+.+...+.|..|+.++..
T Consensus 20 p~~~~CpI~~~~m~---dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMC---DPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cHhcCCcCcccccc---CCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 45688888888875 45777788 899988876554323378888877754
No 103
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=77.60 E-value=0.66 Score=28.27 Aligned_cols=49 Identities=8% Similarity=0.025 Sum_probs=35.4
Q ss_pred ccCccccccccccccCCCeeEEeCCccccccceecccccccccccccccccC
Q psy7479 42 EDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 93 (170)
Q Consensus 42 ~~Cf~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~~~~~C~~C~~~i~~ 93 (170)
+.-|.|..|...+. ..+....|..||..|..+.+...+.|..|+.++..
T Consensus 12 p~~~~CpI~~~~m~---dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMT---DPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhc---CCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 45688999988885 45777789999998876544322378888887754
No 104
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=77.55 E-value=0.91 Score=28.23 Aligned_cols=45 Identities=16% Similarity=0.417 Sum_probs=25.2
Q ss_pred ccccccccccccCCCeeEE-eCCccccccceeccccccccccccccccc
Q psy7479 45 LKCGCCDCRLGEVGSTLYQ-KANLILCKRDYLRLFGTTGYCAACTKVIP 92 (170)
Q Consensus 45 f~C~~C~~~l~~~~~~~~~-~~~~~yC~~c~~~~~~~~~~C~~C~~~i~ 92 (170)
+.|..|...+. ..... .=|..||..|..+.+.....|..|...+.
T Consensus 23 ~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 68 (99)
T 2y43_A 23 LRCGICFEYFN---IAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVT 68 (99)
T ss_dssp TBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCcccCChhhC---CcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCC
Confidence 46666666654 23333 45666777776554432236666666664
No 105
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=77.09 E-value=1.1 Score=24.33 Aligned_cols=27 Identities=15% Similarity=0.308 Sum_probs=13.0
Q ss_pred CCccccccceecccccccccccccccc
Q psy7479 65 ANLILCKRDYLRLFGTTGYCAACTKVI 91 (170)
Q Consensus 65 ~~~~yC~~c~~~~~~~~~~C~~C~~~i 91 (170)
=|..||..|..+.+.....|..|...|
T Consensus 27 CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 53 (55)
T 2ecm_A 27 CGHLLHRTCYEEMLKEGYRCPLCSGPS 53 (55)
T ss_dssp TSCEEETTHHHHHHHHTCCCTTSCCSS
T ss_pred CCCcccHHHHHHHHHcCCcCCCCCCcC
Confidence 344555555544322112566666555
No 106
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.68 E-value=0.92 Score=26.12 Aligned_cols=45 Identities=13% Similarity=0.265 Sum_probs=25.0
Q ss_pred ccccccccccccCCCeeEEeCCccccccceecccccccccccccccccC
Q psy7479 45 LKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 93 (170)
Q Consensus 45 f~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~~~~~C~~C~~~i~~ 93 (170)
+.|..|...+. . ....=|..||..|..+.+.....|..|..+|..
T Consensus 16 ~~C~IC~~~~~---~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 16 EECCICMDGRA---D-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTG 60 (70)
T ss_dssp CCCSSSCCSCC---S-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTC
T ss_pred CCCeeCCcCcc---C-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccC
Confidence 34555544443 1 334445556666665543322378888888865
No 107
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.30 E-value=3.6 Score=23.57 Aligned_cols=39 Identities=23% Similarity=0.497 Sum_probs=28.1
Q ss_pred cCCcccccCccccccCCcc-cccCCeEEEe--CCeeccHHhHHHH
Q psy7479 100 AKNNVYHLECFACQQCNHR-FCVGDRFYLC--DNKILCEYDYEER 141 (170)
Q Consensus 100 ~~~~~~H~~Cf~C~~C~~~-l~~~~~~~~~--~~~~~C~~c~~~~ 141 (170)
+....+|+ ..|..|++. | .|.+|.-. .+.-+|..||.+.
T Consensus 4 ~~~~v~H~--~~Cd~C~~~pi-~G~RykC~~C~d~DLC~~C~~~g 45 (63)
T 2e5r_A 4 GSSGVFHP--VECSYCHSESM-MGFRYRCQQCHNYQLCQDCFWRG 45 (63)
T ss_dssp CSSSCCSC--SCCSSSCCCSS-CSCEEEESSCSSCEECHHHHHHC
T ss_pred CcCCceeC--CCCcCCCCcce-ecceEEecCCCCchhHHHHHhCC
Confidence 34456777 889999875 6 67777643 3667899999864
No 108
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=76.28 E-value=1.2 Score=28.13 Aligned_cols=45 Identities=22% Similarity=0.430 Sum_probs=26.7
Q ss_pred ccccccccccccCCCeeEE-eCCccccccceeccccccccccccccccc
Q psy7479 45 LKCGCCDCRLGEVGSTLYQ-KANLILCKRDYLRLFGTTGYCAACTKVIP 92 (170)
Q Consensus 45 f~C~~C~~~l~~~~~~~~~-~~~~~yC~~c~~~~~~~~~~C~~C~~~i~ 92 (170)
+.|..|...+. ..... .=|..||..|..+.+.....|..|...+.
T Consensus 16 ~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (108)
T 2ckl_A 16 LMCVLCGGYFI---DATTIIECLHSFCKTCIVRYLETSKYCPICDVQVH 61 (108)
T ss_dssp TBCTTTSSBCS---SEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSC
T ss_pred CCCccCChHHh---CcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccc
Confidence 56777766664 33444 66777777776554432226777766664
No 109
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=76.26 E-value=4.9 Score=25.23 Aligned_cols=60 Identities=20% Similarity=0.392 Sum_probs=34.1
Q ss_pred ccccccccccccCCCeeEEeCCccccccceecccccccccccccccccCCceEEecCCcccccCccccccCCcccc
Q psy7479 45 LKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFC 120 (170)
Q Consensus 45 f~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~ 120 (170)
..|..|+..|.. .++..+|..|..... ..+.|+.|++++ .++.|=|.. =|.|..|+..++
T Consensus 33 ~~CP~Cq~eL~~-------~g~~~hC~~C~~~f~-~~a~CPdC~q~L----evLkACGAv----dYFC~~chgLiS 92 (101)
T 2jne_A 33 LHCPQCQHVLDQ-------DNGHARCRSCGEFIE-MKALCPDCHQPL----QVLKACGAV----DYFCQHGHGLIS 92 (101)
T ss_dssp CBCSSSCSBEEE-------ETTEEEETTTCCEEE-EEEECTTTCSBC----EEEEETTEE----EEEETTTTEEEC
T ss_pred ccCccCCCccee-------cCCEEECccccchhh-ccccCcchhhHH----HHHHHhcCc----chhhccCCceee
Confidence 567777777641 234444666654321 123788888887 455554421 145777777764
No 110
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=76.20 E-value=1 Score=25.79 Aligned_cols=26 Identities=15% Similarity=0.157 Sum_probs=12.2
Q ss_pred ccccccceeccccccccccccccccc
Q psy7479 67 LILCKRDYLRLFGTTGYCAACTKVIP 92 (170)
Q Consensus 67 ~~yC~~c~~~~~~~~~~C~~C~~~i~ 92 (170)
..||..|..+.+.....|..|...|.
T Consensus 37 H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 37 HLFHQVCVDQWLITNKKCPICRVDIE 62 (69)
T ss_dssp CEEEHHHHHHHHHHCSBCTTTCSBSC
T ss_pred CHHHHHHHHHHHHcCCCCcCcCcccc
Confidence 34455554433221125666666664
No 111
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.65 E-value=1.2 Score=25.89 Aligned_cols=28 Identities=7% Similarity=0.294 Sum_probs=14.2
Q ss_pred CccccccceecccccccccccccccccC
Q psy7479 66 NLILCKRDYLRLFGTTGYCAACTKVIPA 93 (170)
Q Consensus 66 ~~~yC~~c~~~~~~~~~~C~~C~~~i~~ 93 (170)
+..||..|..+.+.....|..|..+|..
T Consensus 37 ~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 37 KHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp TEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 3445555554332212267777777643
No 112
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=75.29 E-value=1 Score=26.49 Aligned_cols=11 Identities=18% Similarity=0.446 Sum_probs=7.8
Q ss_pred ccccccccccC
Q psy7479 83 YCAACTKVIPA 93 (170)
Q Consensus 83 ~C~~C~~~i~~ 93 (170)
.|..|...+..
T Consensus 55 ~CP~Cr~~~~~ 65 (79)
T 2egp_A 55 SCPVCGISYSF 65 (79)
T ss_dssp CCSSSCCCCCS
T ss_pred cCCCCCCcCCH
Confidence 68888777754
No 113
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.24 E-value=1.9 Score=25.69 Aligned_cols=19 Identities=16% Similarity=0.358 Sum_probs=14.2
Q ss_pred CCCCCcccccccccccccc
Q psy7479 12 GASGGLKECASCGKRITER 30 (170)
Q Consensus 12 ~~~~~~~~C~~C~~~I~~~ 30 (170)
.-......|..|...|...
T Consensus 10 ~y~~~i~~C~IC~~~i~~g 28 (74)
T 2ct0_A 10 TYPDAVKICNICHSLLIQG 28 (74)
T ss_dssp CCSSSSCBCSSSCCBCSSS
T ss_pred hccCCCCcCcchhhHcccC
Confidence 3456678899999988754
No 114
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.15 E-value=0.93 Score=26.98 Aligned_cols=46 Identities=15% Similarity=0.284 Sum_probs=25.2
Q ss_pred ccccccccccccCCCeeEEeCCccccccceeccccc------ccccccccccccC
Q psy7479 45 LKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGT------TGYCAACTKVIPA 93 (170)
Q Consensus 45 f~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~~------~~~C~~C~~~i~~ 93 (170)
+.|..|...+.+ .....=|..||..|..+.+.. ...|..|...+..
T Consensus 20 ~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 20 VTCPICLELLTQ---PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCTTTCSCCSS---CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCcccCC---ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 455555555531 222345566777776543211 1278888888754
No 115
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=73.31 E-value=1.7 Score=23.93 Aligned_cols=43 Identities=21% Similarity=0.379 Sum_probs=24.9
Q ss_pred ccccccccccccCCCeeEEeCCccccccceecccccccccccccccccC
Q psy7479 45 LKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 93 (170)
Q Consensus 45 f~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~~~~~C~~C~~~i~~ 93 (170)
+.|..|...+.+ .....=|..||..|..+. .. .|..|...+..
T Consensus 7 ~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~-~~--~CP~Cr~~~~~ 49 (56)
T 1bor_A 7 LRCQQCQAEAKC---PKLLPCLHTLCSGCLEAS-GM--QCPICQAPWPL 49 (56)
T ss_dssp SSCSSSCSSCBC---CSCSTTSCCSBTTTCSSS-SS--SCSSCCSSSSC
T ss_pred CCceEeCCccCC---eEEcCCCCcccHHHHccC-CC--CCCcCCcEeec
Confidence 456666665542 233445666777776552 22 78888777643
No 116
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.17 E-value=1.4 Score=25.08 Aligned_cols=27 Identities=19% Similarity=0.466 Sum_probs=13.8
Q ss_pred Cccccccceeccccccccccccccccc
Q psy7479 66 NLILCKRDYLRLFGTTGYCAACTKVIP 92 (170)
Q Consensus 66 ~~~yC~~c~~~~~~~~~~C~~C~~~i~ 92 (170)
|..||..|..+.+.....|..|...|.
T Consensus 41 gH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 41 GHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp SCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 444555555443322226777776663
No 117
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=72.63 E-value=1.7 Score=27.77 Aligned_cols=45 Identities=22% Similarity=0.432 Sum_probs=23.2
Q ss_pred ccccccccccccCCCeeEEeCCccccccceeccccc-cccccccccccc
Q psy7479 45 LKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGT-TGYCAACTKVIP 92 (170)
Q Consensus 45 f~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~~-~~~C~~C~~~i~ 92 (170)
|.|..|...+. ......=|..||..|..+.+.. ...|..|...+.
T Consensus 16 ~~C~iC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 16 CQCGICMEILV---EPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HBCTTTCSBCS---SCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCccCCcccC---ceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 45555555553 2233345556666666544321 125777766653
No 118
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=72.27 E-value=1.2 Score=31.90 Aligned_cols=30 Identities=23% Similarity=0.422 Sum_probs=23.6
Q ss_pred cccccCCcccccCCeEEEeCCeeccHHhHHH
Q psy7479 110 FACQQCNHRFCVGDRFYLCDNKILCEYDYEE 140 (170)
Q Consensus 110 f~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~ 140 (170)
..|..|+... ....-...+|+++|..|+..
T Consensus 173 ~~C~~CGE~~-~~~~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 173 VRCDVCGEYT-YEADAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp EECTTTCCEE-EGGGCEEETTEEECHHHHHC
T ss_pred eECCCCCCch-hhcceeeeCCcEEChhhhcc
Confidence 4699999988 34445567999999999865
No 119
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=71.67 E-value=1.1 Score=25.12 Aligned_cols=49 Identities=16% Similarity=0.388 Sum_probs=27.2
Q ss_pred ccccccccccccC----CCeeEEeCCccccccceecccccccccccccccccC
Q psy7479 45 LKCGCCDCRLGEV----GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 93 (170)
Q Consensus 45 f~C~~C~~~l~~~----~~~~~~~~~~~yC~~c~~~~~~~~~~C~~C~~~i~~ 93 (170)
+.|..|...+.+. .......=|..||..|..+.+.....|..|...+..
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 4555665555311 111344566777777776544322378888877754
No 120
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.65 E-value=2.7 Score=24.28 Aligned_cols=43 Identities=12% Similarity=0.325 Sum_probs=30.5
Q ss_pred CCCCcccccccccccccceeEEeCCccccccCc--------cccccccccc
Q psy7479 13 ASGGLKECASCGKRITERFLLKALDLFWHEDCL--------KCGCCDCRLG 55 (170)
Q Consensus 13 ~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf--------~C~~C~~~l~ 55 (170)
.......|..|...+.+...+..=+..||..|+ +|..|...+.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (72)
T 2djb_A 11 ELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVH 61 (72)
T ss_dssp CCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCC
T ss_pred hcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccC
Confidence 344567899999888775333356777888776 6888888775
No 121
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=71.47 E-value=2 Score=24.07 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=20.2
Q ss_pred ccccCCcccccCCeEEEeCCeecc-HHhHHH
Q psy7479 111 ACQQCNHRFCVGDRFYLCDNKILC-EYDYEE 140 (170)
Q Consensus 111 ~C~~C~~~l~~~~~~~~~~~~~~C-~~c~~~ 140 (170)
.|..|+..+ ....-+..+|+.|| +.|...
T Consensus 9 aC~~C~c~V-s~~eai~~dGK~YCSe~Ca~g 38 (55)
T 1jjd_A 9 ACEPCLCNV-DPSKAIDRNGLYYCSEACADG 38 (55)
T ss_dssp SSTTCCCCB-CTTTSEESSSCEESSHHHHHT
T ss_pred cCCCCeeEe-chHHhhhcCCeEEehHHHHcc
Confidence 467788877 44455668889998 777553
No 122
>2eqg_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=71.11 E-value=1.4 Score=23.26 Aligned_cols=18 Identities=33% Similarity=0.479 Sum_probs=14.3
Q ss_pred EEEeCCeeccHHhHHHHh
Q psy7479 125 FYLCDNKILCEYDYEERQ 142 (170)
Q Consensus 125 ~~~~~~~~~C~~c~~~~~ 142 (170)
|...+-+|+|.+||+++.
T Consensus 22 ~mSVnTQP~CHEC~errq 39 (49)
T 2eqg_A 22 FMSVNTQPLCHECSERRQ 39 (49)
T ss_dssp BCCTTTTTSCHHHHHHHH
T ss_pred EEEecCccchHHHHHHHh
Confidence 334688999999999774
No 123
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=71.02 E-value=1.1 Score=26.21 Aligned_cols=46 Identities=13% Similarity=0.222 Sum_probs=24.9
Q ss_pred ccccccccccccCCCeeEEe-CCccccccceecccccc--cccccccccccC
Q psy7479 45 LKCGCCDCRLGEVGSTLYQK-ANLILCKRDYLRLFGTT--GYCAACTKVIPA 93 (170)
Q Consensus 45 f~C~~C~~~l~~~~~~~~~~-~~~~yC~~c~~~~~~~~--~~C~~C~~~i~~ 93 (170)
+.|..|...+. ...... =|..||..|..+.+... ..|..|...+..
T Consensus 16 ~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 16 LLCLICKDIMT---DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp GSCSSSCCCCT---TCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCcCCChHHh---CCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 45555555553 223344 36667777765544211 268888876543
No 124
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=70.80 E-value=1.1 Score=29.01 Aligned_cols=46 Identities=15% Similarity=0.368 Sum_probs=30.2
Q ss_pred ccccccccccccCCCeeEEeCCccccccceeccccccc-ccccccccccC
Q psy7479 45 LKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTG-YCAACTKVIPA 93 (170)
Q Consensus 45 f~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~~~~-~C~~C~~~i~~ 93 (170)
+.|..|...+. ..+...=|..||..|..+.+...+ .|..|..++..
T Consensus 19 ~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 19 YECPICLMALR---EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp GBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCcCChhhc---CeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 56777777764 335556777888888766543211 78888887754
No 125
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=70.64 E-value=2.3 Score=26.96 Aligned_cols=64 Identities=16% Similarity=0.453 Sum_probs=37.6
Q ss_pred ccccccccccCCCeeEEeCCccccccceeccc-ccccccccccccccCCceEEecCCcccccCccccc---cCCccc
Q psy7479 47 CGCCDCRLGEVGSTLYQKANLILCKRDYLRLF-GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQ---QCNHRF 119 (170)
Q Consensus 47 C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~-~~~~~C~~C~~~i~~~~~~~~~~~~~~H~~Cf~C~---~C~~~l 119 (170)
|..|+.++...+ -...=+.++|-+|+.... .....|..|..+|..-|. ..+|.. |.|+ .|.+.+
T Consensus 4 C~~C~~Pi~iyg--RmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~--~~~~~i-----f~C~~~~~Ckrty 71 (101)
T 3vk6_A 4 CDKCGLPIKVYG--RMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQ--CTRGSL-----FMCSIVQGCKRTY 71 (101)
T ss_dssp CTTTCSBCSEEE--EEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEE--EEGGGC-----CCCCCCCCCCCCC
T ss_pred cCccCCCeEEEe--eeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeEE--eccCCE-----EECCCCCCHHHHh
Confidence 667888875211 234455688999986521 111289999999954333 233444 4565 466654
No 126
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=69.84 E-value=1.2 Score=27.82 Aligned_cols=46 Identities=15% Similarity=0.349 Sum_probs=27.5
Q ss_pred ccccccccccccCCCeeE-EeCCccccccceecccccc-cccccccccccC
Q psy7479 45 LKCGCCDCRLGEVGSTLY-QKANLILCKRDYLRLFGTT-GYCAACTKVIPA 93 (170)
Q Consensus 45 f~C~~C~~~l~~~~~~~~-~~~~~~yC~~c~~~~~~~~-~~C~~C~~~i~~ 93 (170)
+.|..|...+. .... ..=|..||..|..+.+... ..|..|..++..
T Consensus 23 ~~C~IC~~~~~---~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 23 FRCFICMEKLR---DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp TBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCccCCcccc---CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 56777777664 2344 4556777877776543321 267777777644
No 127
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=69.62 E-value=12 Score=23.89 Aligned_cols=54 Identities=20% Similarity=0.338 Sum_probs=33.7
Q ss_pred CCCCcccccccccccccceeEEeC----CccccccCccccccccccccCCCeeEEeCCccccccceeccccccccccccc
Q psy7479 13 ASGGLKECASCGKRITERFLLKAL----DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACT 88 (170)
Q Consensus 13 ~~~~~~~C~~C~~~I~~~~~~~~~----~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~~~~~C~~C~ 88 (170)
.......|..|+. ++.+|.-. .+.||..|+. |.. ...|.-||..| .|..|+
T Consensus 11 ~~~~~~~C~~C~~---~G~ll~CD~~~Cp~~fH~~Cl~-------L~~------~P~g~W~Cp~c---------~C~~C~ 65 (107)
T 4gne_A 11 KQMHEDYCFQCGD---GGELVMCDKKDCPKAYHLLCLN-------LTQ------PPYGKWECPWH---------QCDECS 65 (107)
T ss_dssp CCSSCSSCTTTCC---CSEEEECCSTTCCCEECTGGGT-------CSS------CCSSCCCCGGG---------BCTTTC
T ss_pred cCCCCCCCCcCCC---CCcEeEECCCCCCcccccccCc-------CCc------CCCCCEECCCC---------CCCcCC
Confidence 3445567999983 34444333 3578988864 431 23567789888 787887
Q ss_pred ccc
Q psy7479 89 KVI 91 (170)
Q Consensus 89 ~~i 91 (170)
+..
T Consensus 66 k~~ 68 (107)
T 4gne_A 66 SAA 68 (107)
T ss_dssp SBC
T ss_pred CCC
Confidence 654
No 128
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=69.10 E-value=9.3 Score=23.11 Aligned_cols=11 Identities=18% Similarity=0.437 Sum_probs=7.1
Q ss_pred cccccCCcccc
Q psy7479 110 FACQQCNHRFC 120 (170)
Q Consensus 110 f~C~~C~~~l~ 120 (170)
+.|..|+..++
T Consensus 52 yFC~~C~~LiS 62 (81)
T 2jrp_A 52 YFCQNGHGLIS 62 (81)
T ss_dssp ECCTTTTCCCC
T ss_pred eeeccCCCEee
Confidence 44777777664
No 129
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=69.08 E-value=0.77 Score=26.46 Aligned_cols=30 Identities=17% Similarity=0.430 Sum_probs=17.2
Q ss_pred eCCccccccceecccccccccccccccccC
Q psy7479 64 KANLILCKRDYLRLFGTTGYCAACTKVIPA 93 (170)
Q Consensus 64 ~~~~~yC~~c~~~~~~~~~~C~~C~~~i~~ 93 (170)
.=|..||..|..+.+.....|..|...+..
T Consensus 34 ~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 34 ECGHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp TTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 345556666665443222377777777754
No 130
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=69.06 E-value=1.8 Score=28.04 Aligned_cols=46 Identities=22% Similarity=0.389 Sum_probs=29.6
Q ss_pred ccccccccccccCCCeeEEeCCccccccceecccccc-cccccccccccC
Q psy7479 45 LKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTT-GYCAACTKVIPA 93 (170)
Q Consensus 45 f~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~~~-~~C~~C~~~i~~ 93 (170)
+.|..|...+. ......=|..||..|..+.+... ..|..|..++..
T Consensus 53 ~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 53 FQCICCQELVF---RPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp TBCTTTSSBCS---SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCcCChHHc---CcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 67778877775 34555677778888876544211 268888777743
No 131
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=68.69 E-value=1.3 Score=30.45 Aligned_cols=46 Identities=13% Similarity=0.310 Sum_probs=29.1
Q ss_pred ccccccccccccCCCeeEEeCCccccccceecccccc-cccccccccccC
Q psy7479 45 LKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTT-GYCAACTKVIPA 93 (170)
Q Consensus 45 f~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~~~-~~C~~C~~~i~~ 93 (170)
|.|..|...+. ..+...-|..||..|..+.+... ..|..|..+|..
T Consensus 19 ~~C~IC~~~~~---~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 19 YECPICLMALR---EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp GBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCChhhc---CcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 56777777765 34556677778887776654211 167777777654
No 132
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.37 E-value=3.6 Score=23.89 Aligned_cols=10 Identities=20% Similarity=0.458 Sum_probs=5.7
Q ss_pred cccccccccc
Q psy7479 83 YCAACTKVIP 92 (170)
Q Consensus 83 ~C~~C~~~i~ 92 (170)
.|..|...|.
T Consensus 62 ~CP~Cr~~~~ 71 (75)
T 1x4j_A 62 TCPICRADSG 71 (75)
T ss_dssp SCTTTCCCCC
T ss_pred cCcCcCCcCC
Confidence 5666665553
No 133
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=65.89 E-value=2.1 Score=26.14 Aligned_cols=48 Identities=15% Similarity=0.253 Sum_probs=25.5
Q ss_pred ccccccccccccCCCeeEEeCCccccccceeccccccccccccccccc
Q psy7479 45 LKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIP 92 (170)
Q Consensus 45 f~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~~~~~C~~C~~~i~ 92 (170)
..|..|...+..........=|..||..|..+.+.....|..|...|.
T Consensus 41 ~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 41 MCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred CCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 456666655542221223445566677666544332236777776664
No 134
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=65.63 E-value=2 Score=27.09 Aligned_cols=46 Identities=28% Similarity=0.547 Sum_probs=26.8
Q ss_pred ccccccccccccCCCeeEEeCCccccccceecccccc---cccccccccccC
Q psy7479 45 LKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTT---GYCAACTKVIPA 93 (170)
Q Consensus 45 f~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~~~---~~C~~C~~~i~~ 93 (170)
+.|..|...+.+ .....=|..||..|..+.+... ..|..|..++..
T Consensus 22 ~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 22 LECPICLELIKE---PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp TSCSSSCCCCSS---CCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCcccChhhcC---eEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 467777666642 2334566777887766544321 157777776644
No 135
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.48 E-value=2.3 Score=25.47 Aligned_cols=30 Identities=17% Similarity=0.473 Sum_probs=17.4
Q ss_pred eCCccccccceeccccc---ccccccccccccC
Q psy7479 64 KANLILCKRDYLRLFGT---TGYCAACTKVIPA 93 (170)
Q Consensus 64 ~~~~~yC~~c~~~~~~~---~~~C~~C~~~i~~ 93 (170)
.=|..||..|..+.+.. ...|..|...+..
T Consensus 36 ~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 36 HCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp SSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 34556677666544321 1278888887744
No 136
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=65.46 E-value=1.8 Score=27.66 Aligned_cols=46 Identities=20% Similarity=0.509 Sum_probs=32.4
Q ss_pred ccccccccccccCCCeeEEeCCccccccceeccccc-ccccccccccccC
Q psy7479 45 LKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGT-TGYCAACTKVIPA 93 (170)
Q Consensus 45 f~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~~-~~~C~~C~~~i~~ 93 (170)
+.|..|...+. ......=|..||..|..+.+.. ...|..|..++..
T Consensus 24 ~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 24 ISCQICEHILA---DPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp TBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCcHhc---CcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 67888877775 3455677888999987655431 1279999888854
No 137
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=63.64 E-value=2.4 Score=28.96 Aligned_cols=48 Identities=19% Similarity=0.348 Sum_probs=33.2
Q ss_pred cCccccccccccccCCCeeEE-eCCccccccceeccccc-ccccccccccccC
Q psy7479 43 DCLKCGCCDCRLGEVGSTLYQ-KANLILCKRDYLRLFGT-TGYCAACTKVIPA 93 (170)
Q Consensus 43 ~Cf~C~~C~~~l~~~~~~~~~-~~~~~yC~~c~~~~~~~-~~~C~~C~~~i~~ 93 (170)
.-+.|..|...+. ..... .=|..||..|..+.+.. ...|..|..+|..
T Consensus 53 ~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLK---NTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCS---SEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhh---CcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 3467888887775 34444 67888999998765432 2379999988853
No 138
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=62.99 E-value=2.5 Score=24.00 Aligned_cols=29 Identities=14% Similarity=0.240 Sum_probs=15.4
Q ss_pred eCCccccccceeccccccccccccccccc
Q psy7479 64 KANLILCKRDYLRLFGTTGYCAACTKVIP 92 (170)
Q Consensus 64 ~~~~~yC~~c~~~~~~~~~~C~~C~~~i~ 92 (170)
.=|..||..|..+.+.....|..|...+.
T Consensus 23 ~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 23 PCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp TTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 34455666665443222226777777664
No 139
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=62.38 E-value=2.9 Score=28.29 Aligned_cols=46 Identities=22% Similarity=0.414 Sum_probs=25.2
Q ss_pred ccccccccccccCCCeeEEeCCccccccceecccccc-cccccccccccC
Q psy7479 45 LKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTT-GYCAACTKVIPA 93 (170)
Q Consensus 45 f~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~~~-~~C~~C~~~i~~ 93 (170)
+.|..|...+. ......=|..||..|..+.+... ..|..|..++..
T Consensus 79 ~~C~IC~~~~~---~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 79 FMCVCCQELVY---QPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp TBCTTTSSBCS---SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CEeecCChhhc---CCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 56666766664 33445566667777665443211 146666666543
No 140
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=62.02 E-value=3.2 Score=23.51 Aligned_cols=46 Identities=13% Similarity=0.106 Sum_probs=34.9
Q ss_pred ccccccccccccCCCeeEE-eCCccccccceecccccccccccccccccC
Q psy7479 45 LKCGCCDCRLGEVGSTLYQ-KANLILCKRDYLRLFGTTGYCAACTKVIPA 93 (170)
Q Consensus 45 f~C~~C~~~l~~~~~~~~~-~~~~~yC~~c~~~~~~~~~~C~~C~~~i~~ 93 (170)
|.|..+...+. ..+.. .+|..|+..+..+.+...++|...++++..
T Consensus 4 ~~CpIs~~~m~---dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 4 MLCAISGKVPR---RPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp CCCTTTCSCCS---SEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred EEecCCCCCCC---CCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 77888888875 45777 799999999887665433478888888865
No 141
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=61.19 E-value=2 Score=28.78 Aligned_cols=45 Identities=18% Similarity=0.336 Sum_probs=34.0
Q ss_pred ccccccccccccCCCeeEEeCCccccccceecccccc-ccccccccccc
Q psy7479 45 LKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTT-GYCAACTKVIP 92 (170)
Q Consensus 45 f~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~~~-~~C~~C~~~i~ 92 (170)
|.|..|...+. ..+...=|..||..|..+..... ..|..|..+|.
T Consensus 32 ~~C~IC~~~~~---~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 32 YLCSACRNVLR---RPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GBCTTTCSBCS---SEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred cCCCCCChhhc---CcEECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 68889988886 34667788999999987765421 27999998764
No 142
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=61.13 E-value=5.7 Score=23.11 Aligned_cols=42 Identities=21% Similarity=0.370 Sum_probs=28.8
Q ss_pred ccccccccccccCCCeeEEeCCcc-ccccceecccccccccccccccccC
Q psy7479 45 LKCGCCDCRLGEVGSTLYQKANLI-LCKRDYLRLFGTTGYCAACTKVIPA 93 (170)
Q Consensus 45 f~C~~C~~~l~~~~~~~~~~~~~~-yC~~c~~~~~~~~~~C~~C~~~i~~ 93 (170)
+.|..|...+. ...+..=|.. +|..|..+. . .|..|..+|..
T Consensus 25 ~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~~--~--~CP~Cr~~i~~ 67 (74)
T 4ic3_A 25 KLCKICMDRNI---AIVFVPCGHLVTCKQCAEAV--D--KCPMCYTVITF 67 (74)
T ss_dssp TBCTTTSSSBC---CEEEETTCCBCCCHHHHTTC--S--BCTTTCCBCSE
T ss_pred CCCCCCCCCCC---CEEEcCCCChhHHHHhhhcC--c--cCCCcCcCccC
Confidence 45666766654 3455566777 888887765 3 89999988843
No 143
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=59.47 E-value=3.4 Score=30.41 Aligned_cols=51 Identities=6% Similarity=-0.050 Sum_probs=37.2
Q ss_pred ccccCccccccccccccCCCeeEEeCCccccccceecccccc-cccccccccccC
Q psy7479 40 WHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTT-GYCAACTKVIPA 93 (170)
Q Consensus 40 ~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~~~-~~C~~C~~~i~~ 93 (170)
--+.-|.|..|...+. .++....|..||..|..+..... ..|+.|+.++..
T Consensus 204 ~~~~~~~c~i~~~~~~---dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 204 DIPDYLCGKISFELMR---EPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CCCSTTBCTTTCSBCS---SEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CCCcccCCcCcCCHhc---CCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 3456789999998886 56777899999999976554211 149999888854
No 144
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=58.42 E-value=1.9 Score=26.18 Aligned_cols=44 Identities=14% Similarity=0.225 Sum_probs=26.6
Q ss_pred ccccccccccccCCCeeEEe-CCccccccceeccccc--ccccccccccc
Q psy7479 45 LKCGCCDCRLGEVGSTLYQK-ANLILCKRDYLRLFGT--TGYCAACTKVI 91 (170)
Q Consensus 45 f~C~~C~~~l~~~~~~~~~~-~~~~yC~~c~~~~~~~--~~~C~~C~~~i 91 (170)
|.|..|...+. ...... =|..||..|..+.+.. ...|..|...+
T Consensus 14 ~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 14 LLCLICKDIMT---DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp TEETTTTEECS---SCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CCCCCCChhhc---CceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 56777776664 234444 3777888887654321 12677777765
No 145
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=55.29 E-value=5.2 Score=33.92 Aligned_cols=88 Identities=16% Similarity=0.326 Sum_probs=54.4
Q ss_pred CCCCCCcccccccccccccceeEEeCCccccccCccccccccccccCCCeeEEeCCcccccccee-cccccccccccccc
Q psy7479 11 GGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYL-RLFGTTGYCAACTK 89 (170)
Q Consensus 11 ~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~-~~~~~~~~C~~C~~ 89 (170)
........+|..|-+.|.+. .++.|+--=..|..||-.+. +....+|=..-.. ..|. .|..|.+
T Consensus 11 ~~i~pD~a~C~~Cl~e~~dp-----~~Rry~YpF~nCt~CGPR~t-------ii~~lPYDR~~TsM~~F~---mC~~C~~ 75 (657)
T 3ttc_A 11 TQIVPDAATCPACLAEMNTP-----GERRYRYPFINCTHCGPRFT-------IIRAMPYDRPFTVMAAFP---LCPACDK 75 (657)
T ss_dssp -CCCCCBCCCHHHHHHHTST-----TSTTTTCTTCCBTTBBCSGG-------GBSSSSCSGGGBGGGGSC---CCHHHHH
T ss_pred cccCCchhhhHHHHHHhcCC-----CCcccCCccccCcCCCchHH-------hcccCCCCCCCCcccCCC---CChHHHH
Confidence 34567788999999999875 25667666678999987654 1222333222111 1122 5666654
Q ss_pred cccCCceEEecCCcccccCccccccCCccc
Q psy7479 90 VIPAFEMVMRAKNNVYHLECFACQQCNHRF 119 (170)
Q Consensus 90 ~i~~~~~~~~~~~~~~H~~Cf~C~~C~~~l 119 (170)
. +-...++.||-.=-.|..|+-.|
T Consensus 76 E------Y~dp~dRRfHAqp~aCp~CGP~l 99 (657)
T 3ttc_A 76 E------YRDPLDRRFHAQPVACPECGPYL 99 (657)
T ss_dssp H------HHCTTSTTTTCTTCCCTTTSCCE
T ss_pred H------hCCCCCCcCcCCCCcCcccCccc
Confidence 2 33455778888877788887766
No 146
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=54.52 E-value=5.5 Score=25.34 Aligned_cols=29 Identities=31% Similarity=0.709 Sum_probs=17.7
Q ss_pred ccccccccccCCceEEec-------C---CcccccCccc
Q psy7479 83 YCAACTKVIPAFEMVMRA-------K---NNVYHLECFA 111 (170)
Q Consensus 83 ~C~~C~~~i~~~~~~~~~-------~---~~~~H~~Cf~ 111 (170)
.|..|+..|.-++.-|.. . ..-||..||.
T Consensus 27 ~Ck~C~~kI~KgelRig~~v~~~~~~g~~~~W~H~~Cf~ 65 (106)
T 2dmj_A 27 SCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFW 65 (106)
T ss_dssp BCSSSCCBCCTTCEEEEEEEEETTTTEEEEEEEETTHHH
T ss_pred cchhhCCccCCCCEEEEEEecCCCCCCCcCEeECcCccc
Confidence 799999988654432211 1 1346888876
No 147
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=54.41 E-value=8.3 Score=33.34 Aligned_cols=86 Identities=19% Similarity=0.363 Sum_probs=52.8
Q ss_pred CCCCcccccccccccccceeEEeCCccccccCccccccccccccCCCeeEEeCCccccccceec-ccccccccccccccc
Q psy7479 13 ASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR-LFGTTGYCAACTKVI 91 (170)
Q Consensus 13 ~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~-~~~~~~~C~~C~~~i 91 (170)
.+....+|..|-+.|.+. .++.|+--=..|..||-.+. +....+|=..-... .|. .|..|.+
T Consensus 102 i~pD~a~C~~Cl~e~~dp-----~~rry~ypF~nCt~CGPR~t-------ii~~lPYDR~~TsM~~F~---mC~~C~~-- 164 (772)
T 4g9i_A 102 IPPDIAICDDCLRELFDP-----TNKRYMYPFIVCTNCGPRFT-------IIEDLPYDRENTTMKEFP---MCDFCRS-- 164 (772)
T ss_dssp CCCCCCCCHHHHHHHSST-----TSTTTTCTTCCCTTSSCCGG-------GCCSSSCCGGGSGGGGSC---CCHHHHH--
T ss_pred cCCchhhhHHHHHHhcCC-----CCCccCCccccCCCCCchhh-------hhhcCCCCCCCCcCCCCC---CChhHHH--
Confidence 456778899999998775 25666655568888987654 11223322211111 122 5766754
Q ss_pred cCCceEEecCCcccccCccccccCCccc
Q psy7479 92 PAFEMVMRAKNNVYHLECFACQQCNHRF 119 (170)
Q Consensus 92 ~~~~~~~~~~~~~~H~~Cf~C~~C~~~l 119 (170)
++-...++.||-.=-.|..|+-.|
T Consensus 165 ----EY~dp~dRRfhAqp~aC~~CGP~l 188 (772)
T 4g9i_A 165 ----EYEDPLNRRYHAEPTACPVCGPSY 188 (772)
T ss_dssp ----HHHCSSSTTTTCTTCCCTTTSCCE
T ss_pred ----HhCCCCCCCCcCCCCCCccCCceE
Confidence 233455778888877888888765
No 148
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=53.53 E-value=5.9 Score=25.64 Aligned_cols=29 Identities=21% Similarity=0.407 Sum_probs=17.5
Q ss_pred ccccccccccCCceEEec-------C---CcccccCccc
Q psy7479 83 YCAACTKVIPAFEMVMRA-------K---NNVYHLECFA 111 (170)
Q Consensus 83 ~C~~C~~~i~~~~~~~~~-------~---~~~~H~~Cf~ 111 (170)
.|..|+..|.-++.-|.. . ..-||..||.
T Consensus 22 ~Ck~Ck~kI~KgeLRiG~~v~~~~~dG~~~~W~H~~Cf~ 60 (114)
T 1v9x_A 22 SCKTCKSVINKENFRLGKLVQSTHFDGIMPMWNHASCIL 60 (114)
T ss_dssp BCSSSCCBCCSSSEEEEECCCCSSSSCCCCEEEEHHHHH
T ss_pred CchhhCCccCCCCEEEEEEecCcccCCCcceeECccccc
Confidence 788888888654432221 1 2346888876
No 149
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=53.42 E-value=4.9 Score=29.49 Aligned_cols=15 Identities=20% Similarity=0.514 Sum_probs=9.8
Q ss_pred Ccccccccccccccc
Q psy7479 16 GLKECASCGKRITER 30 (170)
Q Consensus 16 ~~~~C~~C~~~I~~~ 30 (170)
....|..|...|..+
T Consensus 179 ~i~~C~iC~~iv~~g 193 (238)
T 3nw0_A 179 AVKICNICHSLLIQG 193 (238)
T ss_dssp TCCBCTTTCSBCSSC
T ss_pred CCCcCcchhhHHhCC
Confidence 456677777776644
No 150
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=52.08 E-value=6.7 Score=21.92 Aligned_cols=49 Identities=18% Similarity=0.377 Sum_probs=29.3
Q ss_pred cccccccc-ccccCCCe-eEEeCCccccccceecccc-cccccccccccccC
Q psy7479 45 LKCGCCDC-RLGEVGST-LYQKANLILCKRDYLRLFG-TTGYCAACTKVIPA 93 (170)
Q Consensus 45 f~C~~C~~-~l~~~~~~-~~~~~~~~yC~~c~~~~~~-~~~~C~~C~~~i~~ 93 (170)
+.|..|.. .+...... ....=|..||..|..+.+. ....|..|++++..
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 45667766 44321111 2345677888888766532 11279999988865
No 151
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.17 E-value=4.8 Score=21.77 Aligned_cols=12 Identities=25% Similarity=0.678 Sum_probs=5.7
Q ss_pred cccccccccccc
Q psy7479 18 KECASCGKRITE 29 (170)
Q Consensus 18 ~~C~~C~~~I~~ 29 (170)
..|..|...+.+
T Consensus 16 ~~C~IC~~~~~~ 27 (58)
T 2ecj_A 16 ASCSVCLEYLKE 27 (58)
T ss_dssp CBCSSSCCBCSS
T ss_pred CCCccCCcccCc
Confidence 345555544433
No 152
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.89 E-value=5.2 Score=23.32 Aligned_cols=42 Identities=21% Similarity=0.370 Sum_probs=26.9
Q ss_pred ccccccccccccCCCeeEEeCCcc-ccccceecccccccccccccccccC
Q psy7479 45 LKCGCCDCRLGEVGSTLYQKANLI-LCKRDYLRLFGTTGYCAACTKVIPA 93 (170)
Q Consensus 45 f~C~~C~~~l~~~~~~~~~~~~~~-yC~~c~~~~~~~~~~C~~C~~~i~~ 93 (170)
+.|..|...+. ...+..=|.. +|..|..+. . .|..|..+|..
T Consensus 26 ~~C~IC~~~~~---~~~~~pCgH~~~C~~C~~~~--~--~CP~Cr~~i~~ 68 (75)
T 2ecg_A 26 KLCKICMDRNI---AIVFVPCGHLVTCKQCAEAV--D--KCPMCYTVITF 68 (75)
T ss_dssp HSCSSSCSSCC---CBCCSSSCCCCBCHHHHHHC--S--BCTTTCCBCCC
T ss_pred CCCCcCCCCCC---CEEEecCCCHHHHHHHhhCC--C--CCccCCceecC
Confidence 35666655553 2234455666 888887644 2 89999988854
No 153
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=48.33 E-value=7.3 Score=22.39 Aligned_cols=27 Identities=19% Similarity=0.443 Sum_probs=17.0
Q ss_pred ccccccccccCCceEEecC---CcccccCc
Q psy7479 83 YCAACTKVIPAFEMVMRAK---NNVYHLEC 109 (170)
Q Consensus 83 ~C~~C~~~i~~~~~~~~~~---~~~~H~~C 109 (170)
.|..|++++.+++..|.-. ..-||..|
T Consensus 10 ~C~~C~~p~~~~~~mI~CD~~C~~WfH~~C 39 (65)
T 2vpb_A 10 PCGICTNEVNDDQDAILCEASCQKWFHRIC 39 (65)
T ss_dssp BCTTTCSBCCTTSCEEEBTTTTCCEEEHHH
T ss_pred cCccCCCccCCCCCeEecccCccccCchhc
Confidence 6888888876544455544 44567555
No 154
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=47.06 E-value=5.6 Score=27.87 Aligned_cols=49 Identities=6% Similarity=-0.011 Sum_probs=36.2
Q ss_pred ccCccccccccccccCCCeeEEeCCccccccceecccccc-cccccccccccC
Q psy7479 42 EDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTT-GYCAACTKVIPA 93 (170)
Q Consensus 42 ~~Cf~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~~~-~~C~~C~~~i~~ 93 (170)
+.-|.|..|...+. .++....|..||..|..+.+... ..|+.|+.++..
T Consensus 104 p~~f~CPI~~elm~---DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMR---EPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCC---CCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 66789999988886 46778899999999876543210 158888888754
No 155
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=46.95 E-value=19 Score=19.62 Aligned_cols=32 Identities=9% Similarity=0.190 Sum_probs=21.3
Q ss_pred cccccCCcccccCCeEEEeCCeeccHHhHHHH
Q psy7479 110 FACQQCNHRFCVGDRFYLCDNKILCEYDYEER 141 (170)
Q Consensus 110 f~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~ 141 (170)
.+|+.|++.-........-.+...|..|-...
T Consensus 12 ~~CSFCGk~~~ev~~LIaGpgv~IC~eCi~~~ 43 (51)
T 2ds5_A 12 LYCSFCGKSQHEVRKLIAGPSVYICDECVDLC 43 (51)
T ss_dssp CBCTTTCCBTTTSSCEEECSSCEEEHHHHHHH
T ss_pred cEecCCCCCHHHhcccCCCCCCEehHHHHHHH
Confidence 36899998864444444445667899997653
No 156
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A*
Probab=46.05 E-value=6.4 Score=25.55 Aligned_cols=14 Identities=29% Similarity=0.755 Sum_probs=10.6
Q ss_pred ccccccccccCCce
Q psy7479 83 YCAACTKVIPAFEM 96 (170)
Q Consensus 83 ~C~~C~~~i~~~~~ 96 (170)
.|..|++.|.-++.
T Consensus 40 ~Ck~C~~kI~KgeL 53 (116)
T 3od8_A 40 SCKKCSESIPKDSL 53 (116)
T ss_dssp BCTTTCCBCCTTSE
T ss_pred cCcccCCccCCCCE
Confidence 79999999965443
No 157
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=45.61 E-value=17 Score=20.89 Aligned_cols=16 Identities=25% Similarity=0.499 Sum_probs=10.8
Q ss_pred CCCccccccccccccc
Q psy7479 14 SGGLKECASCGKRITE 29 (170)
Q Consensus 14 ~~~~~~C~~C~~~I~~ 29 (170)
......|..|++.+.-
T Consensus 12 ~~~~~rC~~C~kkvgl 27 (64)
T 1wg2_A 12 VRPNNRCFSCNKKVGV 27 (64)
T ss_dssp SCCSCSCTTTCCCCTT
T ss_pred CCcCCcChhhCCcccc
Confidence 3345779999887543
No 158
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=45.20 E-value=7.9 Score=22.05 Aligned_cols=42 Identities=24% Similarity=0.339 Sum_probs=20.5
Q ss_pred CCCCcccccccccccccceeEEeCCcccc--ccCccccccccccc
Q psy7479 13 ASGGLKECASCGKRITERFLLKALDLFWH--EDCLKCGCCDCRLG 55 (170)
Q Consensus 13 ~~~~~~~C~~C~~~I~~~~~~~~~~~~~H--~~Cf~C~~C~~~l~ 55 (170)
.....-.|..|++.......+.. -...| ..=|+|..|++.+.
T Consensus 14 ~~~~~~~C~~C~~~f~~~~~l~~-H~~~h~~~~~~~C~~C~~~f~ 57 (77)
T 2cot_A 14 RERRRYKCDECGKSFSHSSDLSK-HRRTHTGEKPYKCDECGKAFI 57 (77)
T ss_dssp CCSCSSBCSSSCCBCSCHHHHHH-HHTTTCCSCSEECSSSCCEES
T ss_pred CCCCCEECCCCCcccCCHHHHHH-HHHHcCCCcCeeCCCCCCccC
Confidence 33445567778777654421111 00112 12366777766653
No 159
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A
Probab=45.00 E-value=7.3 Score=25.05 Aligned_cols=13 Identities=23% Similarity=0.506 Sum_probs=9.8
Q ss_pred ccccccccccCCc
Q psy7479 83 YCAACTKVIPAFE 95 (170)
Q Consensus 83 ~C~~C~~~i~~~~ 95 (170)
.|..|+..|.-++
T Consensus 21 ~Ck~C~~kI~Kg~ 33 (111)
T 3odc_A 21 TCKGCMEKIEKGQ 33 (111)
T ss_dssp BCTTTCCBCCTTC
T ss_pred cccccCCCccCCc
Confidence 7888888886543
No 160
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=44.04 E-value=16 Score=19.09 Aligned_cols=19 Identities=21% Similarity=0.447 Sum_probs=14.0
Q ss_pred CCCCcccccccccccccce
Q psy7479 13 ASGGLKECASCGKRITERF 31 (170)
Q Consensus 13 ~~~~~~~C~~C~~~I~~~~ 31 (170)
......+|.+|++||.-..
T Consensus 13 ~~~~YRvC~~CgkPi~lsA 31 (44)
T 2lo3_A 13 KPIQYRVCEKCGKPLALTA 31 (44)
T ss_dssp CCCCEEECTTTCCEEETTT
T ss_pred ccccchhhcccCCcchHHH
Confidence 4556678999999986553
No 161
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=43.98 E-value=20 Score=22.39 Aligned_cols=36 Identities=19% Similarity=0.430 Sum_probs=22.8
Q ss_pred ccccCccccccCCc-ccccCCeEEEe--CCeeccHHhHHHH
Q psy7479 104 VYHLECFACQQCNH-RFCVGDRFYLC--DNKILCEYDYEER 141 (170)
Q Consensus 104 ~~H~~Cf~C~~C~~-~l~~~~~~~~~--~~~~~C~~c~~~~ 141 (170)
..|.. +.|..|++ +| .|.+|.-. .+.-+|..||...
T Consensus 27 ~~H~g-v~Cd~C~~~pI-~G~RykC~~C~d~DLC~~C~~~~ 65 (98)
T 2dip_A 27 DKHLG-IPCNNCKQFPI-EGKCYKCTECIEYHLCQECFDSY 65 (98)
T ss_dssp SSCCC-CCCSSSCCSSC-CSCEEEESSSSSCEEEHHHHHTT
T ss_pred cccCC-CCCcCCCCCCc-ccCeEECCCCCCccHHHHHHccC
Confidence 35554 66777775 45 56666543 3556899998864
No 162
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=42.96 E-value=20 Score=20.78 Aligned_cols=32 Identities=9% Similarity=0.190 Sum_probs=21.6
Q ss_pred cccccCCcccccCCeEEEeCCeeccHHhHHHH
Q psy7479 110 FACQQCNHRFCVGDRFYLCDNKILCEYDYEER 141 (170)
Q Consensus 110 f~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~ 141 (170)
..|+.|++.-........-.+..+|..|....
T Consensus 19 ~~CSFCGK~e~eV~~LIaGpgvyICdeCI~~c 50 (67)
T 1ovx_A 19 LYCSFCGKSQHEVRKLIAGPSVYICDECVDLC 50 (67)
T ss_dssp CCCTTTCCCTTTSSSEEECSSCEEEHHHHHHH
T ss_pred cEecCCCCCHHHHcccCCCCCCChhHHHHHHH
Confidence 36899998864444444445667899998654
No 163
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12
Probab=42.82 E-value=10 Score=24.57 Aligned_cols=17 Identities=24% Similarity=0.646 Sum_probs=13.2
Q ss_pred CCCcccccccccccccc
Q psy7479 14 SGGLKECASCGKRITER 30 (170)
Q Consensus 14 ~~~~~~C~~C~~~I~~~ 30 (170)
.++...|.+|++.|.-+
T Consensus 12 kSgRA~Ck~C~~kI~Kg 28 (117)
T 1uw0_A 12 KRGTAGCKKCKEKIVKG 28 (117)
T ss_dssp CSSCEECTTSSCEECTT
T ss_pred CCCCccchhhCcccCCC
Confidence 44567899999999766
No 164
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=40.35 E-value=7.7 Score=23.56 Aligned_cols=19 Identities=21% Similarity=0.434 Sum_probs=10.8
Q ss_pred CCCCCcccccccccccccc
Q psy7479 12 GASGGLKECASCGKRITER 30 (170)
Q Consensus 12 ~~~~~~~~C~~C~~~I~~~ 30 (170)
......-.|..|++.....
T Consensus 12 ~~~~~~~~C~~C~~~f~~~ 30 (106)
T 2ee8_A 12 SKTKKEFICKFCGRHFTKS 30 (106)
T ss_dssp CCCCCCCBCSSSCCBCSSH
T ss_pred cCCCcCeECCCCCCccCCH
Confidence 3344455677777666543
No 165
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=40.29 E-value=18 Score=31.16 Aligned_cols=87 Identities=16% Similarity=0.413 Sum_probs=51.6
Q ss_pred CCCCCcccccccccccccceeEEeCCccccccCccccccccccccCCCeeEEeCCccccccceec-cccccccccccccc
Q psy7479 12 GASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR-LFGTTGYCAACTKV 90 (170)
Q Consensus 12 ~~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~-~~~~~~~C~~C~~~ 90 (170)
.......+|..|-+.|.+. .++.|+--=..|..||-.+. +....+|=..-... .|. .|..|.+.
T Consensus 106 ~i~pD~a~C~~Cl~e~~dp-----~~Rry~ypF~nCt~CGPR~t-------ii~~lPYDR~~TsM~~F~---mC~~C~~E 170 (761)
T 3vth_A 106 PVSPDMGVCEDCLRELKDP-----KDRRYRYPFINCTNCGPRFS-------IIEDIPYDRAKTSMKVFP---MCEKCSRE 170 (761)
T ss_dssp CCCCCBCCCHHHHHHHTCT-----TSTTTTCTTCCBTTBBCSGG-------GBCSSSCCGGGBGGGGSC---CCHHHHHH
T ss_pred ccCCCccccHHHHHHhcCC-----CccccCCCcccCCCCCcchh-------hhccCCCCCCCCccccCC---CCHHHHHH
Confidence 3456778999999998875 25666666678999986654 11222322111111 122 56666542
Q ss_pred ccCCceEEecCCcccccCccccccCCccc
Q psy7479 91 IPAFEMVMRAKNNVYHLECFACQQCNHRF 119 (170)
Q Consensus 91 i~~~~~~~~~~~~~~H~~Cf~C~~C~~~l 119 (170)
+-...++.||-.=-.|..|+-.|
T Consensus 171 ------Y~dp~~RRfhAqp~aC~~CGP~l 193 (761)
T 3vth_A 171 ------YHDPHDRRFHAQPVACFDCGPSL 193 (761)
T ss_dssp ------HTCTTSTTTTCTTCCCTTTSCCE
T ss_pred ------hcCcccccccCCCCcCCccCCee
Confidence 22345677777777777777655
No 166
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.92 E-value=28 Score=21.07 Aligned_cols=33 Identities=9% Similarity=-0.016 Sum_probs=26.0
Q ss_pred ccccccCCcccccCCeEEE-eCCeeccHHhHHHHhh
Q psy7479 109 CFACQQCNHRFCVGDRFYL-CDNKILCEYDYEERQV 143 (170)
Q Consensus 109 Cf~C~~C~~~l~~~~~~~~-~~~~~~C~~c~~~~~~ 143 (170)
=|.|..|...+ .+.+.. ..|..||+.|..+.+.
T Consensus 7 ~~~CPI~~~~~--~dPV~~~~cGh~f~r~cI~~~l~ 40 (94)
T 2yu4_A 7 GFTCPITKEEM--KKPVKNKVCGHTYEEDAIVRMIE 40 (94)
T ss_dssp CCBCTTTCSBC--SSEEEESSSCCEEEHHHHHHHHH
T ss_pred EeECcCcCchh--cCCEEcCCCCCeecHHHHHHHHH
Confidence 37799998887 457777 4899999999877654
No 167
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.05 E-value=34 Score=20.20 Aligned_cols=28 Identities=25% Similarity=0.484 Sum_probs=14.6
Q ss_pred ccccccccccCCceEEe--cCCcccccCccc
Q psy7479 83 YCAACTKVIPAFEMVMR--AKNNVYHLECFA 111 (170)
Q Consensus 83 ~C~~C~~~i~~~~~~~~--~~~~~~H~~Cf~ 111 (170)
.|..|++.-.+. .++. .=+..||..|..
T Consensus 28 ~C~vC~~~~~~~-~ll~CD~C~~~yH~~Cl~ 57 (77)
T 2e6s_A 28 SCRVCGGKHEPN-MQLLCDECNVAYHIYCLN 57 (77)
T ss_dssp SCSSSCCCCCST-TEEECSSSCCEEETTSSS
T ss_pred CCcCcCCcCCCC-CEEEcCCCCccccccccC
Confidence 466676543332 2322 224568877754
No 168
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=36.44 E-value=22 Score=20.86 Aligned_cols=41 Identities=15% Similarity=0.281 Sum_probs=27.8
Q ss_pred cccccccccccCCCeeEEeCCcc-ccccceecccccccccccccccccC
Q psy7479 46 KCGCCDCRLGEVGSTLYQKANLI-LCKRDYLRLFGTTGYCAACTKVIPA 93 (170)
Q Consensus 46 ~C~~C~~~l~~~~~~~~~~~~~~-yC~~c~~~~~~~~~~C~~C~~~i~~ 93 (170)
.|..|..... ...+..=|.. +|..|..+.. .|..|..+|..
T Consensus 20 ~C~IC~~~~~---~~v~~pCgH~~~C~~C~~~~~----~CP~Cr~~i~~ 61 (79)
T 2yho_A 20 LCMVCCEEEI---NSTFCPCGHTVCCESCAAQLQ----SCPVCRSRVEH 61 (79)
T ss_dssp BCTTTSSSBC---CEEEETTCBCCBCHHHHTTCS----BCTTTCCBCCE
T ss_pred EeEEeCcccC---cEEEECCCCHHHHHHHHHhcC----cCCCCCchhhC
Confidence 4666655553 3455666776 8888877652 79999988854
No 169
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.73 E-value=29 Score=20.54 Aligned_cols=17 Identities=12% Similarity=0.257 Sum_probs=11.3
Q ss_pred CCCCccccccccccccc
Q psy7479 13 ASGGLKECASCGKRITE 29 (170)
Q Consensus 13 ~~~~~~~C~~C~~~I~~ 29 (170)
.......|..|......
T Consensus 11 ~~~~~~~C~IC~~~~~~ 27 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDD 27 (80)
T ss_dssp CCTTSCCCSSSCCCCCS
T ss_pred CCCCCCCCeEcCccccC
Confidence 34455779999876643
No 170
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=35.18 E-value=13 Score=21.93 Aligned_cols=29 Identities=28% Similarity=0.642 Sum_probs=16.5
Q ss_pred CCccccccceecccc-cccccccccccccC
Q psy7479 65 ANLILCKRDYLRLFG-TTGYCAACTKVIPA 93 (170)
Q Consensus 65 ~~~~yC~~c~~~~~~-~~~~C~~C~~~i~~ 93 (170)
=|..+|..|+.+... ....|..|.+++..
T Consensus 33 CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 33 CGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp TSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred CCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 345566666554421 01278888887754
No 171
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.71 E-value=21 Score=20.33 Aligned_cols=28 Identities=14% Similarity=0.359 Sum_probs=18.0
Q ss_pred EEeCCcc-ccccceecccccccccccccccccC
Q psy7479 62 YQKANLI-LCKRDYLRLFGTTGYCAACTKVIPA 93 (170)
Q Consensus 62 ~~~~~~~-yC~~c~~~~~~~~~~C~~C~~~i~~ 93 (170)
+..=|.. +|..|.... . .|..|..+|..
T Consensus 30 ~~pCgH~~~C~~C~~~~--~--~CP~CR~~i~~ 58 (68)
T 2ea5_A 30 LLPCRHTCLCDGCVKYF--Q--QCPMCRQFVQE 58 (68)
T ss_dssp ETTTTBCCSCTTHHHHC--S--SCTTTCCCCCC
T ss_pred EECCCChhhhHHHHhcC--C--CCCCCCcchhc
Confidence 3444444 677776643 2 89999988854
No 172
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.59 E-value=26 Score=19.09 Aligned_cols=30 Identities=13% Similarity=0.240 Sum_probs=14.5
Q ss_pred ccccccccccccCCCeeEEeCCccccccceecc
Q psy7479 45 LKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 77 (170)
Q Consensus 45 f~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~ 77 (170)
+.|..|...+. ......=|..||..|..+.
T Consensus 21 ~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~ 50 (63)
T 2ysj_A 21 VICPICLDILQ---KPVTIDCGHNFCLKCITQI 50 (63)
T ss_dssp CBCTTTCSBCS---SCEECTTSSEECHHHHHHH
T ss_pred CCCCcCCchhC---CeEEeCCCCcchHHHHHHH
Confidence 34555554443 2233345555666665443
No 173
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=33.57 E-value=9.6 Score=22.05 Aligned_cols=14 Identities=29% Similarity=0.821 Sum_probs=11.3
Q ss_pred eCCeeccHHhHHHH
Q psy7479 128 CDNKILCEYDYEER 141 (170)
Q Consensus 128 ~~~~~~C~~c~~~~ 141 (170)
-++.+||..||...
T Consensus 25 CdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 25 CDGDLYCARCFREG 38 (67)
T ss_dssp TTSEEECSSHHHHH
T ss_pred CCCceehHHHHHHH
Confidence 35778999999875
No 174
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=32.64 E-value=19 Score=22.22 Aligned_cols=12 Identities=25% Similarity=0.254 Sum_probs=8.4
Q ss_pred eeccHHhHHHHh
Q psy7479 131 KILCEYDYEERQ 142 (170)
Q Consensus 131 ~~~C~~c~~~~~ 142 (170)
.++|+.||+-..
T Consensus 43 FPvCrpCyEYEr 54 (93)
T 1weo_A 43 FPACRPCYEYER 54 (93)
T ss_dssp CCCCHHHHHHHH
T ss_pred ChhhHHHHHHHH
Confidence 456999997544
No 175
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=32.42 E-value=12 Score=18.91 Aligned_cols=16 Identities=25% Similarity=0.515 Sum_probs=9.5
Q ss_pred CCcccccccccccccc
Q psy7479 15 GGLKECASCGKRITER 30 (170)
Q Consensus 15 ~~~~~C~~C~~~I~~~ 30 (170)
...-.|..|++.....
T Consensus 10 ~k~~~C~~C~k~f~~~ 25 (48)
T 2epr_A 10 RKQVACEICGKIFRDV 25 (48)
T ss_dssp CCSEEETTTTEEESSH
T ss_pred CcCeeCCCCCcccCCH
Confidence 3345677777766544
No 176
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=32.01 E-value=48 Score=19.57 Aligned_cols=16 Identities=25% Similarity=0.607 Sum_probs=9.2
Q ss_pred CCCccccccccccccc
Q psy7479 14 SGGLKECASCGKRITE 29 (170)
Q Consensus 14 ~~~~~~C~~C~~~I~~ 29 (170)
......|..|++.+.-
T Consensus 22 k~~~~RC~~C~kkvgL 37 (74)
T 1wfp_A 22 KSTATRCLSCNKKVGV 37 (74)
T ss_dssp TCCCCBCSSSCCBCTT
T ss_pred cccCccchhhcCcccc
Confidence 3345667777765443
No 177
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=30.53 E-value=18 Score=15.13 Aligned_cols=10 Identities=30% Similarity=1.112 Sum_probs=7.5
Q ss_pred cccccCCccc
Q psy7479 110 FACQQCNHRF 119 (170)
Q Consensus 110 f~C~~C~~~l 119 (170)
|.|..|++.+
T Consensus 2 ~~C~~C~k~f 11 (27)
T 1znf_A 2 YKCGLCERSF 11 (27)
T ss_dssp CBCSSSCCBC
T ss_pred ccCCCCCCcC
Confidence 5677888776
No 178
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis, apoptosis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.19 E-value=18 Score=23.98 Aligned_cols=13 Identities=23% Similarity=0.506 Sum_probs=10.0
Q ss_pred ccccccccccCCc
Q psy7479 83 YCAACTKVIPAFE 95 (170)
Q Consensus 83 ~C~~C~~~i~~~~ 95 (170)
.|..|+..|.-++
T Consensus 29 ~CK~C~~kI~Kge 41 (134)
T 2cs2_A 29 TCKGCMEKIEKGQ 41 (134)
T ss_dssp BCSSSCCBCCTTS
T ss_pred cchhcCCcccCCC
Confidence 7888998886544
No 179
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=29.91 E-value=52 Score=19.40 Aligned_cols=12 Identities=25% Similarity=0.703 Sum_probs=7.5
Q ss_pred cccccccccccc
Q psy7479 17 LKECASCGKRIT 28 (170)
Q Consensus 17 ~~~C~~C~~~I~ 28 (170)
...|..|++.+.
T Consensus 25 ~nRC~~CrKkvg 36 (74)
T 1wfl_A 25 KNRCFMCRKKVG 36 (74)
T ss_dssp TTBCSSSCCBCG
T ss_pred CCcChhhCCccc
Confidence 446777777554
No 180
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=29.07 E-value=16 Score=15.40 Aligned_cols=10 Identities=40% Similarity=1.062 Sum_probs=7.9
Q ss_pred cccccCCccc
Q psy7479 110 FACQQCNHRF 119 (170)
Q Consensus 110 f~C~~C~~~l 119 (170)
|.|..|++.+
T Consensus 4 ~~C~~C~k~f 13 (27)
T 2kvh_A 4 FSCSLCPQRS 13 (27)
T ss_dssp EECSSSSCEE
T ss_pred ccCCCcChhh
Confidence 6788888877
No 181
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=28.87 E-value=19 Score=15.26 Aligned_cols=10 Identities=40% Similarity=1.258 Sum_probs=7.9
Q ss_pred cccccCCccc
Q psy7479 110 FACQQCNHRF 119 (170)
Q Consensus 110 f~C~~C~~~l 119 (170)
|.|..|++.+
T Consensus 3 ~~C~~C~~~f 12 (29)
T 1ard_A 3 FVCEVCTRAF 12 (29)
T ss_dssp CBCTTTCCBC
T ss_pred eECCCCCccc
Confidence 6788888877
No 182
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=28.73 E-value=18 Score=19.25 Aligned_cols=7 Identities=29% Similarity=1.094 Sum_probs=3.5
Q ss_pred ccccccc
Q psy7479 46 KCGCCDC 52 (170)
Q Consensus 46 ~C~~C~~ 52 (170)
.|..|+.
T Consensus 7 ~CP~C~~ 13 (50)
T 1pft_A 7 VCPACES 13 (50)
T ss_dssp SCTTTSC
T ss_pred eCcCCCC
Confidence 4555544
No 183
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=28.15 E-value=43 Score=18.70 Aligned_cols=37 Identities=24% Similarity=0.550 Sum_probs=23.8
Q ss_pred CCCCCcccccc--cccccccceeEEeCCccccccCccccccccc
Q psy7479 12 GASGGLKECAS--CGKRITERFLLKALDLFWHEDCLKCGCCDCR 53 (170)
Q Consensus 12 ~~~~~~~~C~~--C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~ 53 (170)
+.......|.+ |+-.|..--.+...++.| +|..|+..
T Consensus 4 ~~~~~pvRC~r~~CraylNP~~~~~~~~~~W-----~C~~C~~~ 42 (59)
T 2yrc_A 4 GSSGEPVLCSRTTCRAVLNPLCQVDYRAKLW-----ACNFCYQR 42 (59)
T ss_dssp SSCCCCCBCSCTTTCCBCCTTSEEEGGGTEE-----ECSSSCCE
T ss_pred cCCCCCcccCCCCCCeEECCceEEECCCCEE-----EcccCCCc
Confidence 34556678887 888877653344455666 67777654
No 184
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=27.91 E-value=18 Score=25.52 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=18.8
Q ss_pred ccccccCCcccccCCeEEEeCCeeccHHhHHH
Q psy7479 109 CFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 140 (170)
Q Consensus 109 Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~ 140 (170)
=..|..|+...... |+.+|..|+.+
T Consensus 163 ~~~C~~CGE~~~~~-------g~~~C~~C~~~ 187 (191)
T 3d00_A 163 IVLCPQCREAYPAQ-------DGELCLSCQGG 187 (191)
T ss_dssp EEECTTTCCEEEGG-------GCSSCHHHHTT
T ss_pred CEECCcCCCChhhC-------CCcCCccccCC
Confidence 34699998877332 89999999864
No 185
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=27.62 E-value=43 Score=25.87 Aligned_cols=42 Identities=19% Similarity=0.444 Sum_probs=31.2
Q ss_pred ccccccccccccCCCeeEEeCCcc-ccccceecccccccccccccccccC
Q psy7479 45 LKCGCCDCRLGEVGSTLYQKANLI-LCKRDYLRLFGTTGYCAACTKVIPA 93 (170)
Q Consensus 45 f~C~~C~~~l~~~~~~~~~~~~~~-yC~~c~~~~~~~~~~C~~C~~~i~~ 93 (170)
+.|..|-..+. ...+..=|.. +|..|.... . .|..|..+|..
T Consensus 296 ~~C~IC~~~~~---~~v~lpCgH~~fC~~C~~~~--~--~CP~CR~~i~~ 338 (345)
T 3t6p_A 296 RTCKVCMDKEV---SVVFIPCGHLVVCQECAPSL--R--KCPICRGIIKG 338 (345)
T ss_dssp CBCTTTSSSBC---CEEEETTCCEEECTTTGGGC--S--BCTTTCCBCCE
T ss_pred CCCCccCCcCC---ceEEcCCCChhHhHHHHhcC--C--cCCCCCCCccC
Confidence 67777877664 3456677777 999998766 3 89999998843
No 186
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=27.58 E-value=48 Score=19.82 Aligned_cols=33 Identities=15% Similarity=0.285 Sum_probs=20.2
Q ss_pred cccccCCcccccCCeEEEe-CCeeccHHhHHHHh
Q psy7479 110 FACQQCNHRFCVGDRFYLC-DNKILCEYDYEERQ 142 (170)
Q Consensus 110 f~C~~C~~~l~~~~~~~~~-~~~~~C~~c~~~~~ 142 (170)
+.|..|-..+....-+.+. =|..||..|+.+-+
T Consensus 6 ~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~ 39 (94)
T 1wim_A 6 SGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYV 39 (94)
T ss_dssp CCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHH
T ss_pred cCCcccCcccccccceEcCCCCCcccHHHHHHHH
Confidence 4577777666322223333 38889999986554
No 187
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=27.53 E-value=13 Score=22.35 Aligned_cols=14 Identities=21% Similarity=0.731 Sum_probs=7.8
Q ss_pred cccccccccccccc
Q psy7479 17 LKECASCGKRITER 30 (170)
Q Consensus 17 ~~~C~~C~~~I~~~ 30 (170)
.-+|..|++.....
T Consensus 28 ~h~C~~Cgk~F~~~ 41 (85)
T 2lv2_A 28 CHLCPVCGESFASK 41 (85)
T ss_dssp TEECTTSCCEESSH
T ss_pred CEECCCCCCCcCcH
Confidence 34566666665443
No 188
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=33.49 E-value=13 Score=15.59 Aligned_cols=10 Identities=40% Similarity=1.467 Sum_probs=7.3
Q ss_pred cccccCCccc
Q psy7479 110 FACQQCNHRF 119 (170)
Q Consensus 110 f~C~~C~~~l 119 (170)
|.|..|++.+
T Consensus 3 ~~C~~C~k~f 12 (26)
T 2lvu_A 3 YVCERCGKRF 12 (26)
Confidence 5677787776
No 189
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=26.90 E-value=36 Score=21.34 Aligned_cols=27 Identities=22% Similarity=0.518 Sum_probs=15.5
Q ss_pred ccccccccccCCceEEecC---CcccccCc
Q psy7479 83 YCAACTKVIPAFEMVMRAK---NNVYHLEC 109 (170)
Q Consensus 83 ~C~~C~~~i~~~~~~~~~~---~~~~H~~C 109 (170)
.|..|+++...++..|.-. ..-||..|
T Consensus 5 ~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~C 34 (105)
T 2xb1_A 5 PCGACRSEVNDDQDAILCEASCQKWFHREC 34 (105)
T ss_dssp BCTTTCSBCCTTSCEEECTTTTCCEEEGGG
T ss_pred CCCCCCCccCCCCCEEEecCCccccccccc
Confidence 5777877764443444443 34467655
No 190
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=26.37 E-value=22 Score=15.21 Aligned_cols=10 Identities=50% Similarity=1.288 Sum_probs=7.9
Q ss_pred cccccCCccc
Q psy7479 110 FACQQCNHRF 119 (170)
Q Consensus 110 f~C~~C~~~l 119 (170)
|.|..|++.+
T Consensus 3 ~~C~~C~k~f 12 (30)
T 1paa_A 3 YACGLCNRAF 12 (30)
T ss_dssp SBCTTTCCBC
T ss_pred cCCcccCccc
Confidence 6788888877
No 191
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=25.60 E-value=38 Score=25.27 Aligned_cols=32 Identities=16% Similarity=0.173 Sum_probs=22.3
Q ss_pred CccccccccccccCCCeeEE-eCCccccccceeccc
Q psy7479 44 CLKCGCCDCRLGEVGSTLYQ-KANLILCKRDYLRLF 78 (170)
Q Consensus 44 Cf~C~~C~~~l~~~~~~~~~-~~~~~yC~~c~~~~~ 78 (170)
=|+|..|...+. ..+.. .-|..||..|..+..
T Consensus 181 el~CPIcl~~f~---DPVts~~CGHsFcR~cI~~~~ 213 (267)
T 3htk_C 181 ELTCPITCKPYE---APLISRKCNHVFDRDGIQNYL 213 (267)
T ss_dssp CSBCTTTSSBCS---SEEEESSSCCEEEHHHHHHHS
T ss_pred eeECcCccCccc---CCeeeCCCCCcccHHHHHHHH
Confidence 378888888885 44554 568888888766544
No 192
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=25.35 E-value=24 Score=20.46 Aligned_cols=24 Identities=29% Similarity=0.616 Sum_probs=12.6
Q ss_pred ccccccccccccCCCeeEEeCCccccccc
Q psy7479 45 LKCGCCDCRLGEVGSTLYQKANLILCKRD 73 (170)
Q Consensus 45 f~C~~C~~~l~~~~~~~~~~~~~~yC~~c 73 (170)
+.|..|+.+|. +...++.++|..|
T Consensus 9 L~CP~ck~~L~-----~~~~~~~LiC~~c 32 (68)
T 2hf1_A 9 LVCPLCKGPLV-----FDKSKDELICKGD 32 (68)
T ss_dssp CBCTTTCCBCE-----EETTTTEEEETTT
T ss_pred eECCCCCCcCe-----EeCCCCEEEcCCC
Confidence 46666766663 2223455555554
No 193
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=25.24 E-value=21 Score=15.09 Aligned_cols=10 Identities=40% Similarity=1.351 Sum_probs=7.9
Q ss_pred cccccCCccc
Q psy7479 110 FACQQCNHRF 119 (170)
Q Consensus 110 f~C~~C~~~l 119 (170)
|.|..|++.+
T Consensus 4 ~~C~~C~k~f 13 (28)
T 2kvf_A 4 YSCSVCGKRF 13 (28)
T ss_dssp EECSSSCCEE
T ss_pred ccCCCCCccc
Confidence 6788888877
No 194
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=25.09 E-value=11 Score=21.00 Aligned_cols=42 Identities=24% Similarity=0.395 Sum_probs=19.8
Q ss_pred CCCCcccccccccccccceeEEeCCcccc--ccCccccccccccc
Q psy7479 13 ASGGLKECASCGKRITERFLLKALDLFWH--EDCLKCGCCDCRLG 55 (170)
Q Consensus 13 ~~~~~~~C~~C~~~I~~~~~~~~~~~~~H--~~Cf~C~~C~~~l~ 55 (170)
.....-.|..|++.......+.. -...| ..-|+|..|++.+.
T Consensus 10 ~~~k~~~C~~C~k~f~~~~~L~~-H~~~h~~~~~~~C~~C~~~f~ 53 (72)
T 1x6e_A 10 SGEKPYGCVECGKAFSRSSILVQ-HQRVHTGEKPYKCLECGKAFS 53 (72)
T ss_dssp TTCCCEECSSSCCEESSHHHHHH-HHHGGGCSCCEECSSSCCEES
T ss_pred CCCCCccCCCCCCccCCHHHHHH-HHHhcCCCCCeECCCCCcccC
Confidence 34445567777776654321111 00111 23366666766553
No 195
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=24.86 E-value=25 Score=20.34 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=12.1
Q ss_pred ccccccccccccCCCeeEEeCCccccccc
Q psy7479 45 LKCGCCDCRLGEVGSTLYQKANLILCKRD 73 (170)
Q Consensus 45 f~C~~C~~~l~~~~~~~~~~~~~~yC~~c 73 (170)
+.|..|+.+|. +....+.++|..|
T Consensus 9 L~CP~ck~~L~-----~~~~~~~LiC~~c 32 (68)
T 2jr6_A 9 LVCPVTKGRLE-----YHQDKQELWSRQA 32 (68)
T ss_dssp CBCSSSCCBCE-----EETTTTEEEETTT
T ss_pred eECCCCCCcCe-----EeCCCCEEEcCCC
Confidence 45666666653 2223355555544
No 196
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=24.74 E-value=25 Score=20.33 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=13.3
Q ss_pred ccccccccccccCCCeeEEeCCccccccc
Q psy7479 45 LKCGCCDCRLGEVGSTLYQKANLILCKRD 73 (170)
Q Consensus 45 f~C~~C~~~l~~~~~~~~~~~~~~yC~~c 73 (170)
+.|..|+.+|. +...+|.++|..|
T Consensus 11 L~CP~ck~~L~-----~~~~~g~LvC~~c 34 (67)
T 2jny_A 11 LACPKDKGPLR-----YLESEQLLVNERL 34 (67)
T ss_dssp CBCTTTCCBCE-----EETTTTEEEETTT
T ss_pred hCCCCCCCcCe-----EeCCCCEEEcCCC
Confidence 46666766663 2233456666555
No 197
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=24.67 E-value=20 Score=15.21 Aligned_cols=10 Identities=20% Similarity=0.780 Sum_probs=7.8
Q ss_pred cccccCCccc
Q psy7479 110 FACQQCNHRF 119 (170)
Q Consensus 110 f~C~~C~~~l 119 (170)
|.|..|++.+
T Consensus 4 ~~C~~C~k~f 13 (27)
T 2kvg_A 4 YRCPLCRAGC 13 (27)
T ss_dssp EEETTTTEEE
T ss_pred cCCCCCCccc
Confidence 6788888876
No 198
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=24.66 E-value=21 Score=15.02 Aligned_cols=10 Identities=30% Similarity=1.242 Sum_probs=7.4
Q ss_pred cccccCCccc
Q psy7479 110 FACQQCNHRF 119 (170)
Q Consensus 110 f~C~~C~~~l 119 (170)
|.|..|++.+
T Consensus 3 ~~C~~C~k~f 12 (29)
T 2m0f_A 3 LKCRECGKQF 12 (29)
T ss_dssp EECTTTSCEE
T ss_pred ccCCCCCCcc
Confidence 5677887776
No 199
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=24.37 E-value=20 Score=19.96 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=18.0
Q ss_pred eCCcc-ccccceeccccccccccccccccc
Q psy7479 64 KANLI-LCKRDYLRLFGTTGYCAACTKVIP 92 (170)
Q Consensus 64 ~~~~~-yC~~c~~~~~~~~~~C~~C~~~i~ 92 (170)
.=|.. +|..|..+.....+.|..|..+|.
T Consensus 26 pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 26 RTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp TEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 33444 677776654322237999999884
No 200
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=24.27 E-value=23 Score=20.63 Aligned_cols=10 Identities=50% Similarity=1.029 Sum_probs=5.6
Q ss_pred cccccccccc
Q psy7479 45 LKCGCCDCRL 54 (170)
Q Consensus 45 f~C~~C~~~l 54 (170)
+.|..|+.+|
T Consensus 9 L~CP~ck~~L 18 (70)
T 2js4_A 9 LVCPVCKGRL 18 (70)
T ss_dssp CBCTTTCCBE
T ss_pred eECCCCCCcC
Confidence 4555565555
No 201
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=24.08 E-value=24 Score=14.74 Aligned_cols=10 Identities=30% Similarity=1.198 Sum_probs=7.5
Q ss_pred cccccCCccc
Q psy7479 110 FACQQCNHRF 119 (170)
Q Consensus 110 f~C~~C~~~l 119 (170)
|.|..|++.+
T Consensus 3 ~~C~~C~~~f 12 (29)
T 2m0e_A 3 HKCPHCDKKF 12 (29)
T ss_dssp CCCSSCCCCC
T ss_pred CcCCCCCccc
Confidence 5678888776
No 202
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=23.97 E-value=23 Score=15.00 Aligned_cols=10 Identities=60% Similarity=1.507 Sum_probs=7.7
Q ss_pred cccccCCccc
Q psy7479 110 FACQQCNHRF 119 (170)
Q Consensus 110 f~C~~C~~~l 119 (170)
|.|..|++.+
T Consensus 3 ~~C~~C~k~f 12 (29)
T 1rik_A 3 FACPECPKRF 12 (29)
T ss_dssp EECSSSSCEE
T ss_pred ccCCCCCchh
Confidence 5788888877
No 203
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=23.61 E-value=23 Score=15.03 Aligned_cols=10 Identities=30% Similarity=1.162 Sum_probs=7.7
Q ss_pred cccccCCccc
Q psy7479 110 FACQQCNHRF 119 (170)
Q Consensus 110 f~C~~C~~~l 119 (170)
|.|..|++.+
T Consensus 4 ~~C~~C~~~f 13 (30)
T 2m0d_A 4 YQCDYCGRSF 13 (30)
T ss_dssp EECTTTCCEE
T ss_pred ccCCCCCccc
Confidence 5688888876
No 204
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=23.15 E-value=27 Score=14.76 Aligned_cols=10 Identities=40% Similarity=1.052 Sum_probs=7.8
Q ss_pred cccccCCccc
Q psy7479 110 FACQQCNHRF 119 (170)
Q Consensus 110 f~C~~C~~~l 119 (170)
|.|..|++.+
T Consensus 3 ~~C~~C~k~f 12 (30)
T 1klr_A 3 YQCQYCEFRS 12 (30)
T ss_dssp CCCSSSSCCC
T ss_pred ccCCCCCCcc
Confidence 5788888877
No 205
>2lbz_A Thuricin17, thurincin H; helical loops, crosslinked, antimicrobial protein; HET: DSG 2TL DSN; NMR {Bacillus thuringiensis}
Probab=22.74 E-value=28 Score=16.17 Aligned_cols=12 Identities=42% Similarity=1.198 Sum_probs=8.7
Q ss_pred cCcccccccccc
Q psy7479 43 DCLKCGCCDCRL 54 (170)
Q Consensus 43 ~Cf~C~~C~~~l 54 (170)
.|+.|..|...|
T Consensus 6 sclvcaacsvel 17 (31)
T 2lbz_A 6 SCLVCAACSVEL 17 (31)
T ss_dssp GGGGGGGCCSCS
T ss_pred HHHHHHHhHHHH
Confidence 577788887665
No 206
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.59 E-value=73 Score=18.46 Aligned_cols=9 Identities=22% Similarity=0.634 Sum_probs=3.9
Q ss_pred ccccccccc
Q psy7479 83 YCAACTKVI 91 (170)
Q Consensus 83 ~C~~C~~~i 91 (170)
.|..|...+
T Consensus 66 ~CP~CR~~~ 74 (81)
T 2ecl_A 66 RCPLCQQDW 74 (81)
T ss_dssp BCTTTCCBC
T ss_pred CCCCcCCCc
Confidence 444444433
No 207
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=22.36 E-value=23 Score=19.81 Aligned_cols=28 Identities=18% Similarity=0.314 Sum_probs=16.8
Q ss_pred CCcc-ccccceeccccccccccccccccc
Q psy7479 65 ANLI-LCKRDYLRLFGTTGYCAACTKVIP 92 (170)
Q Consensus 65 ~~~~-yC~~c~~~~~~~~~~C~~C~~~i~ 92 (170)
=|.. +|..|..+.......|..|..+|.
T Consensus 28 CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 28 TGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp EEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 3444 566666554322237999998884
No 208
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=26.95 E-value=20 Score=15.35 Aligned_cols=11 Identities=27% Similarity=1.144 Sum_probs=8.6
Q ss_pred cccccCCcccc
Q psy7479 110 FACQQCNHRFC 120 (170)
Q Consensus 110 f~C~~C~~~l~ 120 (170)
|.|..|++.+.
T Consensus 4 ~~C~~C~k~f~ 14 (30)
T 2lvr_A 4 YVCIHCQRQFA 14 (30)
Confidence 67888888873
No 209
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=20.92 E-value=28 Score=15.61 Aligned_cols=11 Identities=27% Similarity=0.960 Sum_probs=8.8
Q ss_pred ccccccCCccc
Q psy7479 109 CFACQQCNHRF 119 (170)
Q Consensus 109 Cf~C~~C~~~l 119 (170)
-|.|..|++.+
T Consensus 7 ~~~C~~C~k~f 17 (35)
T 2elx_A 7 GYVCALCLKKF 17 (35)
T ss_dssp SEECSSSCCEE
T ss_pred CeECCCCcchh
Confidence 37788998887
No 210
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=20.90 E-value=32 Score=15.74 Aligned_cols=11 Identities=36% Similarity=1.120 Sum_probs=9.0
Q ss_pred ccccccCCccc
Q psy7479 109 CFACQQCNHRF 119 (170)
Q Consensus 109 Cf~C~~C~~~l 119 (170)
-|.|..|++.+
T Consensus 11 ~~~C~~C~k~f 21 (37)
T 1p7a_A 11 PFQCPDCDRSF 21 (37)
T ss_dssp SBCCTTTCCCB
T ss_pred CccCCCCCccc
Confidence 47899999887
No 211
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.83 E-value=69 Score=17.27 Aligned_cols=30 Identities=37% Similarity=0.656 Sum_probs=17.3
Q ss_pred CCCcccccccccccccceeEEe--CCccccccCcc
Q psy7479 14 SGGLKECASCGKRITERFLLKA--LDLFWHEDCLK 46 (170)
Q Consensus 14 ~~~~~~C~~C~~~I~~~~~~~~--~~~~~H~~Cf~ 46 (170)
......|..|++. +. ++.- -.+.||..|+.
T Consensus 6 ~~~~~~C~vC~~~--g~-ll~Cd~C~~~~H~~Cl~ 37 (56)
T 2yql_A 6 SGHEDFCSVCRKS--GQ-LLMCDTCSRVYHLDCLD 37 (56)
T ss_dssp CSSCCSCSSSCCS--SC-CEECSSSSCEECSSSSS
T ss_pred CCCCCCCccCCCC--Ce-EEEcCCCCcceECccCC
Confidence 3445678888874 22 3322 34668877754
No 212
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=20.63 E-value=29 Score=15.67 Aligned_cols=10 Identities=40% Similarity=1.095 Sum_probs=8.4
Q ss_pred cccccCCccc
Q psy7479 110 FACQQCNHRF 119 (170)
Q Consensus 110 f~C~~C~~~l 119 (170)
|.|..|++.+
T Consensus 8 ~~C~~C~k~f 17 (35)
T 1srk_A 8 FVCRICLSAF 17 (35)
T ss_dssp EECSSSCCEE
T ss_pred eeCCCCCccc
Confidence 6788898887
No 213
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=20.51 E-value=28 Score=15.57 Aligned_cols=10 Identities=60% Similarity=1.444 Sum_probs=7.2
Q ss_pred cccccCCccc
Q psy7479 110 FACQQCNHRF 119 (170)
Q Consensus 110 f~C~~C~~~l 119 (170)
|.|..|++.+
T Consensus 3 ~~C~~C~k~f 12 (32)
T 2kfq_A 3 FACPACPKRF 12 (32)
T ss_dssp SSSSSSCTTH
T ss_pred CCCCCCCccc
Confidence 5677787765
No 214
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.45 E-value=34 Score=15.48 Aligned_cols=11 Identities=27% Similarity=0.963 Sum_probs=8.9
Q ss_pred ccccccCCccc
Q psy7479 109 CFACQQCNHRF 119 (170)
Q Consensus 109 Cf~C~~C~~~l 119 (170)
-|.|..|++.+
T Consensus 9 ~~~C~~C~k~f 19 (36)
T 2elr_A 9 THLCDMCGKKF 19 (36)
T ss_dssp SCBCTTTCCBC
T ss_pred CeecCcCCCCc
Confidence 37788999887
No 215
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=20.42 E-value=15 Score=22.31 Aligned_cols=62 Identities=15% Similarity=0.241 Sum_probs=31.0
Q ss_pred ccccccccccC-CceEEe--cCCcccccCccccccCCcccccCCeEEEeCCeeccHHhHHHHhhhccccCC
Q psy7479 83 YCAACTKVIPA-FEMVMR--AKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFANIAYN 150 (170)
Q Consensus 83 ~C~~C~~~i~~-~~~~~~--~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~~~~~ 150 (170)
.|..|+..-.. .+.++. .-+..||..|.. -+| ......+-++.-+|..|..+......+...
T Consensus 18 ~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~-----Ppl-~~~~~~~p~g~W~C~~C~~~~~~~~~~~~~ 82 (88)
T 1wev_A 18 ACVVCRQMTVASGNQLVECQECHNLYHQDCHK-----PQV-TDKEVNDPRLVWYCARCTRQMKRMAQKNQK 82 (88)
T ss_dssp SCSSSCCCCCCTTCCEEECSSSCCEEETTTSS-----SCC-CHHHHHCTTCCCCCHHHHHHHCCSTTCCCC
T ss_pred cCCCCCCCCCCCCCceEECCCCCCeEcCccCC-----Ccc-cccccCCCCCCeeCccccchhhhhccccCC
Confidence 57777654321 112222 234678888754 223 100011235677899998766444444433
No 216
>3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 4fip_D 4fjc_D 4fk5_E 3m99_D
Probab=20.32 E-value=19 Score=22.37 Aligned_cols=18 Identities=22% Similarity=0.479 Sum_probs=13.5
Q ss_pred CCCcccccccccccccce
Q psy7479 14 SGGLKECASCGKRITERF 31 (170)
Q Consensus 14 ~~~~~~C~~C~~~I~~~~ 31 (170)
.....+|..|++||.-..
T Consensus 72 ~~~YRvCn~CGkPI~l~A 89 (96)
T 3mhs_E 72 PIQYRVCEKCGKPLALTA 89 (96)
T ss_dssp SCCCEEETTTCCEECGGG
T ss_pred cccchhhhccCCceeHHH
Confidence 356788999999987653
No 217
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.24 E-value=73 Score=18.37 Aligned_cols=15 Identities=13% Similarity=0.574 Sum_probs=10.7
Q ss_pred CCCcccccccccccc
Q psy7479 14 SGGLKECASCGKRIT 28 (170)
Q Consensus 14 ~~~~~~C~~C~~~I~ 28 (170)
......|..|++.+.
T Consensus 12 ~~~~~rC~~C~kk~g 26 (67)
T 1x4w_A 12 QKSRRRCFQCQTKLE 26 (67)
T ss_dssp CSCTTBCSSSCCBCC
T ss_pred CccCCcchhhCCeec
Confidence 445578999988764
No 218
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=20.16 E-value=39 Score=26.67 Aligned_cols=46 Identities=13% Similarity=0.211 Sum_probs=31.0
Q ss_pred ccccccccccccCCCeeEEeCCccccccceecccc-cccccccccccccC
Q psy7479 45 LKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG-TTGYCAACTKVIPA 93 (170)
Q Consensus 45 f~C~~C~~~l~~~~~~~~~~~~~~yC~~c~~~~~~-~~~~C~~C~~~i~~ 93 (170)
..|..|-..+. ......=|..+|..|...... ....|..|..+|..
T Consensus 333 ~~C~ICle~~~---~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 333 QLCKICAENDK---DVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SBCTTTSSSBC---CEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCccCcCCC---CeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 46777766654 345667788889998765432 12389999988854
No 219
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=25.53 E-value=22 Score=15.17 Aligned_cols=11 Identities=27% Similarity=0.800 Sum_probs=8.3
Q ss_pred cccccCCcccc
Q psy7479 110 FACQQCNHRFC 120 (170)
Q Consensus 110 f~C~~C~~~l~ 120 (170)
|.|..|++.+.
T Consensus 3 ~~C~~C~k~f~ 13 (29)
T 2lvt_A 3 CQCVMCGKAFT 13 (29)
Confidence 57888888873
No 220
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=20.05 E-value=26 Score=20.31 Aligned_cols=11 Identities=36% Similarity=0.739 Sum_probs=6.4
Q ss_pred ccccccccccc
Q psy7479 45 LKCGCCDCRLG 55 (170)
Q Consensus 45 f~C~~C~~~l~ 55 (170)
+.|..|+.+|.
T Consensus 9 L~CP~ck~~L~ 19 (69)
T 2pk7_A 9 LACPICKGPLK 19 (69)
T ss_dssp CCCTTTCCCCE
T ss_pred eeCCCCCCcCe
Confidence 45666666653
No 221
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=20.05 E-value=33 Score=19.81 Aligned_cols=32 Identities=19% Similarity=0.396 Sum_probs=18.6
Q ss_pred CCCcccccccccccccceeEEeC--CccccccCc
Q psy7479 14 SGGLKECASCGKRITERFLLKAL--DLFWHEDCL 45 (170)
Q Consensus 14 ~~~~~~C~~C~~~I~~~~~~~~~--~~~~H~~Cf 45 (170)
......|..|+++-.+..+|.-. +..||..|.
T Consensus 15 ~~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv 48 (75)
T 2k16_A 15 GNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCV 48 (75)
T ss_dssp SCEEECBTTTTBCCSSCCEEECSSSSSEEEHHHH
T ss_pred CCCCcCCCCCCCCCCCCCEEEcCCCCcccccccC
Confidence 34455698998876554334332 345676664
Done!