BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7480
(204 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|158289946|ref|XP_311556.4| AGAP010391-PA [Anopheles gambiae str. PEST]
gi|157018403|gb|EAA07238.4| AGAP010391-PA [Anopheles gambiae str. PEST]
Length = 204
Score = 298 bits (764), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 145/169 (85%), Positives = 153/169 (90%), Gaps = 1/169 (0%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
TT SSV+ A A+G K+CA CGKRITERFLLKALD+FWHEDCLKCGCCDCRLGEV
Sbjct: 31 TTIQSSVSATANQVAATGLAKDCAGCGKRITERFLLKALDIFWHEDCLKCGCCDCRLGEV 90
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
GSTLY KANLILCKRDYLRLFGTTGYCAAC KVIPAFEMVMRAKNNVYHLECFACQQCNH
Sbjct: 91 GSTLYTKANLILCKRDYLRLFGTTGYCAACNKVIPAFEMVMRAKNNVYHLECFACQQCNH 150
Query: 152 RFCVGDRFYLCDNKILCEYDYEERQVFANIAYNPSSLAHLRRQVT-LQV 199
RFCVGDRFYLCDNKILCEYDYEER VFA++A NPSSLAH+RRQV+ LQV
Sbjct: 151 RFCVGDRFYLCDNKILCEYDYEERLVFASMACNPSSLAHIRRQVSNLQV 199
>gi|270005132|gb|EFA01580.1| hypothetical protein TcasGA2_TC007141 [Tribolium castaneum]
Length = 254
Score = 298 bits (764), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 141/171 (82%), Positives = 150/171 (87%), Gaps = 7/171 (4%)
Query: 24 ATHYQVDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGC 83
T V ++T A+S GA G++ECA CGKRITERFLLKALDL+WHEDCLKCGC
Sbjct: 25 PTPVPVSVSTAANSTATGA-------GVRECAGCGKRITERFLLKALDLYWHEDCLKCGC 77
Query: 84 CDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLEC 143
CDCRLGEVGSTLY KANLILCKRDYLRLFGTTGYCAAC KVIPAFEMVMRAK+NVYHLEC
Sbjct: 78 CDCRLGEVGSTLYTKANLILCKRDYLRLFGTTGYCAACNKVIPAFEMVMRAKSNVYHLEC 137
Query: 144 FACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFANIAYNPSSLAHLRRQ 194
FACQQCNHRFCVGDRFYLCDNKILCEYDYEER VFAN+ YNPSSLAH+RRQ
Sbjct: 138 FACQQCNHRFCVGDRFYLCDNKILCEYDYEERLVFANMTYNPSSLAHIRRQ 188
>gi|157116702|ref|XP_001652842.1| rhombotin [Aedes aegypti]
gi|108876328|gb|EAT40553.1| AAEL007719-PA [Aedes aegypti]
Length = 218
Score = 297 bits (760), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 143/165 (86%), Positives = 151/165 (91%), Gaps = 1/165 (0%)
Query: 36 SSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTL 95
SSV+ G++G K+CA CGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTL
Sbjct: 49 SSVSSTPNLIGSNGMAKDCAGCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTL 108
Query: 96 YQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCV 155
Y KANLILCKRDYLRLFGTTGYCAAC KVIPAFEMVMRAKNNVYHLECFACQQCNHRFCV
Sbjct: 109 YTKANLILCKRDYLRLFGTTGYCAACNKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCV 168
Query: 156 GDRFYLCDNKILCEYDYEERQVFANIAYNPSSLAHLRRQVT-LQV 199
GDRFYLCDNKILCEYDYEER VFA++A NPSSLAH+RRQV+ LQV
Sbjct: 169 GDRFYLCDNKILCEYDYEERLVFASMACNPSSLAHIRRQVSNLQV 213
>gi|242005244|ref|XP_002423481.1| LIM-only protein, putative [Pediculus humanus corporis]
gi|212506569|gb|EEB10743.1| LIM-only protein, putative [Pediculus humanus corporis]
Length = 284
Score = 296 bits (758), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 137/149 (91%), Positives = 142/149 (95%)
Query: 47 ASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKR 106
S G +ECA CGKRITERFLLKA+DLFWHEDCLKCGCCDCRLGEVGSTLY KANLILCKR
Sbjct: 42 PSSGPRECAGCGKRITERFLLKAIDLFWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKR 101
Query: 107 DYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKI 166
DYLRLFGTTGYCAAC KVIPAFEMVMRAK+NVYHLECFACQQCNHRFCVGDRFYLCDNKI
Sbjct: 102 DYLRLFGTTGYCAACNKVIPAFEMVMRAKSNVYHLECFACQQCNHRFCVGDRFYLCDNKI 161
Query: 167 LCEYDYEERQVFANIAYNPSSLAHLRRQV 195
LCEYDYEER VFAN+AYNPSSLAH+RRQV
Sbjct: 162 LCEYDYEERLVFANMAYNPSSLAHIRRQV 190
>gi|189236731|ref|XP_974987.2| PREDICTED: similar to AGAP010391-PA [Tribolium castaneum]
Length = 231
Score = 291 bits (745), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 135/148 (91%), Positives = 142/148 (95%)
Query: 49 GGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDY 108
G ++ECA CGKRITERFLLKALDL+WHEDCLKCGCCDCRLGEVGSTLY KANLILCKRDY
Sbjct: 15 GRVRECAGCGKRITERFLLKALDLYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 74
Query: 109 LRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILC 168
LRLFGTTGYCAAC KVIPAFEMVMRAK+NVYHLECFACQQCNHRFCVGDRFYLCDNKILC
Sbjct: 75 LRLFGTTGYCAACNKVIPAFEMVMRAKSNVYHLECFACQQCNHRFCVGDRFYLCDNKILC 134
Query: 169 EYDYEERQVFANIAYNPSSLAHLRRQVT 196
EYDYEER VFAN+ YNPSSLAH+RRQV+
Sbjct: 135 EYDYEERLVFANMTYNPSSLAHIRRQVS 162
>gi|170031972|ref|XP_001843857.1| rhombotin [Culex quinquefasciatus]
gi|167871437|gb|EDS34820.1| rhombotin [Culex quinquefasciatus]
Length = 255
Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 143/169 (84%), Positives = 148/169 (87%), Gaps = 3/169 (1%)
Query: 36 SSVTQGALAGGASGGL--KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGS 93
SS+ G S GL K+CA CGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGS
Sbjct: 62 SSIQSAPNLGLGSTGLANKDCAGCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGS 121
Query: 94 TLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRF 153
TLY KANLILCKRDYLRLFGTTGYCAAC KVIPAFEMVMRAKNNVYHLECFACQQCNHRF
Sbjct: 122 TLYTKANLILCKRDYLRLFGTTGYCAACNKVIPAFEMVMRAKNNVYHLECFACQQCNHRF 181
Query: 154 CVGDRFYLCDNKILCEYDYEERQVFANIAYNPSSLAHLRRQVTLQV-LW 201
CVGDRFYLCDNKILCEYDYEER VFA++A NPSSLAH+RRQ V LW
Sbjct: 182 CVGDRFYLCDNKILCEYDYEERLVFASMACNPSSLAHIRRQRKYIVELW 230
>gi|328712778|ref|XP_001945042.2| PREDICTED: hypothetical protein LOC100161710 [Acyrthosiphon pisum]
Length = 388
Score = 289 bits (739), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 141/177 (79%), Positives = 154/177 (87%), Gaps = 6/177 (3%)
Query: 26 HYQVD--LTTDASSVTQGALAG--GASGGL-KECASCGKRITERFLLKALDLFWHEDCLK 80
H Q + + T+ +VT L G G++ + +ECA+CGKRITERFLLKALDLFWHEDCLK
Sbjct: 26 HQQTNGGVVTNGGTVTATTLTGLNGSTAMIARECANCGKRITERFLLKALDLFWHEDCLK 85
Query: 81 CGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYH 140
CGCCDCRLGEVGSTLY KANLILCKRDYLRLFG TG CAAC KVIPAFEMVMRAKNNVYH
Sbjct: 86 CGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGATGNCAACNKVIPAFEMVMRAKNNVYH 145
Query: 141 LECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFANIA-YNPSSLAHLRRQVT 196
LECFACQQCNHRFCVGDRFYLC+NKILCEYDYEER VFAN+A YN SSLAH+RRQV+
Sbjct: 146 LECFACQQCNHRFCVGDRFYLCENKILCEYDYEERLVFANMATYNSSSLAHIRRQVS 202
>gi|91080717|ref|XP_975367.1| PREDICTED: similar to beadex/dLMO protein [Tribolium castaneum]
gi|270005467|gb|EFA01915.1| hypothetical protein TcasGA2_TC007525 [Tribolium castaneum]
Length = 241
Score = 285 bits (728), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 132/166 (79%), Positives = 147/166 (88%), Gaps = 1/166 (0%)
Query: 38 VTQGALAGGASG-GLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLY 96
V++G A +SG G +ECA C K ITER+LLKALDL+WHEDCLKCGCCDCRLGEVGSTLY
Sbjct: 19 VSKGEAAKPSSGQGPQECAGCCKTITERYLLKALDLYWHEDCLKCGCCDCRLGEVGSTLY 78
Query: 97 QKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVG 156
KANLILCKRDYLRLFG TGYCAAC+KVIPAFEMVMRA++NVYHLECFACQQCNHRFCVG
Sbjct: 79 TKANLILCKRDYLRLFGNTGYCAACSKVIPAFEMVMRARSNVYHLECFACQQCNHRFCVG 138
Query: 157 DRFYLCDNKILCEYDYEERQVFANIAYNPSSLAHLRRQVTLQVLWI 202
DRFYLC+NKILCEYDYEER VFAN+AYNP L+HL+RQ ++ I
Sbjct: 139 DRFYLCENKILCEYDYEERLVFANMAYNPPPLSHLKRQTSIPPPNI 184
>gi|357622819|gb|EHJ74198.1| beadex/dLMO protein [Danaus plexippus]
Length = 359
Score = 280 bits (715), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 129/178 (72%), Positives = 144/178 (80%), Gaps = 1/178 (0%)
Query: 20 SLRLATHYQVDLTTDASSVTQGALAGGASGGLKE-CASCGKRITERFLLKALDLFWHEDC 78
S +L +D+T +A + + G + + CA C K ITER+LLKALD WHEDC
Sbjct: 132 SSQLGHMLAMDVTKEARASPLPSTTGAPAQPQPQICAGCSKVITERYLLKALDQLWHEDC 191
Query: 79 LKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNV 138
LKCGCCDCRLGEVG TLY +ANLILCKRDYLRLFG TGYCAAC KVIPAFEMVMRA++NV
Sbjct: 192 LKCGCCDCRLGEVGHTLYTRANLILCKRDYLRLFGNTGYCAACNKVIPAFEMVMRARSNV 251
Query: 139 YHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFANIAYNPSSLAHLRRQVT 196
YHLECFACQQCNHRFCVGDRFYLC+NKILCEYDYEER VFAN+AYNP LAHL+RQ T
Sbjct: 252 YHLECFACQQCNHRFCVGDRFYLCENKILCEYDYEERLVFANMAYNPPPLAHLKRQTT 309
>gi|114052529|ref|NP_001040254.1| beadex/dLMO protein [Bombyx mori]
gi|87248525|gb|ABD36315.1| beadex/dLMO protein [Bombyx mori]
Length = 267
Score = 274 bits (700), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 129/179 (72%), Positives = 143/179 (79%), Gaps = 4/179 (2%)
Query: 18 FDSLRLATHYQVDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHED 77
D + A + T+ A++VT + + CA C K ITER+LLKALD WHED
Sbjct: 24 MDVTKEARSSPLPATSQATTVT----SAQNPPQPQICAGCSKVITERYLLKALDQLWHED 79
Query: 78 CLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNN 137
CLKCGCCDCRLGEVG TLY +ANLILCKRDYLRLFG TGYCAAC KVIPAFEMVMRA++N
Sbjct: 80 CLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRLFGNTGYCAACNKVIPAFEMVMRARSN 139
Query: 138 VYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFANIAYNPSSLAHLRRQVT 196
VYHLECFACQQCNHRFCVGDRFYLC+NKILCEYDYEER VFAN+AYNP LAHL+RQ T
Sbjct: 140 VYHLECFACQQCNHRFCVGDRFYLCENKILCEYDYEERLVFANMAYNPPPLAHLKRQTT 198
>gi|242020909|ref|XP_002430893.1| LIM-only protein, putative [Pediculus humanus corporis]
gi|212516104|gb|EEB18155.1| LIM-only protein, putative [Pediculus humanus corporis]
Length = 224
Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 133/176 (75%), Positives = 145/176 (82%), Gaps = 3/176 (1%)
Query: 31 LTTDASSVTQ--GALAGG-ASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCR 87
+T D S Q GA GG AS CA CGK+IT+RF LKA +LFWHEDCLKCGCCDCR
Sbjct: 1 MTLDIKSEGQKNGAANGGTASANDCACAGCGKKITDRFFLKACELFWHEDCLKCGCCDCR 60
Query: 88 LGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQ 147
LGEVGSTLY KANLILCKRDYLRLFG TGYC+AC KVIPAFEMVMRAK+NVYHLECFACQ
Sbjct: 61 LGEVGSTLYTKANLILCKRDYLRLFGNTGYCSACNKVIPAFEMVMRAKHNVYHLECFACQ 120
Query: 148 QCNHRFCVGDRFYLCDNKILCEYDYEERQVFANIAYNPSSLAHLRRQVTLQVLWIR 203
QCNHRFCVGDRFYLC+NKILCEYDYEER VFAN+AYNP S+A ++R + V R
Sbjct: 121 QCNHRFCVGDRFYLCENKILCEYDYEERLVFANMAYNPPSIAAIKRHLPPPVRAPR 176
>gi|193634208|ref|XP_001949623.1| PREDICTED: LIM domain only protein 3-like [Acyrthosiphon pisum]
Length = 250
Score = 266 bits (681), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 124/164 (75%), Positives = 140/164 (85%), Gaps = 2/164 (1%)
Query: 35 ASSVTQGALAGGASG--GLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVG 92
AS+ T+ + GAS G +ECA CGK IT+RFLLKALDLFWHEDCL CGCC CRLGEVG
Sbjct: 12 ASTATKSSANVGASASTGGQECAGCGKHITDRFLLKALDLFWHEDCLMCGCCGCRLGEVG 71
Query: 93 STLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHR 152
STLY KAN+ILCK+DY R+FG G CAAC K IPAFEMVMRA++NVYHLECFACQQCNHR
Sbjct: 72 STLYTKANMILCKKDYFRMFGNKGMCAACFKDIPAFEMVMRARSNVYHLECFACQQCNHR 131
Query: 153 FCVGDRFYLCDNKILCEYDYEERQVFANIAYNPSSLAHLRRQVT 196
FCVGDRFYLC+NKILCEYD+EER VFAN+AYNP++LA L+R T
Sbjct: 132 FCVGDRFYLCENKILCEYDFEERMVFANMAYNPATLAQLKRHAT 175
>gi|307206046|gb|EFN84139.1| Rhombotin-1 [Harpegnathos saltator]
Length = 249
Score = 259 bits (662), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 119/146 (81%), Positives = 131/146 (89%), Gaps = 1/146 (0%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
+ECA CGK ITER+LLKALDL+WHEDCLKCGCCDCRLGEVGSTLY KANLILCKRDYLRL
Sbjct: 18 QECAGCGKTITERYLLKALDLYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRL 77
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
FG TG CAAC K IPAFEMVMRA+ NVYHL+CFACQQC HRFCVGDRFYLC+NKILCEYD
Sbjct: 78 FGNTGCCAACNKPIPAFEMVMRARTNVYHLDCFACQQCTHRFCVGDRFYLCENKILCEYD 137
Query: 172 YEERQVFANIAYN-PSSLAHLRRQVT 196
YEER FAN+A P+SLA+++RQ+
Sbjct: 138 YEERLAFANMALQTPASLAYIKRQLP 163
>gi|383853636|ref|XP_003702328.1| PREDICTED: LIM domain only protein 3-like [Megachile rotundata]
Length = 249
Score = 256 bits (653), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 116/146 (79%), Positives = 131/146 (89%), Gaps = 1/146 (0%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
+ECA CGK ITER+LLKALDL+WHEDCLKCGCC+CRLGEVGSTLY KANLILCKRDYLRL
Sbjct: 18 QECAGCGKTITERYLLKALDLYWHEDCLKCGCCECRLGEVGSTLYTKANLILCKRDYLRL 77
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
FG TG CAAC K IPAFEMVM+A+ NVYHL+CFACQQC HRFCVGDRFYLC+NKILCEYD
Sbjct: 78 FGNTGNCAACNKHIPAFEMVMKARTNVYHLDCFACQQCTHRFCVGDRFYLCENKILCEYD 137
Query: 172 YEERQVFANIAYN-PSSLAHLRRQVT 196
YEER FAN++ P+SLA+++RQ+
Sbjct: 138 YEERLAFANMSLQTPASLAYIKRQLP 163
>gi|345487674|ref|XP_001605275.2| PREDICTED: LIM/homeobox protein Lhx3-like isoform 1 [Nasonia
vitripennis]
gi|345487676|ref|XP_003425736.1| PREDICTED: LIM/homeobox protein Lhx3-like isoform 2 [Nasonia
vitripennis]
Length = 281
Score = 254 bits (648), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 116/146 (79%), Positives = 129/146 (88%), Gaps = 1/146 (0%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
+EC C K I ER+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRL
Sbjct: 18 QECRGCSKTIKERYLLKALDAYWHEDCLKCNCCDCRLGEVGSTLYTKANLILCRRDYLRL 77
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
FG TG+C+AC K IPAFEMVMRAK NVYHLECFACQQC HRFCVGDRFYLC+NKILCEYD
Sbjct: 78 FGNTGHCSACNKPIPAFEMVMRAKTNVYHLECFACQQCYHRFCVGDRFYLCENKILCEYD 137
Query: 172 YEERQVFANIA-YNPSSLAHLRRQVT 196
YEER VFAN+A + P++LAHL+RQ+
Sbjct: 138 YEERLVFANMALHPPTNLAHLKRQLP 163
>gi|347964385|ref|XP_311266.4| AGAP000731-PA [Anopheles gambiae str. PEST]
gi|333467506|gb|EAA06846.4| AGAP000731-PA [Anopheles gambiae str. PEST]
Length = 420
Score = 253 bits (646), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 115/143 (80%), Positives = 128/143 (89%), Gaps = 4/143 (2%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA CGK I +RFLL+ALDL WHEDCLKCGCCDCRLGEVGSTLY K NL+LCKRDYLRLFG
Sbjct: 149 CAGCGKHIQDRFLLRALDLLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYLRLFG 208
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
TG+CAAC KVIPAFEMVMRA+NNVYHLECFACQQCNHRFCVGD+FYLC+NKILCEYDYE
Sbjct: 209 NTGFCAACNKVIPAFEMVMRARNNVYHLECFACQQCNHRFCVGDKFYLCENKILCEYDYE 268
Query: 174 ERQVFANIAYNPSSLAHLRRQVT 196
ER VFA++A +P L+RQ++
Sbjct: 269 ERLVFASMANHPM----LKRQIS 287
>gi|198467349|ref|XP_002134510.1| GA22333 [Drosophila pseudoobscura pseudoobscura]
gi|198149202|gb|EDY73137.1| GA22333 [Drosophila pseudoobscura pseudoobscura]
Length = 407
Score = 251 bits (641), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 115/147 (78%), Positives = 129/147 (87%), Gaps = 4/147 (2%)
Query: 50 GLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYL 109
G + CA CGK I +R+LL+ALD+ WHEDCLKCGCCDCRLGEVGSTLY K NL+LCKRDYL
Sbjct: 182 GSQLCAGCGKHIQDRYLLRALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYL 241
Query: 110 RLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCE 169
RLFG TGYCAAC+KVIPAFEMVMRA+ NVYHLECFACQQCNHRFCVGDRFYLC+NKILCE
Sbjct: 242 RLFGNTGYCAACSKVIPAFEMVMRARTNVYHLECFACQQCNHRFCVGDRFYLCENKILCE 301
Query: 170 YDYEERQVFANIAYNPSSLAHLRRQVT 196
YDYEER VFA++A +P L+R V+
Sbjct: 302 YDYEERLVFASMANHPM----LKRHVS 324
>gi|195039941|ref|XP_001990976.1| GH12432 [Drosophila grimshawi]
gi|193900734|gb|EDV99600.1| GH12432 [Drosophila grimshawi]
Length = 447
Score = 251 bits (640), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 115/147 (78%), Positives = 129/147 (87%), Gaps = 4/147 (2%)
Query: 50 GLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYL 109
G + CA CGK I +R+LL+ALD+ WHEDCLKCGCCDCRLGEVGSTLY K NL+LCKRDYL
Sbjct: 215 GSQLCAGCGKHIQDRYLLRALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYL 274
Query: 110 RLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCE 169
RLFG TGYCAAC+KVIPAFEMVMRA+ NVYHLECFACQQCNHRFCVGDRFYLC+NKILCE
Sbjct: 275 RLFGNTGYCAACSKVIPAFEMVMRARTNVYHLECFACQQCNHRFCVGDRFYLCENKILCE 334
Query: 170 YDYEERQVFANIAYNPSSLAHLRRQVT 196
YDYEER VFA++A +P L+R V+
Sbjct: 335 YDYEERLVFASMANHPM----LKRHVS 357
>gi|340710497|ref|XP_003393824.1| PREDICTED: LIM domain only protein 3-like [Bombus terrestris]
Length = 249
Score = 250 bits (639), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 110/145 (75%), Positives = 130/145 (89%), Gaps = 1/145 (0%)
Query: 53 ECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLF 112
ECA CGK ITER+LLKA+DLFWHEDCLKCGCCDCRLGEVGS+L+ +ANLILCKRDYLRLF
Sbjct: 19 ECAGCGKAITERYLLKAMDLFWHEDCLKCGCCDCRLGEVGSSLFTRANLILCKRDYLRLF 78
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
G G+CAAC K IP FEMVM+A++NVYHL+CFACQQC HRFCVGDRFYLC+NKILCE+DY
Sbjct: 79 GNPGHCAACNKQIPPFEMVMKARSNVYHLDCFACQQCTHRFCVGDRFYLCENKILCEFDY 138
Query: 173 EERQVFANIAYN-PSSLAHLRRQVT 196
EER FAN++ P++LA+++RQ+
Sbjct: 139 EERLAFANMSVQTPATLAYIKRQLP 163
>gi|110751065|ref|XP_001120755.1| PREDICTED: LIM domain only protein 3-like [Apis mellifera]
Length = 249
Score = 250 bits (639), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 110/145 (75%), Positives = 129/145 (88%), Gaps = 1/145 (0%)
Query: 53 ECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLF 112
ECA CGK ITER+LLKA+DLFWHEDCLKCGCCDCRLGEVGS+L+ +ANLILCKRDYLRLF
Sbjct: 19 ECAGCGKPITERYLLKAMDLFWHEDCLKCGCCDCRLGEVGSSLFTRANLILCKRDYLRLF 78
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
G G+CAAC K IP FEMVM+A+ NVYHL+CFACQQC HRFCVGDRFYLC+NKILCE+DY
Sbjct: 79 GNPGHCAACNKQIPPFEMVMKARTNVYHLDCFACQQCTHRFCVGDRFYLCENKILCEFDY 138
Query: 173 EERQVFANIAYN-PSSLAHLRRQVT 196
EER FAN++ P++LA+++RQ+
Sbjct: 139 EERLAFANMSVQTPATLAYIKRQLP 163
>gi|307170933|gb|EFN63033.1| Rhombotin-1 [Camponotus floridanus]
Length = 248
Score = 249 bits (637), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 115/144 (79%), Positives = 128/144 (88%), Gaps = 1/144 (0%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C K ITER+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLILCKRDYLRLFG
Sbjct: 19 CAGCAKAITERYLLKALDSYWHEDCLKCSCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 78
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
+TG CAAC K IPAFEMVMRA+ NVYHL+CFACQQC HRFCVGDRFYLC+NKILCEYDYE
Sbjct: 79 STGCCAACNKQIPAFEMVMRARTNVYHLDCFACQQCTHRFCVGDRFYLCENKILCEYDYE 138
Query: 174 ERQVFANIAY-NPSSLAHLRRQVT 196
ER FAN+A +P+SLA+++RQ+
Sbjct: 139 ERLAFANMAIQSPASLAYIKRQLP 162
>gi|442616864|ref|NP_001259687.1| beadex, isoform D [Drosophila melanogaster]
gi|440216921|gb|AGB95529.1| beadex, isoform D [Drosophila melanogaster]
Length = 424
Score = 249 bits (637), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 115/147 (78%), Positives = 129/147 (87%), Gaps = 4/147 (2%)
Query: 50 GLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYL 109
G + CA CGK I +R+LL+ALD+ WHEDCLKCGCCDCRLGEVGSTLY K NL+LCKRDYL
Sbjct: 88 GSQLCAGCGKHIQDRYLLRALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYL 147
Query: 110 RLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCE 169
RLFG TGYCAAC+KVIPAFEMVMRA+ NVYHLECFACQQCNHRFCVGDRFYLC+NKILCE
Sbjct: 148 RLFGNTGYCAACSKVIPAFEMVMRARTNVYHLECFACQQCNHRFCVGDRFYLCENKILCE 207
Query: 170 YDYEERQVFANIAYNPSSLAHLRRQVT 196
YDYEER VFA++A +P L+R V+
Sbjct: 208 YDYEERLVFASMANHPM----LKRHVS 230
>gi|24643072|ref|NP_728184.1| beadex, isoform A [Drosophila melanogaster]
gi|28571259|ref|NP_788931.1| beadex, isoform C [Drosophila melanogaster]
gi|3445443|emb|CAA09104.1| beadex/dLMO protein [Drosophila melanogaster]
gi|7293486|gb|AAF48861.1| beadex, isoform A [Drosophila melanogaster]
gi|16768462|gb|AAL28450.1| GM05069p [Drosophila melanogaster]
gi|28381650|gb|AAO41709.1| beadex, isoform C [Drosophila melanogaster]
gi|220942446|gb|ACL83766.1| Bx-PA [synthetic construct]
gi|220952666|gb|ACL88876.1| Bx-PA [synthetic construct]
Length = 313
Score = 249 bits (637), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 115/147 (78%), Positives = 129/147 (87%), Gaps = 4/147 (2%)
Query: 50 GLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYL 109
G + CA CGK I +R+LL+ALD+ WHEDCLKCGCCDCRLGEVGSTLY K NL+LCKRDYL
Sbjct: 88 GSQLCAGCGKHIQDRYLLRALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYL 147
Query: 110 RLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCE 169
RLFG TGYCAAC+KVIPAFEMVMRA+ NVYHLECFACQQCNHRFCVGDRFYLC+NKILCE
Sbjct: 148 RLFGNTGYCAACSKVIPAFEMVMRARTNVYHLECFACQQCNHRFCVGDRFYLCENKILCE 207
Query: 170 YDYEERQVFANIAYNPSSLAHLRRQVT 196
YDYEER VFA++A +P L+R V+
Sbjct: 208 YDYEERLVFASMANHPM----LKRHVS 230
>gi|28571257|ref|NP_523402.4| beadex, isoform B [Drosophila melanogaster]
gi|22832512|gb|AAN09472.1| beadex, isoform B [Drosophila melanogaster]
gi|28557589|gb|AAO45200.1| RE72043p [Drosophila melanogaster]
gi|220949014|gb|ACL87050.1| Bx-PA [synthetic construct]
gi|220958192|gb|ACL91639.1| Bx-PA [synthetic construct]
Length = 384
Score = 249 bits (637), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 115/147 (78%), Positives = 129/147 (87%), Gaps = 4/147 (2%)
Query: 50 GLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYL 109
G + CA CGK I +R+LL+ALD+ WHEDCLKCGCCDCRLGEVGSTLY K NL+LCKRDYL
Sbjct: 159 GSQLCAGCGKHIQDRYLLRALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYL 218
Query: 110 RLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCE 169
RLFG TGYCAAC+KVIPAFEMVMRA+ NVYHLECFACQQCNHRFCVGDRFYLC+NKILCE
Sbjct: 219 RLFGNTGYCAACSKVIPAFEMVMRARTNVYHLECFACQQCNHRFCVGDRFYLCENKILCE 278
Query: 170 YDYEERQVFANIAYNPSSLAHLRRQVT 196
YDYEER VFA++A +P L+R V+
Sbjct: 279 YDYEERLVFASMANHPM----LKRHVS 301
>gi|194766824|ref|XP_001965524.1| GF22537 [Drosophila ananassae]
gi|190619515|gb|EDV35039.1| GF22537 [Drosophila ananassae]
Length = 408
Score = 249 bits (636), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 115/147 (78%), Positives = 129/147 (87%), Gaps = 4/147 (2%)
Query: 50 GLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYL 109
G + CA CGK I +R+LL+ALD+ WHEDCLKCGCCDCRLGEVGSTLY K NL+LCKRDYL
Sbjct: 179 GSQLCAGCGKHIQDRYLLRALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYL 238
Query: 110 RLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCE 169
RLFG TGYCAAC+KVIPAFEMVMRA+ NVYHLECFACQQCNHRFCVGDRFYLC+NKILCE
Sbjct: 239 RLFGNTGYCAACSKVIPAFEMVMRARTNVYHLECFACQQCNHRFCVGDRFYLCENKILCE 298
Query: 170 YDYEERQVFANIAYNPSSLAHLRRQVT 196
YDYEER VFA++A +P L+R V+
Sbjct: 299 YDYEERLVFASMANHPM----LKRHVS 321
>gi|195481388|ref|XP_002101630.1| GE17735 [Drosophila yakuba]
gi|194189154|gb|EDX02738.1| GE17735 [Drosophila yakuba]
Length = 370
Score = 249 bits (636), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 115/147 (78%), Positives = 129/147 (87%), Gaps = 4/147 (2%)
Query: 50 GLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYL 109
G + CA CGK I +R+LL+ALD+ WHEDCLKCGCCDCRLGEVGSTLY K NL+LCKRDYL
Sbjct: 145 GSQLCAGCGKHIQDRYLLRALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYL 204
Query: 110 RLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCE 169
RLFG TGYCAAC+KVIPAFEMVMRA+ NVYHLECFACQQCNHRFCVGDRFYLC+NKILCE
Sbjct: 205 RLFGNTGYCAACSKVIPAFEMVMRARTNVYHLECFACQQCNHRFCVGDRFYLCENKILCE 264
Query: 170 YDYEERQVFANIAYNPSSLAHLRRQVT 196
YDYEER VFA++A +P L+R V+
Sbjct: 265 YDYEERLVFASMANHPM----LKRHVS 287
>gi|195345489|ref|XP_002039301.1| GM22905 [Drosophila sechellia]
gi|194134527|gb|EDW56043.1| GM22905 [Drosophila sechellia]
Length = 382
Score = 249 bits (636), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 115/147 (78%), Positives = 129/147 (87%), Gaps = 4/147 (2%)
Query: 50 GLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYL 109
G + CA CGK I +R+LL+ALD+ WHEDCLKCGCCDCRLGEVGSTLY K NL+LCKRDYL
Sbjct: 157 GSQLCAGCGKHIQDRYLLRALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYL 216
Query: 110 RLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCE 169
RLFG TGYCAAC+KVIPAFEMVMRA+ NVYHLECFACQQCNHRFCVGDRFYLC+NKILCE
Sbjct: 217 RLFGNTGYCAACSKVIPAFEMVMRARTNVYHLECFACQQCNHRFCVGDRFYLCENKILCE 276
Query: 170 YDYEERQVFANIAYNPSSLAHLRRQVT 196
YDYEER VFA++A +P L+R V+
Sbjct: 277 YDYEERLVFASMANHPM----LKRHVS 299
>gi|195567549|ref|XP_002107322.1| GD17400 [Drosophila simulans]
gi|194204728|gb|EDX18304.1| GD17400 [Drosophila simulans]
Length = 371
Score = 249 bits (636), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 115/147 (78%), Positives = 129/147 (87%), Gaps = 4/147 (2%)
Query: 50 GLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYL 109
G + CA CGK I +R+LL+ALD+ WHEDCLKCGCCDCRLGEVGSTLY K NL+LCKRDYL
Sbjct: 146 GSQLCAGCGKHIQDRYLLRALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYL 205
Query: 110 RLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCE 169
RLFG TGYCAAC+KVIPAFEMVMRA+ NVYHLECFACQQCNHRFCVGDRFYLC+NKILCE
Sbjct: 206 RLFGNTGYCAACSKVIPAFEMVMRARTNVYHLECFACQQCNHRFCVGDRFYLCENKILCE 265
Query: 170 YDYEERQVFANIAYNPSSLAHLRRQVT 196
YDYEER VFA++A +P L+R V+
Sbjct: 266 YDYEERLVFASMANHPM----LKRHVS 288
>gi|170062853|ref|XP_001866850.1| beadex [Culex quinquefasciatus]
gi|167880615|gb|EDS43998.1| beadex [Culex quinquefasciatus]
Length = 278
Score = 249 bits (636), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 114/142 (80%), Positives = 126/142 (88%), Gaps = 4/142 (2%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C K I +RFLL+ALDL WHEDCLKCGCCDCRLGEVGSTLY K NL+LCKRDYLRLFG
Sbjct: 58 CAGCKKHIQDRFLLRALDLLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYLRLFG 117
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
TG+CAAC KVIPAFEMVMRA+NNVYHLECFACQQCNHRFCVGD+FYLC+NKILCEYDYE
Sbjct: 118 NTGFCAACNKVIPAFEMVMRARNNVYHLECFACQQCNHRFCVGDKFYLCENKILCEYDYE 177
Query: 174 ERQVFANIAYNPSSLAHLRRQV 195
ER VFA++A +P L+RQ+
Sbjct: 178 ERLVFASMANHPM----LKRQI 195
>gi|195456746|ref|XP_002075269.1| GK17103 [Drosophila willistoni]
gi|194171354|gb|EDW86255.1| GK17103 [Drosophila willistoni]
Length = 460
Score = 248 bits (634), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 115/147 (78%), Positives = 129/147 (87%), Gaps = 4/147 (2%)
Query: 50 GLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYL 109
G + CA CGK I +R+LL+ALD+ WHEDCLKCGCCDCRLGEVGSTLY K NL+LCKRDYL
Sbjct: 121 GSQLCAGCGKHIQDRYLLRALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYL 180
Query: 110 RLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCE 169
RLFG TGYCAAC+KVIPAFEMVMRA+ NVYHLECFACQQCNHRFCVGDRFYLC+NKILCE
Sbjct: 181 RLFGNTGYCAACSKVIPAFEMVMRARTNVYHLECFACQQCNHRFCVGDRFYLCENKILCE 240
Query: 170 YDYEERQVFANIAYNPSSLAHLRRQVT 196
YDYEER VFA++A +P L+R V+
Sbjct: 241 YDYEERLVFASMANHPM----LKRHVS 263
>gi|2133743|pir||S61522 LMO protein - fruit fly (Drosophila sp.)
gi|1854501|emb|CAA58141.1| dttg [Drosophila sp.]
Length = 266
Score = 248 bits (634), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 115/147 (78%), Positives = 129/147 (87%), Gaps = 4/147 (2%)
Query: 50 GLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYL 109
G + CA CGK I +R+LL+ALD+ WHEDCLKCGCCDCRLGEVGSTLY K NL+LCKRDYL
Sbjct: 41 GSQLCAGCGKHIQDRYLLRALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYL 100
Query: 110 RLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCE 169
RLFG TGYCAAC+KVIPAFEMVMRA+ NVYHLECFACQQCNHRFCVGDRFYLC+NKILCE
Sbjct: 101 RLFGNTGYCAACSKVIPAFEMVMRARTNVYHLECFACQQCNHRFCVGDRFYLCENKILCE 160
Query: 170 YDYEERQVFANIAYNPSSLAHLRRQVT 196
YDYEER VFA++A +P L+R V+
Sbjct: 161 YDYEERLVFASMANHPM----LKRHVS 183
>gi|442616866|ref|NP_001259688.1| beadex, isoform E [Drosophila melanogaster]
gi|440216922|gb|AGB95530.1| beadex, isoform E [Drosophila melanogaster]
Length = 327
Score = 248 bits (634), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 115/147 (78%), Positives = 129/147 (87%), Gaps = 4/147 (2%)
Query: 50 GLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYL 109
G + CA CGK I +R+LL+ALD+ WHEDCLKCGCCDCRLGEVGSTLY K NL+LCKRDYL
Sbjct: 102 GSQLCAGCGKHIQDRYLLRALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYL 161
Query: 110 RLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCE 169
RLFG TGYCAAC+KVIPAFEMVMRA+ NVYHLECFACQQCNHRFCVGDRFYLC+NKILCE
Sbjct: 162 RLFGNTGYCAACSKVIPAFEMVMRARTNVYHLECFACQQCNHRFCVGDRFYLCENKILCE 221
Query: 170 YDYEERQVFANIAYNPSSLAHLRRQVT 196
YDYEER VFA++A +P L+R V+
Sbjct: 222 YDYEERLVFASMANHPM----LKRHVS 244
>gi|383853634|ref|XP_003702327.1| PREDICTED: rhombotin-1-like [Megachile rotundata]
Length = 222
Score = 246 bits (628), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 109/148 (73%), Positives = 131/148 (88%), Gaps = 3/148 (2%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
+ECA CGK ITER+LLKALD+ WHEDCLKC CCDC+L +VGSTLY K+N ILCK+DYLR+
Sbjct: 18 QECAGCGKVITERYLLKALDMLWHEDCLKCSCCDCKLVDVGSTLYTKSNFILCKKDYLRM 77
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
FG++G+CA C K IPAFEMVMRA+ NVYHLECFACQQCNHRFC+GD+FYLC+NKILCEYD
Sbjct: 78 FGSSGHCAVCNKSIPAFEMVMRARTNVYHLECFACQQCNHRFCIGDKFYLCENKILCEYD 137
Query: 172 YEERQVFANIAYNP---SSLAHLRRQVT 196
YEER VFAN+A +P ++LAH++R +T
Sbjct: 138 YEERLVFANMALHPPHTATLAHIKRHLT 165
>gi|427782399|gb|JAA56651.1| Putative rhombotin-1 [Rhipicephalus pulchellus]
Length = 294
Score = 242 bits (618), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 119/158 (75%), Positives = 126/158 (79%), Gaps = 8/158 (5%)
Query: 37 SVTQGALAGGASG--GL---KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
S+T G GA G GL ECA C K I ERFLLKALD WHEDCLKC CCDCRLGEV
Sbjct: 25 SMTPGGNGLGALGMAGLLPGPECAGCQKPIRERFLLKALDQLWHEDCLKCACCDCRLGEV 84
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
GSTL+ KANLILCKRDYLRLFGTTG C+AC+K IPAFEMVMRA+ NVYHLECFACQ CNH
Sbjct: 85 GSTLFTKANLILCKRDYLRLFGTTGLCSACSKTIPAFEMVMRARGNVYHLECFACQHCNH 144
Query: 152 RFCVGDRFYLCDNKILCEYDYEERQVFANIAY---NPS 186
RFCVGDRFYL DNKILCEYDYEER F N+ + NPS
Sbjct: 145 RFCVGDRFYLLDNKILCEYDYEERLSFQNVPFPGHNPS 182
>gi|391348067|ref|XP_003748273.1| PREDICTED: insulin gene enhancer protein isl-1-like [Metaseiulus
occidentalis]
Length = 365
Score = 241 bits (615), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 111/163 (68%), Positives = 127/163 (77%), Gaps = 1/163 (0%)
Query: 20 SLRLATHYQVDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCL 79
S+ L + V + ++ V Q A + +G ECA C K I ER+LL+ALD WHEDCL
Sbjct: 67 SMSLNPNNSVLMNSNTDGVAQAA-SSVQNGAQPECAGCQKPIRERYLLRALDQLWHEDCL 125
Query: 80 KCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVY 139
KC CCDCRLGEVGSTL+ KANLILCKRDYLRLFG TG C+AC K IPAFEMVMRA+ NVY
Sbjct: 126 KCACCDCRLGEVGSTLFHKANLILCKRDYLRLFGVTGLCSACHKQIPAFEMVMRARGNVY 185
Query: 140 HLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFANIA 182
HLECFACQQCNHRFCVGDRFYL +N+ILCEYDYEER VF+ +
Sbjct: 186 HLECFACQQCNHRFCVGDRFYLHENRILCEYDYEERMVFSQMG 228
>gi|350427422|ref|XP_003494753.1| PREDICTED: LIM domain only protein 3-like [Bombus impatiens]
Length = 249
Score = 240 bits (613), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 107/145 (73%), Positives = 125/145 (86%), Gaps = 1/145 (0%)
Query: 53 ECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLF 112
ECA CGK ITER+LLKA+DLFWHEDCLKCGCCDCRLGEVGS+L+ +ANLILCKRDYLRLF
Sbjct: 19 ECAGCGKAITERYLLKAMDLFWHEDCLKCGCCDCRLGEVGSSLFTRANLILCKRDYLRLF 78
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
G G+CAAC K IP FEMVM+A++NVYHL+CFACQQC HRFCVGDRFYLC+NKILCE+DY
Sbjct: 79 GIPGHCAACNKQIPPFEMVMKARSNVYHLDCFACQQCTHRFCVGDRFYLCENKILCEFDY 138
Query: 173 EER-QVFANIAYNPSSLAHLRRQVT 196
EER P++LA+++RQ+
Sbjct: 139 EERLXXXXXXXXXPATLAYIKRQLP 163
>gi|241738255|ref|XP_002414040.1| rhombotin, putative [Ixodes scapularis]
gi|215507894|gb|EEC17348.1| rhombotin, putative [Ixodes scapularis]
Length = 285
Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 108/132 (81%), Positives = 114/132 (86%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
ECA C K I ERFLLKALD WHEDCLKC CCDCRLGEVGSTL+ KANLILCKRDYLRL
Sbjct: 64 PECAGCQKPIRERFLLKALDQLWHEDCLKCACCDCRLGEVGSTLFTKANLILCKRDYLRL 123
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
FGTTG C+AC+K IPAFEMVMRA+ NVYHLECFACQ CNHRFCVGDRFYL DNKILCEYD
Sbjct: 124 FGTTGLCSACSKTIPAFEMVMRARGNVYHLECFACQHCNHRFCVGDRFYLFDNKILCEYD 183
Query: 172 YEERQVFANIAY 183
YEER F N+ +
Sbjct: 184 YEERLSFQNVPF 195
>gi|443725165|gb|ELU12846.1| hypothetical protein CAPTEDRAFT_167130 [Capitella teleta]
Length = 173
Score = 237 bits (604), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 107/132 (81%), Positives = 120/132 (90%)
Query: 46 GASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCK 105
G G +ECA C K+IT+R+LLKAL+ FWHEDCLKC CCDCRLGEVGSTL+ KANL+LC+
Sbjct: 12 GGDGERQECAGCKKKITDRYLLKALEQFWHEDCLKCSCCDCRLGEVGSTLFTKANLLLCR 71
Query: 106 RDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNK 165
RDYLRLFG+TGYC+AC+K+IPAFEMVMR K NVYHLECFACQQCNHRFCVGDRFY+CDNK
Sbjct: 72 RDYLRLFGSTGYCSACSKMIPAFEMVMRVKGNVYHLECFACQQCNHRFCVGDRFYMCDNK 131
Query: 166 ILCEYDYEERQV 177
ILCEYDYEER V
Sbjct: 132 ILCEYDYEERMV 143
>gi|321468800|gb|EFX79783.1| hypothetical protein DAPPUDRAFT_51838 [Daphnia pulex]
Length = 161
Score = 237 bits (604), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 110/143 (76%), Positives = 127/143 (88%), Gaps = 1/143 (0%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
+EC CGK IT+R+LL+ALDL+WHEDCLKCGCCDCRL E GSTLY +ANL+LC+RDYLRL
Sbjct: 16 QECGGCGKFITDRYLLQALDLYWHEDCLKCGCCDCRLSENGSTLYTRANLVLCRRDYLRL 75
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
FGTTGYCAAC KVIPAFEMVM+AK NVYHLECFACQ CNHRFCVGD+FYLCDNKILCEYD
Sbjct: 76 FGTTGYCAACGKVIPAFEMVMKAKGNVYHLECFACQNCNHRFCVGDKFYLCDNKILCEYD 135
Query: 172 YEERQVFANIAYNPSSLAHLRRQ 194
YEER + A++ + P+ A L++Q
Sbjct: 136 YEERLLMASLEF-PNKRASLQQQ 157
>gi|350427425|ref|XP_003494754.1| PREDICTED: LIM domain only protein 3-like [Bombus impatiens]
Length = 220
Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 105/147 (71%), Positives = 126/147 (85%), Gaps = 3/147 (2%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
+EC CG+ ITER+LLK LD+FWHEDCLKC C+CRL E G +L+ K+NLILCK+DYL+L
Sbjct: 16 RECGGCGEVITERYLLKVLDMFWHEDCLKCNSCNCRLVEAGPSLFIKSNLILCKKDYLKL 75
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
FG TG+CAAC K IPAFEMVMRA+ NVYHLECFACQQCN+RFC+GD+F+LC+NKILCE D
Sbjct: 76 FGHTGHCAACNKTIPAFEMVMRARTNVYHLECFACQQCNYRFCIGDKFFLCENKILCESD 135
Query: 172 YEERQVFANIAYNPSS---LAHLRRQV 195
YEER VFAN+A +P S LAH++RQV
Sbjct: 136 YEERLVFANMAVHPPSTATLAHIKRQV 162
>gi|340710495|ref|XP_003393823.1| PREDICTED: LIM domain only protein 3-like [Bombus terrestris]
Length = 220
Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 105/147 (71%), Positives = 126/147 (85%), Gaps = 3/147 (2%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
+EC CG+ ITER+LLK LD+FWHEDCLKC C+CRL E G +L+ K+NLILCK+DYL+L
Sbjct: 16 RECGGCGEVITERYLLKVLDMFWHEDCLKCNSCNCRLVEAGPSLFIKSNLILCKKDYLKL 75
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
FG TG+CAAC K IPAFEMVMRA+ NVYHLECFACQQCN+RFC+GD+F+LC+NKILCE D
Sbjct: 76 FGHTGHCAACNKTIPAFEMVMRARTNVYHLECFACQQCNYRFCIGDKFFLCENKILCESD 135
Query: 172 YEERQVFANIAYNPSS---LAHLRRQV 195
YEER VFAN+A +P S LAH++RQV
Sbjct: 136 YEERLVFANMAVHPPSTATLAHIKRQV 162
>gi|241738278|ref|XP_002414049.1| rhombotin, putative [Ixodes scapularis]
gi|215507903|gb|EEC17357.1| rhombotin, putative [Ixodes scapularis]
Length = 242
Score = 233 bits (595), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 115/159 (72%), Positives = 124/159 (77%), Gaps = 1/159 (0%)
Query: 39 TQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQK 98
T + G A G ECA C K I ERFLLKALD WHEDCLKC CCDCRLGEVGSTL+ K
Sbjct: 34 TAVPMLGDALPG-PECAGCQKPIRERFLLKALDQLWHEDCLKCACCDCRLGEVGSTLFTK 92
Query: 99 ANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDR 158
ANLILCKRDYLRLFGTTG C+AC+K IPAFEMVMRA+ NVYHLECFACQQCNHRFCVGDR
Sbjct: 93 ANLILCKRDYLRLFGTTGLCSACSKAIPAFEMVMRARGNVYHLECFACQQCNHRFCVGDR 152
Query: 159 FYLCDNKILCEYDYEERQVFANIAYNPSSLAHLRRQVTL 197
FYL DN+ILCEYDYEER + A + LRR V +
Sbjct: 153 FYLHDNRILCEYDYEERALMAGVERLRQRGLALRRPVAM 191
>gi|48095039|ref|XP_394342.1| PREDICTED: LIM domain only protein 3-like [Apis mellifera]
Length = 218
Score = 233 bits (594), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 108/152 (71%), Positives = 128/152 (84%), Gaps = 4/152 (2%)
Query: 48 SGGL-KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKR 106
SG + +EC CG+ ITER+LLK LD+FWHEDCLKC C+CRL E G +LY K+NLILCK+
Sbjct: 11 SGAVQRECGGCGEVITERYLLKVLDMFWHEDCLKCNSCNCRLVEAGPSLYIKSNLILCKK 70
Query: 107 DYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKI 166
DYL+LFG TG+CAAC K IPAFEMVMRA+ NVYHLECFACQQCN+RFCVGD+F+LC+NKI
Sbjct: 71 DYLKLFGLTGHCAACNKTIPAFEMVMRARTNVYHLECFACQQCNYRFCVGDKFFLCENKI 130
Query: 167 LCEYDYEERQVFANIAYNPSS---LAHLRRQV 195
LCE DYEER VFAN+A +P S LA ++RQV
Sbjct: 131 LCESDYEERLVFANMAVHPPSTATLAQIKRQV 162
>gi|427781843|gb|JAA56373.1| Putative lim domain only 1 [Rhipicephalus pulchellus]
Length = 277
Score = 233 bits (593), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 107/131 (81%), Positives = 114/131 (87%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
ECA C K I ERFLLKALD WHEDCLKC CCDCRLGEVGSTL+ KANLILCKRDYLRL
Sbjct: 42 PECAGCQKPIRERFLLKALDQLWHEDCLKCACCDCRLGEVGSTLFTKANLILCKRDYLRL 101
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
FGTTG C+AC+K IPAFEMVMRA+ NVYHLECFACQQCNHRFCVGDRFYL DN+ILCEYD
Sbjct: 102 FGTTGLCSACSKAIPAFEMVMRARGNVYHLECFACQQCNHRFCVGDRFYLHDNRILCEYD 161
Query: 172 YEERQVFANIA 182
YEER + A +
Sbjct: 162 YEERALMAGVP 172
>gi|194892543|ref|XP_001977682.1| GG19173 [Drosophila erecta]
gi|190649331|gb|EDV46609.1| GG19173 [Drosophila erecta]
Length = 419
Score = 232 bits (592), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 115/183 (62%), Positives = 129/183 (70%), Gaps = 40/183 (21%)
Query: 50 GLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYL 109
G + CA CGK I +R+LL+ALD+ WHEDCLKCGCCDCRLGEVGSTLY K NL+LCKRDYL
Sbjct: 158 GSQLCAGCGKHIQDRYLLRALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYL 217
Query: 110 RLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHR----------------- 152
RLFG TGYCAAC+KVIPAFEMVMRA+ NVYHLECFACQQCNHR
Sbjct: 218 RLFGNTGYCAACSKVIPAFEMVMRARTNVYHLECFACQQCNHRAITITTTITTITTIAIS 277
Query: 153 -------------------FCVGDRFYLCDNKILCEYDYEERQVFANIAYNPSSLAHLRR 193
FCVGDRFYLC+NKILCEYDYEER VFA++A +P L+R
Sbjct: 278 IAAMSQVRSMPGKLQKKQKFCVGDRFYLCENKILCEYDYEERLVFASMANHPM----LKR 333
Query: 194 QVT 196
V+
Sbjct: 334 HVS 336
>gi|357620282|gb|EHJ72529.1| putative rhombotin [Danaus plexippus]
Length = 180
Score = 231 bits (589), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 107/127 (84%), Positives = 116/127 (91%)
Query: 70 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 129
++ FWHEDCLKCGCCDCRLGEVGS LY KA+L+LCKRDYLRLFG TG C AC KVIPAFE
Sbjct: 1 MERFWHEDCLKCGCCDCRLGEVGSKLYYKADLMLCKRDYLRLFGATGNCVACNKVIPAFE 60
Query: 130 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFANIAYNPSSLA 189
MVMRAK+ VYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEER VFA++A NPS LA
Sbjct: 61 MVMRAKSFVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERLVFASMAANPSGLA 120
Query: 190 HLRRQVT 196
H+RRQV+
Sbjct: 121 HIRRQVS 127
>gi|291230776|ref|XP_002735341.1| PREDICTED: LIM domain only 1-like [Saccoglossus kowalevskii]
Length = 311
Score = 230 bits (586), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 113/180 (62%), Positives = 134/180 (74%), Gaps = 8/180 (4%)
Query: 10 DICDYRSYFDSLRLATHYQVDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKA 69
+ CD ++ +++A Q TTD V L + CA C K+I +R+LLKA
Sbjct: 13 NTCD--NFNGHIKVAARCQGISTTDKVEVLDAPLEK------RNCAGCKKKIKDRYLLKA 64
Query: 70 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 129
L+ +WHEDCLKC CCDCRLGEVGSTLY KANL+LCKRDYLRLFGTTGYCAAC KVIPAFE
Sbjct: 65 LEQYWHEDCLKCACCDCRLGEVGSTLYIKANLMLCKRDYLRLFGTTGYCAACAKVIPAFE 124
Query: 130 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFANIAYNPSSLA 189
MVMRA++NVYHLECFACQQCNHRFCVGD+FYL +NKILCE DYE+ + A Y S++
Sbjct: 125 MVMRARDNVYHLECFACQQCNHRFCVGDKFYLRNNKILCEEDYEDAMMLAMGHYFKPSMS 184
>gi|405975337|gb|EKC39910.1| Rhombotin-1 [Crassostrea gigas]
Length = 198
Score = 226 bits (575), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 107/158 (67%), Positives = 129/158 (81%), Gaps = 14/158 (8%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLI-------LC 104
++CA C K I++RFLLKAL+ +WHEDCLKC CCDCRLGEVGSTL+ KANL+ +C
Sbjct: 22 QDCAGCKKAISDRFLLKALEQYWHEDCLKCSCCDCRLGEVGSTLFTKANLLHWLIRIEVC 81
Query: 105 KRD-------YLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGD 157
YLRLFGTTGYC+AC+K+IPAFEMVMRAK+NVYHLECFACQQCNHRFCVGD
Sbjct: 82 VSGGKDWQFIYLRLFGTTGYCSACSKMIPAFEMVMRAKSNVYHLECFACQQCNHRFCVGD 141
Query: 158 RFYLCDNKILCEYDYEERQVFANIAYNPSSLAHLRRQV 195
+FYLCDNKILCEYDYEER VFAN+ + ++L+ +++Q
Sbjct: 142 KFYLCDNKILCEYDYEERMVFANMTCSYNALSQIKKQT 179
>gi|195147434|ref|XP_002014685.1| GL18822 [Drosophila persimilis]
gi|194106638|gb|EDW28681.1| GL18822 [Drosophila persimilis]
Length = 381
Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 101/129 (78%), Positives = 110/129 (85%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA CGK I +R+ L+ALD+ WH+DCLKCGCCDCRLGEVGSTLY+ NLILCK DY RLFG
Sbjct: 187 CAGCGKHIKDRYFLRALDMLWHQDCLKCGCCDCRLGEVGSTLYKTGNLILCKLDYFRLFG 246
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
TGYCAAC+KVI AFEMVMRA NVYH +CFACQQCNHR CVGDRFYLC NKILCEYDYE
Sbjct: 247 NTGYCAACSKVISAFEMVMRAHTNVYHFDCFACQQCNHRLCVGDRFYLCKNKILCEYDYE 306
Query: 174 ERQVFANIA 182
E +FA IA
Sbjct: 307 EWLLFATIA 315
>gi|198473944|ref|XP_002132591.1| GA25913 [Drosophila pseudoobscura pseudoobscura]
gi|198138178|gb|EDY69993.1| GA25913 [Drosophila pseudoobscura pseudoobscura]
Length = 399
Score = 223 bits (569), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 101/129 (78%), Positives = 111/129 (86%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA CGK I +R+ L+ALD+ WH+DCLKCGCCDCRLGEVGSTLY+ NLILCK DY RLFG
Sbjct: 193 CAGCGKHIKDRYFLRALDMLWHQDCLKCGCCDCRLGEVGSTLYKTGNLILCKLDYFRLFG 252
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
TGYCAAC+KVI AFEMVMRA+ NVYHL CFACQQCN+R CVGDRFYLC NKILCEYDYE
Sbjct: 253 NTGYCAACSKVIFAFEMVMRARTNVYHLHCFACQQCNYRLCVGDRFYLCMNKILCEYDYE 312
Query: 174 ERQVFANIA 182
E +FA IA
Sbjct: 313 EWLLFATIA 321
>gi|380010949|ref|XP_003689578.1| PREDICTED: LOW QUALITY PROTEIN: LIM domain only protein 3-like
[Apis florea]
Length = 249
Score = 223 bits (568), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 109/145 (75%), Positives = 128/145 (88%), Gaps = 1/145 (0%)
Query: 53 ECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLF 112
ECA CGK ITER+LLKA+DLFWHEDCLKC CCDCRLGEVGS+L+ +ANLILCKRDYLRLF
Sbjct: 19 ECAGCGKAITERYLLKAMDLFWHEDCLKCXCCDCRLGEVGSSLFTRANLILCKRDYLRLF 78
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
G G+CAAC K IP FEMVM+A+ NVYHL+CFACQQC HRFCVGDRFYLC+NKILCE+DY
Sbjct: 79 GNPGHCAACNKQIPPFEMVMKARTNVYHLDCFACQQCTHRFCVGDRFYLCENKILCEFDY 138
Query: 173 EERQVFANIAYN-PSSLAHLRRQVT 196
EER FAN++ P++LA+++RQ+
Sbjct: 139 EERLAFANMSVQTPATLAYIKRQLP 163
>gi|195147432|ref|XP_002014684.1| GL19311 [Drosophila persimilis]
gi|194106637|gb|EDW28680.1| GL19311 [Drosophila persimilis]
Length = 399
Score = 220 bits (561), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 99/129 (76%), Positives = 111/129 (86%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA CGK I +R+ L+ALD+ WH+DCLKCGCCDCRLGEVGSTLY+ NL+LCK DY RLFG
Sbjct: 193 CAGCGKHIKDRYFLRALDMLWHQDCLKCGCCDCRLGEVGSTLYKTGNLMLCKLDYYRLFG 252
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
TGYCAAC+KVI AF+MVMRA+ NVYHL CFACQQCN+R CVGDRFYLC NKILCEYDYE
Sbjct: 253 NTGYCAACSKVIFAFQMVMRARTNVYHLHCFACQQCNYRLCVGDRFYLCMNKILCEYDYE 312
Query: 174 ERQVFANIA 182
E +FA IA
Sbjct: 313 EWLLFATIA 321
>gi|195177608|ref|XP_002028925.1| GL13160 [Drosophila persimilis]
gi|194107602|gb|EDW29645.1| GL13160 [Drosophila persimilis]
Length = 399
Score = 220 bits (561), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 99/129 (76%), Positives = 111/129 (86%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA CGK I +R+ L+ALD+ WH+DCLKCGCCDCRLGEVGSTLY+ NL+LCK DY RLFG
Sbjct: 193 CAGCGKHIKDRYFLRALDMLWHQDCLKCGCCDCRLGEVGSTLYKTGNLMLCKLDYYRLFG 252
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
TGYCAAC+KVI AF+MVMRA+ NVYHL CFACQQCN+R CVGDRFYLC NKILCEYDYE
Sbjct: 253 NTGYCAACSKVIFAFQMVMRARTNVYHLHCFACQQCNYRLCVGDRFYLCMNKILCEYDYE 312
Query: 174 ERQVFANIA 182
E +FA IA
Sbjct: 313 EWLLFATIA 321
>gi|410913147|ref|XP_003970050.1| PREDICTED: rhombotin-1-like [Takifugu rubripes]
Length = 158
Score = 215 bits (547), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 100/149 (67%), Positives = 121/149 (81%)
Query: 29 VDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRL 88
+ L D++ + L+ G K CA C ++I +R+LLKALD +WHEDCLKC CCDCRL
Sbjct: 1 MKLVYDSAGTSVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRL 60
Query: 89 GEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 148
GEVGSTLY KANLILC+RDYLRLFGTTG CAAC+K+IPAFEMVMRA++NVYHL+CFACQ
Sbjct: 61 GEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQL 120
Query: 149 CNHRFCVGDRFYLCDNKILCEYDYEERQV 177
CN RFCVGD+F+L +N ILC+ DYEE Q+
Sbjct: 121 CNQRFCVGDKFFLKNNMILCQMDYEEGQL 149
>gi|426245706|ref|XP_004016646.1| PREDICTED: rhombotin-1 [Ovis aries]
Length = 158
Score = 214 bits (546), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 101/144 (70%), Positives = 119/144 (82%)
Query: 34 DASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGS 93
+AS V L+ G K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGS
Sbjct: 6 EASGVGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDQYWHEDCLKCACCDCRLGEVGS 65
Query: 94 TLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRF 153
TLY KANLILC+RDYLRLFGTTG CAAC+K+IPAFEMVMRA++NVYHL+CFACQ CN RF
Sbjct: 66 TLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRF 125
Query: 154 CVGDRFYLCDNKILCEYDYEERQV 177
CVGD+F+L +N ILC+ DYEE Q+
Sbjct: 126 CVGDKFFLKNNMILCQMDYEEGQL 149
>gi|427778219|gb|JAA54561.1| Putative lim domain only 1 [Rhipicephalus pulchellus]
Length = 315
Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 107/169 (63%), Positives = 114/169 (67%), Gaps = 38/169 (22%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
ECA C K I ERFLLKALD WHEDCLKC CCDCRLGEVGSTL+ KANLILCKRDYLRL
Sbjct: 42 PECAGCQKPIRERFLLKALDQLWHEDCLKCACCDCRLGEVGSTLFTKANLILCKRDYLRL 101
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKN----------------------------------- 136
FGTTG C+AC+K IPAFEMVMRA+
Sbjct: 102 FGTTGLCSACSKAIPAFEMVMRARGXXLILCKRDYLRLFGTTGLCSACSKAIPAFEMVMR 161
Query: 137 ---NVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFANIA 182
NVYHLECFACQQCNHRFCVGDRFYL DN+ILCEYDYEER + A +
Sbjct: 162 ARGNVYHLECFACQQCNHRFCVGDRFYLHDNRILCEYDYEERALMAGVP 210
>gi|281341700|gb|EFB17284.1| hypothetical protein PANDA_004271 [Ailuropoda melanoleuca]
Length = 192
Score = 213 bits (543), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 99/135 (73%), Positives = 115/135 (85%)
Query: 43 LAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLI 102
L+ G K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLI
Sbjct: 49 LSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLI 108
Query: 103 LCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC 162
LC+RDYLRLFGTTG CAAC+K+IPAFEMVMRA++NVYHL+CFACQ CN RFCVGDRF+L
Sbjct: 109 LCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDRFFLK 168
Query: 163 DNKILCEYDYEERQV 177
+N ILC+ DYEE Q+
Sbjct: 169 NNMILCQMDYEEGQL 183
>gi|24659990|gb|AAH39512.1| LIM domain only 1 (rhombotin 1), partial [Homo sapiens]
Length = 217
Score = 213 bits (543), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 97/131 (74%), Positives = 113/131 (86%)
Query: 47 ASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKR 106
G K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+R
Sbjct: 78 PKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRR 137
Query: 107 DYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKI 166
DYLRLFGTTG CAAC+K+IPAFEMVMRA++NVYHL+CFACQ CN RFCVGD+F+L +N I
Sbjct: 138 DYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMI 197
Query: 167 LCEYDYEERQV 177
LC+ DYEE Q+
Sbjct: 198 LCQMDYEEGQL 208
>gi|301761580|ref|XP_002916216.1| PREDICTED: rhombotin-1-like [Ailuropoda melanoleuca]
Length = 163
Score = 213 bits (541), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 99/135 (73%), Positives = 115/135 (85%)
Query: 43 LAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLI 102
L+ G K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLI
Sbjct: 20 LSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLI 79
Query: 103 LCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC 162
LC+RDYLRLFGTTG CAAC+K+IPAFEMVMRA++NVYHL+CFACQ CN RFCVGDRF+L
Sbjct: 80 LCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDRFFLK 139
Query: 163 DNKILCEYDYEERQV 177
+N ILC+ DYEE Q+
Sbjct: 140 NNMILCQMDYEEGQL 154
>gi|326912347|ref|XP_003202514.1| PREDICTED: hypothetical protein LOC100545049, partial [Meleagris
gallopavo]
Length = 391
Score = 212 bits (540), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 95/123 (77%), Positives = 109/123 (88%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRL
Sbjct: 257 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 316
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
FG TG CAAC+K+IPAFEMVMRAK+NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ D
Sbjct: 317 FGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 376
Query: 172 YEE 174
YEE
Sbjct: 377 YEE 379
Score = 40.0 bits (92), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 54 CASCGKRITE-RFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLF 112
CA+C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 323 CAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTDYEEGL 381
Query: 113 GTTGY 117
GY
Sbjct: 382 MKEGY 386
>gi|395543424|ref|XP_003773618.1| PREDICTED: rhombotin-1 [Sarcophilus harrisii]
Length = 155
Score = 212 bits (540), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 100/144 (69%), Positives = 120/144 (83%), Gaps = 2/144 (1%)
Query: 36 SSVTQGA--LAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGS 93
S+ ++G L+ G K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGS
Sbjct: 3 STASEGVPMLSVHPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGS 62
Query: 94 TLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRF 153
TLY KANLILC+RDYLRLFGTTG CAAC+K+IPAFEMVMRA++NVYHL+CFACQ CN RF
Sbjct: 63 TLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRF 122
Query: 154 CVGDRFYLCDNKILCEYDYEERQV 177
CVGD+F+L +N ILC+ DYEE Q+
Sbjct: 123 CVGDKFFLKNNMILCQMDYEEGQL 146
>gi|327281281|ref|XP_003225377.1| PREDICTED: rhombotin-1-like [Anolis carolinensis]
Length = 155
Score = 212 bits (539), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 100/144 (69%), Positives = 119/144 (82%), Gaps = 2/144 (1%)
Query: 43 LAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLI 102
L+ G K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLI
Sbjct: 12 LSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLI 71
Query: 103 LCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC 162
LC+RDYLRLFGTTG CAAC+K+IPAFEMVMRA++NVYHL+CFACQ CN RFCVGD+F+L
Sbjct: 72 LCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLK 131
Query: 163 DNKILCEYDYEERQVFANIAYNPS 186
+N ILC+ DYEE Q+ N ++ P
Sbjct: 132 NNMILCQMDYEEGQL--NGSFEPQ 153
>gi|163915157|ref|NP_001106526.1| rhombotin-1 [Sus scrofa]
gi|160858218|dbj|BAF93842.1| LIM domain only 1 [Sus scrofa]
Length = 156
Score = 212 bits (539), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 100/145 (68%), Positives = 119/145 (82%), Gaps = 2/145 (1%)
Query: 43 LAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLI 102
L+ G K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLI
Sbjct: 13 LSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLI 72
Query: 103 LCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC 162
LC+RDYLRLFGTTG CAAC+K+IPAFEMVMRA++NVYHL+CFACQ CN RFCVGD+F+L
Sbjct: 73 LCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLK 132
Query: 163 DNKILCEYDYEERQVFANIAYNPSS 187
+N ILC+ DYEE Q+ A+ P +
Sbjct: 133 NNMILCQLDYEEGQLTG--AFEPQA 155
>gi|226442662|ref|NP_001139870.1| Rhombotin-1 [Salmo salar]
gi|221219524|gb|ACM08423.1| Rhombotin-1 [Salmo salar]
Length = 155
Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 98/135 (72%), Positives = 115/135 (85%)
Query: 43 LAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLI 102
L+ G K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLI
Sbjct: 12 LSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLI 71
Query: 103 LCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC 162
LC+RDYLRLFGTTG CAAC+K+IPAFEMVMRA++NVYHL+CFACQ CN RFCVGD+F+L
Sbjct: 72 LCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLK 131
Query: 163 DNKILCEYDYEERQV 177
+N ILC+ DYEE Q+
Sbjct: 132 NNMILCQMDYEEGQL 146
>gi|147906368|ref|NP_001089735.1| rhombotin-1 [Xenopus laevis]
gi|170671950|ref|NP_001116283.1| uncharacterized protein LOC100144284 [Xenopus (Silurana)
tropicalis]
gi|123899828|sp|Q3B8H4.1|RBTN1_XENLA RecName: Full=Rhombotin-1; AltName: Full=LIM domain only protein 1;
Short=LMO-1
gi|77748294|gb|AAI06432.1| MGC131122 protein [Xenopus laevis]
gi|165905264|gb|AAI57153.1| LOC100144284 protein [Xenopus (Silurana) tropicalis]
Length = 156
Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 98/135 (72%), Positives = 115/135 (85%)
Query: 43 LAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLI 102
L+ G K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLI
Sbjct: 13 LSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLI 72
Query: 103 LCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC 162
LC+RDYLRLFGTTG CAAC+K+IPAFEMVMRA++NVYHL+CFACQ CN RFCVGD+F+L
Sbjct: 73 LCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLK 132
Query: 163 DNKILCEYDYEERQV 177
+N ILC+ DYEE Q+
Sbjct: 133 NNMILCQMDYEEGQL 147
>gi|350534892|ref|NP_001232644.1| putative LIM domain only 1 variant 2 [Taeniopygia guttata]
gi|197127604|gb|ACH44102.1| putative LIM domain only 1 variant 2 [Taeniopygia guttata]
Length = 156
Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 98/135 (72%), Positives = 115/135 (85%)
Query: 43 LAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLI 102
L+ G K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLI
Sbjct: 13 LSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLI 72
Query: 103 LCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC 162
LC+RDYLRLFGTTG CAAC+K+IPAFEMVMRA++NVYHL+CFACQ CN RFCVGD+F+L
Sbjct: 73 LCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLK 132
Query: 163 DNKILCEYDYEERQV 177
+N ILC+ DYEE Q+
Sbjct: 133 NNMILCQMDYEEGQL 147
>gi|410044796|ref|XP_003951874.1| PREDICTED: rhombotin-1 [Pan troglodytes]
Length = 193
Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 97/131 (74%), Positives = 113/131 (86%)
Query: 47 ASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKR 106
G K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+R
Sbjct: 54 PKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRR 113
Query: 107 DYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKI 166
DYLRLFGTTG CAAC+K+IPAFEMVMRA++NVYHL+CFACQ CN RFCVGD+F+L +N I
Sbjct: 114 DYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMI 173
Query: 167 LCEYDYEERQV 177
LC+ DYEE Q+
Sbjct: 174 LCQMDYEEGQL 184
>gi|126332439|ref|XP_001379124.1| PREDICTED: rhombotin-1-like [Monodelphis domestica]
Length = 214
Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 97/131 (74%), Positives = 113/131 (86%)
Query: 47 ASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKR 106
G K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+R
Sbjct: 75 PKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRR 134
Query: 107 DYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKI 166
DYLRLFGTTG CAAC+K+IPAFEMVMRA++NVYHL+CFACQ CN RFCVGD+F+L +N I
Sbjct: 135 DYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMI 194
Query: 167 LCEYDYEERQV 177
LC+ DYEE Q+
Sbjct: 195 LCQMDYEEGQL 205
>gi|4505005|ref|NP_002306.1| rhombotin-1 isoform a [Homo sapiens]
gi|73988404|ref|XP_851199.1| PREDICTED: rhombotin-1 isoform 1 [Canis lupus familiaris]
gi|149719424|ref|XP_001504951.1| PREDICTED: rhombotin-1-like [Equus caballus]
gi|297268472|ref|XP_002799696.1| PREDICTED: rhombotin-1-like [Macaca mulatta]
gi|297689330|ref|XP_002822108.1| PREDICTED: rhombotin-1 isoform 1 [Pongo abelii]
gi|332211700|ref|XP_003254951.1| PREDICTED: rhombotin-1 isoform 1 [Nomascus leucogenys]
gi|332835816|ref|XP_003312955.1| PREDICTED: rhombotin-1 isoform 2 [Pan troglodytes]
gi|390470213|ref|XP_003734256.1| PREDICTED: rhombotin-1-like [Callithrix jacchus]
gi|395815205|ref|XP_003781125.1| PREDICTED: rhombotin-1 isoform 1 [Otolemur garnettii]
gi|397494622|ref|XP_003818173.1| PREDICTED: rhombotin-1 isoform 1 [Pan paniscus]
gi|402894304|ref|XP_003910306.1| PREDICTED: rhombotin-1 isoform 1 [Papio anubis]
gi|403254192|ref|XP_003919861.1| PREDICTED: rhombotin-1 [Saimiri boliviensis boliviensis]
gi|410973386|ref|XP_003993134.1| PREDICTED: rhombotin-1 [Felis catus]
gi|426367359|ref|XP_004050700.1| PREDICTED: rhombotin-1 isoform 1 [Gorilla gorilla gorilla]
gi|132532|sp|P25800.1|RBTN1_HUMAN RecName: Full=Rhombotin-1; AltName: Full=Cysteine-rich protein
TTG-1; AltName: Full=LIM domain only protein 1;
Short=LMO-1; AltName: Full=T-cell translocation protein
1
gi|340454|gb|AAA36819.1| T-cell translocation protein [Homo sapiens]
gi|11071536|emb|CAC14587.1| LIM domain only 1 protein [Homo sapiens]
gi|46854536|gb|AAH69793.1| LIM domain only 1 (rhombotin 1) [Homo sapiens]
gi|46854582|gb|AAH69752.1| LIM domain only 1 (rhombotin 1) [Homo sapiens]
gi|46854710|gb|AAH69673.1| LIM domain only 1 (rhombotin 1) [Homo sapiens]
gi|64654051|gb|AAH96056.1| LIM domain only 1 (rhombotin 1) [Homo sapiens]
gi|64654605|gb|AAH96057.1| LIM domain only 1 (rhombotin 1) [Homo sapiens]
gi|119589032|gb|EAW68626.1| LIM domain only 1 (rhombotin 1) [Homo sapiens]
gi|312152710|gb|ADQ32867.1| LIM domain only 1 (rhombotin 1) [synthetic construct]
Length = 156
Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 98/135 (72%), Positives = 115/135 (85%)
Query: 43 LAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLI 102
L+ G K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLI
Sbjct: 13 LSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLI 72
Query: 103 LCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC 162
LC+RDYLRLFGTTG CAAC+K+IPAFEMVMRA++NVYHL+CFACQ CN RFCVGD+F+L
Sbjct: 73 LCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLK 132
Query: 163 DNKILCEYDYEERQV 177
+N ILC+ DYEE Q+
Sbjct: 133 NNMILCQMDYEEGQL 147
>gi|441645968|ref|XP_004090708.1| PREDICTED: rhombotin-1 isoform 2 [Nomascus leucogenys]
Length = 193
Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 97/131 (74%), Positives = 113/131 (86%)
Query: 47 ASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKR 106
G K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+R
Sbjct: 54 PKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRR 113
Query: 107 DYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKI 166
DYLRLFGTTG CAAC+K+IPAFEMVMRA++NVYHL+CFACQ CN RFCVGD+F+L +N I
Sbjct: 114 DYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMI 173
Query: 167 LCEYDYEERQV 177
LC+ DYEE Q+
Sbjct: 174 LCQMDYEEGQL 184
>gi|116734837|ref|NP_001069363.1| rhombotin-1 [Bos taurus]
gi|119361442|sp|Q0P5B3.1|RBTN1_BOVIN RecName: Full=Rhombotin-1; AltName: Full=LIM domain only protein 1;
Short=LMO-1
gi|112362108|gb|AAI20274.1| LIM domain only 1 (rhombotin 1) [Bos taurus]
gi|296480122|tpg|DAA22237.1| TPA: rhombotin-1 [Bos taurus]
Length = 156
Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 98/135 (72%), Positives = 115/135 (85%)
Query: 43 LAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLI 102
L+ G K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLI
Sbjct: 13 LSVQPKGKQKGCAGCNRKIKDRYLLKALDQYWHEDCLKCACCDCRLGEVGSTLYTKANLI 72
Query: 103 LCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC 162
LC+RDYLRLFGTTG CAAC+K+IPAFEMVMRA++NVYHL+CFACQ CN RFCVGD+F+L
Sbjct: 73 LCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLK 132
Query: 163 DNKILCEYDYEERQV 177
+N ILC+ DYEE Q+
Sbjct: 133 NNMILCQMDYEEGQL 147
>gi|426367361|ref|XP_004050701.1| PREDICTED: rhombotin-1 isoform 2 [Gorilla gorilla gorilla]
Length = 193
Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 97/131 (74%), Positives = 113/131 (86%)
Query: 47 ASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKR 106
G K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+R
Sbjct: 54 PKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRR 113
Query: 107 DYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKI 166
DYLRLFGTTG CAAC+K+IPAFEMVMRA++NVYHL+CFACQ CN RFCVGD+F+L +N I
Sbjct: 114 DYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMI 173
Query: 167 LCEYDYEERQV 177
LC+ DYEE Q+
Sbjct: 174 LCQMDYEEGQL 184
>gi|394025675|ref|NP_001257357.1| rhombotin-1 isoform b [Homo sapiens]
gi|332835818|ref|XP_001165367.2| PREDICTED: rhombotin-1 isoform 1 [Pan troglodytes]
gi|395815207|ref|XP_003781126.1| PREDICTED: rhombotin-1 isoform 2 [Otolemur garnettii]
gi|402894306|ref|XP_003910307.1| PREDICTED: rhombotin-1 isoform 2 [Papio anubis]
Length = 155
Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 98/135 (72%), Positives = 115/135 (85%)
Query: 43 LAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLI 102
L+ G K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLI
Sbjct: 12 LSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLI 71
Query: 103 LCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC 162
LC+RDYLRLFGTTG CAAC+K+IPAFEMVMRA++NVYHL+CFACQ CN RFCVGD+F+L
Sbjct: 72 LCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLK 131
Query: 163 DNKILCEYDYEERQV 177
+N ILC+ DYEE Q+
Sbjct: 132 NNMILCQMDYEEGQL 146
>gi|354497087|ref|XP_003510653.1| PREDICTED: rhombotin-1-like [Cricetulus griseus]
Length = 156
Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 98/135 (72%), Positives = 115/135 (85%)
Query: 43 LAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLI 102
L+ G K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLI
Sbjct: 13 LSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLI 72
Query: 103 LCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC 162
LC+RDYLRLFGTTG CAAC+K+IPAFEMVMRA++NVYHL+CFACQ CN RFCVGD+F+L
Sbjct: 73 LCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLK 132
Query: 163 DNKILCEYDYEERQV 177
+N ILC+ DYEE Q+
Sbjct: 133 NNMILCQMDYEEGQL 147
>gi|27545195|ref|NP_775326.1| rhombotin-1 [Danio rerio]
gi|432851744|ref|XP_004067063.1| PREDICTED: rhombotin-1-like [Oryzias latipes]
gi|82213250|sp|Q8JFQ2.1|RBTN1_DANRE RecName: Full=Rhombotin-1; AltName: Full=LIM domain only protein 1;
Short=LMO-1
gi|22652062|gb|AAN03595.1|AF398514_1 LIM-only 1 [Danio rerio]
gi|62531025|gb|AAH92690.1| LIM domain only 1 [Danio rerio]
gi|182889294|gb|AAI64905.1| Lmo1 protein [Danio rerio]
Length = 155
Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 98/135 (72%), Positives = 115/135 (85%)
Query: 43 LAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLI 102
L+ G K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLI
Sbjct: 12 LSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLI 71
Query: 103 LCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC 162
LC+RDYLRLFGTTG CAAC+K+IPAFEMVMRA++NVYHL+CFACQ CN RFCVGD+F+L
Sbjct: 72 LCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLK 131
Query: 163 DNKILCEYDYEERQV 177
+N ILC+ DYEE Q+
Sbjct: 132 NNMILCQMDYEEGQL 146
>gi|260785867|ref|XP_002587981.1| hypothetical protein BRAFLDRAFT_88960 [Branchiostoma floridae]
gi|229273137|gb|EEN43992.1| hypothetical protein BRAFLDRAFT_88960 [Branchiostoma floridae]
Length = 198
Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 93/121 (76%), Positives = 109/121 (90%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C K+I +R+LLKALD FWHEDCLKC CC+CRLGEVGSTL+ KANLILC+RDYLRLFG
Sbjct: 51 CAGCKKKIKDRYLLKALDQFWHEDCLKCACCECRLGEVGSTLFTKANLILCRRDYLRLFG 110
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
TTG CA C K+IPAFE+VMRA NNVYHL+CFACQ+CNHRFCVGD+F+LC+N ILC+ DY+
Sbjct: 111 TTGSCAVCAKIIPAFEIVMRAGNNVYHLDCFACQRCNHRFCVGDKFFLCENTILCQLDYQ 170
Query: 174 E 174
+
Sbjct: 171 D 171
>gi|120974283|gb|ABM46668.1| LMO1 [Gorilla gorilla]
gi|121483886|gb|ABM54243.1| LMO1 [Pan paniscus]
gi|124111156|gb|ABM91959.1| LMO1 [Pan troglodytes]
Length = 147
Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 98/135 (72%), Positives = 115/135 (85%)
Query: 43 LAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLI 102
L+ G K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLI
Sbjct: 4 LSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLI 63
Query: 103 LCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC 162
LC+RDYLRLFGTTG CAAC+K+IPAFEMVMRA++NVYHL+CFACQ CN RFCVGD+F+L
Sbjct: 64 LCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLK 123
Query: 163 DNKILCEYDYEERQV 177
+N ILC+ DYEE Q+
Sbjct: 124 NNMILCQMDYEEGQL 138
>gi|432103234|gb|ELK30474.1| Rhombotin-1, partial [Myotis davidii]
Length = 156
Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 98/135 (72%), Positives = 115/135 (85%)
Query: 43 LAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLI 102
L+ G K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLI
Sbjct: 13 LSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLI 72
Query: 103 LCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC 162
LC+RDYLRLFGTTG CAAC+K+IPAFEMVMRA++NVYHL+CFACQ CN RFCVGD+F+L
Sbjct: 73 LCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLK 132
Query: 163 DNKILCEYDYEERQV 177
+N ILC+ DYEE Q+
Sbjct: 133 NNMILCQMDYEEGQL 147
>gi|326920034|ref|XP_003206281.1| PREDICTED: rhombotin-1-like [Meleagris gallopavo]
gi|363734128|ref|XP_003641345.1| PREDICTED: rhombotin-1-like isoform 1 [Gallus gallus]
gi|363734130|ref|XP_003641346.1| PREDICTED: rhombotin-1-like isoform 2 [Gallus gallus]
Length = 145
Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 98/135 (72%), Positives = 115/135 (85%)
Query: 43 LAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLI 102
L+ G K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLI
Sbjct: 2 LSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLI 61
Query: 103 LCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC 162
LC+RDYLRLFGTTG CAAC+K+IPAFEMVMRA++NVYHL+CFACQ CN RFCVGD+F+L
Sbjct: 62 LCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLK 121
Query: 163 DNKILCEYDYEERQV 177
+N ILC+ DYEE Q+
Sbjct: 122 NNMILCQMDYEEGQL 136
>gi|431919610|gb|ELK17998.1| Rhombotin-1 [Pteropus alecto]
Length = 145
Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 98/135 (72%), Positives = 115/135 (85%)
Query: 43 LAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLI 102
L+ G K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLI
Sbjct: 2 LSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLI 61
Query: 103 LCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC 162
LC+RDYLRLFGTTG CAAC+K+IPAFEMVMRA++NVYHL+CFACQ CN RFCVGD+F+L
Sbjct: 62 LCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLK 121
Query: 163 DNKILCEYDYEERQV 177
+N ILC+ DYEE Q+
Sbjct: 122 NNMILCQMDYEEGQL 136
>gi|351700295|gb|EHB03214.1| Rhombotin-1, partial [Heterocephalus glaber]
gi|355566730|gb|EHH23109.1| hypothetical protein EGK_06496, partial [Macaca mulatta]
gi|355752348|gb|EHH56468.1| hypothetical protein EGM_05879, partial [Macaca fascicularis]
Length = 148
Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 98/135 (72%), Positives = 115/135 (85%)
Query: 43 LAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLI 102
L+ G K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLI
Sbjct: 5 LSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLI 64
Query: 103 LCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC 162
LC+RDYLRLFGTTG CAAC+K+IPAFEMVMRA++NVYHL+CFACQ CN RFCVGD+F+L
Sbjct: 65 LCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLK 124
Query: 163 DNKILCEYDYEERQV 177
+N ILC+ DYEE Q+
Sbjct: 125 NNMILCQMDYEEGQL 139
>gi|344280595|ref|XP_003412068.1| PREDICTED: rhombotin-1-like [Loxodonta africana]
gi|348553346|ref|XP_003462488.1| PREDICTED: rhombotin-1-like [Cavia porcellus]
gi|344248106|gb|EGW04210.1| Rhombotin-1 [Cricetulus griseus]
gi|444522351|gb|ELV13369.1| Rhombotin-1 [Tupaia chinensis]
Length = 145
Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 98/135 (72%), Positives = 115/135 (85%)
Query: 43 LAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLI 102
L+ G K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLI
Sbjct: 2 LSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLI 61
Query: 103 LCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC 162
LC+RDYLRLFGTTG CAAC+K+IPAFEMVMRA++NVYHL+CFACQ CN RFCVGD+F+L
Sbjct: 62 LCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLK 121
Query: 163 DNKILCEYDYEERQV 177
+N ILC+ DYEE Q+
Sbjct: 122 NNMILCQMDYEEGQL 136
>gi|348509785|ref|XP_003442427.1| PREDICTED: rhombotin-1-like [Oreochromis niloticus]
Length = 169
Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 98/135 (72%), Positives = 115/135 (85%)
Query: 43 LAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLI 102
L+ G K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLI
Sbjct: 26 LSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLI 85
Query: 103 LCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC 162
LC+RDYLRLFGTTG CAAC+K+IPAFEMVMRA++NVYHL+CFACQ CN RFCVGD+F+L
Sbjct: 86 LCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLK 145
Query: 163 DNKILCEYDYEERQV 177
+N ILC+ DYEE Q+
Sbjct: 146 NNMILCQMDYEEGQL 160
>gi|449280864|gb|EMC88089.1| Rhombotin-1, partial [Columba livia]
Length = 151
Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 98/135 (72%), Positives = 115/135 (85%)
Query: 43 LAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLI 102
L+ G K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLI
Sbjct: 8 LSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLI 67
Query: 103 LCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC 162
LC+RDYLRLFGTTG CAAC+K+IPAFEMVMRA++NVYHL+CFACQ CN RFCVGD+F+L
Sbjct: 68 LCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLK 127
Query: 163 DNKILCEYDYEERQV 177
+N ILC+ DYEE Q+
Sbjct: 128 NNMILCQMDYEEGQL 142
>gi|440900839|gb|ELR51884.1| Rhombotin-1, partial [Bos grunniens mutus]
Length = 148
Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 98/135 (72%), Positives = 115/135 (85%)
Query: 43 LAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLI 102
L+ G K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLI
Sbjct: 5 LSVQPKGKQKGCAGCNRKIKDRYLLKALDQYWHEDCLKCACCDCRLGEVGSTLYTKANLI 64
Query: 103 LCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC 162
LC+RDYLRLFGTTG CAAC+K+IPAFEMVMRA++NVYHL+CFACQ CN RFCVGD+F+L
Sbjct: 65 LCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLK 124
Query: 163 DNKILCEYDYEERQV 177
+N ILC+ DYEE Q+
Sbjct: 125 NNMILCQMDYEEGQL 139
>gi|321454865|gb|EFX66018.1| hypothetical protein DAPPUDRAFT_65078 [Daphnia pulex]
Length = 137
Score = 210 bits (534), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 98/121 (80%), Positives = 108/121 (89%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA CG+ I +R+LL+ALD +WHEDCLKC CC CRLGEVGS L+ KANLILCKRDYLRLFG
Sbjct: 17 CAGCGQLIKDRYLLQALDSYWHEDCLKCSCCGCRLGEVGSNLFTKANLILCKRDYLRLFG 76
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
TG CAAC K IPAFEMVMRAK+NVYHL+CFACQQC+ RFCVGDRFYLCDN+ILCEYDYE
Sbjct: 77 ATGNCAACCKAIPAFEMVMRAKSNVYHLDCFACQQCHQRFCVGDRFYLCDNQILCEYDYE 136
Query: 174 E 174
E
Sbjct: 137 E 137
>gi|324520352|gb|ADY47616.1| LIM domain only protein 3 [Ascaris suum]
Length = 163
Score = 210 bits (534), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 95/142 (66%), Positives = 112/142 (78%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA+C RI +RF+L+AL WHEDCLKC CC CRLGE+GS LY K ++ILC RDYLRLFG
Sbjct: 6 CAACSLRIRDRFMLRALGKLWHEDCLKCTCCHCRLGELGSKLYYKQSMILCARDYLRLFG 65
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
TG CAAC K IPAFE+VMRAK+NVYHL+CFAC CNHRFC+GD++YLCDNKILC+YDYE
Sbjct: 66 LTGVCAACDKNIPAFELVMRAKSNVYHLQCFACHICNHRFCIGDKYYLCDNKILCQYDYE 125
Query: 174 ERQVFANIAYNPSSLAHLRRQV 195
ER F AYN S + + +
Sbjct: 126 ERMTFLQAAYNNQSFTEITKNI 147
>gi|391328654|ref|XP_003738800.1| PREDICTED: rhombotin-1-like [Metaseiulus occidentalis]
Length = 193
Score = 209 bits (532), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 98/139 (70%), Positives = 110/139 (79%)
Query: 35 ASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGST 94
+S + G + G C C K I ER+LLKAL+ FWHEDCLKC CC+CRLGEVGST
Sbjct: 19 TNSTMSNGVVGASQGDELHCTGCQKPIRERYLLKALEQFWHEDCLKCACCECRLGEVGST 78
Query: 95 LYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFC 154
L+ K+NLILCKRDYLRLFGTTG C AC K IPAFEMVMRAK NVYHL+CFACQQCN RFC
Sbjct: 79 LFTKSNLILCKRDYLRLFGTTGLCCACEKGIPAFEMVMRAKGNVYHLDCFACQQCNLRFC 138
Query: 155 VGDRFYLCDNKILCEYDYE 173
VGDRF+L +N+ILCE DYE
Sbjct: 139 VGDRFFLHENRILCETDYE 157
>gi|149068370|gb|EDM17922.1| rCG40540, isoform CRA_b [Rattus norvegicus]
Length = 156
Score = 209 bits (531), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 97/132 (73%), Positives = 113/132 (85%)
Query: 43 LAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLI 102
L+ G K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLI
Sbjct: 13 LSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLI 72
Query: 103 LCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC 162
LC+RDYLRLFGTTG CAAC+K+IPAFEMVMRA++NVYHL+CFACQ CN RFCVGD+F+L
Sbjct: 73 LCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLK 132
Query: 163 DNKILCEYDYEE 174
+N ILC+ DYEE
Sbjct: 133 NNMILCQMDYEE 144
>gi|16975506|ref|NP_476514.1| rhombotin-1 [Mus musculus]
gi|50401115|sp|Q924W9.1|RBTN1_MOUSE RecName: Full=Rhombotin-1; AltName: Full=Cysteine-rich protein
TTG-1; AltName: Full=LIM domain only protein 1;
Short=LMO-1; AltName: Full=T-cell translocation protein
1
gi|14253116|emb|CAC39310.1| putative LMO1 homologue [Mus musculus]
gi|31418699|gb|AAH53074.1| LIM domain only 1 [Mus musculus]
gi|74227271|dbj|BAE21734.1| unnamed protein product [Mus musculus]
gi|148684982|gb|EDL16929.1| LIM domain only 1, isoform CRA_c [Mus musculus]
Length = 156
Score = 209 bits (531), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 97/132 (73%), Positives = 113/132 (85%)
Query: 43 LAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLI 102
L+ G K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLI
Sbjct: 13 LSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLI 72
Query: 103 LCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC 162
LC+RDYLRLFGTTG CAAC+K+IPAFEMVMRA++NVYHL+CFACQ CN RFCVGD+F+L
Sbjct: 73 LCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLK 132
Query: 163 DNKILCEYDYEE 174
+N ILC+ DYEE
Sbjct: 133 NNMILCQVDYEE 144
>gi|145651807|ref|NP_620812.2| LIM domain only protein 3 [Rattus norvegicus]
gi|149068369|gb|EDM17921.1| rCG40540, isoform CRA_a [Rattus norvegicus]
Length = 155
Score = 209 bits (531), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 97/132 (73%), Positives = 113/132 (85%)
Query: 43 LAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLI 102
L+ G K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLI
Sbjct: 12 LSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLI 71
Query: 103 LCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC 162
LC+RDYLRLFGTTG CAAC+K+IPAFEMVMRA++NVYHL+CFACQ CN RFCVGD+F+L
Sbjct: 72 LCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLK 131
Query: 163 DNKILCEYDYEE 174
+N ILC+ DYEE
Sbjct: 132 NNMILCQMDYEE 143
>gi|148684980|gb|EDL16927.1| LIM domain only 1, isoform CRA_a [Mus musculus]
Length = 155
Score = 209 bits (531), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 97/132 (73%), Positives = 113/132 (85%)
Query: 43 LAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLI 102
L+ G K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLI
Sbjct: 12 LSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLI 71
Query: 103 LCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC 162
LC+RDYLRLFGTTG CAAC+K+IPAFEMVMRA++NVYHL+CFACQ CN RFCVGD+F+L
Sbjct: 72 LCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLK 131
Query: 163 DNKILCEYDYEE 174
+N ILC+ DYEE
Sbjct: 132 NNMILCQVDYEE 143
>gi|13569715|gb|AAK31207.1|AF353304_1 neuronal specific transcription factor DAT1 [Rattus norvegicus]
Length = 155
Score = 209 bits (531), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 97/132 (73%), Positives = 113/132 (85%)
Query: 43 LAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLI 102
L+ G K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLI
Sbjct: 12 LSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLI 71
Query: 103 LCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC 162
LC+RDYLRLFGTTG CAAC+K+IPAFEMVMRA++NVYHL+CFACQ CN RFCVGD+F+L
Sbjct: 72 LCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLK 131
Query: 163 DNKILCEYDYEE 174
+N ILC+ DYEE
Sbjct: 132 NNMILCQTDYEE 143
Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 49 GGLKECASCGKRITE-RFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 107
G CA+C K I +++A D +H DC C C+ R VG + K N+ILC+ D
Sbjct: 82 GTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTD 140
Query: 108 YLRLFGTTGY 117
Y GY
Sbjct: 141 YEEGLMKEGY 150
>gi|149068371|gb|EDM17923.1| rCG40540, isoform CRA_c [Rattus norvegicus]
Length = 145
Score = 208 bits (530), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 97/132 (73%), Positives = 113/132 (85%)
Query: 43 LAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLI 102
L+ G K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLI
Sbjct: 2 LSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLI 61
Query: 103 LCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC 162
LC+RDYLRLFGTTG CAAC+K+IPAFEMVMRA++NVYHL+CFACQ CN RFCVGD+F+L
Sbjct: 62 LCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLK 121
Query: 163 DNKILCEYDYEE 174
+N ILC+ DYEE
Sbjct: 122 NNMILCQMDYEE 133
>gi|148684981|gb|EDL16928.1| LIM domain only 1, isoform CRA_b [Mus musculus]
Length = 145
Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 97/132 (73%), Positives = 113/132 (85%)
Query: 43 LAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLI 102
L+ G K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLI
Sbjct: 2 LSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLI 61
Query: 103 LCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC 162
LC+RDYLRLFGTTG CAAC+K+IPAFEMVMRA++NVYHL+CFACQ CN RFCVGD+F+L
Sbjct: 62 LCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLK 121
Query: 163 DNKILCEYDYEE 174
+N ILC+ DYEE
Sbjct: 122 NNMILCQVDYEE 133
>gi|34098349|sp|Q99MB5.2|LMO3_RAT RecName: Full=LIM domain only protein 3; Short=LMO-3; AltName:
Full=Neuronal-specific transcription factor DAT1
Length = 145
Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 97/132 (73%), Positives = 113/132 (85%)
Query: 43 LAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLI 102
L+ G K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLI
Sbjct: 2 LSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLI 61
Query: 103 LCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC 162
LC+RDYLRLFGTTG CAAC+K+IPAFEMVMRA++NVYHL+CFACQ CN RFCVGD+F+L
Sbjct: 62 LCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLK 121
Query: 163 DNKILCEYDYEE 174
+N ILC+ DYEE
Sbjct: 122 NNMILCQTDYEE 133
Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 49 GGLKECASCGKRITE-RFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 107
G CA+C K I +++A D +H DC C C+ R VG + K N+ILC+ D
Sbjct: 72 GTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTD 130
Query: 108 YLRLFGTTGY 117
Y GY
Sbjct: 131 YEEGLMKEGY 140
>gi|403286719|ref|XP_003934625.1| PREDICTED: LIM domain only protein 3 [Saimiri boliviensis
boliviensis]
Length = 163
Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 95/123 (77%), Positives = 109/123 (88%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRL
Sbjct: 29 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 88
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
FG TG CAAC+K+IPAFEMVMRAK+NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ D
Sbjct: 89 FGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 148
Query: 172 YEE 174
YEE
Sbjct: 149 YEE 151
Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 49 GGLKECASCGKRITE-RFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 107
G CA+C K I +++A D +H DC C C+ R VG + K N+ILC+ D
Sbjct: 90 GVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTD 148
Query: 108 YLRLFGTTGY 117
Y GY
Sbjct: 149 YEEGLMKEGY 158
>gi|343790984|ref|NP_001230541.1| LIM domain only protein 3 isoform 3 [Homo sapiens]
gi|332232844|ref|XP_003265612.1| PREDICTED: LIM domain only protein 3-like [Nomascus leucogenys]
gi|332838730|ref|XP_003313578.1| PREDICTED: uncharacterized protein LOC465319 [Pan troglodytes]
gi|397491239|ref|XP_003816580.1| PREDICTED: LIM domain only protein 3-like [Pan paniscus]
gi|426371876|ref|XP_004052866.1| PREDICTED: LIM domain only protein 3-like [Gorilla gorilla gorilla]
gi|194377506|dbj|BAG57701.1| unnamed protein product [Homo sapiens]
gi|221045430|dbj|BAH14392.1| unnamed protein product [Homo sapiens]
Length = 163
Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 95/123 (77%), Positives = 109/123 (88%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRL
Sbjct: 29 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 88
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
FG TG CAAC+K+IPAFEMVMRAK+NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ D
Sbjct: 89 FGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 148
Query: 172 YEE 174
YEE
Sbjct: 149 YEE 151
Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 49 GGLKECASCGKRITE-RFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 107
G CA+C K I +++A D +H DC C C+ R VG + K N+ILC+ D
Sbjct: 90 GVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTD 148
Query: 108 YLRLFGTTGY 117
Y GY
Sbjct: 149 YEEGLMKEGY 158
>gi|395850545|ref|XP_003797844.1| PREDICTED: LIM domain only protein 3 [Otolemur garnettii]
Length = 163
Score = 207 bits (528), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 95/123 (77%), Positives = 109/123 (88%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRL
Sbjct: 29 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 88
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
FG TG CAAC+K+IPAFEMVMRAK+NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ D
Sbjct: 89 FGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 148
Query: 172 YEE 174
YEE
Sbjct: 149 YEE 151
Score = 40.4 bits (93), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 49 GGLKECASCGKRITE-RFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 107
G CA+C K I +++A D +H DC C C+ R VG + K N+ILC+ D
Sbjct: 90 GVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTD 148
Query: 108 YLRLFGTTGY 117
Y GY
Sbjct: 149 YEEGLMKEGY 158
>gi|301766676|ref|XP_002918759.1| PREDICTED: LIM domain only protein 3-like [Ailuropoda melanoleuca]
Length = 163
Score = 207 bits (528), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 95/123 (77%), Positives = 109/123 (88%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRL
Sbjct: 29 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 88
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
FG TG CAAC+K+IPAFEMVMRAK+NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ D
Sbjct: 89 FGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 148
Query: 172 YEE 174
YEE
Sbjct: 149 YEE 151
Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 49 GGLKECASCGKRITE-RFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 107
G CA+C K I +++A D +H DC C C+ R VG + K N+ILC+ D
Sbjct: 90 GVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTD 148
Query: 108 YLRLFGTTGY 117
Y GY
Sbjct: 149 YEEGLMKEGY 158
>gi|426225422|ref|XP_004006865.1| PREDICTED: LIM domain only protein 3 [Ovis aries]
Length = 170
Score = 207 bits (528), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 95/123 (77%), Positives = 109/123 (88%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRL
Sbjct: 36 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 95
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
FG TG CAAC+K+IPAFEMVMRAK+NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ D
Sbjct: 96 FGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 155
Query: 172 YEE 174
YEE
Sbjct: 156 YEE 158
Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 49 GGLKECASCGKRITE-RFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 107
G CA+C K I +++A D +H DC C C+ R VG + K N+ILC+ D
Sbjct: 97 GVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTD 155
Query: 108 YLRLFGTTGY 117
Y GY
Sbjct: 156 YEEGLMKEGY 165
>gi|395538520|ref|XP_003771227.1| PREDICTED: LIM domain only protein 3 isoform 2 [Sarcophilus
harrisii]
Length = 163
Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 95/123 (77%), Positives = 109/123 (88%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRL
Sbjct: 29 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 88
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
FG TG CAAC+K+IPAFEMVMRAK+NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ D
Sbjct: 89 FGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 148
Query: 172 YEE 174
YEE
Sbjct: 149 YEE 151
Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 49 GGLKECASCGKRITE-RFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 107
G CA+C K I +++A D +H DC C C+ R VG + K N+ILC+ D
Sbjct: 90 GVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTD 148
Query: 108 YLRLFGTTGY 117
Y GY
Sbjct: 149 YEEGLMKEGY 158
>gi|296210850|ref|XP_002752233.1| PREDICTED: LIM domain only protein 3-like isoform 1 [Callithrix
jacchus]
Length = 167
Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 95/123 (77%), Positives = 109/123 (88%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRL
Sbjct: 33 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 92
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
FG TG CAAC+K+IPAFEMVMRAK+NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ D
Sbjct: 93 FGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 152
Query: 172 YEE 174
YEE
Sbjct: 153 YEE 155
Score = 40.4 bits (93), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 49 GGLKECASCGKRITE-RFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 107
G CA+C K I +++A D +H DC C C+ R VG + K N+ILC+ D
Sbjct: 94 GVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTD 152
Query: 108 YLRLFGTTGY 117
Y GY
Sbjct: 153 YEEGLMKEGY 162
>gi|345792348|ref|XP_866550.2| PREDICTED: LIM domain only protein 3 isoform 6 [Canis lupus
familiaris]
Length = 163
Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 95/123 (77%), Positives = 109/123 (88%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRL
Sbjct: 29 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 88
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
FG TG CAAC+K+IPAFEMVMRAK+NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ D
Sbjct: 89 FGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 148
Query: 172 YEE 174
YEE
Sbjct: 149 YEE 151
Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 49 GGLKECASCGKRITE-RFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 107
G CA+C K I +++A D +H DC C C+ R VG + K N+ILC+ D
Sbjct: 90 GVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTD 148
Query: 108 YLRLFGTTGY 117
Y GY
Sbjct: 149 YEEGLMKEGY 158
>gi|343790981|ref|NP_001230540.1| LIM domain only protein 3 isoform 2 [Homo sapiens]
gi|224096300|ref|XP_002196668.1| PREDICTED: LIM domain only protein 3 isoform 2 [Taeniopygia
guttata]
gi|296210852|ref|XP_002752234.1| PREDICTED: LIM domain only protein 3-like isoform 2 [Callithrix
jacchus]
gi|332232836|ref|XP_003265608.1| PREDICTED: LIM domain only protein 3-like [Nomascus leucogenys]
gi|332838722|ref|XP_520773.3| PREDICTED: uncharacterized protein LOC465319 [Pan troglodytes]
gi|345792350|ref|XP_003433617.1| PREDICTED: LIM domain only protein 3 [Canis lupus familiaris]
gi|363728014|ref|XP_416410.3| PREDICTED: LIM domain only protein 3 [Gallus gallus]
gi|395538518|ref|XP_003771226.1| PREDICTED: LIM domain only protein 3 isoform 1 [Sarcophilus
harrisii]
gi|397491237|ref|XP_003816579.1| PREDICTED: LIM domain only protein 3-like [Pan paniscus]
gi|403286717|ref|XP_003934624.1| PREDICTED: LIM domain only protein 3 [Saimiri boliviensis
boliviensis]
gi|410963922|ref|XP_003988507.1| PREDICTED: LIM domain only protein 3 isoform 1 [Felis catus]
gi|426225414|ref|XP_004006861.1| PREDICTED: LIM domain only protein 3 [Ovis aries]
gi|426371864|ref|XP_004052860.1| PREDICTED: LIM domain only protein 3-like [Gorilla gorilla gorilla]
gi|62148930|dbj|BAD93349.1| hypothetical protein [Homo sapiens]
gi|355564057|gb|EHH20557.1| hypothetical protein EGK_03435 [Macaca mulatta]
gi|355785943|gb|EHH66126.1| hypothetical protein EGM_03045 [Macaca fascicularis]
Length = 156
Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 95/123 (77%), Positives = 109/123 (88%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRL
Sbjct: 22 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 81
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
FG TG CAAC+K+IPAFEMVMRAK+NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ D
Sbjct: 82 FGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 141
Query: 172 YEE 174
YEE
Sbjct: 142 YEE 144
Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 49 GGLKECASCGKRITE-RFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 107
G CA+C K I +++A D +H DC C C+ R VG + K N+ILC+ D
Sbjct: 83 GVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTD 141
Query: 108 YLRLFGTTGY 117
Y GY
Sbjct: 142 YEEGLMKEGY 151
>gi|348569402|ref|XP_003470487.1| PREDICTED: LIM domain only protein 3-like [Cavia porcellus]
Length = 156
Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 97/144 (67%), Positives = 115/144 (79%)
Query: 31 LTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGE 90
++T + L+ K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGE
Sbjct: 1 MSTQQKTFCIQMLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGE 60
Query: 91 VGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCN 150
VGSTLY KANLILC+RDYLRLFG TG CAAC+K+IPAFEMVMRAK+NVYHL+CFACQ CN
Sbjct: 61 VGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCN 120
Query: 151 HRFCVGDRFYLCDNKILCEYDYEE 174
RFCVGD+F+L +N ILC+ DYEE
Sbjct: 121 QRFCVGDKFFLKNNMILCQTDYEE 144
Score = 40.4 bits (93), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 49 GGLKECASCGKRITE-RFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 107
G CA+C K I +++A D +H DC C C+ R VG + K N+ILC+ D
Sbjct: 83 GVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTD 141
Query: 108 YLRLFGTTGY 117
Y GY
Sbjct: 142 YEEGLMKEGY 151
>gi|432942706|ref|XP_004083043.1| PREDICTED: LIM domain only protein 3-like [Oryzias latipes]
Length = 156
Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 95/123 (77%), Positives = 109/123 (88%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRL
Sbjct: 22 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 81
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
FG TG CAAC+K+IPAFEMVMRAK+NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ D
Sbjct: 82 FGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 141
Query: 172 YEE 174
YEE
Sbjct: 142 YEE 144
Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 49 GGLKECASCGKRITE-RFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 107
G CA+C K I +++A D +H DC C C+ R VG + K N+ILC+ D
Sbjct: 83 GVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTD 141
Query: 108 YLRLFGTTGY 117
Y GY
Sbjct: 142 YEEGLMKDGY 151
>gi|395850543|ref|XP_003797843.1| PREDICTED: LIM domain only protein 3 [Otolemur garnettii]
Length = 156
Score = 206 bits (525), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 95/123 (77%), Positives = 109/123 (88%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRL
Sbjct: 22 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 81
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
FG TG CAAC+K+IPAFEMVMRAK+NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ D
Sbjct: 82 FGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 141
Query: 172 YEE 174
YEE
Sbjct: 142 YEE 144
Score = 40.4 bits (93), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 49 GGLKECASCGKRITE-RFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 107
G CA+C K I +++A D +H DC C C+ R VG + K N+ILC+ D
Sbjct: 83 GVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTD 141
Query: 108 YLRLFGTTGY 117
Y GY
Sbjct: 142 YEEGLMKEGY 151
>gi|348536393|ref|XP_003455681.1| PREDICTED: LIM domain only protein 3-like [Oreochromis niloticus]
Length = 156
Score = 206 bits (525), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 95/123 (77%), Positives = 108/123 (87%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRL
Sbjct: 22 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 81
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
FG TG CAAC+K+IPAFEMVMRAK NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ D
Sbjct: 82 FGVTGNCAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 141
Query: 172 YEE 174
YEE
Sbjct: 142 YEE 144
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 49 GGLKECASCGKRITE-RFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 107
G CA+C K I +++A + +H DC C C+ R VG + K N+ILC+ D
Sbjct: 83 GVTGNCAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTD 141
Query: 108 YLRLFGTTGY 117
Y GY
Sbjct: 142 YEEGLMKEGY 151
>gi|344251414|gb|EGW07518.1| LIM domain only protein 3 [Cricetulus griseus]
Length = 149
Score = 206 bits (524), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 95/123 (77%), Positives = 109/123 (88%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRL
Sbjct: 15 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 74
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
FG TG CAAC+K+IPAFEMVMRAK+NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ D
Sbjct: 75 FGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 134
Query: 172 YEE 174
YEE
Sbjct: 135 YEE 137
Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 49 GGLKECASCGKRITE-RFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 107
G CA+C K I +++A D +H DC C C+ R VG + K N+ILC+ D
Sbjct: 76 GVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTD 134
Query: 108 YLRLFGTTGY 117
Y GY
Sbjct: 135 YEEGLMKEGY 144
>gi|449271287|gb|EMC81748.1| LIM domain only protein 3, partial [Columba livia]
Length = 147
Score = 206 bits (524), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 95/123 (77%), Positives = 109/123 (88%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRL
Sbjct: 13 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 72
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
FG TG CAAC+K+IPAFEMVMRAK+NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ D
Sbjct: 73 FGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 132
Query: 172 YEE 174
YEE
Sbjct: 133 YEE 135
Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 49 GGLKECASCGKRITE-RFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 107
G CA+C K I +++A D +H DC C C+ R VG + K N+ILC+ D
Sbjct: 74 GVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTD 132
Query: 108 YLRLFGTTGY 117
Y GY
Sbjct: 133 YEEGLMKEGY 142
>gi|281352404|gb|EFB27988.1| hypothetical protein PANDA_007272 [Ailuropoda melanoleuca]
Length = 149
Score = 206 bits (524), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 95/123 (77%), Positives = 109/123 (88%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRL
Sbjct: 15 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 74
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
FG TG CAAC+K+IPAFEMVMRAK+NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ D
Sbjct: 75 FGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 134
Query: 172 YEE 174
YEE
Sbjct: 135 YEE 137
Score = 40.0 bits (92), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 49 GGLKECASCGKRITE-RFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 107
G CA+C K I +++A D +H DC C C+ R VG + K N+ILC+ D
Sbjct: 76 GVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTD 134
Query: 108 YLRLFGTTGY 117
Y GY
Sbjct: 135 YEEGLMKEGY 144
>gi|318052393|ref|NP_001187844.1| LIM domain only protein 3 [Ictalurus punctatus]
gi|308324124|gb|ADO29197.1| lim domain only protein 3 [Ictalurus punctatus]
Length = 156
Score = 206 bits (524), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 95/123 (77%), Positives = 108/123 (87%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRL
Sbjct: 22 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 81
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
FG TG CAAC+K+IPAFEMVMRAK NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ D
Sbjct: 82 FGVTGNCAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 141
Query: 172 YEE 174
YEE
Sbjct: 142 YEE 144
Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 49 GGLKECASCGKRITE-RFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 107
G CA+C K I +++A + +H DC C C+ R VG + K N+ILC+ D
Sbjct: 83 GVTGNCAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTD 141
Query: 108 YLRLFGTTGY 117
Y GY
Sbjct: 142 YEEGLMKEGY 151
>gi|147902408|ref|NP_001084116.1| LIM domain only protein 3 [Xenopus laevis]
gi|82225303|sp|Q9YH16.1|LMO3_XENLA RecName: Full=LIM domain only protein 3; Short=LMO-3; AltName:
Full=LIM domain only protein 1; Short=LMO-1; Short=xLMO1
gi|4100164|gb|AAD00763.1| transcription factor XLMO1 [Xenopus laevis]
Length = 156
Score = 206 bits (524), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 95/123 (77%), Positives = 108/123 (87%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRL
Sbjct: 22 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 81
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
FG TG CAAC+K+IPAFEMVMRAK NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ D
Sbjct: 82 FGVTGNCAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 141
Query: 172 YEE 174
YEE
Sbjct: 142 YEE 144
Score = 39.3 bits (90), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 49 GGLKECASCGKRITE-RFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 107
G CA+C K I +++A + +H DC C C+ R VG + K N+ILC+ D
Sbjct: 83 GVTGNCAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTD 141
Query: 108 YLRLFGTTGYCA 119
Y GY A
Sbjct: 142 YEEGLMKEGYSA 153
>gi|21361802|ref|NP_061110.2| LIM domain only protein 3 isoform 1 [Homo sapiens]
gi|46402195|ref|NP_997105.1| LIM domain only protein 3 [Mus musculus]
gi|47778935|ref|NP_001001395.1| LIM domain only protein 3 isoform 1 [Homo sapiens]
gi|114052438|ref|NP_001039802.1| LIM domain only protein 3 [Bos taurus]
gi|162951801|ref|NP_001106155.1| LIM domain only protein 3 [Sus scrofa]
gi|205830463|ref|NP_001127650.2| LIM domain only protein 3 isoform 2 [Pongo abelii]
gi|205830488|ref|NP_001125415.1| LIM domain only protein 3 isoform 1 [Pongo abelii]
gi|343790975|ref|NP_001230538.1| LIM domain only protein 3 isoform 1 [Homo sapiens]
gi|343790979|ref|NP_001230539.1| LIM domain only protein 3 isoform 1 [Homo sapiens]
gi|388453193|ref|NP_001253235.1| LIM domain only protein 3 [Macaca mulatta]
gi|73997103|ref|XP_866536.1| PREDICTED: LIM domain only protein 3 isoform 5 [Canis lupus
familiaris]
gi|224096294|ref|XP_002196644.1| PREDICTED: LIM domain only protein 3 isoform 1 [Taeniopygia
guttata]
gi|224096298|ref|XP_002196694.1| PREDICTED: LIM domain only protein 3 isoform 3 [Taeniopygia
guttata]
gi|291392560|ref|XP_002712669.1| PREDICTED: LIM domain only 3 [Oryctolagus cuniculus]
gi|296210858|ref|XP_002752237.1| PREDICTED: LIM domain only protein 3-like isoform 5 [Callithrix
jacchus]
gi|296210864|ref|XP_002752240.1| PREDICTED: LIM domain only protein 3-like isoform 8 [Callithrix
jacchus]
gi|327282546|ref|XP_003226003.1| PREDICTED: LIM domain only protein 3-like [Anolis carolinensis]
gi|332232834|ref|XP_003265607.1| PREDICTED: LIM domain only protein 3-like [Nomascus leucogenys]
gi|332232838|ref|XP_003265609.1| PREDICTED: LIM domain only protein 3-like [Nomascus leucogenys]
gi|332232840|ref|XP_003265610.1| PREDICTED: LIM domain only protein 3-like [Nomascus leucogenys]
gi|332232842|ref|XP_003265611.1| PREDICTED: LIM domain only protein 3-like [Nomascus leucogenys]
gi|332232846|ref|XP_003265613.1| PREDICTED: LIM domain only protein 3-like [Nomascus leucogenys]
gi|332232848|ref|XP_003265614.1| PREDICTED: LIM domain only protein 3-like [Nomascus leucogenys]
gi|332232850|ref|XP_003265615.1| PREDICTED: LIM domain only protein 3-like [Nomascus leucogenys]
gi|332838720|ref|XP_003313574.1| PREDICTED: uncharacterized protein LOC465319 [Pan troglodytes]
gi|332838724|ref|XP_003313575.1| PREDICTED: uncharacterized protein LOC465319 [Pan troglodytes]
gi|332838726|ref|XP_003313576.1| PREDICTED: uncharacterized protein LOC465319 [Pan troglodytes]
gi|332838728|ref|XP_003313577.1| PREDICTED: uncharacterized protein LOC465319 [Pan troglodytes]
gi|332838732|ref|XP_003313579.1| PREDICTED: uncharacterized protein LOC465319 [Pan troglodytes]
gi|332838734|ref|XP_003339274.1| PREDICTED: uncharacterized protein LOC465319 [Pan troglodytes]
gi|332838736|ref|XP_003313580.1| PREDICTED: uncharacterized protein LOC465319 [Pan troglodytes]
gi|334348292|ref|XP_001366731.2| PREDICTED: LIM domain only protein 3-like [Monodelphis domestica]
gi|354477495|ref|XP_003500955.1| PREDICTED: LIM domain only protein 3-like [Cricetulus griseus]
gi|392347749|ref|XP_003749911.1| PREDICTED: LIM domain only protein 3-like [Rattus norvegicus]
gi|402885348|ref|XP_003906123.1| PREDICTED: LIM domain only protein 3 [Papio anubis]
gi|410046363|ref|XP_003952174.1| PREDICTED: uncharacterized protein LOC465319 [Pan troglodytes]
gi|410046365|ref|XP_003952175.1| PREDICTED: uncharacterized protein LOC465319 [Pan troglodytes]
gi|410963924|ref|XP_003988508.1| PREDICTED: LIM domain only protein 3 isoform 2 [Felis catus]
gi|410963926|ref|XP_003988509.1| PREDICTED: LIM domain only protein 3 isoform 3 [Felis catus]
gi|426225412|ref|XP_004006860.1| PREDICTED: LIM domain only protein 3 [Ovis aries]
gi|426225416|ref|XP_004006862.1| PREDICTED: LIM domain only protein 3 [Ovis aries]
gi|426225418|ref|XP_004006863.1| PREDICTED: LIM domain only protein 3 [Ovis aries]
gi|426225420|ref|XP_004006864.1| PREDICTED: LIM domain only protein 3 [Ovis aries]
gi|426371866|ref|XP_004052861.1| PREDICTED: LIM domain only protein 3-like [Gorilla gorilla gorilla]
gi|426371868|ref|XP_004052862.1| PREDICTED: LIM domain only protein 3-like [Gorilla gorilla gorilla]
gi|426371870|ref|XP_004052863.1| PREDICTED: LIM domain only protein 3-like [Gorilla gorilla gorilla]
gi|426371872|ref|XP_004052864.1| PREDICTED: LIM domain only protein 3-like [Gorilla gorilla gorilla]
gi|426371874|ref|XP_004052865.1| PREDICTED: LIM domain only protein 3-like [Gorilla gorilla gorilla]
gi|426371878|ref|XP_004052867.1| PREDICTED: LIM domain only protein 3-like [Gorilla gorilla gorilla]
gi|426371880|ref|XP_004052868.1| PREDICTED: LIM domain only protein 3-like [Gorilla gorilla gorilla]
gi|426371882|ref|XP_004052869.1| PREDICTED: LIM domain only protein 3-like [Gorilla gorilla gorilla]
gi|426371884|ref|XP_004052870.1| PREDICTED: LIM domain only protein 3-like [Gorilla gorilla gorilla]
gi|441669886|ref|XP_004092147.1| PREDICTED: LIM domain only protein 3-like [Nomascus leucogenys]
gi|441669892|ref|XP_004092148.1| PREDICTED: LIM domain only protein 3-like [Nomascus leucogenys]
gi|449482200|ref|XP_004174330.1| PREDICTED: LIM domain only protein 3 [Taeniopygia guttata]
gi|34098514|sp|Q8BZL8.1|LMO3_MOUSE RecName: Full=LIM domain only protein 3; Short=LMO-3; AltName:
Full=Neuronal-specific transcription factor DAT1
gi|34098603|sp|Q8TAP4.1|LMO3_HUMAN RecName: Full=LIM domain only protein 3; Short=LMO-3; AltName:
Full=Neuronal-specific transcription factor DAT1;
AltName: Full=Rhombotin-3
gi|75070808|sp|Q5RBW7.1|LMO3_PONAB RecName: Full=LIM domain only protein 3; Short=LMO-3
gi|108860786|sp|Q2KIA3.1|LMO3_BOVIN RecName: Full=LIM domain only protein 3; Short=LMO-3
gi|20070930|gb|AAH26311.1| LIM domain only 3 (rhombotin-like 2) [Homo sapiens]
gi|26329757|dbj|BAC28617.1| unnamed protein product [Mus musculus]
gi|34784567|gb|AAH57086.1| Lmo3 protein [Mus musculus]
gi|55727608|emb|CAH90559.1| hypothetical protein [Pongo abelii]
gi|55727981|emb|CAH90743.1| hypothetical protein [Pongo abelii]
gi|55730077|emb|CAH91763.1| hypothetical protein [Pongo abelii]
gi|55730911|emb|CAH92174.1| hypothetical protein [Pongo abelii]
gi|55733334|emb|CAH93349.1| hypothetical protein [Pongo abelii]
gi|55733457|emb|CAH93407.1| hypothetical protein [Pongo abelii]
gi|62148932|dbj|BAD93350.1| hypothetical protein [Homo sapiens]
gi|71052099|gb|AAH50085.1| LMO3 protein [Homo sapiens]
gi|86438236|gb|AAI12713.1| LIM domain only 3 (rhombotin-like 2) [Bos taurus]
gi|119616777|gb|EAW96371.1| LIM domain only 3 (rhombotin-like 2), isoform CRA_b [Homo sapiens]
gi|119616778|gb|EAW96372.1| LIM domain only 3 (rhombotin-like 2), isoform CRA_b [Homo sapiens]
gi|119616781|gb|EAW96375.1| LIM domain only 3 (rhombotin-like 2), isoform CRA_b [Homo sapiens]
gi|119616782|gb|EAW96376.1| LIM domain only 3 (rhombotin-like 2), isoform CRA_b [Homo sapiens]
gi|119616783|gb|EAW96377.1| LIM domain only 3 (rhombotin-like 2), isoform CRA_b [Homo sapiens]
gi|160858220|dbj|BAF93843.1| LIM domain only 3 [Sus scrofa]
gi|167773937|gb|ABZ92403.1| LIM domain only 3 (rhombotin-like 2) [synthetic construct]
gi|168279025|dbj|BAG11392.1| LIM domain only protein 3 [synthetic construct]
gi|296487271|tpg|DAA29384.1| TPA: LIM domain only protein 3 [Bos taurus]
gi|380783249|gb|AFE63500.1| LIM domain only protein 3 isoform 1 [Macaca mulatta]
gi|380783251|gb|AFE63501.1| LIM domain only protein 3 isoform 1 [Macaca mulatta]
Length = 145
Score = 206 bits (524), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 95/123 (77%), Positives = 109/123 (88%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRL
Sbjct: 11 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 70
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
FG TG CAAC+K+IPAFEMVMRAK+NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ D
Sbjct: 71 FGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 130
Query: 172 YEE 174
YEE
Sbjct: 131 YEE 133
Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 49 GGLKECASCGKRITE-RFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 107
G CA+C K I +++A D +H DC C C+ R VG + K N+ILC+ D
Sbjct: 72 GVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTD 130
Query: 108 YLRLFGTTGY 117
Y GY
Sbjct: 131 YEEGLMKEGY 140
>gi|338725822|ref|XP_003365206.1| PREDICTED: LOW QUALITY PROTEIN: LIM domain only protein 3-like
[Equus caballus]
Length = 168
Score = 206 bits (523), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 95/123 (77%), Positives = 109/123 (88%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRL
Sbjct: 34 KGCAGCTRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 93
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
FG TG CAAC+K+IPAFEMVMRAK+NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ D
Sbjct: 94 FGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 153
Query: 172 YEE 174
YEE
Sbjct: 154 YEE 156
Score = 40.4 bits (93), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 49 GGLKECASCGKRITE-RFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 107
G CA+C K I +++A D +H DC C C+ R VG + K N+ILC+ D
Sbjct: 95 GVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTD 153
Query: 108 YLRLFGTTGY 117
Y GY
Sbjct: 154 YEEGLMKEGY 163
>gi|50924940|gb|AAH79734.1| XLMO1 protein [Xenopus laevis]
Length = 145
Score = 206 bits (523), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 95/123 (77%), Positives = 108/123 (87%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRL
Sbjct: 11 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 70
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
FG TG CAAC+K+IPAFEMVMRAK NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ D
Sbjct: 71 FGVTGNCAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 130
Query: 172 YEE 174
YEE
Sbjct: 131 YEE 133
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 49 GGLKECASCGKRITE-RFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 107
G CA+C K I +++A + +H DC C C+ R VG + K N+ILC+ D
Sbjct: 72 GVTGNCAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTD 130
Query: 108 YLRLFGTTGYCA 119
Y GY A
Sbjct: 131 YEEGLMKEGYSA 142
>gi|156405705|ref|XP_001640872.1| predicted protein [Nematostella vectensis]
gi|156228008|gb|EDO48809.1| predicted protein [Nematostella vectensis]
Length = 155
Score = 205 bits (522), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 95/134 (70%), Positives = 110/134 (82%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
+ C CG I ERFLLKALD +WHEDCLKC CC+CRLGEVGSTLY KANLILCKRDYLRL
Sbjct: 18 RTCGGCGVLINERFLLKALDRYWHEDCLKCSCCECRLGEVGSTLYTKANLILCKRDYLRL 77
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
FGT G+C+ C K IPAFEMVMRA++NVYHLECF+CQ+CN RFCVGD+FYL +N+ILC D
Sbjct: 78 FGTRGFCSVCCKTIPAFEMVMRARDNVYHLECFSCQRCNQRFCVGDKFYLFNNRILCVDD 137
Query: 172 YEERQVFANIAYNP 185
YEE + N+ +
Sbjct: 138 YEEMMSYRNMDHGS 151
>gi|66472234|ref|NP_001018575.1| LIM domain only protein 3 [Danio rerio]
gi|82228853|sp|Q503U0.1|LMO3_DANRE RecName: Full=LIM domain only protein 3; Short=LMO-3
gi|63101819|gb|AAH95186.1| LIM domain only 3 [Danio rerio]
Length = 145
Score = 205 bits (522), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 95/123 (77%), Positives = 108/123 (87%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRL
Sbjct: 11 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 70
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
FG TG CAAC+K+IPAFEMVMRAK NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ D
Sbjct: 71 FGVTGNCAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 130
Query: 172 YEE 174
YEE
Sbjct: 131 YEE 133
Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 49 GGLKECASCGKRITE-RFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 107
G CA+C K I +++A + +H DC C C+ R VG + K N+ILC+ D
Sbjct: 72 GVTGNCAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTD 130
Query: 108 YLRLFGTTGY 117
Y GY
Sbjct: 131 YEEGLMKEGY 140
>gi|242020913|ref|XP_002430895.1| LIM-only protein, putative [Pediculus humanus corporis]
gi|212516106|gb|EEB18157.1| LIM-only protein, putative [Pediculus humanus corporis]
Length = 237
Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 97/158 (61%), Positives = 117/158 (74%), Gaps = 1/158 (0%)
Query: 18 FDSLRLATHYQVDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHED 77
+ L + +Y + +++ + G S ++ C C K I +R+LL +L WHED
Sbjct: 1 MNKLMKSNNYDNRNVVGMNYISEKTASSGKSS-MEMCQGCRKPIRDRYLLNSLGRNWHED 59
Query: 78 CLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNN 137
CLKC CC+ RLGEVG++LY +ANLILCKRDYLRLFG TGYC+AC K+IPAFEMVMRAK N
Sbjct: 60 CLKCTCCEARLGEVGASLYTRANLILCKRDYLRLFGNTGYCSACKKIIPAFEMVMRAKTN 119
Query: 138 VYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEER 175
VYHLECFACQ C +RFCVGDRFYLCDNKILCE DY ER
Sbjct: 120 VYHLECFACQLCGYRFCVGDRFYLCDNKILCESDYNER 157
>gi|21754884|dbj|BAC04582.1| unnamed protein product [Homo sapiens]
Length = 145
Score = 204 bits (518), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 94/123 (76%), Positives = 108/123 (87%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
K CA C ++I +R+LLKA D +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRL
Sbjct: 11 KGCAGCNRKIKDRYLLKAPDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 70
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
FG TG CAAC+K+IPAFEMVMRAK+NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ D
Sbjct: 71 FGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 130
Query: 172 YEE 174
YEE
Sbjct: 131 YEE 133
Score = 40.4 bits (93), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 49 GGLKECASCGKRITE-RFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 107
G CA+C K I +++A D +H DC C C+ R VG + K N+ILC+ D
Sbjct: 72 GVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTD 130
Query: 108 YLRLFGTTGY 117
Y GY
Sbjct: 131 YEEGLMKEGY 140
>gi|189065489|dbj|BAG35328.1| unnamed protein product [Homo sapiens]
Length = 145
Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 94/123 (76%), Positives = 108/123 (87%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRL
Sbjct: 11 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 70
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
FG TG CAAC+K+IPAFEMVMRAK+NVYHL+CFACQ CN R CVGD+F+L +N ILC+ D
Sbjct: 71 FGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRSCVGDKFFLKNNMILCQTD 130
Query: 172 YEE 174
YEE
Sbjct: 131 YEE 133
Score = 39.7 bits (91), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 49 GGLKECASCGKRITE-RFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 107
G CA+C K I +++A D +H DC C C+ R VG + K N+ILC+ D
Sbjct: 72 GVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQR-SCVGDKFFLKNNMILCQTD 130
Query: 108 YLRLFGTTGY 117
Y GY
Sbjct: 131 YEEGLMKEGY 140
>gi|410918403|ref|XP_003972675.1| PREDICTED: LIM domain only protein 3-like [Takifugu rubripes]
Length = 156
Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 93/123 (75%), Positives = 109/123 (88%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
K CA C ++I +R+LLKALD FWHEDCLKC CC+CRLGEVGSTLY KANLILC+RDYLRL
Sbjct: 22 KGCAGCNRKIKDRYLLKALDKFWHEDCLKCACCECRLGEVGSTLYTKANLILCRRDYLRL 81
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
FG TG CAAC+K+IPAFEMVMRAK+NVYHL+CFACQ C+ RFCVGD+F+L +N ILC+ D
Sbjct: 82 FGATGSCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCSQRFCVGDKFFLKNNLILCQTD 141
Query: 172 YEE 174
YE+
Sbjct: 142 YED 144
>gi|47220587|emb|CAG05613.1| unnamed protein product [Tetraodon nigroviridis]
Length = 317
Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 89/120 (74%), Positives = 103/120 (85%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C +I +RF+L+ALD +WHEDCLKC CCDCRLG VGSTLY +ANLILC+RDYLRLFG
Sbjct: 16 CAGCNGKIRDRFMLQALDRYWHEDCLKCACCDCRLGRVGSTLYTRANLILCRRDYLRLFG 75
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
TG CAAC K+IPAFEMVMRA++NVYHL+CFACQ C RFCVGDRF+L +N ILC+ DYE
Sbjct: 76 VTGNCAACGKMIPAFEMVMRARDNVYHLDCFACQLCRQRFCVGDRFFLKNNMILCQLDYE 135
>gi|47217221|emb|CAF96744.1| unnamed protein product [Tetraodon nigroviridis]
Length = 157
Score = 199 bits (507), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 91/123 (73%), Positives = 108/123 (87%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
K CA C ++I +R+LLKALD FWHEDCLKC CC+CRLGEVGSTLY KANLILC+RDYLRL
Sbjct: 23 KGCAGCNRKIKDRYLLKALDKFWHEDCLKCACCECRLGEVGSTLYTKANLILCRRDYLRL 82
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
FG TG CA C+K+IPAFEMVMRA++NVYHL+CFACQ C+ RFCVGD+F+L +N ILC+ D
Sbjct: 83 FGATGNCAVCSKLIPAFEMVMRARDNVYHLDCFACQLCSQRFCVGDKFFLKNNLILCQTD 142
Query: 172 YEE 174
YE+
Sbjct: 143 YED 145
>gi|312379336|gb|EFR25645.1| hypothetical protein AND_08835 [Anopheles darlingi]
Length = 233
Score = 199 bits (506), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 94/113 (83%), Positives = 99/113 (87%)
Query: 36 SSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTL 95
SS++ A+G K+CA CGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTL
Sbjct: 108 SSISSTPNLVAATGLAKDCAGCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTL 167
Query: 96 YQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 148
Y KANLILCKRDYLRLFGTTGYCAAC KVIPAFEMVMRAKNNVYHLECFA +
Sbjct: 168 YTKANLILCKRDYLRLFGTTGYCAACNKVIPAFEMVMRAKNNVYHLECFASRN 220
>gi|391348069|ref|XP_003748274.1| PREDICTED: rhombotin-1-like [Metaseiulus occidentalis]
Length = 215
Score = 198 bits (504), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 91/119 (76%), Positives = 102/119 (85%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C I +R+LL ALD WHEDCLKCG CDCRLGEVGSTLY K NLILC+RDYLR++G
Sbjct: 88 CAGCQNSIKDRYLLCALDKMWHEDCLKCGSCDCRLGEVGSTLYFKNNLILCRRDYLRIYG 147
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
T G C+AC K IP+FEMVMRA++NVYHLECFACQQCNHRFCVGDRFYL +N+ILCE DY
Sbjct: 148 TAGLCSACHKTIPSFEMVMRARSNVYHLECFACQQCNHRFCVGDRFYLHNNRILCEDDY 206
>gi|47230457|emb|CAF99650.1| unnamed protein product [Tetraodon nigroviridis]
Length = 169
Score = 198 bits (504), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 98/156 (62%), Positives = 115/156 (73%), Gaps = 21/156 (13%)
Query: 43 LAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLI 102
L+ G K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLI
Sbjct: 5 LSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLI 64
Query: 103 LCKRDYLR---------------------LFGTTGYCAACTKVIPAFEMVMRAKNNVYHL 141
LC+RDYLR LFGTTG CAAC+K+IPAFEMVMRA++NVYHL
Sbjct: 65 LCRRDYLRQERHTLHRTPDKHKSWAYKFRLFGTTGNCAACSKLIPAFEMVMRARDNVYHL 124
Query: 142 ECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQV 177
+CFACQ CN RFCVGD+F+L +N ILC+ DYEE Q+
Sbjct: 125 DCFACQLCNQRFCVGDKFFLKNNMILCQMDYEEGQL 160
>gi|332024562|gb|EGI64760.1| Rhombotin-1 [Acromyrmex echinatior]
Length = 124
Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 96/123 (78%), Positives = 105/123 (85%), Gaps = 4/123 (3%)
Query: 31 LTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGE 90
+T D S G GA+ +ECA CGK ITER+LLKALD+FWHEDCLKCGCCDCRLGE
Sbjct: 1 MTMDGSKSEPGK--NGAT--QQECAGCGKAITERYLLKALDMFWHEDCLKCGCCDCRLGE 56
Query: 91 VGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCN 150
VGSTLY KANLILCKRDYLRLFG TG+CAAC+KVIPAFEMVMRA+ NVYHLECFACQQCN
Sbjct: 57 VGSTLYTKANLILCKRDYLRLFGNTGHCAACSKVIPAFEMVMRARTNVYHLECFACQQCN 116
Query: 151 HRF 153
HR+
Sbjct: 117 HRY 119
>gi|432860305|ref|XP_004069493.1| PREDICTED: rhombotin-1-like [Oryzias latipes]
Length = 155
Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 89/135 (65%), Positives = 109/135 (80%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
+ CA C +I +RF+L+ALD FWHEDCLKC CCDCRLG VGSTLY ++NLILC+RDYLRL
Sbjct: 21 RGCAGCNGKILDRFMLQALDRFWHEDCLKCACCDCRLGRVGSTLYTRSNLILCRRDYLRL 80
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
FG TG CAAC+K+IPAFEMVMRA++NVYHL+CFACQ C RFCVGD+F+L +N ILC+ D
Sbjct: 81 FGVTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCRQRFCVGDKFFLKNNMILCQLD 140
Query: 172 YEERQVFANIAYNPS 186
YE+ + + P
Sbjct: 141 YEKGHLNGSSERQPQ 155
>gi|348535893|ref|XP_003455432.1| PREDICTED: rhombotin-1-like [Oreochromis niloticus]
Length = 155
Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 89/135 (65%), Positives = 108/135 (80%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
+ CA C +I +RF+L+ALD +WHEDCLKC CCDCRLG VGSTLY +ANLILC+RDYLRL
Sbjct: 21 RGCAGCNGKIRDRFMLQALDRYWHEDCLKCACCDCRLGRVGSTLYTRANLILCRRDYLRL 80
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
FG TG CAAC+K+IPAFEMVMRA++NVYHL+CFACQ C RFCVGD+F+L +N ILC+ D
Sbjct: 81 FGVTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCRQRFCVGDKFFLKNNMILCQLD 140
Query: 172 YEERQVFANIAYNPS 186
YE + + P
Sbjct: 141 YEGGHLNGSTERQPQ 155
>gi|307170935|gb|EFN63035.1| Rhombotin-1 [Camponotus floridanus]
Length = 118
Score = 196 bits (497), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 95/122 (77%), Positives = 104/122 (85%), Gaps = 4/122 (3%)
Query: 31 LTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGE 90
+T D S G GA+ +ECA CGK ITER+LLKALD++WHEDCLKCGCCDCRLGE
Sbjct: 1 MTMDGSKSESGK--NGAT--QQECAGCGKAITERYLLKALDMYWHEDCLKCGCCDCRLGE 56
Query: 91 VGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCN 150
VGSTLY KANLILCKRDYLRLFG TG+CAAC+KVIPAFEMVMRA+ NVYHLECFACQQCN
Sbjct: 57 VGSTLYTKANLILCKRDYLRLFGNTGHCAACSKVIPAFEMVMRARTNVYHLECFACQQCN 116
Query: 151 HR 152
HR
Sbjct: 117 HR 118
>gi|322796207|gb|EFZ18783.1| hypothetical protein SINV_11229 [Solenopsis invicta]
Length = 127
Score = 196 bits (497), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 95/122 (77%), Positives = 104/122 (85%), Gaps = 4/122 (3%)
Query: 31 LTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGE 90
+T D S G GA+ +ECA CGK ITER+LLKALD++WHEDCLKCGCCDCRLGE
Sbjct: 10 MTMDGSKSEPGK--NGAT--QQECAGCGKAITERYLLKALDMYWHEDCLKCGCCDCRLGE 65
Query: 91 VGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCN 150
VGSTLY KANLILCKRDYLRLFG TG+CAAC+KVIPAFEMVMRA+ NVYHLECFACQQCN
Sbjct: 66 VGSTLYTKANLILCKRDYLRLFGNTGHCAACSKVIPAFEMVMRARTNVYHLECFACQQCN 125
Query: 151 HR 152
HR
Sbjct: 126 HR 127
>gi|307206044|gb|EFN84137.1| Rhombotin-1 [Harpegnathos saltator]
Length = 118
Score = 195 bits (496), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 95/122 (77%), Positives = 104/122 (85%), Gaps = 4/122 (3%)
Query: 31 LTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGE 90
+T D S G GA+ +ECA CGK ITER+LLKALD++WHEDCLKCGCCDCRLGE
Sbjct: 1 MTMDGSKSEPGK--NGAT--QQECAGCGKAITERYLLKALDMYWHEDCLKCGCCDCRLGE 56
Query: 91 VGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCN 150
VGSTLY KANLILCKRDYLRLFG TG+CAAC+KVIPAFEMVMRA+ NVYHLECFACQQCN
Sbjct: 57 VGSTLYTKANLILCKRDYLRLFGNTGHCAACSKVIPAFEMVMRARTNVYHLECFACQQCN 116
Query: 151 HR 152
HR
Sbjct: 117 HR 118
>gi|195130787|ref|XP_002009832.1| GI15025 [Drosophila mojavensis]
gi|193908282|gb|EDW07149.1| GI15025 [Drosophila mojavensis]
Length = 667
Score = 189 bits (479), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 86/113 (76%), Positives = 95/113 (84%)
Query: 50 GLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYL 109
G + CA CGK I +R+LL+ALD+ WHEDCLKCGCCDCRLGEVGSTLY K NL+LCKRDYL
Sbjct: 165 GSQLCAGCGKHIQDRYLLRALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYL 224
Query: 110 RLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC 162
RLFG TGYCAAC+KVIPAFEMVMRA+ NVYHLECFACQQCNH + Y C
Sbjct: 225 RLFGNTGYCAACSKVIPAFEMVMRARTNVYHLECFACQQCNHSSYIYFYIYFC 277
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 36/44 (81%), Gaps = 4/44 (9%)
Query: 153 FCVGDRFYLCDNKILCEYDYEERQVFANIAYNPSSLAHLRRQVT 196
FCVGDRFYLC+NKILCEYDYEER VFA++A +P L+R V+
Sbjct: 535 FCVGDRFYLCENKILCEYDYEERLVFASMANHPM----LKRHVS 574
>gi|332024559|gb|EGI64757.1| Rhombotin-1 [Acromyrmex echinatior]
Length = 99
Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 86/99 (86%), Positives = 90/99 (90%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA CGK ITER+LLKALDL+WHEDCLKCGCCDCRLGEVGSTLY KANLILCKRDYLRLFG
Sbjct: 1 CAGCGKTITERYLLKALDLYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 60
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHR 152
TG CAAC K IPAFEMVMRA+ NVYHL+CFACQQC HR
Sbjct: 61 NTGCCAACNKQIPAFEMVMRARTNVYHLDCFACQQCTHR 99
>gi|402894308|ref|XP_003910308.1| PREDICTED: rhombotin-1 isoform 3 [Papio anubis]
Length = 137
Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/110 (74%), Positives = 94/110 (85%)
Query: 43 LAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLI 102
L+ G K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLI
Sbjct: 13 LSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLI 72
Query: 103 LCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHR 152
LC+RDYLRLFGTTG CAAC+K+IPAFEMVMRA++NVYHL+CFACQ CN R
Sbjct: 73 LCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQR 122
>gi|332835820|ref|XP_003312956.1| PREDICTED: rhombotin-1 isoform 3 [Pan troglodytes]
gi|397494624|ref|XP_003818174.1| PREDICTED: rhombotin-1 isoform 2 [Pan paniscus]
gi|426367363|ref|XP_004050702.1| PREDICTED: rhombotin-1 isoform 3 [Gorilla gorilla gorilla]
gi|64654569|gb|AAH96058.1| LMO1 protein [Homo sapiens]
Length = 137
Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/110 (74%), Positives = 94/110 (85%)
Query: 43 LAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLI 102
L+ G K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLI
Sbjct: 13 LSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLI 72
Query: 103 LCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHR 152
LC+RDYLRLFGTTG CAAC+K+IPAFEMVMRA++NVYHL+CFACQ CN R
Sbjct: 73 LCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQR 122
>gi|395743059|ref|XP_003777862.1| PREDICTED: rhombotin-1 isoform 2 [Pongo abelii]
Length = 137
Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/110 (74%), Positives = 94/110 (85%)
Query: 43 LAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLI 102
L+ G K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLI
Sbjct: 13 LSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLI 72
Query: 103 LCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHR 152
LC+RDYLRLFGTTG CAAC+K+IPAFEMVMRA++NVYHL+CFACQ CN R
Sbjct: 73 LCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQR 122
>gi|393902317|gb|EFO13539.2| hypothetical protein LOAG_14989 [Loa loa]
Length = 135
Score = 173 bits (438), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 79/117 (67%), Positives = 92/117 (78%)
Query: 79 LKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNV 138
+C CC CRLGE+GS LY K ++ILC RDYLRLFG TG CAAC K IPAFE+VMRAK+NV
Sbjct: 3 FQCACCLCRLGELGSKLYYKQSMILCARDYLRLFGLTGTCAACDKNIPAFELVMRAKDNV 62
Query: 139 YHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFANIAYNPSSLAHLRRQV 195
YHL CFACQ CN RFC+GD+FYLC+NKILC+YD+EER F AYN SL L + +
Sbjct: 63 YHLRCFACQVCNQRFCIGDKFYLCENKILCQYDFEERMTFHQAAYNNQSLTELTKNI 119
>gi|21706633|gb|AAH34128.1| Lmo3 protein, partial [Mus musculus]
Length = 112
Score = 169 bits (428), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 79/100 (79%), Positives = 88/100 (88%)
Query: 75 HEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRA 134
H LKC CCDCRLGEVGSTLY KANLILC+RDYLRLFG TG CAAC+K+IPAFEMVMRA
Sbjct: 1 HASGLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRA 60
Query: 135 KNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 174
K+NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE
Sbjct: 61 KDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEE 100
Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 49 GGLKECASCGKRITE-RFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 107
G CA+C K I +++A D +H DC C C+ R VG + K N+ILC+ D
Sbjct: 39 GVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTD 97
Query: 108 YLRLFGTTGY 117
Y GY
Sbjct: 98 YEEGLMKEGY 107
>gi|410908695|ref|XP_003967826.1| PREDICTED: rhombotin-1-like [Takifugu rubripes]
Length = 155
Score = 169 bits (428), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 88/122 (72%), Positives = 105/122 (86%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
+ CA C +I +RF+L+ALD +WHEDCLKC CCDC LG VGSTLY +ANLILC+RDYLRL
Sbjct: 21 RGCAGCNGKIRDRFMLQALDRYWHEDCLKCACCDCCLGRVGSTLYTRANLILCRRDYLRL 80
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
FG TG CAAC+K+IPAFEMVMRA++NVYHL+CFACQ C HRFCVGD+F+L +N ILC+ D
Sbjct: 81 FGVTGNCAACSKMIPAFEMVMRARDNVYHLDCFACQLCRHRFCVGDKFFLKNNMILCQLD 140
Query: 172 YE 173
YE
Sbjct: 141 YE 142
>gi|351710230|gb|EHB13149.1| LIM domain only protein 3 [Heterocephalus glaber]
Length = 163
Score = 169 bits (427), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 84/141 (59%), Positives = 101/141 (71%), Gaps = 18/141 (12%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLY-----QKANLILCKR 106
K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTL + L++ R
Sbjct: 11 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLLACMQTRIQQLVILPR 70
Query: 107 -------------DYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRF 153
+ LFG TG CAAC+K+IPAFEMVMRAK+NVYHL+CFACQ CN RF
Sbjct: 71 MLKLLVFGINQYTSFCLLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRF 130
Query: 154 CVGDRFYLCDNKILCEYDYEE 174
CVGD+F+L +N ILC+ DYEE
Sbjct: 131 CVGDKFFLKNNMILCQTDYEE 151
Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 31 LTTDASSVTQGALAGGASGGLKECASCGKRITE-RFLLKALDLFWHEDCLKCGCCDCRLG 89
L + T L G +G CA+C K I +++A D +H DC C C+ R
Sbjct: 75 LVFGINQYTSFCLLFGVTG---NCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC 131
Query: 90 EVGSTLYQKANLILCKRDYLRLFGTTGY 117
VG + K N+ILC+ DY GY
Sbjct: 132 -VGDKFFLKNNMILCQTDYEEGLMKEGY 158
>gi|322796266|gb|EFZ18842.1| hypothetical protein SINV_16506 [Solenopsis invicta]
Length = 89
Score = 166 bits (420), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 78/89 (87%), Positives = 82/89 (92%)
Query: 64 RFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTK 123
R+LLKALDL+WHEDCLKCGCCDCRLGEVGSTLY KANLILCKRDYLRLFG TG CAAC K
Sbjct: 1 RYLLKALDLYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGNTGCCAACNK 60
Query: 124 VIPAFEMVMRAKNNVYHLECFACQQCNHR 152
IPAFEMVMRA+ NVYHL+CFACQQC HR
Sbjct: 61 QIPAFEMVMRARTNVYHLDCFACQQCTHR 89
>gi|29469078|ref|NP_817093.1| LIM domain only 4a [Danio rerio]
gi|19879278|gb|AAK26166.1| LIM only 4 protein [Danio rerio]
gi|28277424|gb|AAH45835.1| LIM domain only 4 [Danio rerio]
gi|182890324|gb|AAI64026.1| Lmo4 protein [Danio rerio]
Length = 167
Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 73/143 (51%), Positives = 101/143 (70%), Gaps = 3/143 (2%)
Query: 29 VDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRL 88
V+ ++S+V A+ GG+ G ++ CA CG RI++RFLL ++D +WH CLKC CC +L
Sbjct: 2 VNSRVESSAV---AVTGGSGGAVRSCAGCGGRISDRFLLFSMDRYWHTRCLKCSCCQAQL 58
Query: 89 GEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 148
GE+GST + K +ILC+ DY+RLFG +G C+AC + IPA EMVMRA+ NVYHL+CF C
Sbjct: 59 GEIGSTCFSKGGMILCRNDYIRLFGHSGACSACGQSIPASEMVMRAQGNVYHLKCFTCAT 118
Query: 149 CNHRFCVGDRFYLCDNKILCEYD 171
C +R GDRF+ + I CE+D
Sbjct: 119 CRNRLVPGDRFHYVNGTIFCEHD 141
>gi|345783372|ref|XP_851277.2| PREDICTED: uncharacterized protein LOC609006 [Canis lupus
familiaris]
Length = 756
Score = 162 bits (410), Expect = 8e-38, Method: Composition-based stats.
Identities = 70/124 (56%), Positives = 83/124 (66%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L C C + I +R+ LKA+D +WHEDCL C C CRLGEVG LY K LC+RDYLR
Sbjct: 625 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 684
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
LFG G CA+C K I A+EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE
Sbjct: 685 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQ 744
Query: 171 DYEE 174
D E
Sbjct: 745 DIYE 748
>gi|351705454|gb|EHB08373.1| LIM domain transcription factor LMO4 [Heterocephalus glaber]
Length = 214
Score = 162 bits (409), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 82/204 (40%), Positives = 117/204 (57%), Gaps = 4/204 (1%)
Query: 1 MPTRRMW--YIDICDYRSYFDSLRLATHYQVDLTTDASSVTQGALAGGASGGLKECASCG 58
M R +W + C R F SL + Q + +SS AG S K CA CG
Sbjct: 1 MGLRALWPAIANFCVARFVFLSLSPSRPLQTMVNPGSSSQPPPVTAGSLS--WKRCAGCG 58
Query: 59 KRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYC 118
+I +RFLL A+D +WH CLKC CC +LG++G++ Y K+ +ILC+ DY+RLFG +G C
Sbjct: 59 GKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFGNSGAC 118
Query: 119 AACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVF 178
+AC + IPA E+VMRA+ NVYHL+CF C C +R GDRF+ + + CE+D +
Sbjct: 119 SACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTALIN 178
Query: 179 ANIAYNPSSLAHLRRQVTLQVLWI 202
++ S+ ++V Q L I
Sbjct: 179 GHLNSLQSNPLLPDQKVNTQQLLI 202
>gi|156375130|ref|XP_001629935.1| predicted protein [Nematostella vectensis]
gi|156216946|gb|EDO37872.1| predicted protein [Nematostella vectensis]
Length = 125
Score = 160 bits (405), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 75/121 (61%), Positives = 90/121 (74%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA CG I +FLL+ALD FWHE+CLKC C L E+G Y + +LILCKRDY+R+FG
Sbjct: 2 CAQCGNGIQSQFLLRALDQFWHEECLKCSYCCGMLSEMGPKFYFRGDLILCKRDYIRIFG 61
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
TTG C+ C K IP EMVMRA+ +VYHL+CFACQ C HRFCVGD+FYL N +LCE DY
Sbjct: 62 TTGICSFCFKTIPPLEMVMRARQHVYHLDCFACQVCRHRFCVGDKFYLHQNTVLCEDDYG 121
Query: 174 E 174
+
Sbjct: 122 D 122
>gi|410046368|ref|XP_003952176.1| PREDICTED: uncharacterized protein LOC465319 [Pan troglodytes]
Length = 167
Score = 159 bits (401), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 80/145 (55%), Positives = 99/145 (68%), Gaps = 22/145 (15%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGE----------------VGSTL 95
K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGE +G +
Sbjct: 11 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEHLKRCGSIYIHAAHTEIGICV 70
Query: 96 YQKANLILCKRDYLR------LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQC 149
++ L D+ + LFG TG CAAC+K+IPAFEMVMRAK+NVYHL+CFACQ C
Sbjct: 71 TLESPLPFVITDFSQQITIAWLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLC 130
Query: 150 NHRFCVGDRFYLCDNKILCEYDYEE 174
N RFCVGD+F+L +N ILC+ DYEE
Sbjct: 131 NQRFCVGDKFFLKNNMILCQTDYEE 155
Score = 42.7 bits (99), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 31 LTTDASSVTQGALAGGASGGLKECASCGKRITE-RFLLKALDLFWHEDCLKCGCCDCRLG 89
+ TD S A G +G CA+C K I +++A D +H DC C C+ R
Sbjct: 79 VITDFSQQITIAWLFGVTGN---CAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC 135
Query: 90 EVGSTLYQKANLILCKRDYLRLFGTTGY 117
VG + K N+ILC+ DY GY
Sbjct: 136 -VGDKFFLKNNMILCQTDYEEGLMKEGY 162
>gi|397491241|ref|XP_003816581.1| PREDICTED: LIM domain only protein 3-like [Pan paniscus]
Length = 167
Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 80/145 (55%), Positives = 99/145 (68%), Gaps = 22/145 (15%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGE----------------VGSTL 95
K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGE +G +
Sbjct: 11 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEHLKRCGSIYIHAAHTEIGICV 70
Query: 96 YQKANLILCKRDYLR------LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQC 149
++ L D+ + LFG TG CAAC+K+IPAFEMVMRAK+NVYHL+CFACQ C
Sbjct: 71 TLESPLPFVIIDFSQQITIAWLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLC 130
Query: 150 NHRFCVGDRFYLCDNKILCEYDYEE 174
N RFCVGD+F+L +N ILC+ DYEE
Sbjct: 131 NQRFCVGDKFFLKNNMILCQTDYEE 155
Score = 41.2 bits (95), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 31 LTTDASSVTQGALAGGASGGLKECASCGKRITE-RFLLKALDLFWHEDCLKCGCCDCRLG 89
+ D S A G +G CA+C K I +++A D +H DC C C+ R
Sbjct: 79 VIIDFSQQITIAWLFGVTGN---CAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC 135
Query: 90 EVGSTLYQKANLILCKRDYLRLFGTTGY 117
VG + K N+ILC+ DY GY
Sbjct: 136 -VGDKFFLKNNMILCQTDYEEGLMKEGY 162
>gi|426225424|ref|XP_004006866.1| PREDICTED: LIM domain only protein 3 [Ovis aries]
Length = 165
Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 80/143 (55%), Positives = 98/143 (68%), Gaps = 20/143 (13%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGE-----------------VGST 94
K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGE + +
Sbjct: 11 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEHLKRCRVRMHAAHTDVRIYTA 70
Query: 95 LYQKANLILC---KRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
L L++ + L LFG TG CAAC+K+IPAFEMVMRAK+NVYHL+CFACQ CN
Sbjct: 71 LECAPTLVIIDFYQITILWLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQ 130
Query: 152 RFCVGDRFYLCDNKILCEYDYEE 174
RFCVGD+F+L +N ILC+ DYEE
Sbjct: 131 RFCVGDKFFLKNNMILCQTDYEE 153
Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 49 GGLKECASCGKRITE-RFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 107
G CA+C K I +++A D +H DC C C+ R VG + K N+ILC+ D
Sbjct: 92 GVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTD 150
Query: 108 YLRLFGTTGY 117
Y GY
Sbjct: 151 YEEGLMKEGY 160
>gi|441669898|ref|XP_004092149.1| PREDICTED: LIM domain only protein 3-like [Nomascus leucogenys]
Length = 167
Score = 156 bits (395), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 80/145 (55%), Positives = 98/145 (67%), Gaps = 22/145 (15%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGE----------------VGSTL 95
K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGE +G +
Sbjct: 11 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEHLKRCGSIYIHAAHTEIGIYV 70
Query: 96 YQKANLILCKRDYLR------LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQC 149
+ L D+ + LFG TG CAAC+K+IPAFEMVMRAK+NVYHL+CFACQ C
Sbjct: 71 TLEWPLPFIIIDFSQQITIAWLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLC 130
Query: 150 NHRFCVGDRFYLCDNKILCEYDYEE 174
N RFCVGD+F+L +N ILC+ DYEE
Sbjct: 131 NQRFCVGDKFFLKNNMILCQTDYEE 155
Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 31 LTTDASSVTQGALAGGASGGLKECASCGKRITE-RFLLKALDLFWHEDCLKCGCCDCRLG 89
+ D S A G +G CA+C K I +++A D +H DC C C+ R
Sbjct: 79 IIIDFSQQITIAWLFGVTGN---CAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC 135
Query: 90 EVGSTLYQKANLILCKRDYLRLFGTTGY 117
VG + K N+ILC+ DY GY
Sbjct: 136 -VGDKFFLKNNMILCQTDYEEGLMKEGY 162
>gi|343790987|ref|NP_001230542.1| LIM domain only protein 3 isoform 4 [Homo sapiens]
gi|426371886|ref|XP_004052871.1| PREDICTED: LIM domain only protein 3-like [Gorilla gorilla gorilla]
gi|194378890|dbj|BAG57996.1| unnamed protein product [Homo sapiens]
Length = 167
Score = 156 bits (395), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 80/145 (55%), Positives = 98/145 (67%), Gaps = 22/145 (15%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGE----------------VGSTL 95
K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGE +G +
Sbjct: 11 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEHLKRCGSIYIHAAHTEIGICV 70
Query: 96 YQKANLILCKRDYLR------LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQC 149
+ L D+ + LFG TG CAAC+K+IPAFEMVMRAK+NVYHL+CFACQ C
Sbjct: 71 TLEWPLPFVIIDFSQQITIAWLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLC 130
Query: 150 NHRFCVGDRFYLCDNKILCEYDYEE 174
N RFCVGD+F+L +N ILC+ DYEE
Sbjct: 131 NQRFCVGDKFFLKNNMILCQTDYEE 155
Score = 41.2 bits (95), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 31 LTTDASSVTQGALAGGASGGLKECASCGKRITE-RFLLKALDLFWHEDCLKCGCCDCRLG 89
+ D S A G +G CA+C K I +++A D +H DC C C+ R
Sbjct: 79 VIIDFSQQITIAWLFGVTGN---CAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC 135
Query: 90 EVGSTLYQKANLILCKRDYLRLFGTTGY 117
VG + K N+ILC+ DY GY
Sbjct: 136 -VGDKFFLKNNMILCQTDYEEGLMKEGY 162
>gi|417396903|gb|JAA45485.1| Putative lim domain transcription factor lmo4 [Desmodus rotundus]
Length = 197
Score = 156 bits (394), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 68/140 (48%), Positives = 95/140 (67%), Gaps = 6/140 (4%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T VT G+L+ K CA CG +I +RFLL A+D +WH CLKC CC +LG++
Sbjct: 7 STQPPPVTAGSLS------WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 60
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
G++ Y K+ +ILC+ DY+RLFG +G C+AC + IPA E+VMRA+ NVYHL+CF C C +
Sbjct: 61 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 120
Query: 152 RFCVGDRFYLCDNKILCEYD 171
R GDRF+ + + CE+D
Sbjct: 121 RLVPGDRFHYINGSLFCEHD 140
>gi|334321736|ref|XP_001364235.2| PREDICTED: LIM domain transcription factor LMO4-like [Monodelphis
domestica]
Length = 225
Score = 156 bits (394), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 68/140 (48%), Positives = 95/140 (67%), Gaps = 6/140 (4%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
++ VT GAL+ K CA CG +I +RFLL A+D +WH CLKC CC +LG++
Sbjct: 7 SSQPPPVTAGALS------WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 60
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
G++ Y K+ +ILC+ DY+RLFG +G C+AC + IPA E+VMRA+ NVYHL+CF C C +
Sbjct: 61 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 120
Query: 152 RFCVGDRFYLCDNKILCEYD 171
R GDRF+ + + CE+D
Sbjct: 121 RLVPGDRFHYINGSLFCEHD 140
>gi|327270759|ref|XP_003220156.1| PREDICTED: LIM domain transcription factor LMO4-like [Anolis
carolinensis]
gi|387019075|gb|AFJ51655.1| LIM domain transcription factor LMO4-like [Crotalus adamanteus]
Length = 165
Score = 155 bits (392), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 68/140 (48%), Positives = 95/140 (67%), Gaps = 6/140 (4%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
++ VT G+L+ K CA CG +I +RFLL A+D +WH CLKC CC +LGE+
Sbjct: 7 SSQPPPVTSGSLS------WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGEI 60
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
G++ Y K+ +ILC+ DY+RLFG +G C+AC + IPA E+VMRA+ NVYHL+CF C C +
Sbjct: 61 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 120
Query: 152 RFCVGDRFYLCDNKILCEYD 171
R GDRF+ + + CE+D
Sbjct: 121 RLVPGDRFHYINGSLFCEHD 140
>gi|312105562|ref|XP_003150530.1| hypothetical protein LOAG_14989 [Loa loa]
Length = 98
Score = 155 bits (392), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 71/96 (73%), Positives = 82/96 (85%)
Query: 79 LKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNV 138
+C CC CRLGE+GS LY K ++ILC RDYLRLFG TG CAAC K IPAFE+VMRAK+NV
Sbjct: 3 FQCACCLCRLGELGSKLYYKQSMILCARDYLRLFGLTGTCAACDKNIPAFELVMRAKDNV 62
Query: 139 YHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 174
YHL CFACQ CN RFC+GD+FYLC+NKILC+YD+EE
Sbjct: 63 YHLRCFACQVCNQRFCIGDKFYLCENKILCQYDFEE 98
>gi|326670376|ref|XP_002663297.2| PREDICTED: LIM domain transcription factor LMO4.2 [Danio rerio]
Length = 195
Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 66/120 (55%), Positives = 89/120 (74%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
+ CA CG RI++RFLL +++ +WH CLKC CC +LGE+GST Y K+ +ILC+ DY+RL
Sbjct: 14 RSCAGCGGRISDRFLLFSMERYWHSRCLKCSCCQAQLGEIGSTCYSKSGMILCRTDYIRL 73
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
FG TG C+AC + IPA EMVMRA+ NVYHL+CF+C C ++ GDRF+ + I CE+D
Sbjct: 74 FGHTGACSACGQSIPASEMVMRAQGNVYHLKCFSCATCRNQLVPGDRFHYVNGTIFCEHD 133
>gi|49900550|gb|AAH76053.1| LIM domain only 4, like [Danio rerio]
Length = 165
Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 67/150 (44%), Positives = 95/150 (63%)
Query: 33 TDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVG 92
+ Q G S K CA CG +I +RFLL A+D +WH CLKC CC +LGE+G
Sbjct: 2 VNPGGSAQPPPVGAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGEIG 61
Query: 93 STLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHR 152
++ Y K+ +ILC+ DY+RLFG +G C+AC + IPA E+VMRA+ NVYHL+CF C C +R
Sbjct: 62 TSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNR 121
Query: 153 FCVGDRFYLCDNKILCEYDYEERQVFANIA 182
GDRF+ + + CE+D + +++
Sbjct: 122 LVPGDRFHYINGSLFCEHDRPTALINGHLS 151
>gi|431897053|gb|ELK06317.1| LIM domain transcription factor LMO4 [Pteropus alecto]
Length = 214
Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 95/140 (67%), Gaps = 6/140 (4%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
++ VT G+L+ K CA CG +I +RFLL A+D +WH CLKC CC +LG++
Sbjct: 7 SSQPPPVTAGSLS------WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 60
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
G++ Y K+ +ILC+ DY+RLFG +G C+AC + IPA E+VMRA+ NVYHL+CF C C +
Sbjct: 61 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 120
Query: 152 RFCVGDRFYLCDNKILCEYD 171
R GDRF+ + + CE+D
Sbjct: 121 RLVPGDRFHYINGSLFCEHD 140
>gi|348586684|ref|XP_003479098.1| PREDICTED: LIM domain transcription factor LMO4-like [Cavia
porcellus]
Length = 236
Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 95/140 (67%), Gaps = 6/140 (4%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
++ VT G+L+ K CA CG +I +RFLL A+D +WH CLKC CC +LG++
Sbjct: 7 SSQPPPVTAGSLS------WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 60
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
G++ Y K+ +ILC+ DY+RLFG +G C+AC + IPA E+VMRA+ NVYHL+CF C C +
Sbjct: 61 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 120
Query: 152 RFCVGDRFYLCDNKILCEYD 171
R GDRF+ + + CE+D
Sbjct: 121 RLVPGDRFHYINGSLFCEHD 140
>gi|432107070|gb|ELK32502.1| LIM domain transcription factor LMO4 [Myotis davidii]
Length = 198
Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 95/140 (67%), Gaps = 6/140 (4%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
++ VT G+L+ K CA CG +I +RFLL A+D +WH CLKC CC +LG++
Sbjct: 7 SSQPPPVTAGSLS------WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 60
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
G++ Y K+ +ILC+ DY+RLFG +G C+AC + IPA E+VMRA+ NVYHL+CF C C +
Sbjct: 61 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 120
Query: 152 RFCVGDRFYLCDNKILCEYD 171
R GDRF+ + + CE+D
Sbjct: 121 RLVPGDRFHYINGSLFCEHD 140
>gi|410920794|ref|XP_003973868.1| PREDICTED: LIM domain transcription factor LMO4-like [Takifugu
rubripes]
Length = 271
Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 67/155 (43%), Positives = 97/155 (62%), Gaps = 3/155 (1%)
Query: 34 DASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGS 93
+ +Q G S K CA CG +I +RFLL ++ +WH CLKC CC +LGE+G+
Sbjct: 3 NPGGSSQPPAVGTGSLSWKRCAGCGGKIADRFLLYTMESYWHSRCLKCSCCQAQLGEIGT 62
Query: 94 TLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRF 153
+ Y K+ +ILC+ DY+RLFG +G C+AC + IPA E+VMRA+ NVYHL+CF C C +R
Sbjct: 63 SCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRL 122
Query: 154 CVGDRFYLCDNKILCEYDYEERQV---FANIAYNP 185
GDRF+ + + CE+D + +++ NP
Sbjct: 123 VPGDRFHYVNGSLFCEHDRPTALINGHLSSLQTNP 157
>gi|395530587|ref|XP_003767372.1| PREDICTED: LIM domain transcription factor LMO4 [Sarcophilus
harrisii]
Length = 165
Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 68/140 (48%), Positives = 95/140 (67%), Gaps = 6/140 (4%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
++ VT GAL+ K CA CG +I +RFLL A+D +WH CLKC CC +LG++
Sbjct: 7 SSQPPPVTAGALS------WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 60
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
G++ Y K+ +ILC+ DY+RLFG +G C+AC + IPA E+VMRA+ NVYHL+CF C C +
Sbjct: 61 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 120
Query: 152 RFCVGDRFYLCDNKILCEYD 171
R GDRF+ + + CE+D
Sbjct: 121 RLVPGDRFHYINGSLFCEHD 140
>gi|348513565|ref|XP_003444312.1| PREDICTED: LIM domain transcription factor LMO4-like [Oreochromis
niloticus]
Length = 176
Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 95/149 (63%)
Query: 34 DASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGS 93
+ +Q G S K CA CG +I +RFLL +D +WH CLKC CC +LGE+G+
Sbjct: 3 NPGGSSQPPPVGTGSLSWKRCAGCGGKIADRFLLYTMDSYWHSRCLKCSCCQAQLGEIGT 62
Query: 94 TLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRF 153
+ Y K+ +ILC+ DY+RLFG +G C+AC + IPA E+VMRA+ NVYHL+CF C C +R
Sbjct: 63 SCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRL 122
Query: 154 CVGDRFYLCDNKILCEYDYEERQVFANIA 182
GDRF+ + + CE+D + +++
Sbjct: 123 VPGDRFHYINGSLFCEHDRPTALINGHLS 151
>gi|284795255|ref|NP_001087890.2| LIM domain only 4, gene 1 [Xenopus laevis]
Length = 165
Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 66/139 (47%), Positives = 93/139 (66%)
Query: 33 TDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVG 92
+ S +Q ++ K CA CG +I +RFLL A+D +WH CLKC CC +LGE+G
Sbjct: 2 VNPGSSSQPPPVTASTLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGEIG 61
Query: 93 STLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHR 152
++ Y K+ +ILC+ DY+RLFG +G C+AC + IPA E+VMRA+ NVYHL+CF C C +R
Sbjct: 62 TSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNR 121
Query: 153 FCVGDRFYLCDNKILCEYD 171
GDRF+ + + CE+D
Sbjct: 122 LVPGDRFHYINGSLFCEHD 140
>gi|213514790|ref|NP_001133458.1| LIM domain transcription factor LMO4.1 [Salmo salar]
gi|209154084|gb|ACI33274.1| LIM domain transcription factor LMO4.1 [Salmo salar]
Length = 168
Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 73/143 (51%), Positives = 98/143 (68%), Gaps = 2/143 (1%)
Query: 29 VDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRL 88
V+ +AS+V GG++G + CA CG RI +RFLL +++ +WH CLKC CC +L
Sbjct: 2 VNSRVEASAVAVTGGGGGSAG--RSCAGCGGRIADRFLLFSMERYWHTRCLKCSCCHAQL 59
Query: 89 GEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 148
GE+G+T Y K +ILCK DY+RLFG +G C+AC + IPA EMVMRA+ NVYHL+CF C
Sbjct: 60 GEIGTTCYSKGGMILCKNDYIRLFGHSGACSACGQSIPASEMVMRAQGNVYHLKCFTCAT 119
Query: 149 CNHRFCVGDRFYLCDNKILCEYD 171
C +R GDRF+ + I CE+D
Sbjct: 120 CRNRLVPGDRFHYVNGTIFCEHD 142
>gi|355699533|gb|AES01159.1| LIM domain only 4 [Mustela putorius furo]
Length = 163
Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 95/140 (67%), Gaps = 6/140 (4%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
++ VT G+L+ K CA CG +I +RFLL A+D +WH CLKC CC +LG++
Sbjct: 6 SSQPPPVTAGSLS------WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 59
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
G++ Y K+ +ILC+ DY+RLFG +G C+AC + IPA E+VMRA+ NVYHL+CF C C +
Sbjct: 60 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 119
Query: 152 RFCVGDRFYLCDNKILCEYD 171
R GDRF+ + + CE+D
Sbjct: 120 RLVPGDRFHYINGSLFCEHD 139
>gi|348505324|ref|XP_003440211.1| PREDICTED: LIM domain transcription factor LMO4.1-like [Oreochromis
niloticus]
Length = 198
Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 71/143 (49%), Positives = 94/143 (65%), Gaps = 2/143 (1%)
Query: 29 VDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRL 88
V+ +A +V GG +G + CA CG RI +RFLL +++ +WH CLKC CC +L
Sbjct: 2 VNSRVEAPTVAVMGSGGGTAG--RSCAGCGGRIADRFLLFSMERYWHTRCLKCSCCHAQL 59
Query: 89 GEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 148
GE ST Y K +ILCK DY+RLFG +G C+AC + IPA EMVMRA+ +VYHL+CF C
Sbjct: 60 GEYSSTCYSKGGMILCKNDYIRLFGHSGACSACGQSIPASEMVMRAQGSVYHLKCFTCAT 119
Query: 149 CNHRFCVGDRFYLCDNKILCEYD 171
C +R GDRF+ + I CE+D
Sbjct: 120 CRNRLVPGDRFHYVNGTIFCEHD 142
>gi|158258593|dbj|BAF85267.1| unnamed protein product [Homo sapiens]
Length = 165
Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 95/140 (67%), Gaps = 6/140 (4%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
++ VT G+L+ K CA CG +I +RFLL A+D +WH CLKC CC +LG++
Sbjct: 7 SSQPPPVTAGSLS------WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 60
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
G++ Y K+ +ILC+ DY+RLFG +G C+AC + IPA E+VMRA+ NVYHL+CF C C +
Sbjct: 61 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 120
Query: 152 RFCVGDRFYLCDNKILCEYD 171
R GDRF+ + + CE+D
Sbjct: 121 RLVPGDRFHYINGSLFCEHD 140
>gi|123995901|gb|ABM85552.1| LIM domain only 4 [synthetic construct]
Length = 165
Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 95/140 (67%), Gaps = 6/140 (4%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
++ VT G+L+ K CA CG +I +RFLL A+D +WH CLKC CC +LG++
Sbjct: 7 SSQPPPVTAGSLS------WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 60
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
G++ Y K+ +ILC+ DY+RLFG +G C+AC + IPA E+VMRA+ NVYHL+CF C C +
Sbjct: 61 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 120
Query: 152 RFCVGDRFYLCDNKILCEYD 171
R GDRF+ + + CE+D
Sbjct: 121 RLVPGDRFHYINGSLFCEHD 140
>gi|355558146|gb|EHH14926.1| hypothetical protein EGK_00938, partial [Macaca mulatta]
gi|355745433|gb|EHH50058.1| hypothetical protein EGM_00823, partial [Macaca fascicularis]
Length = 165
Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 95/140 (67%), Gaps = 6/140 (4%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
++ VT G+L+ K CA CG +I +RFLL A+D +WH CLKC CC +LG++
Sbjct: 7 SSQPPPVTAGSLS------WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 60
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
G++ Y K+ +ILC+ DY+RLFG +G C+AC + IPA E+VMRA+ NVYHL+CF C C +
Sbjct: 61 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 120
Query: 152 RFCVGDRFYLCDNKILCEYD 171
R GDRF+ + + CE+D
Sbjct: 121 RLVPGDRFHYINGSLFCEHD 140
>gi|440912098|gb|ELR61697.1| LIM domain transcription factor LMO4, partial [Bos grunniens mutus]
Length = 165
Score = 154 bits (388), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 95/140 (67%), Gaps = 6/140 (4%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
++ VT G+L+ K CA CG +I +RFLL A+D +WH CLKC CC +LG++
Sbjct: 8 SSQPPPVTAGSLS------WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 61
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
G++ Y K+ +ILC+ DY+RLFG +G C+AC + IPA E+VMRA+ NVYHL+CF C C +
Sbjct: 62 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 121
Query: 152 RFCVGDRFYLCDNKILCEYD 171
R GDRF+ + + CE+D
Sbjct: 122 RLVPGDRFHYINGSLFCEHD 141
>gi|52345752|ref|NP_001004922.1| LIM domain transcription factor LMO4.2 [Xenopus (Silurana)
tropicalis]
gi|82183496|sp|Q6DJ06.1|LMO42_XENTR RecName: Full=LIM domain transcription factor LMO4.2; AltName:
Full=LIM domain only protein 4.2; Short=LMO-4.2
gi|49522594|gb|AAH75379.1| MGC89099 protein [Xenopus (Silurana) tropicalis]
gi|89268694|emb|CAJ82708.1| LIM domain only 4 [Xenopus (Silurana) tropicalis]
Length = 165
Score = 154 bits (388), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 66/139 (47%), Positives = 93/139 (66%)
Query: 33 TDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVG 92
+ S +Q ++ K CA CG +I +RFLL A+D +WH CLKC CC +LGE+G
Sbjct: 2 VNPGSSSQPPPVTASTLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGEIG 61
Query: 93 STLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHR 152
++ Y K+ +ILC+ DY+RLFG +G C+AC + IPA E+VMRA+ NVYHL+CF C C +R
Sbjct: 62 TSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNR 121
Query: 153 FCVGDRFYLCDNKILCEYD 171
GDRF+ + + CE+D
Sbjct: 122 LVPGDRFHYINGSLFCEHD 140
>gi|281338511|gb|EFB14095.1| hypothetical protein PANDA_006061 [Ailuropoda melanoleuca]
Length = 164
Score = 154 bits (388), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 95/140 (67%), Gaps = 6/140 (4%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
++ VT G+L+ K CA CG +I +RFLL A+D +WH CLKC CC +LG++
Sbjct: 7 SSQPPPVTAGSLS------WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 60
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
G++ Y K+ +ILC+ DY+RLFG +G C+AC + IPA E+VMRA+ NVYHL+CF C C +
Sbjct: 61 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 120
Query: 152 RFCVGDRFYLCDNKILCEYD 171
R GDRF+ + + CE+D
Sbjct: 121 RLVPGDRFHYINGSLFCEHD 140
>gi|47086665|ref|NP_997854.1| LIM domain transcription factor LMO4 [Danio rerio]
gi|22652064|gb|AAN03596.1|AF398515_1 LIM-only 4 [Danio rerio]
Length = 165
Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 67/150 (44%), Positives = 94/150 (62%)
Query: 33 TDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVG 92
+ Q G S K CA CG +I +RFLL A+D +WH CLKC CC +LGE+G
Sbjct: 2 VNPGGSAQPPPVGAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGEIG 61
Query: 93 STLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHR 152
+ Y K+ +ILC+ DY+RLFG +G C+AC + IPA E+VMRA+ NVYHL+CF C C +R
Sbjct: 62 TFCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNR 121
Query: 153 FCVGDRFYLCDNKILCEYDYEERQVFANIA 182
GDRF+ + + CE+D + +++
Sbjct: 122 LVPGDRFHYINGSLFCEHDRPTALINGHLS 151
>gi|345306388|ref|XP_001506631.2| PREDICTED: LIM domain transcription factor LMO4-like
[Ornithorhynchus anatinus]
Length = 175
Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 94/140 (67%), Gaps = 6/140 (4%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+ VT G+L+ K CA CG +I +RFLL A+D +WH CLKC CC +LG++
Sbjct: 7 SAQPPPVTAGSLS------WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 60
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
G++ Y K+ +ILC+ DY+RLFG +G C+AC + IPA E+VMRA+ NVYHL+CF C C +
Sbjct: 61 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 120
Query: 152 RFCVGDRFYLCDNKILCEYD 171
R GDRF+ + + CE+D
Sbjct: 121 RLVPGDRFHYINGSLFCEHD 140
>gi|5803072|ref|NP_006760.1| LIM domain transcription factor LMO4 [Homo sapiens]
gi|6754560|ref|NP_034853.1| LIM domain transcription factor LMO4 [Mus musculus]
gi|57527555|ref|NP_001009708.1| LIM domain transcription factor LMO4 [Rattus norvegicus]
gi|77736447|ref|NP_001029923.1| LIM domain transcription factor LMO4 [Bos taurus]
gi|162951803|ref|NP_001106156.1| LIM domain transcription factor LMO4 [Sus scrofa]
gi|239937456|ref|NP_001155241.1| LIM domain transcription factor LMO4 [Mus musculus]
gi|239937458|ref|NP_001155242.1| LIM domain transcription factor LMO4 [Mus musculus]
gi|383872290|ref|NP_001244770.1| LIM domain transcription factor LMO4 [Macaca mulatta]
gi|57088261|ref|XP_537086.1| PREDICTED: LIM domain transcription factor LMO4 isoform 1 [Canis
lupus familiaris]
gi|73959644|ref|XP_867313.1| PREDICTED: LIM domain transcription factor LMO4 isoform 6 [Canis
lupus familiaris]
gi|114557534|ref|XP_001144748.1| PREDICTED: LIM domain transcription factor LMO4 isoform 6 [Pan
troglodytes]
gi|114557536|ref|XP_001144677.1| PREDICTED: LIM domain transcription factor LMO4 isoform 5 [Pan
troglodytes]
gi|149709390|ref|XP_001495634.1| PREDICTED: LIM domain transcription factor LMO4-like [Equus
caballus]
gi|291398567|ref|XP_002715923.1| PREDICTED: LIM domain only 4 isoform 1 [Oryctolagus cuniculus]
gi|291398569|ref|XP_002715924.1| PREDICTED: LIM domain only 4 isoform 2 [Oryctolagus cuniculus]
gi|296208425|ref|XP_002751086.1| PREDICTED: LIM domain transcription factor LMO4-like isoform 1
[Callithrix jacchus]
gi|296208427|ref|XP_002751087.1| PREDICTED: LIM domain transcription factor LMO4-like isoform 2
[Callithrix jacchus]
gi|297664521|ref|XP_002810690.1| PREDICTED: LIM domain transcription factor LMO4 isoform 1 [Pongo
abelii]
gi|297664523|ref|XP_002810691.1| PREDICTED: LIM domain transcription factor LMO4 isoform 2 [Pongo
abelii]
gi|301764579|ref|XP_002917710.1| PREDICTED: LIM domain transcription factor LMO4-like [Ailuropoda
melanoleuca]
gi|332221831|ref|XP_003260067.1| PREDICTED: LIM domain transcription factor LMO4 isoform 1 [Nomascus
leucogenys]
gi|332221833|ref|XP_003260068.1| PREDICTED: LIM domain transcription factor LMO4 isoform 2 [Nomascus
leucogenys]
gi|344278752|ref|XP_003411156.1| PREDICTED: LIM domain transcription factor LMO4-like [Loxodonta
africana]
gi|345801722|ref|XP_003434840.1| PREDICTED: LIM domain transcription factor LMO4 [Canis lupus
familiaris]
gi|395821809|ref|XP_003784224.1| PREDICTED: LIM domain transcription factor LMO4 [Otolemur
garnettii]
gi|397467290|ref|XP_003805357.1| PREDICTED: LIM domain transcription factor LMO4 [Pan paniscus]
gi|402855150|ref|XP_003892201.1| PREDICTED: LIM domain transcription factor LMO4 [Papio anubis]
gi|403305527|ref|XP_003943313.1| PREDICTED: LIM domain transcription factor LMO4 isoform 1 [Saimiri
boliviensis boliviensis]
gi|403305529|ref|XP_003943314.1| PREDICTED: LIM domain transcription factor LMO4 isoform 2 [Saimiri
boliviensis boliviensis]
gi|410967649|ref|XP_003990330.1| PREDICTED: LIM domain transcription factor LMO4 isoform 1 [Felis
catus]
gi|410967651|ref|XP_003990331.1| PREDICTED: LIM domain transcription factor LMO4 isoform 2 [Felis
catus]
gi|410967653|ref|XP_003990332.1| PREDICTED: LIM domain transcription factor LMO4 isoform 3 [Felis
catus]
gi|426215916|ref|XP_004002215.1| PREDICTED: LIM domain transcription factor LMO4 isoform 1 [Ovis
aries]
gi|426215918|ref|XP_004002216.1| PREDICTED: LIM domain transcription factor LMO4 isoform 2 [Ovis
aries]
gi|426330255|ref|XP_004026136.1| PREDICTED: LIM domain transcription factor LMO4 isoform 1 [Gorilla
gorilla gorilla]
gi|426330257|ref|XP_004026137.1| PREDICTED: LIM domain transcription factor LMO4 isoform 2 [Gorilla
gorilla gorilla]
gi|48428992|sp|P61968.1|LMO4_HUMAN RecName: Full=LIM domain transcription factor LMO4; AltName:
Full=Breast tumor autoantigen; AltName: Full=LIM domain
only protein 4; Short=LMO-4
gi|48428993|sp|P61969.1|LMO4_MOUSE RecName: Full=LIM domain transcription factor LMO4; AltName:
Full=Breast tumor autoantigen; AltName: Full=LIM domain
only protein 4; Short=LMO-4
gi|119371422|sp|Q3SWZ8.1|LMO4_BOVIN RecName: Full=LIM domain transcription factor LMO4; AltName:
Full=LIM domain only protein 4; Short=LMO-4
gi|1914877|gb|AAB51073.1|AAB51073 breast tumor autoantigen [Homo sapiens]
gi|3702854|gb|AAC62958.1| LIM domain transcription factor LMO4 [Mus musculus]
gi|3983077|gb|AAC83789.1| LIM only 4 [Mus musculus]
gi|4063896|gb|AAC98510.1| nuclear LIM-only 4 protein [Mus musculus]
gi|13097522|gb|AAH03488.1| Lmo4 protein [Mus musculus]
gi|13097819|gb|AAH03600.1| LIM domain only 4 [Homo sapiens]
gi|17389229|gb|AAH17673.1| LIM domain only 4 [Homo sapiens]
gi|26348597|dbj|BAC37938.1| unnamed protein product [Mus musculus]
gi|37537228|gb|AAH10278.3| LIM domain only 4 [Mus musculus]
gi|41351121|gb|AAH65818.1| LMO4 protein [Homo sapiens]
gi|56388757|gb|AAH87700.1| LIM domain only 4 [Rattus norvegicus]
gi|72679867|gb|AAI00383.1| Lmo4 protein [Mus musculus]
gi|74198060|dbj|BAE35210.1| unnamed protein product [Mus musculus]
gi|74209791|dbj|BAE23609.1| unnamed protein product [Mus musculus]
gi|74356507|gb|AAI04583.1| LIM domain only 4 [Bos taurus]
gi|119593574|gb|EAW73168.1| LIM domain only 4, isoform CRA_a [Homo sapiens]
gi|119593575|gb|EAW73169.1| LIM domain only 4, isoform CRA_a [Homo sapiens]
gi|123981088|gb|ABM82373.1| LIM domain only 4 [synthetic construct]
gi|148680084|gb|EDL12031.1| LIM domain only 4, isoform CRA_a [Mus musculus]
gi|148680085|gb|EDL12032.1| LIM domain only 4, isoform CRA_a [Mus musculus]
gi|148680086|gb|EDL12033.1| LIM domain only 4, isoform CRA_a [Mus musculus]
gi|149026128|gb|EDL82371.1| LIM domain only 4, isoform CRA_a [Rattus norvegicus]
gi|149026129|gb|EDL82372.1| LIM domain only 4, isoform CRA_a [Rattus norvegicus]
gi|149026130|gb|EDL82373.1| LIM domain only 4, isoform CRA_a [Rattus norvegicus]
gi|160858222|dbj|BAF93844.1| LIM domain only 4 [Sus scrofa]
gi|168275774|dbj|BAG10607.1| LIM domain transcription factor LMO4 [synthetic construct]
gi|296489301|tpg|DAA31414.1| TPA: LIM domain transcription factor LMO4 [Bos taurus]
gi|380785535|gb|AFE64643.1| LIM domain transcription factor LMO4 [Macaca mulatta]
gi|383411513|gb|AFH28970.1| LIM domain transcription factor LMO4 [Macaca mulatta]
gi|384944322|gb|AFI35766.1| LIM domain transcription factor LMO4 [Macaca mulatta]
gi|410208742|gb|JAA01590.1| LIM domain only 4 [Pan troglodytes]
gi|410247022|gb|JAA11478.1| LIM domain only 4 [Pan troglodytes]
gi|410297806|gb|JAA27503.1| LIM domain only 4 [Pan troglodytes]
gi|410340611|gb|JAA39252.1| LIM domain only 4 [Pan troglodytes]
gi|410340613|gb|JAA39253.1| LIM domain only 4 [Pan troglodytes]
Length = 165
Score = 153 bits (387), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 95/140 (67%), Gaps = 6/140 (4%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
++ VT G+L+ K CA CG +I +RFLL A+D +WH CLKC CC +LG++
Sbjct: 7 SSQPPPVTAGSLS------WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 60
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
G++ Y K+ +ILC+ DY+RLFG +G C+AC + IPA E+VMRA+ NVYHL+CF C C +
Sbjct: 61 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 120
Query: 152 RFCVGDRFYLCDNKILCEYD 171
R GDRF+ + + CE+D
Sbjct: 121 RLVPGDRFHYINGSLFCEHD 140
>gi|443704461|gb|ELU01523.1| hypothetical protein CAPTEDRAFT_46615, partial [Capitella teleta]
Length = 122
Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 64/122 (52%), Positives = 91/122 (74%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
K+CA CG +I +RFLL A+D +WH CLKC CC +LGE+G++ + K+ +ILCKRDY+RL
Sbjct: 1 KQCAGCGGKIIDRFLLHAMDRYWHTGCLKCSCCQAQLGELGTSCFTKSGMILCKRDYIRL 60
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
FG+TG CAAC++ IPA E VM+A+ NVYH+ CF C C+ R GDR+ + + ++CE+D
Sbjct: 61 FGSTGTCAACSQAIPASEFVMKAQGNVYHVHCFTCVTCHSRLVPGDRYGIINGSLICEHD 120
Query: 172 YE 173
+
Sbjct: 121 FP 122
>gi|47210680|emb|CAF90424.1| unnamed protein product [Tetraodon nigroviridis]
Length = 166
Score = 153 bits (386), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 67/155 (43%), Positives = 97/155 (62%), Gaps = 3/155 (1%)
Query: 34 DASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGS 93
+ +Q G S K CA CG +I +RFLL ++ +WH CLKC CC +LGE+G+
Sbjct: 4 NPGGSSQPPAVGTGSLSWKRCAGCGGKIADRFLLYTMESYWHSRCLKCSCCQAQLGEIGT 63
Query: 94 TLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRF 153
+ Y K+ +ILC+ DY+RLFG +G C+AC + IPA E+VMRA+ NVYHL+CF C C +R
Sbjct: 64 SCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRL 123
Query: 154 CVGDRFYLCDNKILCEYDYEERQV---FANIAYNP 185
GDRF+ + + CE+D + +++ NP
Sbjct: 124 VPGDRFHYVNGSLFCEHDRPTALINGHLSSLQTNP 158
>gi|45383886|ref|NP_989443.1| LIM domain transcription factor LMO4 [Gallus gallus]
gi|22347822|gb|AAM95988.1| LIM domain only 4 protein [Gallus gallus]
Length = 165
Score = 152 bits (385), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 94/140 (67%), Gaps = 6/140 (4%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+ VT G+L+ K CA CG +I +RFLL A+D +WH CLKC CC +LG++
Sbjct: 7 SAQPPPVTAGSLS------WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 60
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
G++ Y K+ +ILC+ DY+RLFG +G C+AC + IPA E+VMRA+ NVYHL+CF C C +
Sbjct: 61 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 120
Query: 152 RFCVGDRFYLCDNKILCEYD 171
R GDRF+ + + CE+D
Sbjct: 121 RLVPGDRFHYINGSLFCEHD 140
>gi|348535208|ref|XP_003455093.1| PREDICTED: LIM domain transcription factor LMO4-B-like [Oreochromis
niloticus]
Length = 261
Score = 152 bits (385), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 64/126 (50%), Positives = 89/126 (70%)
Query: 46 GASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCK 105
G + CA CG +I +RFLL +++ +WH CLKC CC +LG++G+T Y K +ILC+
Sbjct: 8 GVPSDPRSCAGCGGKIADRFLLFSMERYWHTRCLKCSCCQAQLGDIGTTCYSKGGMILCR 67
Query: 106 RDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNK 165
DY+RLFG +G C+AC++ IPA EMVMRA+ NVYHL+CF+C C +R GDRF+ +
Sbjct: 68 SDYIRLFGHSGACSACSQSIPANEMVMRAQGNVYHLKCFSCATCRNRLMPGDRFHYINGT 127
Query: 166 ILCEYD 171
I CE+D
Sbjct: 128 IFCEHD 133
>gi|441646887|ref|XP_003254671.2| PREDICTED: uncharacterized protein LOC100595328 [Nomascus
leucogenys]
Length = 382
Score = 152 bits (384), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 69/121 (57%), Positives = 82/121 (67%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C C + I +R+ LKA+D +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG
Sbjct: 254 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 313
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
G CA+C K I A+EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE D
Sbjct: 314 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIY 373
Query: 174 E 174
E
Sbjct: 374 E 374
>gi|7963882|gb|AAF71368.1|AF258348_1 neuronal specific transcription factor DAT1 [Homo sapiens]
Length = 125
Score = 152 bits (384), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 74/123 (60%), Positives = 88/123 (71%), Gaps = 20/123 (16%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
K CA C ++I +R+LLKALD +WHEDC KC CCDCR + RL
Sbjct: 11 KGCAGCNRKIKDRYLLKALDKYWHEDCPKCACCDCR--------------------WERL 50
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
FG TG CAAC+K+IPAFEMVMRAK+NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ D
Sbjct: 51 FGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 110
Query: 172 YEE 174
YEE
Sbjct: 111 YEE 113
>gi|348556199|ref|XP_003463910.1| PREDICTED: hypothetical protein LOC100733380 [Cavia porcellus]
Length = 381
Score = 152 bits (384), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 69/121 (57%), Positives = 82/121 (67%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C C + I +R+ LKA+D +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG
Sbjct: 253 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 312
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
G CA+C K I A+EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE D
Sbjct: 313 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIY 372
Query: 174 E 174
E
Sbjct: 373 E 373
>gi|344280810|ref|XP_003412175.1| PREDICTED: hypothetical protein LOC100673779 [Loxodonta africana]
Length = 339
Score = 152 bits (383), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 83/124 (66%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L C C + I +R+ LKA+D +WHEDCL C C CRLGEVG LY K LC+RDYLR
Sbjct: 208 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 267
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
LFG G CA+C K I A+EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE
Sbjct: 268 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQ 327
Query: 171 DYEE 174
D E
Sbjct: 328 DIYE 331
>gi|311248009|ref|XP_003122931.1| PREDICTED: hypothetical protein LOC100512825 [Sus scrofa]
Length = 476
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 69/121 (57%), Positives = 82/121 (67%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C C + I +R+ LKA+D +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG
Sbjct: 348 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 407
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
G CA+C K I A+EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE D
Sbjct: 408 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIY 467
Query: 174 E 174
E
Sbjct: 468 E 468
>gi|62751505|ref|NP_001015822.1| LIM domain transcription factor LMO4.1 [Xenopus (Silurana)
tropicalis]
gi|82194932|sp|Q5FVB2.1|LMO41_XENTR RecName: Full=LIM domain transcription factor LMO4.1; AltName:
Full=LIM domain only protein 4.1; Short=LMO-4.1
gi|58475879|gb|AAH90104.1| LIM domain only 4 [Xenopus (Silurana) tropicalis]
Length = 167
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 64/123 (52%), Positives = 89/123 (72%)
Query: 49 GGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDY 108
G K CA CG +I +RFLL +++ +WH CLKC CC +LGE+G++ Y K+ +ILC+ DY
Sbjct: 19 GPPKACAGCGGKIADRFLLYSMERYWHTRCLKCSCCQAQLGEIGTSCYTKSGMILCRNDY 78
Query: 109 LRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILC 168
+RLFG++G C+AC + IPA EMVMRA+ +VYHL+CF C C +R GDRF+ + I C
Sbjct: 79 IRLFGSSGACSACGQSIPASEMVMRAQGSVYHLKCFTCATCRNRLVPGDRFHYVNGAIFC 138
Query: 169 EYD 171
E+D
Sbjct: 139 EHD 141
>gi|395816191|ref|XP_003781591.1| PREDICTED: uncharacterized protein LOC100957884 [Otolemur
garnettii]
Length = 361
Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 69/121 (57%), Positives = 82/121 (67%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C C + I +R+ LKA+D +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG
Sbjct: 233 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 292
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
G CA+C K I A+EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE D
Sbjct: 293 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIY 352
Query: 174 E 174
E
Sbjct: 353 E 353
>gi|426367960|ref|XP_004050987.1| PREDICTED: uncharacterized protein LOC101139857 [Gorilla gorilla
gorilla]
Length = 362
Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 69/121 (57%), Positives = 82/121 (67%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C C + I +R+ LKA+D +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG
Sbjct: 234 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 293
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
G CA+C K I A+EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE D
Sbjct: 294 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIY 353
Query: 174 E 174
E
Sbjct: 354 E 354
>gi|224057485|ref|XP_002195837.1| PREDICTED: LIM domain transcription factor LMO4 [Taeniopygia
guttata]
Length = 165
Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 66/140 (47%), Positives = 94/140 (67%), Gaps = 6/140 (4%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+ V+ G+L+ K CA CG +I +RFLL A+D +WH CLKC CC +LG++
Sbjct: 7 SAQPPPVSAGSLS------WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 60
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
G++ Y K+ +ILC+ DY+RLFG +G C+AC + IPA E+VMRA+ NVYHL+CF C C +
Sbjct: 61 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 120
Query: 152 RFCVGDRFYLCDNKILCEYD 171
R GDRF+ + + CE+D
Sbjct: 121 RLVPGDRFHYINGSLFCEHD 140
>gi|345305572|ref|XP_001507645.2| PREDICTED: hypothetical protein LOC100076235 [Ornithorhynchus
anatinus]
Length = 397
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 83/124 (66%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L C C + I +R+ LKA+D +WHEDCL C C CRLGEVG LY K LC+RDYLR
Sbjct: 266 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 325
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
LFG G CA+C K I A+EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE
Sbjct: 326 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAVCQKHFCVGDRYLLINSDIVCEQ 385
Query: 171 DYEE 174
D E
Sbjct: 386 DIYE 389
>gi|390345093|ref|XP_787486.3| PREDICTED: LIM domain transcription factor LMO4-B-like
[Strongylocentrotus purpuratus]
Length = 208
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 65/137 (47%), Positives = 96/137 (70%), Gaps = 2/137 (1%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA CG +I +RFLL A+D FWH CLKC CC+ +LG++G + + K +ILCK+DYLR+FG
Sbjct: 59 CAGCGGKIIDRFLLHAVDRFWHTGCLKCSCCNVQLGDIGHSCFSKGGMILCKKDYLRIFG 118
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
T+G C AC + IPA E+VMR +N VYHL+CFAC C+ + GDR+ + + I+CE D+
Sbjct: 119 TSGACTACGQQIPANELVMRTQNRVYHLKCFACSSCHIQLVPGDRYTVVNGSIVCENDHS 178
Query: 174 ERQVFANIAYNPSSLAH 190
+++ + A++ + H
Sbjct: 179 --KLYKSAAHHGMTPGH 193
>gi|225708480|gb|ACO10086.1| LIM domain transcription factor LMO4 [Osmerus mordax]
Length = 159
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/143 (47%), Positives = 96/143 (67%), Gaps = 2/143 (1%)
Query: 38 VTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQ 97
V A GGAS + CA CG +I +RFLL +++ +WH CLKC CC +LG++G++ Y
Sbjct: 2 VNSQAPCGGAS--PRSCAGCGGKIGDRFLLYSMERYWHTRCLKCSCCHAQLGDIGTSCYS 59
Query: 98 KANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGD 157
K +ILC+ DY+RLFG +G C+AC + IPA EMVMRA+ NVYHL+CF+C C +R GD
Sbjct: 60 KGGMILCRSDYIRLFGHSGACSACGQSIPANEMVMRAQGNVYHLKCFSCATCRNRLVPGD 119
Query: 158 RFYLCDNKILCEYDYEERQVFAN 180
RF+ + I CE+D + ++
Sbjct: 120 RFHYVNGTIFCEHDRPGSALLSS 142
>gi|410903283|ref|XP_003965123.1| PREDICTED: LIM domain transcription factor LMO4-B-like [Takifugu
rubripes]
Length = 233
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 67/141 (47%), Positives = 92/141 (65%), Gaps = 1/141 (0%)
Query: 42 ALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANL 101
++ GG SG + CA CG RIT+RFLL +++ +WH CL+C CC LGE + Y + +
Sbjct: 12 SVVGGCSGA-RSCAGCGGRITDRFLLFSMERYWHTRCLRCSCCHAELGEFSRSCYSRGGM 70
Query: 102 ILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYL 161
ILCK DY+RLFG TG C+AC + IP EMVMRA+ +VYHL+CF C C +R GDRF+
Sbjct: 71 ILCKDDYIRLFGHTGACSACGQTIPPSEMVMRAQGSVYHLKCFTCATCRNRLVPGDRFHY 130
Query: 162 CDNKILCEYDYEERQVFANIA 182
+ I CE+D+ ++ A
Sbjct: 131 INGSIFCEHDHPGPELHGGHA 151
>gi|148224772|ref|NP_001079179.1| LIM domain transcription factor LMO4-A [Xenopus laevis]
gi|82211818|sp|Q8AW92.1|LMO4A_XENLA RecName: Full=LIM domain transcription factor LMO4-A; AltName:
Full=LIM domain only protein 4-A; Short=LMO-4-A;
AltName: Full=Xlmo4
gi|26986407|emb|CAD54077.1| lmo4 protein [Xenopus laevis]
gi|83318438|gb|AAI08586.1| Lmo4-A protein [Xenopus laevis]
Length = 171
Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 67/138 (48%), Positives = 92/138 (66%), Gaps = 2/138 (1%)
Query: 34 DASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGS 93
+ S T + G+ K CA CG +I +RFLL ++D +WH CLKC CC +LGE+G+
Sbjct: 6 SSESTTTAVSSNGSP--PKACAGCGGKIGDRFLLYSMDRYWHTRCLKCSCCQAQLGEIGT 63
Query: 94 TLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRF 153
+ Y K+ +ILC+ DY+RLFG +G C AC + IPA EMVMRA+ +VYHL+CF C C +R
Sbjct: 64 SCYTKSGMILCRNDYIRLFGNSGACNACGQSIPASEMVMRAQGSVYHLKCFTCATCRNRL 123
Query: 154 CVGDRFYLCDNKILCEYD 171
GDRF+ + I CE+D
Sbjct: 124 VPGDRFHYVNGTIFCEHD 141
>gi|147900853|ref|NP_001079705.1| LIM domain transcription factor LMO4-B [Xenopus laevis]
gi|82210060|sp|Q801P0.1|LMO4B_XENLA RecName: Full=LIM domain transcription factor LMO4-B; AltName:
Full=LIM domain only protein 4-B; Short=LMO-4-B
gi|29126820|gb|AAH48020.1| Lmo4-b protein [Xenopus laevis]
Length = 171
Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 64/120 (53%), Positives = 86/120 (71%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
K CA CG +I +RFLL ++D +WH CLKC CC +LGE+G++ Y K+ +ILC+ DY+RL
Sbjct: 22 KACAGCGGKIADRFLLYSMDRYWHTRCLKCSCCQAQLGEIGTSCYTKSGMILCRNDYIRL 81
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
FG +G C AC + IPA EMVMRA+ +VYHL+CF C C +R GDRF+ + I CE+D
Sbjct: 82 FGNSGACNACGQSIPASEMVMRAQGSVYHLKCFTCATCRNRLVPGDRFHYVNGTIFCEHD 141
>gi|291240630|ref|XP_002740222.1| PREDICTED: LIM domain only 4-like [Saccoglossus kowalevskii]
Length = 180
Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 63/122 (51%), Positives = 88/122 (72%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
++ CA CG +I +RFLL ALD +WH CLKC CC +LGE+G + + K +ILCK+DYLR
Sbjct: 40 VRSCAGCGVKIMDRFLLHALDRYWHTGCLKCTCCGAQLGELGPSCFSKGGMILCKKDYLR 99
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
LFG +G C++C + IPA E+VMRA+ NVYH +CFAC C+++ GDRF + + + CE
Sbjct: 100 LFGNSGACSSCGQSIPASELVMRAQGNVYHQKCFACTSCHNQLVPGDRFLIVNGNLFCET 159
Query: 171 DY 172
D+
Sbjct: 160 DH 161
>gi|403255494|ref|XP_003920463.1| PREDICTED: rhombotin-2, partial [Saimiri boliviensis boliviensis]
Length = 227
Score = 149 bits (376), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 83/124 (66%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L C C + I +R+ LKA+D +WHEDCL C C CRLGEVG LY K LC+RDYLR
Sbjct: 96 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 155
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
LFG G CA+C K I A+EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE
Sbjct: 156 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQ 215
Query: 171 DYEE 174
D E
Sbjct: 216 DIYE 219
>gi|215272415|ref|NP_032531.2| rhombotin-2 isoform 1 [Mus musculus]
Length = 228
Score = 149 bits (376), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 83/124 (66%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L C C + I +R+ LKA+D +WHEDCL C C CRLGEVG LY K LC+RDYLR
Sbjct: 97 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 156
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
LFG G CA+C K I A+EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE
Sbjct: 157 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQ 216
Query: 171 DYEE 174
D E
Sbjct: 217 DIYE 220
>gi|215272418|ref|NP_001135807.1| rhombotin-2 isoform 2 [Mus musculus]
gi|348605100|ref|NP_001032435.2| rhombotin-2 isoform 1 [Rattus norvegicus]
Length = 220
Score = 149 bits (375), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 69/121 (57%), Positives = 82/121 (67%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C C + I +R+ LKA+D +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG
Sbjct: 92 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 151
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
G CA+C K I A+EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE D
Sbjct: 152 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIY 211
Query: 174 E 174
E
Sbjct: 212 E 212
>gi|321454866|gb|EFX66019.1| hypothetical protein DAPPUDRAFT_332621 [Daphnia pulex]
Length = 114
Score = 149 bits (375), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 72/99 (72%), Positives = 83/99 (83%), Gaps = 2/99 (2%)
Query: 100 NLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRF 159
+LILCKRDYLR+FGT+G CAAC K IPAFEMVMRAK+NVYHL+CFACQQC+ RFCVGDRF
Sbjct: 1 HLILCKRDYLRMFGTSGNCAACCKAIPAFEMVMRAKSNVYHLDCFACQQCHQRFCVGDRF 60
Query: 160 YLCDNKILCEYDYEERQVFAN--IAYNPSSLAHLRRQVT 196
YL DNKILCEYDYEER V A + N S H++R+V+
Sbjct: 61 YLNDNKILCEYDYEERLVVAASMPSNNNGSTQHIQRRVS 99
>gi|297688971|ref|XP_002821941.1| PREDICTED: rhombotin-2 [Pongo abelii]
Length = 227
Score = 149 bits (375), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 83/124 (66%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L C C + I +R+ LKA+D +WHEDCL C C CRLGEVG LY K LC+RDYLR
Sbjct: 96 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 155
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
LFG G CA+C K I A+EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE
Sbjct: 156 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQ 215
Query: 171 DYEE 174
D E
Sbjct: 216 DIYE 219
>gi|214832074|ref|NP_005565.2| rhombotin-2 isoform 1 [Homo sapiens]
gi|119588588|gb|EAW68182.1| LIM domain only 2 (rhombotin-like 1), isoform CRA_b [Homo sapiens]
Length = 227
Score = 149 bits (375), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 83/124 (66%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L C C + I +R+ LKA+D +WHEDCL C C CRLGEVG LY K LC+RDYLR
Sbjct: 96 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 155
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
LFG G CA+C K I A+EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE
Sbjct: 156 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQ 215
Query: 171 DYEE 174
D E
Sbjct: 216 DIYE 219
>gi|118137504|pdb|2DFY|X Chain X, Crystal Structure Of A Cyclized Protein Fusion Of Lmo4 Lim
Domains 1 And 2 With The Lim Interacting Domain Of Ldb1
gi|118137505|pdb|2DFY|C Chain C, Crystal Structure Of A Cyclized Protein Fusion Of Lmo4 Lim
Domains 1 And 2 With The Lim Interacting Domain Of Ldb1
Length = 195
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 62/120 (51%), Positives = 86/120 (71%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
K CA CG +I +RFLL A+D +WH CLKC C +LG++G++ Y K+ +ILC+ DY+RL
Sbjct: 4 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRL 63
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
FG +G C+AC + IPA E+VMRA+ NVYHL+CF C C +R GDRF+ + + CE+D
Sbjct: 64 FGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 123
>gi|388454755|ref|NP_001253136.1| rhombotin-2 [Macaca mulatta]
gi|387539650|gb|AFJ70452.1| rhombotin-2 isoform 1 [Macaca mulatta]
Length = 222
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 83/124 (66%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L C C + I +R+ LKA+D +WHEDCL C C CRLGEVG LY K LC+RDYLR
Sbjct: 91 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 150
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
LFG G CA+C K I A+EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE
Sbjct: 151 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQ 210
Query: 171 DYEE 174
D E
Sbjct: 211 DIYE 214
>gi|56553691|pdb|1RUT|X Chain X, Complex Of Lmo4 Lim Domains 1 And 2 With The Ldb1 Lid
Domain
Length = 188
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 62/120 (51%), Positives = 86/120 (71%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
K CA CG +I +RFLL A+D +WH CLKC C +LG++G++ Y K+ +ILC+ DY+RL
Sbjct: 6 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRL 65
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
FG +G C+AC + IPA E+VMRA+ NVYHL+CF C C +R GDRF+ + + CE+D
Sbjct: 66 FGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 125
>gi|410044983|ref|XP_001145605.2| PREDICTED: rhombotin-2 isoform 5 [Pan troglodytes]
Length = 226
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/121 (57%), Positives = 82/121 (67%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C C + I +R+ LKA+D +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG
Sbjct: 98 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 157
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
G CA+C K I A+EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE D
Sbjct: 158 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIY 217
Query: 174 E 174
E
Sbjct: 218 E 218
>gi|402893865|ref|XP_003910103.1| PREDICTED: rhombotin-2 [Papio anubis]
Length = 222
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 83/124 (66%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L C C + I +R+ LKA+D +WHEDCL C C CRLGEVG LY K LC+RDYLR
Sbjct: 91 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 150
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
LFG G CA+C K I A+EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE
Sbjct: 151 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQ 210
Query: 171 DYEE 174
D E
Sbjct: 211 DIYE 214
>gi|156373115|ref|XP_001629379.1| predicted protein [Nematostella vectensis]
gi|156216378|gb|EDO37316.1| predicted protein [Nematostella vectensis]
Length = 153
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 62/125 (49%), Positives = 89/125 (71%)
Query: 47 ASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKR 106
+ ++ CA CG++I +RFLL ALD +WH +CLKC CC+ RLGE+G++ Y K +ILCK
Sbjct: 12 VAASMRVCAGCGEKIIDRFLLLALDQYWHVNCLKCSCCEARLGEIGTSCYSKGGMILCKT 71
Query: 107 DYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKI 166
DY+RL+G +G CA C K+IPA E+VM+ VYHL CF C C+++ GDRF++ + ++
Sbjct: 72 DYVRLYGNSGACAVCAKLIPATELVMKVLGKVYHLHCFTCTTCHNQLVPGDRFHVVNGRL 131
Query: 167 LCEYD 171
CE D
Sbjct: 132 FCEND 136
>gi|351708418|gb|EHB11337.1| Rhombotin-2 [Heterocephalus glaber]
Length = 227
Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 83/124 (66%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L C C + I +R+ LKA+D +WHEDCL C C CRLGEVG LY K LC+RDYLR
Sbjct: 96 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 155
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
LFG G CA+C K I A+EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE
Sbjct: 156 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQ 215
Query: 171 DYEE 174
D E
Sbjct: 216 DIYE 219
>gi|58332172|ref|NP_001011238.1| rhombotin-2 [Xenopus (Silurana) tropicalis]
gi|82195676|sp|Q5M8V8.1|RBTN2_XENTR RecName: Full=Rhombotin-2; AltName: Full=LIM domain only protein 2;
Short=LMO-2
gi|56556544|gb|AAH87809.1| LIM domain only 2 (rhombotin-like 1) [Xenopus (Silurana)
tropicalis]
Length = 158
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/125 (56%), Positives = 83/125 (66%)
Query: 50 GLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYL 109
L C C + I +R+ LKA+D +WHEDCL C C CRLGEVG LY K LC+RDYL
Sbjct: 26 SLLTCGGCQQSIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYL 85
Query: 110 RLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCE 169
RLFG G CA+C K I AFEM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE
Sbjct: 86 RLFGQDGLCASCDKRIRAFEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCE 145
Query: 170 YDYEE 174
D E
Sbjct: 146 QDIYE 150
>gi|256088687|ref|XP_002580458.1| rhombotin [Schistosoma mansoni]
gi|350644447|emb|CCD60816.1| rhombotin, putative [Schistosoma mansoni]
Length = 287
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/150 (48%), Positives = 94/150 (62%), Gaps = 2/150 (1%)
Query: 44 AGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLIL 103
LK C+ C + I E L A +WHEDCL+C CCD RL E+ Y KA + L
Sbjct: 16 PNSIMSELKFCSKCKQCIKESHYLLADCQYWHEDCLRCICCDARLAELDKIFYIKARMSL 75
Query: 104 CKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD 163
C+RDYLRL+G TG C+ C K + ++E VM+ KN+VYHL CF CQ C RFC+GDRFYL +
Sbjct: 76 CRRDYLRLYGKTGECSICQKQVQSYEFVMKIKNSVYHLSCFCCQHCQMRFCIGDRFYLHE 135
Query: 164 NKILCEYDYEERQVFANIAYNPSSLAHLRR 193
N ILCE+DY E +F ++ +L H +
Sbjct: 136 NIILCEHDYME--LFPHLFTRDINLPHPEK 163
>gi|301764242|ref|XP_002917543.1| PREDICTED: rhombotin-2-like, partial [Ailuropoda melanoleuca]
Length = 184
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 83/124 (66%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L C C + I +R+ LKA+D +WHEDCL C C CRLGEVG LY K LC+RDYLR
Sbjct: 53 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 112
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
LFG G CA+C K I A+EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE
Sbjct: 113 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQ 172
Query: 171 DYEE 174
D E
Sbjct: 173 DIYE 176
>gi|326920334|ref|XP_003206429.1| PREDICTED: rhombotin-2-like [Meleagris gallopavo]
Length = 183
Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 83/124 (66%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L C C + I +R+ LKA+D +WHEDCL C C CRLGEVG LY K LC+RDYLR
Sbjct: 52 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 111
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
LFG G CA+C K I A+EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE
Sbjct: 112 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQ 171
Query: 171 DYEE 174
D E
Sbjct: 172 DIYE 175
>gi|45383592|ref|NP_989602.1| rhombotin-2 [Gallus gallus]
gi|214832121|ref|NP_001135787.1| rhombotin-2 isoform 2 [Homo sapiens]
gi|214832219|ref|NP_001135788.1| rhombotin-2 isoform 2 [Homo sapiens]
gi|132533|sp|P25791.1|RBTN2_HUMAN RecName: Full=Rhombotin-2; AltName: Full=Cysteine-rich protein
TTG-2; AltName: Full=LIM domain only protein 2;
Short=LMO-2; AltName: Full=T-cell translocation protein
2
gi|18656901|gb|AAL78036.1|AF468789_1 LIM domain-containing transcription factor [Gallus gallus]
gi|37481|emb|CAA43430.1| TTG-2a/RBTN-2a [Homo sapiens]
gi|21706499|gb|AAH34041.1| LMO2 protein [Homo sapiens]
gi|23272668|gb|AAH35607.1| LMO2 protein [Homo sapiens]
gi|27502791|gb|AAH42426.1| LMO2 protein [Homo sapiens]
gi|90085449|dbj|BAE91465.1| unnamed protein product [Macaca fascicularis]
gi|123983036|gb|ABM83259.1| LIM domain only 2 (rhombotin-like 1) [synthetic construct]
gi|123997725|gb|ABM86464.1| LIM domain only 2 (rhombotin-like 1) [synthetic construct]
gi|208966668|dbj|BAG73348.1| LIM domain only 2 [synthetic construct]
gi|380783195|gb|AFE63473.1| rhombotin-2 isoform 1 [Macaca mulatta]
gi|431915694|gb|ELK16027.1| Rhombotin-2 [Pteropus alecto]
Length = 158
Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 83/124 (66%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L C C + I +R+ LKA+D +WHEDCL C C CRLGEVG LY K LC+RDYLR
Sbjct: 27 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 86
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
LFG G CA+C K I A+EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE
Sbjct: 87 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQ 146
Query: 171 DYEE 174
D E
Sbjct: 147 DIYE 150
>gi|215272297|ref|NP_001135809.1| rhombotin-2 isoform 3 [Mus musculus]
gi|215272420|ref|NP_001135808.1| rhombotin-2 isoform 3 [Mus musculus]
gi|348605102|ref|NP_001231708.1| rhombotin-2 isoform 2 [Rattus norvegicus]
gi|348605104|ref|NP_001231709.1| rhombotin-2 isoform 2 [Rattus norvegicus]
gi|348605106|ref|NP_001231710.1| rhombotin-2 isoform 2 [Rattus norvegicus]
gi|132534|sp|P25801.1|RBTN2_MOUSE RecName: Full=Rhombotin-2; AltName: Full=Cysteine-rich protein
TTG-2; AltName: Full=LIM domain only protein 2;
Short=LMO-2; AltName: Full=T-cell translocation protein
2
gi|200749|gb|AAA40054.1| rhom-2 [Mus musculus]
gi|12850763|dbj|BAB28844.1| unnamed protein product [Mus musculus]
gi|34785560|gb|AAH57880.1| LIM domain only 2 [Mus musculus]
gi|76779330|gb|AAI05773.1| LIM domain only 2 [Rattus norvegicus]
gi|149022788|gb|EDL79682.1| LIM domain only 2 [Rattus norvegicus]
Length = 158
Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 83/124 (66%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L C C + I +R+ LKA+D +WHEDCL C C CRLGEVG LY K LC+RDYLR
Sbjct: 27 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 86
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
LFG G CA+C K I A+EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE
Sbjct: 87 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQ 146
Query: 171 DYEE 174
D E
Sbjct: 147 DIYE 150
>gi|224050494|ref|XP_002188677.1| PREDICTED: rhombotin-2 [Taeniopygia guttata]
Length = 158
Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 83/124 (66%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L C C + I +R+ LKA+D +WHEDCL C C CRLGEVG LY K LC+RDYLR
Sbjct: 27 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 86
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
LFG G CA+C K I A+EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE
Sbjct: 87 LFGQDGLCASCEKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQ 146
Query: 171 DYEE 174
D E
Sbjct: 147 DIYE 150
>gi|115496606|ref|NP_001069820.1| rhombotin-2 [Bos taurus]
gi|119361443|sp|Q1LZ94.1|RBTN2_BOVIN RecName: Full=Rhombotin-2; AltName: Full=LIM domain only protein 2;
Short=LMO-2
gi|94534785|gb|AAI16135.1| LIM domain only 2 (rhombotin-like 1) [Bos taurus]
gi|296479728|tpg|DAA21843.1| TPA: rhombotin-2 [Bos taurus]
Length = 158
Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 83/124 (66%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L C C + I +R+ LKA+D +WHEDCL C C CRLGEVG LY K LC+RDYLR
Sbjct: 27 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 86
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
LFG G CA+C K I A+EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE
Sbjct: 87 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQ 146
Query: 171 DYEE 174
D E
Sbjct: 147 DIYE 150
>gi|327280945|ref|XP_003225211.1| PREDICTED: rhombotin-2-like [Anolis carolinensis]
Length = 158
Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 83/124 (66%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L C C + I +R+ LKA+D +WHEDCL C C CRLGEVG LY K LC+RDYLR
Sbjct: 27 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 86
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
LFG G CA+C K I A+EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE
Sbjct: 87 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQ 146
Query: 171 DYEE 174
D E
Sbjct: 147 DIYE 150
>gi|432861309|ref|XP_004069604.1| PREDICTED: rhombotin-2-like [Oryzias latipes]
Length = 160
Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 72/140 (51%), Positives = 88/140 (62%), Gaps = 5/140 (3%)
Query: 50 GLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYL 109
L C C + I +RF LKA++ +WHEDCL C C CRLGEVG LY K LC+RDYL
Sbjct: 26 SLLTCGGCQQNIGDRFFLKAIEQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYL 85
Query: 110 RLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCE 169
RLFG G CA+C K I AFEM MR ++ VYHLECF C C FCVGDR+ L ++ I+CE
Sbjct: 86 RLFGQDGLCASCEKRIRAFEMTMRVRDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCE 145
Query: 170 YDYEERQVFANIAYNPSSLA 189
D +F N S++
Sbjct: 146 QD-----IFEWTKLNNSNMV 160
>gi|238231589|ref|NP_001153980.1| Rhombotin-2 [Oncorhynchus mykiss]
gi|225703168|gb|ACO07430.1| Rhombotin-2 [Oncorhynchus mykiss]
Length = 159
Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 70/127 (55%), Positives = 84/127 (66%)
Query: 48 SGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 107
+ L C C + I +RF LKA++ +WHEDCL C C CRLGEVG LY K LC+RD
Sbjct: 24 APSLLNCGGCQQSIGDRFFLKAIEKYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRD 83
Query: 108 YLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKIL 167
YLRLFG G CA+C K I AFEM MR ++ VYHLECF C C FCVGDR+ L ++ I+
Sbjct: 84 YLRLFGQDGLCASCEKRIRAFEMTMRVRDKVYHLECFKCAACQKHFCVGDRYLLINSDIV 143
Query: 168 CEYDYEE 174
CE D E
Sbjct: 144 CEQDIFE 150
>gi|432113866|gb|ELK35978.1| Rhombotin-2 [Myotis davidii]
Length = 156
Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 83/124 (66%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L C C + I +R+ LKA+D +WHEDCL C C CRLGEVG LY K LC+RDYLR
Sbjct: 25 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 84
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
LFG G CA+C K I A+EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE
Sbjct: 85 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQ 144
Query: 171 DYEE 174
D E
Sbjct: 145 DIYE 148
>gi|225707862|gb|ACO09777.1| Rhombotin-2 [Osmerus mordax]
Length = 159
Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 71/134 (52%), Positives = 89/134 (66%), Gaps = 1/134 (0%)
Query: 50 GLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYL 109
L C C + I +RF LKA++ +WHEDCL C C CRLGEVG LY K LC+RDYL
Sbjct: 26 ALLTCGGCQQSIGDRFFLKAIEQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYL 85
Query: 110 RLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCE 169
RLFG G CA+C K I AFEM MR ++ VYHLECF C C FCVGDR+ L ++ I+CE
Sbjct: 86 RLFGQDGLCASCEKRIRAFEMTMRVRDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCE 145
Query: 170 YD-YEERQVFANIA 182
D +E ++ +N+
Sbjct: 146 QDIFEWTKLNSNMV 159
>gi|328781883|ref|XP_396576.4| PREDICTED: hypothetical protein LOC413125, partial [Apis mellifera]
Length = 417
Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 62/132 (46%), Positives = 88/132 (66%), Gaps = 2/132 (1%)
Query: 45 GGASG--GLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLI 102
GG SG G+++CA CG +I ER+LL A+D +WH CLKC C L E+G + Y ++ +I
Sbjct: 182 GGPSGPTGIQQCAGCGGQIVERWLLLAMDRYWHNGCLKCSYCGAALAEIGHSCYTRSGMI 241
Query: 103 LCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC 162
LCK DY R+FG++G CA C IPA E+VMRA +V+H +CF C +C ++ GDR+YL
Sbjct: 242 LCKSDYRRMFGSSGACAGCGNAIPATELVMRAGGSVFHQKCFTCSKCGNQLVSGDRYYLL 301
Query: 163 DNKILCEYDYEE 174
+CE D+ +
Sbjct: 302 SGSPVCETDWHK 313
>gi|348512977|ref|XP_003444019.1| PREDICTED: rhombotin-2-like [Oreochromis niloticus]
Length = 160
Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 71/131 (54%), Positives = 84/131 (64%)
Query: 50 GLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYL 109
L C C + I +RF LKA++ +WHEDCL C C CRLGEVG LY K LC+RDYL
Sbjct: 26 SLLTCGGCQQSIGDRFFLKAIEQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYL 85
Query: 110 RLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCE 169
RLFG G CA+C K I AFEM MR ++ VYHLECF C C FCVGDR+ L ++ I+CE
Sbjct: 86 RLFGQDGLCASCEKRIRAFEMTMRVRDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCE 145
Query: 170 YDYEERQVFAN 180
D E N
Sbjct: 146 QDIFEWTKLNN 156
>gi|380029439|ref|XP_003698380.1| PREDICTED: uncharacterized protein LOC100872944 [Apis florea]
Length = 478
Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 62/132 (46%), Positives = 88/132 (66%), Gaps = 2/132 (1%)
Query: 45 GGASG--GLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLI 102
GG SG G+++CA CG +I ER+LL A+D +WH CLKC C L E+G + Y ++ +I
Sbjct: 244 GGPSGPTGIQQCAGCGGQIVERWLLLAMDRYWHNGCLKCSYCGAALAEIGHSCYTRSGMI 303
Query: 103 LCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC 162
LCK DY R+FG++G CA C IPA E+VMRA +V+H +CF C +C ++ GDR+YL
Sbjct: 304 LCKSDYRRMFGSSGACAGCGNAIPATELVMRAGGSVFHQKCFTCSKCGNQLVSGDRYYLL 363
Query: 163 DNKILCEYDYEE 174
+CE D+ +
Sbjct: 364 SGSPVCETDWHK 375
>gi|213514626|ref|NP_001133485.1| Rhombotin-2 [Salmo salar]
gi|209154196|gb|ACI33330.1| Rhombotin-2 [Salmo salar]
Length = 159
Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 70/125 (56%), Positives = 83/125 (66%)
Query: 50 GLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYL 109
L C C + I +RF LKA++ +WHEDCL C C CRLGEVG LY K LC+RDYL
Sbjct: 26 SLLNCGGCQQSIGDRFFLKAIEKYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYL 85
Query: 110 RLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCE 169
RLFG G CA+C K I AFEM MR ++ VYHLECF C C FCVGDR+ L ++ I+CE
Sbjct: 86 RLFGQDGLCASCEKRIRAFEMTMRVRDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCE 145
Query: 170 YDYEE 174
D E
Sbjct: 146 QDIFE 150
>gi|18858983|ref|NP_571186.1| rhombotin-2 [Danio rerio]
gi|82223263|sp|Q9PTJ3.1|RBTN2_DANRE RecName: Full=Rhombotin-2; AltName: Full=LIM domain only protein 2;
Short=LMO-2; Short=zlmo2
gi|6049849|gb|AAF02779.1| LMO2 protein [Danio rerio]
Length = 159
Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 83/124 (66%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L C C + I +RF LKA++ +WHEDCL C C CRLGEVG LY K LC+RDYLR
Sbjct: 27 LLTCGGCQQSIGDRFFLKAIEQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 86
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
LFG G CA+C K I AFEM MR ++ VYHLECF C C FCVGDR+ L ++ I+CE
Sbjct: 87 LFGQDGLCASCEKRIRAFEMTMRVRDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQ 146
Query: 171 DYEE 174
D E
Sbjct: 147 DIFE 150
>gi|148695762|gb|EDL27709.1| LIM domain only 2 [Mus musculus]
Length = 155
Score = 146 bits (369), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 83/124 (66%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L C C + I +R+ LKA+D +WHEDCL C C CRLGEVG LY K LC+RDYLR
Sbjct: 24 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 83
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
LFG G CA+C K I A+EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE
Sbjct: 84 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQ 143
Query: 171 DYEE 174
D E
Sbjct: 144 DIYE 147
>gi|426245282|ref|XP_004016442.1| PREDICTED: rhombotin-2 [Ovis aries]
Length = 151
Score = 146 bits (369), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 83/124 (66%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L C C + I +R+ LKA+D +WHEDCL C C CRLGEVG LY K LC+RDYLR
Sbjct: 20 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 79
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
LFG G CA+C K I A+EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE
Sbjct: 80 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQ 139
Query: 171 DYEE 174
D E
Sbjct: 140 DIYE 143
>gi|410908487|ref|XP_003967722.1| PREDICTED: rhombotin-2-like [Takifugu rubripes]
Length = 160
Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 70/125 (56%), Positives = 83/125 (66%)
Query: 50 GLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYL 109
L C C + I +RF LKA++ +WHEDCL C C CRLGEVG LY K LC+RDYL
Sbjct: 26 SLLTCGGCQQSIGDRFFLKAIEQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYL 85
Query: 110 RLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCE 169
RLFG G CA+C K I AFEM MR ++ VYHLECF C C FCVGDR+ L ++ I+CE
Sbjct: 86 RLFGQDGLCASCEKRIRAFEMTMRVRDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCE 145
Query: 170 YDYEE 174
D E
Sbjct: 146 QDIFE 150
>gi|194217809|ref|XP_001492641.2| PREDICTED: rhombotin-2-like [Equus caballus]
gi|397520671|ref|XP_003830436.1| PREDICTED: rhombotin-2 [Pan paniscus]
gi|410973530|ref|XP_003993202.1| PREDICTED: rhombotin-2 [Felis catus]
gi|9799068|gb|AAF98804.1| LMO2b splice variant [Homo sapiens]
gi|49256403|gb|AAH73973.1| LMO2 protein [Homo sapiens]
gi|119588587|gb|EAW68181.1| LIM domain only 2 (rhombotin-like 1), isoform CRA_a [Homo sapiens]
Length = 151
Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 83/124 (66%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L C C + I +R+ LKA+D +WHEDCL C C CRLGEVG LY K LC+RDYLR
Sbjct: 20 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 79
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
LFG G CA+C K I A+EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE
Sbjct: 80 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQ 139
Query: 171 DYEE 174
D E
Sbjct: 140 DIYE 143
>gi|350396214|ref|XP_003484481.1| PREDICTED: LIM/homeobox protein Lhx9-like [Bombus impatiens]
Length = 417
Score = 146 bits (368), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 92/140 (65%), Gaps = 2/140 (1%)
Query: 45 GGASG--GLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLI 102
GG SG G+++CA CG +I ER+LL A+D +WH CLKC C L E+G + Y ++ +I
Sbjct: 183 GGPSGPTGIQQCAGCGGQIVERWLLLAMDRYWHNGCLKCSYCGAALAEIGHSCYTRSGMI 242
Query: 103 LCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC 162
LCK DY R+FG++G CA C IPA E+VMRA +V+H +CF C +C ++ GDR+YL
Sbjct: 243 LCKSDYRRMFGSSGACAGCGNAIPATELVMRAGGSVFHQKCFTCSKCGNQLVSGDRYYLL 302
Query: 163 DNKILCEYDYEERQVFANIA 182
+CE D+ + +++A
Sbjct: 303 SGSPVCETDWHKIVKSSSVA 322
>gi|440910064|gb|ELR59896.1| Rhombotin-2, partial [Bos grunniens mutus]
Length = 147
Score = 146 bits (368), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 83/124 (66%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L C C + I +R+ LKA+D +WHEDCL C C CRLGEVG LY K LC+RDYLR
Sbjct: 16 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 75
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
LFG G CA+C K I A+EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE
Sbjct: 76 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQ 135
Query: 171 DYEE 174
D E
Sbjct: 136 DIYE 139
>gi|354470381|ref|XP_003497486.1| PREDICTED: rhombotin-2-like [Cricetulus griseus]
gi|344238096|gb|EGV94199.1| Rhombotin-2 [Cricetulus griseus]
Length = 151
Score = 146 bits (368), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 83/124 (66%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L C C + I +R+ LKA+D +WHEDCL C C CRLGEVG LY K LC+RDYLR
Sbjct: 20 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 79
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
LFG G CA+C K I A+EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE
Sbjct: 80 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQ 139
Query: 171 DYEE 174
D E
Sbjct: 140 DIYE 143
>gi|417408110|gb|JAA50627.1| Putative transcription factor, partial [Desmodus rotundus]
Length = 148
Score = 146 bits (368), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 83/124 (66%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L C C + I +R+ LKA+D +WHEDCL C C CRLGEVG LY K LC+RDYLR
Sbjct: 17 LLTCGGCQQSIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 76
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
LFG G CA+C K I A+EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE
Sbjct: 77 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQ 136
Query: 171 DYEE 174
D E
Sbjct: 137 DIYE 140
>gi|281350950|gb|EFB26534.1| hypothetical protein PANDA_005865 [Ailuropoda melanoleuca]
gi|355566620|gb|EHH22999.1| LIM domain only protein 2, partial [Macaca mulatta]
gi|355752225|gb|EHH56345.1| LIM domain only protein 2, partial [Macaca fascicularis]
Length = 146
Score = 145 bits (367), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 83/124 (66%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L C C + I +R+ LKA+D +WHEDCL C C CRLGEVG LY K LC+RDYLR
Sbjct: 15 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 74
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
LFG G CA+C K I A+EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE
Sbjct: 75 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQ 134
Query: 171 DYEE 174
D E
Sbjct: 135 DIYE 138
>gi|355699530|gb|AES01158.1| LIM domain only 2 [Mustela putorius furo]
Length = 143
Score = 145 bits (367), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 83/124 (66%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L C C + I +R+ LKA+D +WHEDCL C C CRLGEVG LY K LC+RDYLR
Sbjct: 13 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 72
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
LFG G CA+C K I A+EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE
Sbjct: 73 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQ 132
Query: 171 DYEE 174
D E
Sbjct: 133 DIYE 136
>gi|449270732|gb|EMC81388.1| Rhombotin-2, partial [Columba livia]
Length = 144
Score = 145 bits (367), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 83/124 (66%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L C C + I +R+ LKA+D +WHEDCL C C CRLGEVG LY K LC+RDYLR
Sbjct: 13 LLTCGGCQQSIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 72
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
LFG G CA+C K I A+EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE
Sbjct: 73 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQ 132
Query: 171 DYEE 174
D E
Sbjct: 133 DIYE 136
>gi|405963181|gb|EKC28778.1| LIM domain transcription factor LMO4.1 [Crassostrea gigas]
Length = 165
Score = 145 bits (367), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 72/152 (47%), Positives = 95/152 (62%), Gaps = 3/152 (1%)
Query: 44 AGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLIL 103
A G + +K CA CG RI++RFLL A++ FWH CLKC CC L ++GS + +A +IL
Sbjct: 13 ADGYNAPIKACAGCGSRISDRFLLHAMERFWHTACLKCSCCQTNLEQLGS-CFTRAGMIL 71
Query: 104 CKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD 163
CK DY+RLF + G CA C + IPA EMVMR + NVYHL+CF C CN GDRF + +
Sbjct: 72 CKNDYMRLFCSGGSCAGCGQSIPANEMVMRTQGNVYHLKCFNCYTCNMPLSPGDRFGVVN 131
Query: 164 NKILCEYDYEERQVFANIAYNPSSLAHLRRQV 195
I+CE DY + V + N +S H R +
Sbjct: 132 GNIICENDYSKANVKGQV--NGNSRNHKYRGI 161
>gi|47224482|emb|CAG08732.1| unnamed protein product [Tetraodon nigroviridis]
Length = 153
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/133 (54%), Positives = 88/133 (66%), Gaps = 1/133 (0%)
Query: 50 GLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYL 109
L C C + I +RF LKA++ +WHEDCL C C CRLGEVG LY K LC+RDYL
Sbjct: 21 SLLTCGGCQQSIGDRFFLKAIEQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYL 80
Query: 110 RLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCE 169
RLFG G CA+C K I AFEM MR ++ VYHLECF C C FCVGDR+ L ++ I+CE
Sbjct: 81 RLFGQDGLCASCEKRIRAFEMTMRVRDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCE 140
Query: 170 YD-YEERQVFANI 181
D +E ++ NI
Sbjct: 141 QDIFEWTKLNNNI 153
>gi|395543649|ref|XP_003773727.1| PREDICTED: rhombotin-2 [Sarcophilus harrisii]
Length = 208
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 70/125 (56%), Positives = 82/125 (65%)
Query: 50 GLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYL 109
L C C + I +R+ LKA+D +WHEDCL C C CRLGEVG LY K LC+RDYL
Sbjct: 76 SLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYL 135
Query: 110 RLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCE 169
RLFG G CA+C K I A+EM MR K VYHLECF C C FCVGDR+ L ++ I+CE
Sbjct: 136 RLFGQDGLCASCDKRIRAYEMTMRVKEKVYHLECFKCAACQKHFCVGDRYLLINSDIVCE 195
Query: 170 YDYEE 174
D E
Sbjct: 196 QDIYE 200
>gi|301015740|pdb|2XJY|A Chain A, Crystal Structure Of The Lmo2:ldb1-Lid Complex, P21
Crystal Form
gi|301015742|pdb|2XJZ|A Chain A, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
gi|301015743|pdb|2XJZ|B Chain B, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
gi|301015744|pdb|2XJZ|C Chain C, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
gi|301015745|pdb|2XJZ|D Chain D, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
gi|301015746|pdb|2XJZ|E Chain E, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
Length = 131
Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 83/124 (66%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L C C + I +R+ LKA+D +WHEDCL C C CRLGEVG LY K LC+RDYLR
Sbjct: 2 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 61
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
LFG G CA+C K I A+EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE
Sbjct: 62 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQ 121
Query: 171 DYEE 174
D E
Sbjct: 122 DIYE 125
>gi|260820588|ref|XP_002605616.1| hypothetical protein BRAFLDRAFT_232718 [Branchiostoma floridae]
gi|229290951|gb|EEN61626.1| hypothetical protein BRAFLDRAFT_232718 [Branchiostoma floridae]
Length = 147
Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/122 (55%), Positives = 84/122 (68%)
Query: 53 ECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLF 112
+C C K I++R+ LKA+D +WHEDCL C C CRLGEVG LY K LCKRDYLRLF
Sbjct: 18 QCGGCSKNISDRYFLKAMDEYWHEDCLSCDLCGCRLGEVGRHLYSKYGRKLCKRDYLRLF 77
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
G G C AC K I A+EM+MR+ + V+HL+CF C CN FCVGD++ L +N I C+ D
Sbjct: 78 GKDGICCACGKRIRAYEMMMRSLDKVFHLDCFKCFTCNKNFCVGDKYVLLENTIFCDNDI 137
Query: 173 EE 174
E
Sbjct: 138 PE 139
>gi|62202595|gb|AAH93136.1| Lmo2 protein [Danio rerio]
Length = 159
Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/124 (55%), Positives = 82/124 (66%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L C C + I +RF LKA++ +WHEDCL C C CRLGEVG LY K LC+RDYLR
Sbjct: 27 LLTCGGCQQSIGDRFFLKAIEQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 86
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
LFG G CA+C K I AFEM MR ++ VYHLECF C C FC GDR+ L ++ I+CE
Sbjct: 87 LFGQDGLCASCEKRIRAFEMTMRVRDKVYHLECFKCAACQKHFCAGDRYLLINSDIVCEQ 146
Query: 171 DYEE 174
D E
Sbjct: 147 DIFE 150
>gi|147902984|ref|NP_001081112.1| rhombotin-2 [Xenopus laevis]
gi|82245456|sp|Q90XH3.1|RBTN2_XENLA RecName: Full=Rhombotin-2; AltName: Full=LIM domain only protein 2;
Short=LMO-2; Short=Lmo2-A; Short=xLMO-2
gi|14150745|gb|AAK54614.1|AF374473_1 LIM-only protein LMO-2 [Xenopus laevis]
gi|66911743|gb|AAH97502.1| Lmo2-A protein [Xenopus laevis]
Length = 158
Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/125 (55%), Positives = 82/125 (65%)
Query: 50 GLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYL 109
L C C + I +R+ LKA+D +WHEDCL C C CRLGEVG LY K LC+RDYL
Sbjct: 26 SLLTCGGCQQSIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYL 85
Query: 110 RLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCE 169
RLFG G CA+C I A+EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE
Sbjct: 86 RLFGQDGLCASCDNRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCE 145
Query: 170 YDYEE 174
D E
Sbjct: 146 QDIYE 150
>gi|444524171|gb|ELV13774.1| Rhombotin-2 [Tupaia chinensis]
Length = 151
Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/124 (55%), Positives = 83/124 (66%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L C C + I +R+ LKA+D +WHEDCL C C CRLGE G LY K LC+RDYLR
Sbjct: 20 LLTCGGCQQSIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEGGRRLYYKLGRKLCRRDYLR 79
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
LFG G CA+C K I A+EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE+
Sbjct: 80 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLVNSDIVCEH 139
Query: 171 DYEE 174
D E
Sbjct: 140 DIYE 143
>gi|41053684|ref|NP_956566.1| uncharacterized protein LOC393242 [Danio rerio]
gi|29124458|gb|AAH49054.1| Zgc:56628 [Danio rerio]
Length = 172
Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/140 (51%), Positives = 92/140 (65%), Gaps = 6/140 (4%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
T A+ V GALA K C CG +I++RFLL ALD +WH CLKC CC +L E+
Sbjct: 18 NTQAAHVRMGALA------WKRCVGCGCKISDRFLLFALDGYWHCHCLKCSCCQAQLAEI 71
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
GS+ + K LILCK DYLRLFG +G C AC IPA EMVMRA+ NV+H++CF C C++
Sbjct: 72 GSSCFTKRGLILCKSDYLRLFGHSGACRACGTSIPANEMVMRAQGNVFHVKCFVCSICHN 131
Query: 152 RFCVGDRFYLCDNKILCEYD 171
+ GDRF+ + K+ CE D
Sbjct: 132 QLVPGDRFHYANGKLYCERD 151
>gi|402589676|gb|EJW83607.1| beadex/dLMO protein [Wuchereria bancrofti]
Length = 101
Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/94 (70%), Positives = 77/94 (81%)
Query: 101 LILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFY 160
+ILC RDYLRLFG TG CAAC K IPAFE+VMRAK+NVYHL CFACQ CN RFC+GD+FY
Sbjct: 1 MILCARDYLRLFGLTGTCAACDKNIPAFELVMRAKDNVYHLRCFACQVCNQRFCIGDKFY 60
Query: 161 LCDNKILCEYDYEERQVFANIAYNPSSLAHLRRQ 194
LC+NKILC+YD+EER F AYN +LA L ++
Sbjct: 61 LCENKILCQYDFEERVTFHQAAYNNQNLAKLTKK 94
>gi|47206717|emb|CAG12297.1| unnamed protein product [Tetraodon nigroviridis]
Length = 137
Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 83/131 (63%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
+ CA CG RI +RFLL +++ +WH CL+C CC +LG + + Y + LILC+ DY RL
Sbjct: 1 RTCAGCGGRIADRFLLFSMERYWHTRCLRCSCCHAQLGALSRSCYSRGGLILCRDDYARL 60
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
FG G C AC + IP EMVMRA+ +VYHL+CFAC C HR GDRF+ + + CE D
Sbjct: 61 FGHAGACGACGQTIPPSEMVMRAQGSVYHLKCFACATCRHRLVPGDRFHYVNGSVFCEQD 120
Query: 172 YEERQVFANIA 182
+ Q+ A
Sbjct: 121 HPGGQLLGGHA 131
>gi|156549266|ref|XP_001599629.1| PREDICTED: lipoma-preferred partner homolog [Nasonia vitripennis]
Length = 281
Score = 142 bits (358), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 61/131 (46%), Positives = 85/131 (64%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
++CA CG RI +R+LL AL+ +WH +CLKC C L E+G + Y K N+ILCK DY R+
Sbjct: 130 QQCAGCGNRIVDRWLLFALERYWHNNCLKCTTCGTALAEIGQSCYSKGNMILCKNDYTRM 189
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
FG+TG CAAC + I A E+V RA NV+H +CF C +C + GDR+YL +CE D
Sbjct: 190 FGSTGACAACGQTIAATELVTRAGGNVFHPKCFTCTKCGTQLTQGDRYYLLSGAAVCETD 249
Query: 172 YEERQVFANIA 182
+ + + +A
Sbjct: 250 FNKMMKSSPVA 260
>gi|427795151|gb|JAA63027.1| hypothetical protein, partial [Rhipicephalus pulchellus]
Length = 182
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 60/118 (50%), Positives = 85/118 (72%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA CG +I +R+LL ALD +WH CLKC CC L ++G++ + KA +ILC+ DY+RLFG
Sbjct: 42 CAGCGAKILDRYLLHALDRYWHNGCLKCSCCQATLADIGASCFAKAGMILCRNDYIRLFG 101
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
T+G C+ C ++IPA + VMRA NVYH++CFAC +C+ + GDR+ L + +LCE D
Sbjct: 102 TSGACSGCGQMIPANDYVMRAAQNVYHVKCFACVKCHSQLVPGDRYNLVNGNVLCEQD 159
>gi|270154817|gb|ACZ62637.1| LIM domain only protein [Paracentrotus lividus]
Length = 174
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 94/149 (63%), Gaps = 6/149 (4%)
Query: 22 RLATHYQVDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKC 81
R+ H Q+D ++ +V + + EC C + I +R+ L+A++ +WHEDCL C
Sbjct: 29 RVERHSQID--SNGETVDE---VLNVNPSYLECLGCKESIKDRYFLRAMEKYWHEDCLSC 83
Query: 82 GCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNV-YH 140
C CRLGEV +Y K LCKRDYLRLF +G C+AC + IPA+E+VM + YH
Sbjct: 84 DLCQCRLGEVDCHMYSKLGRKLCKRDYLRLFAPSGVCSACNRAIPAYELVMTTSSECRYH 143
Query: 141 LECFACQQCNHRFCVGDRFYLCDNKILCE 169
LECF C QC+ FCVGD+++L +KI+CE
Sbjct: 144 LECFKCSQCDKHFCVGDKYFLVGSKIMCE 172
>gi|390358172|ref|XP_003729196.1| PREDICTED: rhombotin-2-like [Strongylocentrotus purpuratus]
Length = 174
Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 94/149 (63%), Gaps = 6/149 (4%)
Query: 22 RLATHYQVDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKC 81
R+ H Q+D ++ +V + + EC C + I +R+ L+A++ +WHEDCL C
Sbjct: 29 RVERHSQID--SNGETVDE---VLNVNPSYLECHGCKESIKDRYFLRAIEKYWHEDCLSC 83
Query: 82 GCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNV-YH 140
C CRLGEV +Y K LCKRDYLRLF +G C+AC + IPA+E+VM + YH
Sbjct: 84 DLCQCRLGEVDCHMYSKLGRKLCKRDYLRLFAPSGVCSACNRAIPAYELVMTTSSECRYH 143
Query: 141 LECFACQQCNHRFCVGDRFYLCDNKILCE 169
LECF C QC+ FCVGD+++L +KI+CE
Sbjct: 144 LECFKCSQCDKHFCVGDKYFLVGSKIMCE 172
>gi|91082483|ref|XP_972328.1| PREDICTED: similar to GA19074-PA [Tribolium castaneum]
gi|270007532|gb|EFA03980.1| hypothetical protein TcasGA2_TC014129 [Tribolium castaneum]
Length = 341
Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 61/136 (44%), Positives = 86/136 (63%), Gaps = 10/136 (7%)
Query: 49 GGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDY 108
G +K CA CG +I ERFLL ALD +WH CLKC CC L ++G++ + K +ILCK+DY
Sbjct: 182 GTVKVCAGCGGKIVERFLLHALDRYWHNSCLKCSCCAAMLADIGTSCFTKGGMILCKQDY 241
Query: 109 LRLFGTTGYCAACTKVIPAFEMVMRAKN----------NVYHLECFACQQCNHRFCVGDR 158
RLFG +G C+AC ++IPA E VMR+ +V+HL+CF C +C GDR
Sbjct: 242 TRLFGNSGACSACGQMIPASEFVMRSGGPSPQQPGAPLHVFHLKCFVCSKCGAPLVQGDR 301
Query: 159 FYLCDNKILCEYDYEE 174
+Y+ ++CE D+ +
Sbjct: 302 YYMLSGSLVCEQDWHK 317
>gi|242011268|ref|XP_002426377.1| LIM domain transcription factor LMO4, putative [Pediculus humanus
corporis]
gi|212510454|gb|EEB13639.1| LIM domain transcription factor LMO4, putative [Pediculus humanus
corporis]
Length = 256
Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 65/135 (48%), Positives = 85/135 (62%), Gaps = 10/135 (7%)
Query: 50 GLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYL 109
GLK C CG +I ERFLL ALD +WH CLKC CC L ++GS+ + KA +ILCK DY
Sbjct: 93 GLKICGGCGGKIVERFLLHALDRYWHNGCLKCSCCHAMLADIGSSCFTKAGMILCKTDYA 152
Query: 110 RLFGTTGYCAACTKVIPAFEMVMRA----------KNNVYHLECFACQQCNHRFCVGDRF 159
RLFG TG C+AC + IP E VMRA ++V+HL+CF C +C + GDR+
Sbjct: 153 RLFGNTGACSACGQTIPPNEFVMRAGAGAPGPHPQSHHVFHLKCFVCSKCGTQLVQGDRY 212
Query: 160 YLCDNKILCEYDYEE 174
YL ++CE D+ +
Sbjct: 213 YLLAGSLVCEQDWHK 227
>gi|403182403|gb|EAT47695.2| AAEL001207-PA [Aedes aegypti]
Length = 702
Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats.
Identities = 64/165 (38%), Positives = 88/165 (53%), Gaps = 31/165 (18%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+K C CG +ITERF L ALD +WH CLKC CC L ++GS+ Y ++ +ILCK DY R
Sbjct: 74 VKHCGGCGGKITERFFLHALDRYWHNSCLKCSCCGAMLADIGSSCYTRSGMILCKADYSR 133
Query: 111 LFGTTGYCAACTKVIPAFEMVMRA------------------------------KNNVYH 140
LFG TG C+AC + IPA E VMR +++V+H
Sbjct: 134 LFG-TGACSACHQTIPANEFVMRTTSHTTINNNLNNASNQNGANNNNNNGQAVPQHHVFH 192
Query: 141 LECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFANIAYNP 185
L+CF C +C GDR+Y+ ++CE D+ + +N NP
Sbjct: 193 LKCFQCSKCGCHLVQGDRYYMLGGSLVCEQDWHKLVKSSNAQTNP 237
>gi|321477752|gb|EFX88710.1| hypothetical protein DAPPUDRAFT_6311 [Daphnia pulex]
Length = 126
Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 64/123 (52%), Positives = 84/123 (68%), Gaps = 1/123 (0%)
Query: 50 GLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYL 109
G++ CA CG +I ERFL ALD FWH CLKC CC RL ++G + Y KA +ILC+ DY+
Sbjct: 4 GVRACAGCGGKILERFLFHALDRFWHHGCLKCSCCGARLADIGVSCYTKAGMILCRADYV 63
Query: 110 RLFGTTGYCAACTKVIPAFEMVMRAKN-NVYHLECFACQQCNHRFCVGDRFYLCDNKILC 168
RLFG++G C+AC + IPA E+VMR VYH++CFAC +C + GDR+ L +LC
Sbjct: 64 RLFGSSGACSACGQGIPANELVMRVGGAGVYHVKCFACTKCQTQLMPGDRYALIGGSLLC 123
Query: 169 EYD 171
E D
Sbjct: 124 EQD 126
>gi|432952552|ref|XP_004085130.1| PREDICTED: LIM domain transcription factor LMO4.1-like [Oryzias
latipes]
Length = 162
Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 75/160 (46%), Positives = 98/160 (61%), Gaps = 6/160 (3%)
Query: 29 VDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRL 88
V+ +A +VT + GG + C CG RI +RFLL +++ +WH CLKC CC L
Sbjct: 2 VNSRVEAPTVT---VMGGGGAAGRSCGGCGGRILDRFLLFSMERYWHTRCLKCSCCHAPL 58
Query: 89 GEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 148
GE ST Y K +ILCK DY+RLFG +G C AC + IPA EMVMRA+ NVYHL+CF C
Sbjct: 59 GEFSSTCYSKGGMILCKNDYIRLFGHSGACCACGQSIPASEMVMRAQGNVYHLKCFTCAT 118
Query: 149 CNHRFCVGDRFYLCDNKILCEYDYEERQVFANIAYNPSSL 188
C +R GDRF+ + I CE+D + A +PSS+
Sbjct: 119 CRNRLVPGDRFHYINGTIFCEHDRPGGGLHAG---HPSSI 155
>gi|260793702|ref|XP_002591850.1| hypothetical protein BRAFLDRAFT_125337 [Branchiostoma floridae]
gi|229277061|gb|EEN47861.1| hypothetical protein BRAFLDRAFT_125337 [Branchiostoma floridae]
Length = 329
Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 61/120 (50%), Positives = 82/120 (68%)
Query: 48 SGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 107
+G +K+CA CG +I +RFLL ALD +WH CLKC CC +LG++GS+ + KA +ILCK D
Sbjct: 59 NGSVKKCAGCGGKIGDRFLLHALDRYWHVACLKCSCCQAQLGDIGSSCFSKAGMILCKTD 118
Query: 108 YLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKIL 167
Y+RLFG +G C AC + IPA E VMR + NVYH++CF C C ++ GD L +L
Sbjct: 119 YIRLFGASGACNACGQSIPANEFVMRTQGNVYHVKCFTCFTCRYQLSPGDSSLLSRVGVL 178
>gi|339244905|ref|XP_003378378.1| putative LIM domain protein [Trichinella spiralis]
gi|316972716|gb|EFV56377.1| putative LIM domain protein [Trichinella spiralis]
Length = 164
Score = 137 bits (344), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 68/116 (58%), Positives = 87/116 (75%), Gaps = 3/116 (2%)
Query: 81 CGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYH 140
C C+CRL +VGS+L+ K ++ILCK DYLR+FG G C+AC+K IPA EMVMRA NVYH
Sbjct: 33 CAMCNCRLTQVGSSLFVKKDMILCKTDYLRVFGLKGKCSACSKDIPACEMVMRAGKNVYH 92
Query: 141 LECFACQQCNHRFCVGDRFYL--CDNKILCEYDYEERQVFANIAY-NPSSLAHLRR 193
LECF CQ C+ RFCVG++FYL +N+ILCE D++ER V A +A PS L ++R
Sbjct: 93 LECFGCQDCHCRFCVGEKFYLDVDNNRILCEDDFKERMVLAQMATCPPSKLNTMKR 148
>gi|349803667|gb|AEQ17306.1| putative rhombotin-2 [Pipa carvalhoi]
Length = 130
Score = 136 bits (343), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 68/124 (54%), Positives = 82/124 (66%), Gaps = 1/124 (0%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L C C + I +R+ LKA+D +WHEDCL C C CRLG VG LY K LC+RDYLR
Sbjct: 1 LLTCGGCHQSIGDRYFLKAIDQYWHEDCLSCDLCGCRLG-VGRRLYYKLGRKLCRRDYLR 59
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
LFG G CA+C K I A+EM MR K+ VYHLECF C C FCVG+R+ L ++ I+CE
Sbjct: 60 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGNRYLLINSDIVCEQ 119
Query: 171 DYEE 174
D E
Sbjct: 120 DIYE 123
>gi|291223505|ref|XP_002731750.1| PREDICTED: LIM domain only protein-like [Saccoglossus kowalevskii]
Length = 153
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/121 (52%), Positives = 80/121 (66%), Gaps = 1/121 (0%)
Query: 53 ECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLF 112
EC C ++I +++ LKA+ +WHEDCL C C CRLGEVG + K LCKRDYLRLF
Sbjct: 22 ECGECREKIKDQYFLKAIGKYWHEDCLVCDLCQCRLGEVGCHVLVKLGRKLCKRDYLRLF 81
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNV-YHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
G TG C +C + I A+EM M+ V YHLECF C +C FCVGD+FY ++ I CE D
Sbjct: 82 GPTGLCNSCQQPIAAYEMAMKITPQVQYHLECFKCAECEKNFCVGDKFYNLESNIFCETD 141
Query: 172 Y 172
Y
Sbjct: 142 Y 142
>gi|335776020|gb|AEH58766.1| LIM domain transcription factor LMO4-like protein [Equus caballus]
Length = 129
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 56/107 (52%), Positives = 78/107 (72%)
Query: 65 FLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKV 124
FLL A+D +WH CLKC CC +LG++G++ Y K+ +ILC+ DY+RLFG +G C+AC +
Sbjct: 1 FLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQS 60
Query: 125 IPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
IPA E+VMRA+ NVYHL+CF C C +R GDRF+ + + CE+D
Sbjct: 61 IPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 107
>gi|241738263|ref|XP_002414043.1| rhombotin, putative [Ixodes scapularis]
gi|215507897|gb|EEC17351.1| rhombotin, putative [Ixodes scapularis]
Length = 80
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/73 (80%), Positives = 65/73 (89%)
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
LFGTTG C+AC K IPAFEMVMRA+ NVYHLECFACQQCN RFCVGDRFYL +N+ILCEY
Sbjct: 1 LFGTTGLCSACNKTIPAFEMVMRARGNVYHLECFACQQCNQRFCVGDRFYLHENRILCEY 60
Query: 171 DYEERQVFANIAY 183
DYEER +FAN+ Y
Sbjct: 61 DYEERMIFANMPY 73
>gi|358335730|dbj|GAA54362.1| LIM domain transcription factor LMO4-B [Clonorchis sinensis]
Length = 303
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 85/133 (63%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA CG I ER LL ALD FWH CL C CC RL E+G +++ +++++LC++DYLRLFG
Sbjct: 5 CAGCGDPIVERTLLNALDRFWHTGCLNCSCCGLRLDELGPSVFVRSDMLLCRQDYLRLFG 64
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
+G CA C + IP E+VMR + +VYH+ CF C C+ + GD+ L + + CE ++
Sbjct: 65 LSGTCAKCRQKIPPDELVMRCQESVYHVRCFCCFHCHAQLNPGDKVCLVEGNLFCELEFP 124
Query: 174 ERQVFANIAYNPS 186
+ + ++P+
Sbjct: 125 QLFSTTTVKWSPT 137
>gi|256071672|ref|XP_002572163.1| lim-only [Schistosoma mansoni]
gi|353229928|emb|CCD76099.1| putative lim-only [Schistosoma mansoni]
Length = 294
Score = 129 bits (325), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 58/139 (41%), Positives = 83/139 (59%), Gaps = 6/139 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA CG I E+ LL A+D FWH CL C CC RL E+G +++ ++N++LC++DYL+LFG
Sbjct: 5 CAGCGGPIVEKTLLNAIDRFWHTSCLNCSCCGLRLDELGPSVFVRSNMLLCRQDYLKLFG 64
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
+G CA C IP E+VMR ++ VYH+ CF C C+ GD+ D + CE++
Sbjct: 65 LSGTCAKCRVQIPPDELVMRCQDKVYHVNCFCCTHCHSPLHPGDKVCFMDGNLFCEHE-- 122
Query: 174 ERQVFANIAYNPSSLAHLR 192
F ++ P L LR
Sbjct: 123 ----FPHLFSGPPKLTSLR 137
>gi|189503044|gb|ACE06903.1| unknown [Schistosoma japonicum]
gi|226469222|emb|CAX70090.1| LIM domain transcription factor LMO4 [Schistosoma japonicum]
gi|226469224|emb|CAX70091.1| LIM domain transcription factor LMO4 [Schistosoma japonicum]
gi|226469226|emb|CAX70092.1| LIM domain transcription factor LMO4 [Schistosoma japonicum]
Length = 291
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 77/121 (63%)
Query: 53 ECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLF 112
CA CG I E+ LL A+D FWH CL C CC RL E+G +++ ++N++LC++DYL+LF
Sbjct: 4 SCAGCGGPIVEKTLLNAIDRFWHTTCLNCSCCGLRLDELGPSVFVRSNMLLCRQDYLKLF 63
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
G +G CA C IP E+VMR ++ VYH+ CF C C+ GD+ D + CE+++
Sbjct: 64 GLSGTCAKCRVQIPPDELVMRCQDKVYHVNCFCCTHCHSPLHPGDKVCFMDGNLFCEHEF 123
Query: 173 E 173
Sbjct: 124 P 124
>gi|29841053|gb|AAP06066.1| similar to NM_006769 LIM domain only 4 in Homo sapiens [Schistosoma
japonicum]
Length = 291
Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 76/121 (62%)
Query: 53 ECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLF 112
CA CG I E+ LL A+D FWH CL C CC RL E G +++ ++N++LC++DYL+LF
Sbjct: 4 SCAGCGGPIVEKTLLNAIDRFWHTTCLNCSCCGLRLDEFGPSVFVRSNMLLCRQDYLKLF 63
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
G +G CA C IP E+VMR ++ VYH+ CF C C+ GD+ D + CE+++
Sbjct: 64 GLSGTCAKCRVQIPPDELVMRCQDKVYHVNCFCCTHCHSPLHPGDKVCFMDGNLFCEHEF 123
Query: 173 E 173
Sbjct: 124 P 124
>gi|237512911|dbj|BAA07578.2| LIM homeodomain protein Hr-Lhx3 a-form [Halocynthia roretzi]
Length = 690
Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats.
Identities = 55/125 (44%), Positives = 77/125 (61%), Gaps = 6/125 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +C C RI +RF+LK D WH CLKC C +L E + + NL+ CK D+ +
Sbjct: 279 IPKCTGCEHRIFDRFILKVQDKPWHSQCLKCNDCSAQLSE---KCFSRGNLVFCKDDFFK 335
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
FGT C AC IP E++ RA++NVYHLECF C C+ + GD+FYL DN+++C+
Sbjct: 336 RFGTK--CTACGHGIPPTEVIRRAQDNVYHLECFCCFLCHEKMGTGDQFYLLEDNRLVCK 393
Query: 170 YDYEE 174
DYE+
Sbjct: 394 KDYEQ 398
>gi|391334316|ref|XP_003741551.1| PREDICTED: LIM domain transcription factor LMO4-A-like [Metaseiulus
occidentalis]
Length = 189
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 88/150 (58%), Gaps = 11/150 (7%)
Query: 33 TDASSVTQGALAGGASGGL-------KECASCGKRITERFLLKALDLFWHEDCLKCGCCD 85
+ G+L GG+ + CA+CG I +R+ L A+D +WH CLKC C
Sbjct: 9 PSPTGAPAGSLGHANHGGVQPSPPANRPCAACGGAIQDRYFLHAMDRYWHHSCLKCSLCA 68
Query: 86 CRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKN----NVYHL 141
L ++G++ + K ++ILC+ DY+R+FG+ G CAAC ++IPA + VMRA + VYH
Sbjct: 69 TPLADIGTSCFFKNDMILCRTDYVRMFGSPGMCAACNQMIPANDYVMRAPSMRGGQVYHP 128
Query: 142 ECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
CF+C +C ++ GDR+ L + + CE D
Sbjct: 129 TCFSCVKCQNQLKPGDRYNLVNGSLFCEQD 158
>gi|195050615|ref|XP_001992931.1| GH13372 [Drosophila grimshawi]
gi|193899990|gb|EDV98856.1| GH13372 [Drosophila grimshawi]
Length = 241
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 90/162 (55%), Gaps = 19/162 (11%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+K C CG +I++R+LL ALD +WH CLKC CC L +VGS+ + + LILCK+DY
Sbjct: 74 IKVCGGCGDKISDRYLLYALDRYWHNGCLKCHCCGAMLADVGSSCFTRRGLILCKKDYSS 133
Query: 111 LFGTTGYCAACTKVIPAFEMVMRA----KNN-------------VYHLECFACQQCNHRF 153
+FG++G C C + IP EMV +A NN VYHL CF+C +C
Sbjct: 134 MFGSSGVCTGCGETIPPSEMVAKALTGINNNIDLQNQQKHIINCVYHLRCFSCAKCGSNL 193
Query: 154 CVGDRFYLCDNKILCEYDYEERQVFANIAYNPSSLAHLRRQV 195
GDR+ + +CE D+ ++ N + + +LA + +V
Sbjct: 194 RPGDRYTMLGANPVCEQDWH--KLLKNPSNSNGTLAQRKGKV 233
>gi|195119225|ref|XP_002004132.1| GI18740 [Drosophila mojavensis]
gi|193914707|gb|EDW13574.1| GI18740 [Drosophila mojavensis]
Length = 238
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 92/159 (57%), Gaps = 16/159 (10%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+K C CG +I++R+LL ALD +WH CLKC CC L +VGS+ + + LILCK+DY
Sbjct: 74 IKVCGGCGDKISDRYLLYALDRYWHNSCLKCHCCGAMLADVGSSCFTRRGLILCKKDYSS 133
Query: 111 LFGTTGYCAACTKVIPAFEMVMRA---KNNV-----------YHLECFACQQCNHRFCVG 156
+FG++G C+ C + IP EMV +A NN+ +HL CF+C +C G
Sbjct: 134 MFGSSGVCSGCGETIPPSEMVAKALTGINNIDLQNQQKQIINFHLRCFSCAKCGSNLRPG 193
Query: 157 DRFYLCDNKILCEYDYEERQVFANIAYNPSSLAHLRRQV 195
DR+ + ++CE D+ ++ N + + +LA + +V
Sbjct: 194 DRYTMLGASLVCEQDWH--KLLKNPSNSNGTLAQRKGKV 230
>gi|37779048|gb|AAP20184.1| LIM domain only-2 [Pagrus major]
Length = 127
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/96 (59%), Positives = 66/96 (68%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L C C + I +RF LKA++ +WHEDCL C C CRLGEVG LY K LC+RDYLR
Sbjct: 30 LLTCGGCQQSIGDRFFLKAIEQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 89
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFAC 146
LFG G CA+C K I AFEM MR ++ VYHLECF C
Sbjct: 90 LFGQDGLCASCEKRIRAFEMTMRVRDKVYHLECFKC 125
>gi|195403013|ref|XP_002060090.1| GJ14918 [Drosophila virilis]
gi|194149412|gb|EDW65107.1| GJ14918 [Drosophila virilis]
Length = 240
Score = 119 bits (298), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 91/161 (56%), Gaps = 18/161 (11%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+K C CG +I++R+LL ALD +WH CLKC CC L +VG++ + + LILCK+DY
Sbjct: 74 IKVCGGCGDKISDRYLLYALDRYWHNGCLKCHCCGAMLADVGASCFTRRGLILCKKDYSS 133
Query: 111 LFGTTGYCAACTKVIPAFEMVMRA----------------KNNVYHLECFACQQCNHRFC 154
+FG++G C+ C + IP EMV +A N V+HL CF+C +C
Sbjct: 134 MFGSSGVCSGCGETIPPSEMVAKALTGINNIDLQNQQKQIINCVFHLRCFSCAKCGSNLR 193
Query: 155 VGDRFYLCDNKILCEYDYEERQVFANIAYNPSSLAHLRRQV 195
GDR+ + ++CE D+ ++ N + + +L+ + +V
Sbjct: 194 PGDRYTMLGASLVCEQDWH--KLLKNPSNSNGTLSQRKGKV 232
>gi|449478428|ref|XP_002187534.2| PREDICTED: LIM/homeobox protein Lhx3 [Taeniopygia guttata]
Length = 665
Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats.
Identities = 53/121 (43%), Positives = 74/121 (61%), Gaps = 6/121 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RF+LK LD WH CLKC C +L E + + + + CK D+ + FG
Sbjct: 28 CAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQTQLAE---KCFSRGDGVYCKEDFFKRFG 84
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDY 172
T CAAC + IP ++V RA++ VYHL CFAC C + GD FYL D++++C+ DY
Sbjct: 85 TK--CAACHQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEFYLMEDSRLVCKADY 142
Query: 173 E 173
E
Sbjct: 143 E 143
>gi|443711321|gb|ELU05149.1| hypothetical protein CAPTEDRAFT_228137 [Capitella teleta]
Length = 506
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 78/128 (60%), Gaps = 6/128 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +CA CG I +RF+LK LD WH CL C C+ G + + K + + CK D+ R
Sbjct: 141 IPKCAGCGDAILDRFILKVLDRSWHSKCLMCADCN---GHLSDKCFSKGDKVYCKEDFFR 197
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDN-KILCE 169
FGT CA C + IP ++V RA++NVYHLECFAC C+ + GD FYL D+ K++C+
Sbjct: 198 RFGTK--CAGCEQGIPPTQVVRRAQDNVYHLECFACSMCSQQLNTGDEFYLMDDKKLVCK 255
Query: 170 YDYEERQV 177
DYE +
Sbjct: 256 GDYESNKA 263
>gi|125986810|ref|XP_001357168.1| GA19074 [Drosophila pseudoobscura pseudoobscura]
gi|195146774|ref|XP_002014359.1| GL19153 [Drosophila persimilis]
gi|54645497|gb|EAL34236.1| GA19074 [Drosophila pseudoobscura pseudoobscura]
gi|194106312|gb|EDW28355.1| GL19153 [Drosophila persimilis]
Length = 241
Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 90/161 (55%), Gaps = 18/161 (11%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+K C CG +I++R+LL ALD +WH CLKC CC L EVGS+ + + LILCK+DY
Sbjct: 75 IKVCGGCGDKISDRYLLYALDRYWHNGCLKCHCCGAMLAEVGSSCFTRRGLILCKKDYSS 134
Query: 111 LFGTTGYCAACTKVIPAFEMVMRA----------------KNNVYHLECFACQQCNHRFC 154
+FG +G C+ C + IP E+V +A N V+HL CF+C +C
Sbjct: 135 MFGCSGVCSGCGETIPPSELVAKALTGINNIDIQSQQKQIINCVFHLRCFSCAKCGSSLR 194
Query: 155 VGDRFYLCDNKILCEYDYEERQVFANIAYNPSSLAHLRRQV 195
GDR+ + ++CE D+ ++ + A + +LA + +V
Sbjct: 195 PGDRYTMLGASLVCEQDWH--KLLKSPANSNGTLAQRKGKV 233
>gi|24583264|ref|NP_609359.1| CG5708, isoform A [Drosophila melanogaster]
gi|24583266|ref|NP_723534.1| CG5708, isoform B [Drosophila melanogaster]
gi|22946096|gb|AAF52877.2| CG5708, isoform A [Drosophila melanogaster]
gi|22946097|gb|AAN10724.1| CG5708, isoform B [Drosophila melanogaster]
gi|46409202|gb|AAS93758.1| LD11652p [Drosophila melanogaster]
Length = 241
Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 80/140 (57%), Gaps = 16/140 (11%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+K C CG +I++R+LL ALD +WH CLKC CC L EVGS+ + + LILCK+DY
Sbjct: 75 IKVCGGCGDKISDRYLLYALDRYWHNGCLKCHCCGAMLAEVGSSCFTRRGLILCKKDYSS 134
Query: 111 LFGTTGYCAACTKVIPAFEMVMRA----------------KNNVYHLECFACQQCNHRFC 154
+FG +G C+ C + IP E+V +A N V+HL CF+C +C
Sbjct: 135 MFGCSGVCSGCGETIPPSELVAKALTGINNIDLQNQQKQIINCVFHLRCFSCAKCGSSLR 194
Query: 155 VGDRFYLCDNKILCEYDYEE 174
GDR+ + ++CE D+ +
Sbjct: 195 PGDRYTMLGASLVCEQDWHK 214
>gi|195339689|ref|XP_002036449.1| GM11938 [Drosophila sechellia]
gi|195473535|ref|XP_002089048.1| GE26318 [Drosophila yakuba]
gi|195578073|ref|XP_002078890.1| GD22293 [Drosophila simulans]
gi|194130329|gb|EDW52372.1| GM11938 [Drosophila sechellia]
gi|194175149|gb|EDW88760.1| GE26318 [Drosophila yakuba]
gi|194190899|gb|EDX04475.1| GD22293 [Drosophila simulans]
Length = 241
Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 80/140 (57%), Gaps = 16/140 (11%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+K C CG +I++R+LL ALD +WH CLKC CC L EVGS+ + + LILCK+DY
Sbjct: 75 IKVCGGCGDKISDRYLLYALDRYWHNGCLKCHCCGAMLAEVGSSCFTRRGLILCKKDYSS 134
Query: 111 LFGTTGYCAACTKVIPAFEMVMRA----------------KNNVYHLECFACQQCNHRFC 154
+FG +G C+ C + IP E+V +A N V+HL CF+C +C
Sbjct: 135 MFGCSGVCSGCGETIPPSELVAKALTGINNIDLQNQQKQIINCVFHLRCFSCAKCGSSLR 194
Query: 155 VGDRFYLCDNKILCEYDYEE 174
GDR+ + ++CE D+ +
Sbjct: 195 PGDRYTMLGASLVCEQDWHK 214
>gi|194761684|ref|XP_001963058.1| GF14129 [Drosophila ananassae]
gi|190616755|gb|EDV32279.1| GF14129 [Drosophila ananassae]
Length = 241
Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 80/140 (57%), Gaps = 16/140 (11%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+K C CG +I++R+LL ALD +WH CLKC CC L EVGS+ + + LILCK+DY
Sbjct: 75 IKVCGGCGDKISDRYLLYALDRYWHNGCLKCHCCGAMLAEVGSSCFTRRGLILCKKDYSS 134
Query: 111 LFGTTGYCAACTKVIPAFEMVMRA----------------KNNVYHLECFACQQCNHRFC 154
+FG +G C+ C + IP E+V +A N V+HL CF+C +C
Sbjct: 135 MFGCSGVCSGCGETIPPSELVAKALTGINNIDLQNQQKQIINCVFHLRCFSCAKCGSSLR 194
Query: 155 VGDRFYLCDNKILCEYDYEE 174
GDR+ + ++CE D+ +
Sbjct: 195 PGDRYTMLGASLVCEQDWHK 214
>gi|194859624|ref|XP_001969417.1| GG23969 [Drosophila erecta]
gi|190661284|gb|EDV58476.1| GG23969 [Drosophila erecta]
Length = 241
Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 80/140 (57%), Gaps = 16/140 (11%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+K C CG +I++R+LL ALD +WH CLKC CC L EVGS+ + + LILCK+DY
Sbjct: 75 IKVCGGCGDKISDRYLLYALDRYWHNGCLKCHCCGAMLAEVGSSCFTRRGLILCKKDYSS 134
Query: 111 LFGTTGYCAACTKVIPAFEMVMRA----------------KNNVYHLECFACQQCNHRFC 154
+FG +G C+ C + IP E+V +A N V+HL CF+C +C
Sbjct: 135 MFGCSGVCSGCGETIPPSELVAKALTGINNIDLQNQQKQIINCVFHLRCFSCAKCGSSLR 194
Query: 155 VGDRFYLCDNKILCEYDYEE 174
GDR+ + ++CE D+ +
Sbjct: 195 PGDRYTMLGASLVCEQDWHK 214
>gi|259013380|ref|NP_001158395.1| lim domain homeobox 3/4 transcription factor [Saccoglossus
kowalevskii]
gi|90659991|gb|ABD97272.1| lim domain homeobox 3/4 transcription factor [Saccoglossus
kowalevskii]
Length = 390
Score = 116 bits (290), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 79/131 (60%), Gaps = 6/131 (4%)
Query: 48 SGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 107
S + +C+ C I +RF+LK D WH CLKC C +L + Y + + CK D
Sbjct: 29 SSQIPKCSGCEHPILDRFILKVQDRAWHSKCLKCTDCQAQLSD---KCYSRGGQVYCKED 85
Query: 108 YLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKI 166
+ + FGT C+AC + IP ++V RA++NVYHL+CFAC CN + GD FYL DNK+
Sbjct: 86 FFKRFGTK--CSACDQGIPPTQVVRRAQDNVYHLQCFACVMCNRQLATGDEFYLMNDNKL 143
Query: 167 LCEYDYEERQV 177
+C+ DYE +V
Sbjct: 144 VCKGDYEAAKV 154
>gi|196000094|ref|XP_002109915.1| expressed hypothetical protein [Trichoplax adhaerens]
gi|190588039|gb|EDV28081.1| expressed hypothetical protein, partial [Trichoplax adhaerens]
Length = 119
Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 71/117 (60%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA CG I ++ LL ++D WH +CLKC CC RL +V + Y K+ LILC+RDY+R FG
Sbjct: 2 CAGCGTEIRDKHLLLSMDRHWHVNCLKCSCCGIRLDDVATKCYYKSGLILCQRDYIRRFG 61
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
+ G CA C + I EMV++ YH CF C C R GDRF L + I+CE+
Sbjct: 62 SGGSCAGCLQAISPDEMVLKLNQRAYHPNCFTCVVCTSRLTSGDRFRLVNGHIVCEH 118
>gi|345325463|ref|XP_003430923.1| PREDICTED: hypothetical protein LOC100085508 [Ornithorhynchus
anatinus]
Length = 884
Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats.
Identities = 51/124 (41%), Positives = 75/124 (60%), Gaps = 6/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +CA C + I ++F+LK LD WH CLKC C +L + + +A + CK D+ +
Sbjct: 577 IPQCAGCNQHILDKFILKVLDRHWHGSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFK 633
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
FGT C AC + IP ++V +A++ VYHL CFAC CN + GD FYL D +++C+
Sbjct: 634 RFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCK 691
Query: 170 YDYE 173
DYE
Sbjct: 692 EDYE 695
>gi|306526228|sp|Q25132.2|LHX3_HALRO RecName: Full=LIM/homeobox protein Lhx3; Short=Hr-Lhx3; Short=LIM
homeobox protein 3; AltName: Full=LIM/homeobox protein
LIM; Short=HrLIM
Length = 692
Score = 115 bits (289), Expect = 9e-24, Method: Composition-based stats.
Identities = 53/125 (42%), Positives = 75/125 (60%), Gaps = 6/125 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +C C RI +RF+LK D WH LKC C +L E + + NL+ CK D+ +
Sbjct: 279 IPKCTGCEHRIFDRFILKVQDKPWHSQGLKCNDCSAQLSE---KCFSRGNLVFCKDDFFK 335
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
FGT C AC IP E++ RA++NVYHLE F C C+ + GD+FYL DN+++C+
Sbjct: 336 RFGTK--CTACGHGIPPTEVIRRAQDNVYHLEGFCCFLCHEKMGTGDQFYLLEDNRLVCK 393
Query: 170 YDYEE 174
DYE+
Sbjct: 394 KDYEQ 398
>gi|49659006|emb|CAD37944.1| homeobox protein LHX [Suberites domuncula]
Length = 342
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 80/136 (58%), Gaps = 6/136 (4%)
Query: 39 TQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQK 98
T+ +G SG + CA C I +RF+LK LD WH CL+C CD L + Y +
Sbjct: 104 TEQEHSGSNSGNIPCCAGCHHPIVDRFILKVLDKPWHSKCLRCVDCDMLLTD---KCYSR 160
Query: 99 ANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDR 158
+ CK D+ R FGT CA C + IP ++V RA+ NVYHL+CFAC C+ + GD
Sbjct: 161 DGEVFCKADFSRRFGT--RCAGCNQPIPPTQVVRRAQENVYHLQCFACFICSRQLSTGDE 218
Query: 159 FYLCDN-KILCEYDYE 173
FYL D+ K++C+ DYE
Sbjct: 219 FYLMDDKKLVCKADYE 234
>gi|15706308|dbj|BAB68342.1| Cs-LHX3 [Ciona savignyi]
Length = 472
Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 76/124 (61%), Gaps = 6/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +C C + I +RF+LK D WH CLKCG C +L + + + + + CK D+ +
Sbjct: 75 IPKCTGCAQHIFDRFILKVQDKPWHAQCLKCGDCGRQLTD---KCFSRGSFVYCKEDFFK 131
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
+GT CA C + IP E+V RA+ NVYHLECF C CN + GD+FYL DN+++C+
Sbjct: 132 RYGTK--CAGCDEAIPPTEVVRRAQENVYHLECFRCFMCNDQLGTGDQFYLLDDNRLVCK 189
Query: 170 YDYE 173
DYE
Sbjct: 190 KDYE 193
>gi|392340262|ref|XP_003754026.1| PREDICTED: LIM domain only protein 3-like [Rattus norvegicus]
Length = 114
Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/123 (49%), Positives = 71/123 (57%), Gaps = 42/123 (34%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYL
Sbjct: 22 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYL-- 79
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
RFCVGD+F+L +N ILC+ D
Sbjct: 80 ----------------------------------------RFCVGDKFFLKNNMILCQTD 99
Query: 172 YEE 174
YEE
Sbjct: 100 YEE 102
>gi|326923371|ref|XP_003207910.1| PREDICTED: LIM/homeobox protein Lhx3-like [Meleagris gallopavo]
Length = 399
Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/139 (41%), Positives = 80/139 (57%), Gaps = 11/139 (7%)
Query: 41 GALAGGASGGLKE-----CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTL 95
G + A GGL CA C + I +RF+LK LD WH CLKC C +L E
Sbjct: 14 GTIGAAADGGLLPAEIPLCAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQTQLAE---KC 70
Query: 96 YQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCV 155
+ + + + CK D+ + FGT CAAC + IP ++V RA++ VYHL CFAC C +
Sbjct: 71 FSRGDGVYCKEDFFKRFGTK--CAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLAT 128
Query: 156 GDRFYLC-DNKILCEYDYE 173
GD FYL D++++C+ DYE
Sbjct: 129 GDEFYLMEDSRLVCKADYE 147
>gi|345317962|ref|XP_001520897.2| PREDICTED: rhombotin-1-like, partial [Ornithorhynchus anatinus]
Length = 116
Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 51/69 (73%), Positives = 60/69 (86%)
Query: 109 LRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILC 168
L LFGTTG CAAC+K+IPAFEMVMRA+ NVYHL+CFACQ CN RFCVGD+F+L +N ILC
Sbjct: 39 LWLFGTTGNCAACSKLIPAFEMVMRARENVYHLDCFACQLCNQRFCVGDKFFLKNNMILC 98
Query: 169 EYDYEERQV 177
+ DYEE Q+
Sbjct: 99 QMDYEEGQL 107
Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 49 GGLKECASCGKRITE-RFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 107
G CA+C K I +++A + +H DC C C+ R VG + K N+ILC+ D
Sbjct: 43 GTTGNCAACSKLIPAFEMVMRARENVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQMD 101
Query: 108 Y 108
Y
Sbjct: 102 Y 102
>gi|340376253|ref|XP_003386648.1| PREDICTED: LIM/homeobox protein Lhx3-like [Amphimedon
queenslandica]
Length = 338
Score = 112 bits (281), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 77/128 (60%), Gaps = 6/128 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C RI +RF+L+ D WH CL+C C C+L + Y ++ + CK D+ + FG
Sbjct: 93 CAGCNTRIFDRFILRVQDKSWHAKCLRCSDCQCQLSD---KCYSRSGQVYCKDDFSKRFG 149
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDN-KILCEYDY 172
T CA C + IP ++V RA+ NVYHL+CFAC C + GD FYL D+ K++C+ DY
Sbjct: 150 T--RCAGCQQPIPPTQVVRRAQENVYHLQCFACFICQRQLSTGDEFYLMDDRKLVCKADY 207
Query: 173 EERQVFAN 180
E + A+
Sbjct: 208 EAAKARAD 215
>gi|148678644|gb|EDL10591.1| mCG11664 [Mus musculus]
gi|149049118|gb|EDM01572.1| rCG30144 [Rattus norvegicus]
Length = 103
Score = 112 bits (281), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 61/123 (49%), Positives = 71/123 (57%), Gaps = 42/123 (34%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYL
Sbjct: 11 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYL-- 68
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
RFCVGD+F+L +N ILC+ D
Sbjct: 69 ----------------------------------------RFCVGDKFFLKNNMILCQTD 88
Query: 172 YEE 174
YEE
Sbjct: 89 YEE 91
>gi|167859587|gb|ACA04748.1| Lim3 [Amphimedon queenslandica]
Length = 338
Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 77/128 (60%), Gaps = 6/128 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C RI +RF+L+ D WH CL+C C C+L + Y ++ + CK D+ + FG
Sbjct: 93 CAGCNTRIFDRFILRVQDKSWHAKCLRCSDCQCQLSD---KCYSRSGQVYCKDDFSKRFG 149
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDN-KILCEYDY 172
T CA C + IP ++V RA+ NVYHL+CFAC C + GD FYL D+ K++C+ DY
Sbjct: 150 T--RCAGCQQPIPPTQVVRRAQENVYHLQCFACFICQRQLSTGDEFYLMDDRKLVCKADY 207
Query: 173 EERQVFAN 180
E + A+
Sbjct: 208 EAAKARAD 215
>gi|383850854|ref|XP_003700989.1| PREDICTED: protein apterous-like [Megachile rotundata]
Length = 620
Score = 112 bits (280), Expect = 9e-23, Method: Composition-based stats.
Identities = 54/121 (44%), Positives = 72/121 (59%), Gaps = 3/121 (2%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRL-GEVGSTLYQKANLILCKRDYLRLF 112
CA CG RI++RF L+A+D WH CL+C C L GEV T + + I CK+DY R+F
Sbjct: 245 CAGCGLRISDRFYLQAVDRRWHAACLQCSHCRQGLDGEV--TCFSRDGNIYCKKDYYRMF 302
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
G+ CA C I A E+VMRA++ V+H+ CF+C C GD F + D +LC Y
Sbjct: 303 GSMKRCARCQAAILASELVMRARDLVFHVRCFSCAACAVPLTKGDHFGMRDGAVLCRLHY 362
Query: 173 E 173
E
Sbjct: 363 E 363
>gi|156390719|ref|XP_001635417.1| predicted protein [Nematostella vectensis]
gi|156222511|gb|EDO43354.1| predicted protein [Nematostella vectensis]
Length = 253
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 84/140 (60%), Gaps = 4/140 (2%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA CG RI ERF L A+D WH DCLKC C+ RL + T + K +ILC+ DY R F
Sbjct: 9 CAGCGSRILERFYLMAVDQEWHADCLKCSDCELRL-DNELTCFSKDGVILCREDYYRRF- 66
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
+ C++C++ I + E+VMRA++ VYH+ CFAC +C G+ F + +I C+ DYE
Sbjct: 67 SVKKCSSCSQAISSKELVMRARDQVYHVNCFACDRCKRMLATGEYFGMRGIRIYCKEDYE 126
Query: 174 ERQVFANIAYNPSSLAHLRR 193
E + + NP+ + L +
Sbjct: 127 E--LLREESRNPTKINSLSK 144
>gi|390345308|ref|XP_790548.3| PREDICTED: LIM homeobox transcription factor 1-beta-like
[Strongylocentrotus purpuratus]
Length = 387
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 80/141 (56%), Gaps = 5/141 (3%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
T++ S G G + CA C + I +R+L+K +D WHE CL+C C RL
Sbjct: 11 TSENGSAAAGLATNGTRPSKEMCAGCQRAIDDRYLMKVMDHCWHEQCLQCSVCRIRLSH- 69
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
+ + + + CK DY +LFGT C AC + IP+ E+VMRA +NVYHL CF C C+
Sbjct: 70 --SCFARDRKLYCKLDYEKLFGTK--CNACFQSIPSSELVMRALSNVYHLRCFTCVTCDQ 125
Query: 152 RFCVGDRFYLCDNKILCEYDY 172
+ GD F L +N++ C+ DY
Sbjct: 126 QLKKGDEFVLKENRLYCKEDY 146
>gi|148232304|ref|NP_001081623.1| LIM/homeobox protein Lhx3 [Xenopus laevis]
gi|547856|sp|P36200.1|LHX3_XENLA RecName: Full=LIM/homeobox protein Lhx3; Short=LIM homeobox protein
3; AltName: Full=Homeobox protein LIM-3; Short=xLIM-3
gi|407072|emb|CAA80402.1| Xlim-3 [Xenopus laevis]
gi|213623314|gb|AAI69580.1| Xlim-3 protein [Xenopus laevis]
Length = 395
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 76/128 (59%), Gaps = 6/128 (4%)
Query: 47 ASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKR 106
S + +CA C + I +RF+LK LD WH CLKC C +L E + + + + CK
Sbjct: 21 GSPEIPQCAGCNQHIVDRFILKVLDRHWHSKCLKCNDCQIQLAE---KCFSRGDSVYCKD 77
Query: 107 DYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNK 165
D+ + FGT CAAC + IP ++V RA+ VYHL CFAC C + GD FYL D++
Sbjct: 78 DFFKRFGTK--CAACQQGIPPTQVVRRAQEFVYHLHCFACIVCKRQLATGDEFYLMEDSR 135
Query: 166 ILCEYDYE 173
++C+ DYE
Sbjct: 136 LVCKADYE 143
>gi|72535130|ref|NP_001025506.1| LIM/homeobox protein Lhx3 [Gallus gallus]
gi|1708828|sp|P53412.1|LHX3_CHICK RecName: Full=LIM/homeobox protein Lhx3; Short=LIM homeobox protein
3; AltName: Full=Homeobox protein LIM-3
gi|531185|gb|AAA62174.1| amino acid feature: LIM1, bp 82 .. 225; amino acid feature: LIM2,
bp 259 .. 414; amino acid feature: homeodomain, bp 457
.. 636 [Gallus gallus]
Length = 395
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 74/121 (61%), Gaps = 6/121 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RF+LK LD WH CLKC C +L E + + + + CK D+ + FG
Sbjct: 28 CAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQTQLAE---KCFSRGDGVYCKEDFFKRFG 84
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDY 172
T CAAC + IP ++V RA++ VYHL CFAC C + GD FYL D++++C+ DY
Sbjct: 85 TK--CAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEFYLMEDSRLVCKADY 142
Query: 173 E 173
E
Sbjct: 143 E 143
>gi|380806861|gb|AFE75306.1| rhombotin-1, partial [Macaca mulatta]
Length = 76
Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 52/72 (72%), Positives = 59/72 (81%)
Query: 43 LAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLI 102
L+ G K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLI
Sbjct: 5 LSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLI 64
Query: 103 LCKRDYLRLFGT 114
LC+RDYLRLFGT
Sbjct: 65 LCRRDYLRLFGT 76
>gi|345487077|ref|XP_001599660.2| PREDICTED: hypothetical protein LOC100114734 [Nasonia vitripennis]
Length = 644
Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats.
Identities = 53/121 (43%), Positives = 72/121 (59%), Gaps = 3/121 (2%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRL-GEVGSTLYQKANLILCKRDYLRLF 112
CA CG RI++RF L+A+D WH CL+C C L GEV T + + I CK+DY R+F
Sbjct: 239 CAGCGLRISDRFYLQAVDRRWHASCLQCSHCRQGLDGEV--TCFSREGNIYCKKDYYRMF 296
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
G+ CA C I A E+VMRA+ V+H+ CF+C C+ GD F + + +LC Y
Sbjct: 297 GSMKRCARCQAAILASELVMRARELVFHVRCFSCAACSVPLTKGDHFGMREGAVLCRLHY 356
Query: 173 E 173
E
Sbjct: 357 E 357
>gi|236201759|dbj|BAH58772.1| LIM homeodomain protein Hr-Lhx3 b-form [Halocynthia roretzi]
Length = 611
Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 75/125 (60%), Gaps = 6/125 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +C C RI +RF+LK D WH LKC C +L E + + NL+ CK D+ +
Sbjct: 198 IPKCTGCEHRIFDRFILKVQDKPWHSQGLKCNDCSAQLSE---KCFSRGNLVFCKDDFFK 254
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
FGT C AC IP E++ RA++NVYHLE F C C+ + GD+FYL DN+++C+
Sbjct: 255 RFGTK--CTACGHGIPPTEVIRRAQDNVYHLEGFCCFLCHEKMGTGDQFYLLEDNRLVCK 312
Query: 170 YDYEE 174
DYE+
Sbjct: 313 KDYEQ 317
>gi|114627514|ref|XP_001171072.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Pan troglodytes]
Length = 397
Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 76/129 (58%), Gaps = 9/129 (6%)
Query: 49 GGLKE---CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCK 105
GG +E CA C + I +RF+LKALD WH CLKC C L E + + + CK
Sbjct: 23 GGTREIPLCAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCK 79
Query: 106 RDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DN 164
D+ R FGT CAAC IP ++V RA++ VYHL CFAC C + GD FYL D+
Sbjct: 80 DDFFRRFGTK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDS 137
Query: 165 KILCEYDYE 173
+++C+ DYE
Sbjct: 138 RLVCKADYE 146
>gi|410903462|ref|XP_003965212.1| PREDICTED: LIM/homeobox protein Lhx3-like isoform 2 [Takifugu
rubripes]
Length = 406
Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 74/121 (61%), Gaps = 6/121 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RF+LK LD WH CLKC C +L E + + + + CK D+ + FG
Sbjct: 35 CAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQAQLAE---KCFSRGDSVYCKEDFFKRFG 91
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDY 172
T CAAC + IP ++V RA++ VYHL CFAC C + GD +YL D++++C+ DY
Sbjct: 92 TK--CAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEYYLMEDSRLVCKTDY 149
Query: 173 E 173
E
Sbjct: 150 E 150
>gi|397492166|ref|XP_003816999.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Pan paniscus]
Length = 401
Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 76/129 (58%), Gaps = 9/129 (6%)
Query: 49 GGLKE---CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCK 105
GG +E CA C + I +RF+LKALD WH CLKC C L E + + + CK
Sbjct: 23 GGTREIPLCAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCK 79
Query: 106 RDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DN 164
D+ R FGT CAAC IP ++V RA++ VYHL CFAC C + GD FYL D+
Sbjct: 80 DDFFRRFGTK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDS 137
Query: 165 KILCEYDYE 173
+++C+ DYE
Sbjct: 138 RLVCKADYE 146
>gi|410903464|ref|XP_003965213.1| PREDICTED: LIM/homeobox protein Lhx3-like isoform 3 [Takifugu
rubripes]
Length = 390
Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 74/121 (61%), Gaps = 6/121 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RF+LK LD WH CLKC C +L E + + + + CK D+ + FG
Sbjct: 19 CAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQAQLAE---KCFSRGDSVYCKEDFFKRFG 75
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDY 172
T CAAC + IP ++V RA++ VYHL CFAC C + GD +YL D++++C+ DY
Sbjct: 76 TK--CAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEYYLMEDSRLVCKTDY 133
Query: 173 E 173
E
Sbjct: 134 E 134
>gi|410903460|ref|XP_003965211.1| PREDICTED: LIM/homeobox protein Lhx3-like isoform 1 [Takifugu
rubripes]
Length = 399
Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 74/121 (61%), Gaps = 6/121 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RF+LK LD WH CLKC C +L E + + + + CK D+ + FG
Sbjct: 28 CAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQAQLAE---KCFSRGDSVYCKEDFFKRFG 84
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDY 172
T CAAC + IP ++V RA++ VYHL CFAC C + GD +YL D++++C+ DY
Sbjct: 85 TK--CAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEYYLMEDSRLVCKTDY 142
Query: 173 E 173
E
Sbjct: 143 E 143
>gi|47225657|emb|CAG08000.1| unnamed protein product [Tetraodon nigroviridis]
Length = 363
Score = 109 bits (273), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 75/124 (60%), Gaps = 6/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +CA C + I ++F+LK LD WH CLKC C L + + +A + CK D+ +
Sbjct: 2 IPQCAGCSQHILDKFILKVLDRHWHSKCLKCADCQTPLAD---KCFSRAGSVYCKEDFFK 58
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
FGT CA+C K IP ++V +A++ VYHL CFAC C+ + GD FYL D +++C+
Sbjct: 59 RFGTK--CASCQKGIPPMQVVRKAQDFVYHLHCFACIMCSRQLATGDEFYLMEDGRLVCK 116
Query: 170 YDYE 173
DYE
Sbjct: 117 VDYE 120
>gi|363736513|ref|XP_001235592.2| PREDICTED: LIM/homeobox protein Lhx4 [Gallus gallus]
Length = 374
Score = 109 bits (272), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 79/133 (59%), Gaps = 6/133 (4%)
Query: 42 ALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANL 101
A+ GG + +CA C + I ++F+LK LD WH CLKC C +L E + +A
Sbjct: 4 AVRGGPYRQIPQCAGCSQHILDKFILKVLDRHWHSSCLKCADCQMQLAE---RCFARAGS 60
Query: 102 ILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYL 161
+ CK D+ + FGT C AC + IP ++V +A++ VYHL CFAC C+ + GD FYL
Sbjct: 61 VYCKEDFFKRFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICSRQLATGDEFYL 118
Query: 162 C-DNKILCEYDYE 173
D +++C+ DYE
Sbjct: 119 MEDGRLVCKEDYE 131
>gi|126302627|ref|XP_001366305.1| PREDICTED: LIM/homeobox protein Lhx3-like isoform 2 [Monodelphis
domestica]
Length = 403
Score = 109 bits (272), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 73/121 (60%), Gaps = 6/121 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RF+LK LD WH CLKC C L E + + + + CK D+ + FG
Sbjct: 36 CAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQTPLAE---KCFSRGDGVYCKEDFFKRFG 92
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDY 172
T CAAC + IP ++V RA++ VYHL CF+C C + GD FYL D++++C+ DY
Sbjct: 93 TK--CAACQQGIPPTQVVRRAQDFVYHLHCFSCVVCKRQLATGDEFYLMEDSRLVCKADY 150
Query: 173 E 173
E
Sbjct: 151 E 151
>gi|395506422|ref|XP_003757531.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Sarcophilus
harrisii]
Length = 401
Score = 109 bits (272), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 73/121 (60%), Gaps = 6/121 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RF+LK LD WH CLKC C L E + + + + CK D+ + FG
Sbjct: 34 CAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQTPLAE---KCFSRGDGVYCKEDFFKRFG 90
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDY 172
T CAAC + IP ++V RA++ VYHL CF+C C + GD FYL D++++C+ DY
Sbjct: 91 TK--CAACQQGIPPTQVVRRAQDFVYHLHCFSCVVCKRQLATGDEFYLMEDSRLVCKADY 148
Query: 173 E 173
E
Sbjct: 149 E 149
>gi|126302625|ref|XP_001366249.1| PREDICTED: LIM/homeobox protein Lhx3-like isoform 1 [Monodelphis
domestica]
Length = 401
Score = 109 bits (272), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 73/121 (60%), Gaps = 6/121 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RF+LK LD WH CLKC C L E + + + + CK D+ + FG
Sbjct: 34 CAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQTPLAE---KCFSRGDGVYCKEDFFKRFG 90
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDY 172
T CAAC + IP ++V RA++ VYHL CF+C C + GD FYL D++++C+ DY
Sbjct: 91 TK--CAACQQGIPPTQVVRRAQDFVYHLHCFSCVVCKRQLATGDEFYLMEDSRLVCKADY 148
Query: 173 E 173
E
Sbjct: 149 E 149
>gi|395506420|ref|XP_003757530.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Sarcophilus
harrisii]
Length = 403
Score = 109 bits (272), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 73/121 (60%), Gaps = 6/121 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RF+LK LD WH CLKC C L E + + + + CK D+ + FG
Sbjct: 36 CAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQTPLAE---KCFSRGDGVYCKEDFFKRFG 92
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDY 172
T CAAC + IP ++V RA++ VYHL CF+C C + GD FYL D++++C+ DY
Sbjct: 93 TK--CAACQQGIPPTQVVRRAQDFVYHLHCFSCVVCKRQLATGDEFYLMEDSRLVCKADY 150
Query: 173 E 173
E
Sbjct: 151 E 151
>gi|332833327|ref|XP_003312450.1| PREDICTED: LIM/homeobox protein Lhx3 [Pan troglodytes]
Length = 396
Score = 109 bits (272), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 75/130 (57%), Gaps = 6/130 (4%)
Query: 45 GGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILC 104
G + + CA C + I +RF+LKALD WH CLKC C L E + + + C
Sbjct: 21 GAPAPEIPLCAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYC 77
Query: 105 KRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-D 163
K D+ R FGT CAAC IP ++V RA++ VYHL CFAC C + GD FYL D
Sbjct: 78 KDDFFRRFGTK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMED 135
Query: 164 NKILCEYDYE 173
++++C+ DYE
Sbjct: 136 SRLVCKADYE 145
>gi|109109777|ref|XP_001096075.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Macaca mulatta]
Length = 397
Score = 108 bits (271), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 91/177 (51%), Gaps = 31/177 (17%)
Query: 49 GGLKE---CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCK 105
GG +E CA C + I +RF+LKALD WH CLKC C L E + + + CK
Sbjct: 23 GGTREIPLCAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCK 79
Query: 106 RDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DN 164
D+ + FGT CAAC IP ++V RA++ VYHL CFAC C + GD FYL D+
Sbjct: 80 DDFFKRFGTK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDS 137
Query: 165 KILCEYDYE---ERQVFANI-----------------AYN--PSSLAHLRRQVTLQV 199
+++C+ DYE +R+ A AYN P H+R Q++ +
Sbjct: 138 RLVCKADYETAKQREAEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSET 194
>gi|410921498|ref|XP_003974220.1| PREDICTED: LIM/homeobox protein Lhx4-like [Takifugu rubripes]
Length = 389
Score = 108 bits (271), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 75/124 (60%), Gaps = 6/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +CA C + I ++F+LK LD WH CLKC C L + + +A + CK D+ +
Sbjct: 28 IPQCAGCSQHILDKFILKVLDRHWHSKCLKCADCQTPLAD---KCFSRAGSVYCKEDFFK 84
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
FGT CA+C + IP ++V +A++ VYHL CFAC C+ + GD FYL D +++C+
Sbjct: 85 RFGTK--CASCQQGIPPMQVVRKAQDFVYHLHCFACIMCSRQLATGDEFYLMEDGRLVCK 142
Query: 170 YDYE 173
DYE
Sbjct: 143 VDYE 146
>gi|348508944|ref|XP_003442012.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like
[Oreochromis niloticus]
Length = 368
Score = 108 bits (271), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 58/139 (41%), Positives = 80/139 (57%), Gaps = 6/139 (4%)
Query: 49 GGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDY 108
GG + CA C I +RFLL+ + WHE C+KC C L + T Y + L+ CK DY
Sbjct: 26 GGGEVCAGCESPIADRFLLRVNERSWHETCVKCAVC---LSALTGTCYSRDRLLYCKHDY 82
Query: 109 LRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILC 168
+LF C+AC +VI E++MR VYHL CF+C +C R GD F L + ++LC
Sbjct: 83 EKLF--VRKCSACLQVIGRSELIMRVLGQVYHLGCFSCCECERRLQRGDEFVLKEGQLLC 140
Query: 169 EYDYE-ERQVFANIAYNPS 186
DYE ER++ A I+ P+
Sbjct: 141 RMDYEKEREMLAAISPTPT 159
>gi|403301480|ref|XP_003941417.1| PREDICTED: LIM/homeobox protein Lhx3 [Saimiri boliviensis
boliviensis]
Length = 397
Score = 108 bits (271), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 76/129 (58%), Gaps = 9/129 (6%)
Query: 49 GGLKE---CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCK 105
GG +E CA C + I +RF+LKALD WH CLKC C L E + + + CK
Sbjct: 23 GGTREIPLCAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCK 79
Query: 106 RDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DN 164
D+ + FGT CAAC IP ++V RA++ VYHL CFAC C + GD FYL D+
Sbjct: 80 DDFFKRFGTK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDS 137
Query: 165 KILCEYDYE 173
+++C+ DYE
Sbjct: 138 RLVCKADYE 146
>gi|301778549|ref|XP_002924694.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx3-like
[Ailuropoda melanoleuca]
Length = 365
Score = 108 bits (271), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 81/145 (55%), Gaps = 9/145 (6%)
Query: 49 GGLKE---CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCK 105
GG +E CA C + I +RF+LKALD WH CLKC C L E + + + CK
Sbjct: 26 GGTQEIPLCAGCDQHILDRFILKALDRHWHSKCLKCTDCHAPLAE---RCFSRGESVYCK 82
Query: 106 RDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DN 164
D+ + FGT CAAC IP ++V RA++ VYHL CFAC C + GD FYL D+
Sbjct: 83 DDFFKRFGTK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDS 140
Query: 165 KILCEYDYEERQVFANIAYNPSSLA 189
+++C+ DYE + P+ L+
Sbjct: 141 RLVCKADYETAKQRGQWGSPPTLLS 165
>gi|296191169|ref|XP_002743508.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Callithrix jacchus]
Length = 397
Score = 108 bits (271), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 91/177 (51%), Gaps = 31/177 (17%)
Query: 49 GGLKE---CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCK 105
GG +E CA C + I +RF+LKALD WH CLKC C L E + + + CK
Sbjct: 23 GGTREIPLCAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCK 79
Query: 106 RDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DN 164
D+ + FGT CAAC IP ++V RA++ VYHL CFAC C + GD FYL D+
Sbjct: 80 DDFFKRFGTK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDS 137
Query: 165 KILCEYDYE---ERQVFANI-----------------AYN--PSSLAHLRRQVTLQV 199
+++C+ DYE +R+ A AYN P H+R Q++ +
Sbjct: 138 RLVCKADYETAKQREAEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSET 194
>gi|402896085|ref|XP_003911138.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Papio anubis]
Length = 397
Score = 108 bits (271), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 91/177 (51%), Gaps = 31/177 (17%)
Query: 49 GGLKE---CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCK 105
GG +E CA C + I +RF+LKALD WH CLKC C L E + + + CK
Sbjct: 23 GGTREIPLCAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCK 79
Query: 106 RDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DN 164
D+ + FGT CAAC IP ++V RA++ VYHL CFAC C + GD FYL D+
Sbjct: 80 DDFFKRFGTK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDS 137
Query: 165 KILCEYDYE---ERQVFANI-----------------AYN--PSSLAHLRRQVTLQV 199
+++C+ DYE +R+ A AYN P H+R Q++ +
Sbjct: 138 RLVCKADYETAKQREAEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSET 194
>gi|397492168|ref|XP_003817000.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Pan paniscus]
Length = 390
Score = 108 bits (271), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 75/130 (57%), Gaps = 6/130 (4%)
Query: 45 GGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILC 104
G + + CA C + I +RF+LKALD WH CLKC C L E + + + C
Sbjct: 11 GAPAPEIPLCAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYC 67
Query: 105 KRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-D 163
K D+ R FGT CAAC IP ++V RA++ VYHL CFAC C + GD FYL D
Sbjct: 68 KDDFFRRFGTK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMED 125
Query: 164 NKILCEYDYE 173
++++C+ DYE
Sbjct: 126 SRLVCKADYE 135
>gi|30023847|ref|NP_835258.1| LIM/homeobox protein Lhx3 isoform a [Homo sapiens]
gi|12643415|sp|Q9UBR4.2|LHX3_HUMAN RecName: Full=LIM/homeobox protein Lhx3; Short=LIM homeobox protein
3
gi|7110143|gb|AAF36808.1|AF156888_1 LIM homeobox protein 3 isoform a [Homo sapiens]
gi|16565927|gb|AAL26314.1| LIM homeobox protein 3 [Homo sapiens]
gi|119608612|gb|EAW88206.1| LIM homeobox 3, isoform CRA_b [Homo sapiens]
gi|326205254|dbj|BAJ84009.1| LIM/homeobox protein Lhx3 [Homo sapiens]
gi|326205256|dbj|BAJ84010.1| LIM/homeobox protein Lhx3 [Homo sapiens]
gi|326205264|dbj|BAJ84014.1| LIM/homeobox protein Lhx3 [Homo sapiens]
Length = 397
Score = 108 bits (271), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 91/177 (51%), Gaps = 31/177 (17%)
Query: 49 GGLKE---CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCK 105
GG +E CA C + I +RF+LKALD WH CLKC C L E + + + CK
Sbjct: 23 GGTREIPLCAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCK 79
Query: 106 RDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DN 164
D+ + FGT CAAC IP ++V RA++ VYHL CFAC C + GD FYL D+
Sbjct: 80 DDFFKRFGTK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDS 137
Query: 165 KILCEYDYE---ERQVFANI-----------------AYN--PSSLAHLRRQVTLQV 199
+++C+ DYE +R+ A AYN P H+R Q++ +
Sbjct: 138 RLVCKADYETAKQREAEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSET 194
>gi|334321803|ref|XP_001374523.2| PREDICTED: LIM/homeobox protein Lhx4-like [Monodelphis domestica]
Length = 391
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 77/128 (60%), Gaps = 6/128 (4%)
Query: 47 ASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKR 106
AS + +CA C + I ++F+LK LD WH CLKC C +L + + +A + CK
Sbjct: 24 ASSEIPQCAGCNQHILDKFILKVLDRHWHGSCLKCADCQMQLAD---RCFSRAGSVYCKE 80
Query: 107 DYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNK 165
D+ + FGT C AC + IP ++V +A++ VYHL CFAC CN + GD FYL D +
Sbjct: 81 DFFKRFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGR 138
Query: 166 ILCEYDYE 173
++C+ DYE
Sbjct: 139 LVCKEDYE 146
>gi|114627512|ref|XP_001171089.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Pan troglodytes]
Length = 402
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 72/121 (59%), Gaps = 6/121 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RF+LKALD WH CLKC C L E + + + CK D+ R FG
Sbjct: 36 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFRRFG 92
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDY 172
T CAAC IP ++V RA++ VYHL CFAC C + GD FYL D++++C+ DY
Sbjct: 93 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 150
Query: 173 E 173
E
Sbjct: 151 E 151
>gi|157412000|gb|ABV54626.1| Lim homeobox protein 3 splice variant [Salmo salar]
Length = 379
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 74/121 (61%), Gaps = 6/121 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RF+LK LD WH CLKC C +L + + + + + CK D+ + FG
Sbjct: 12 CAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQSQLAD---KCFSRGDSVYCKEDFFKRFG 68
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDY 172
T CAAC + IP ++V RA++ VYHL CFAC C + GD +YL D++++C+ DY
Sbjct: 69 TK--CAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEYYLMEDSRLVCKADY 126
Query: 173 E 173
E
Sbjct: 127 E 127
>gi|391327822|ref|XP_003738394.1| PREDICTED: LIM/homeobox protein Lhx3-like [Metaseiulus
occidentalis]
Length = 408
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 83/152 (54%), Gaps = 6/152 (3%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +CA CG I +RF+LK L+ WH CLKC C L + + +A + CK D+ +
Sbjct: 51 IPKCAGCGDIILDRFILKVLERPWHSKCLKCSDCQAPLA---NKCFARAGHLYCKDDFFK 107
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
+GT CA C + IP ++V RA+ NVYHL CF+C C + GD FYL DNK++C+
Sbjct: 108 RYGTK--CAGCEQGIPPTQVVRRAQENVYHLACFSCILCKRQLNTGDEFYLMEDNKLVCK 165
Query: 170 YDYEERQVFANIAYNPSSLAHLRRQVTLQVLW 201
DYE + P + ++ TL+ +
Sbjct: 166 ADYEAAKAREGSTKRPRTTITAKQLETLKSAY 197
>gi|397492170|ref|XP_003817001.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 3 [Pan paniscus]
Length = 377
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 72/121 (59%), Gaps = 6/121 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RF+LKALD WH CLKC C L E + + + CK D+ R FG
Sbjct: 7 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFRRFG 63
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDY 172
T CAAC IP ++V RA++ VYHL CFAC C + GD FYL D++++C+ DY
Sbjct: 64 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 121
Query: 173 E 173
E
Sbjct: 122 E 122
>gi|190336903|gb|AAI62627.1| LIM homeobox 3 [Danio rerio]
Length = 398
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 77/128 (60%), Gaps = 6/128 (4%)
Query: 47 ASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKR 106
+S + CA C + I +RF+LK LD WH CLKC C +L + + + + + CK
Sbjct: 21 SSQDIPVCAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQSQLAD---KCFSRGDSVYCKD 77
Query: 107 DYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNK 165
D+ + FGT CAAC + IP ++V RA++ VYHL CFAC C + GD +YL D++
Sbjct: 78 DFFKRFGTK--CAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEYYLMEDSR 135
Query: 166 ILCEYDYE 173
++C+ DYE
Sbjct: 136 LVCKADYE 143
>gi|211971017|ref|NP_001130018.1| LIM/homeobox protein Lhx3 [Salmo salar]
gi|157412002|gb|ABV54627.1| Lim homeobox protein 3 [Salmo salar]
Length = 395
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 74/121 (61%), Gaps = 6/121 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RF+LK LD WH CLKC C +L + + + + + CK D+ + FG
Sbjct: 28 CAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQSQLAD---KCFSRGDSVYCKEDFFKRFG 84
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDY 172
T CAAC + IP ++V RA++ VYHL CFAC C + GD +YL D++++C+ DY
Sbjct: 85 TK--CAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEYYLMEDSRLVCKADY 142
Query: 173 E 173
E
Sbjct: 143 E 143
>gi|18858975|ref|NP_571283.1| LIM/homeobox protein Lhx3 [Danio rerio]
gi|2497671|sp|Q90421.1|LHX3_DANRE RecName: Full=LIM/homeobox protein Lhx3; Short=LIM homeobox protein
3; AltName: Full=Homeobox protein LIM-3
gi|1000342|gb|AAA76714.1| LIM homeobox protein [Danio rerio]
Length = 398
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 77/128 (60%), Gaps = 6/128 (4%)
Query: 47 ASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKR 106
+S + CA C + I +RF+LK LD WH CLKC C +L + + + + + CK
Sbjct: 21 SSQDIPVCAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQSQLAD---KCFSRGDSVYCKD 77
Query: 107 DYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNK 165
D+ + FGT CAAC + IP ++V RA++ VYHL CFAC C + GD +YL D++
Sbjct: 78 DFFKRFGTK--CAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEYYLMEDSR 135
Query: 166 ILCEYDYE 173
++C+ DYE
Sbjct: 136 LVCKADYE 143
>gi|432856246|ref|XP_004068425.1| PREDICTED: LIM/homeobox protein Lhx4-like [Oryzias latipes]
Length = 389
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 75/124 (60%), Gaps = 6/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +CA C + I ++F+LK LD WH CLKC C L + + +A + CK D+ +
Sbjct: 28 IPQCAGCSQHILDKFILKVLDRHWHSKCLKCADCQTPLAD---KCFSRAGSVYCKEDFFK 84
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
FGT CA+C + IP ++V +A++ VYHL CFAC C+ + GD FYL D +++C+
Sbjct: 85 RFGTK--CASCQQGIPPTQVVRKAQDFVYHLHCFACIMCSRQLATGDEFYLMEDGRLVCK 142
Query: 170 YDYE 173
DYE
Sbjct: 143 VDYE 146
>gi|395824959|ref|XP_003785717.1| PREDICTED: LIM/homeobox protein Lhx4 [Otolemur garnettii]
Length = 390
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 75/124 (60%), Gaps = 6/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +CA C + I ++F+LK LD WH CLKC C +L + + +A + CK D+ +
Sbjct: 27 IPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFK 83
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
FGT C AC + IP ++V +A++ VYHL CFAC CN + GD FYL D +++C+
Sbjct: 84 RFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACVICNRQLATGDEFYLMEDGRLVCK 141
Query: 170 YDYE 173
DYE
Sbjct: 142 EDYE 145
>gi|344308352|ref|XP_003422841.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Loxodonta africana]
Length = 403
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 87/169 (51%), Gaps = 28/169 (16%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RF+LKALD WH CLKC C L E + + + C+ D+ R FG
Sbjct: 36 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCREDFFRRFG 92
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDY 172
T CAAC IP ++V RA++ VYHL CFAC C + GD FYL D++++C+ DY
Sbjct: 93 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 150
Query: 173 E---ERQVFANI-----------------AYN--PSSLAHLRRQVTLQV 199
E +R+ A AYN P H+R Q++ +
Sbjct: 151 ETAKQREAEATAKRPRTTITAKQLETLKSAYNNSPKPARHVREQLSSET 199
>gi|344308350|ref|XP_003422840.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Loxodonta africana]
Length = 401
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 87/169 (51%), Gaps = 28/169 (16%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RF+LKALD WH CLKC C L E + + + C+ D+ R FG
Sbjct: 34 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCREDFFRRFG 90
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDY 172
T CAAC IP ++V RA++ VYHL CFAC C + GD FYL D++++C+ DY
Sbjct: 91 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 148
Query: 173 E---ERQVFANI-----------------AYN--PSSLAHLRRQVTLQV 199
E +R+ A AYN P H+R Q++ +
Sbjct: 149 ETAKQREAEATAKRPRTTITAKQLETLKSAYNNSPKPARHVREQLSSET 197
>gi|348504454|ref|XP_003439776.1| PREDICTED: LIM/homeobox protein Lhx4-like [Oreochromis niloticus]
Length = 387
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 75/124 (60%), Gaps = 6/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +CA C + I ++F+LK LD WH CLKC C L + + +A + CK D+ +
Sbjct: 28 IPQCAGCSQHILDKFILKVLDRHWHSKCLKCADCQTPLAD---KCFSRAGSVYCKEDFFK 84
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
FGT CA+C + IP ++V +A++ VYHL CFAC C+ + GD FYL D +++C+
Sbjct: 85 RFGTK--CASCQQGIPPTQVVRKAQDFVYHLHCFACIMCSRQLATGDEFYLMEDGRLVCK 142
Query: 170 YDYE 173
DYE
Sbjct: 143 VDYE 146
>gi|335295820|ref|XP_003357609.1| PREDICTED: LIM/homeobox protein Lhx4-like [Sus scrofa]
Length = 390
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 75/124 (60%), Gaps = 6/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +CA C + I ++F+LK LD WH CLKC C +L + + +A + CK D+ +
Sbjct: 27 IPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFK 83
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
FGT C AC + IP ++V +A++ VYHL CFAC CN + GD FYL D +++C+
Sbjct: 84 RFGTK--CTACQQGIPPTQVVRKAQDFVYHLPCFACIICNRQLATGDEFYLMEDGRLVCK 141
Query: 170 YDYE 173
DYE
Sbjct: 142 EDYE 145
>gi|397508667|ref|XP_003824769.1| PREDICTED: LIM/homeobox protein Lhx4 [Pan paniscus]
gi|410034179|ref|XP_524984.3| PREDICTED: LIM/homeobox protein Lhx4 [Pan troglodytes]
Length = 466
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 75/124 (60%), Gaps = 6/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +CA C + I ++F+LK LD WH CLKC C +L + + +A + CK D+ +
Sbjct: 103 IPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFK 159
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
FGT C AC + IP ++V +A++ VYHL CFAC CN + GD FYL D +++C+
Sbjct: 160 RFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCK 217
Query: 170 YDYE 173
DYE
Sbjct: 218 EDYE 221
>gi|119611484|gb|EAW91078.1| LIM homeobox 4 [Homo sapiens]
Length = 390
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 75/124 (60%), Gaps = 6/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +CA C + I ++F+LK LD WH CLKC C +L + + +A + CK D+ +
Sbjct: 27 IPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFK 83
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
FGT C AC + IP ++V +A++ VYHL CFAC CN + GD FYL D +++C+
Sbjct: 84 RFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCK 141
Query: 170 YDYE 173
DYE
Sbjct: 142 EDYE 145
>gi|18026224|gb|AAL07260.1| LIM homeodomain protein [Homo sapiens]
Length = 390
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 75/124 (60%), Gaps = 6/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +CA C + I ++F+LK LD WH CLKC C +L + + +A + CK D+ +
Sbjct: 27 IPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFK 83
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
FGT C AC + IP ++V +A++ VYHL CFAC CN + GD FYL D +++C+
Sbjct: 84 RFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCK 141
Query: 170 YDYE 173
DYE
Sbjct: 142 EDYE 145
>gi|15375314|ref|NP_203129.1| LIM/homeobox protein Lhx4 [Homo sapiens]
gi|209572644|sp|Q969G2.2|LHX4_HUMAN RecName: Full=LIM/homeobox protein Lhx4; Short=LIM homeobox protein
4
gi|14599448|gb|AAK70923.1|AF179849_1 LIM homeobox protein 4 [Homo sapiens]
gi|22094433|gb|AAM91896.1|AF405430_1 LIM homeobox protein 4 [Homo sapiens]
gi|15079940|gb|AAH11759.1| LIM homeobox 4 [Homo sapiens]
gi|123988108|gb|ABM83830.1| LIM homeobox 4 [synthetic construct]
gi|123999145|gb|ABM87154.1| LIM homeobox 4 [synthetic construct]
gi|261861646|dbj|BAI47345.1| LIM homeobox 4 [synthetic construct]
Length = 390
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 75/124 (60%), Gaps = 6/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +CA C + I ++F+LK LD WH CLKC C +L + + +A + CK D+ +
Sbjct: 27 IPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFK 83
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
FGT C AC + IP ++V +A++ VYHL CFAC CN + GD FYL D +++C+
Sbjct: 84 RFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCK 141
Query: 170 YDYE 173
DYE
Sbjct: 142 EDYE 145
>gi|190684642|ref|NP_034842.2| LIM/homeobox protein Lhx4 [Mus musculus]
gi|209572773|sp|P53776.4|LHX4_MOUSE RecName: Full=LIM/homeobox protein Lhx4; Short=LIM homeobox protein
4
gi|148707456|gb|EDL39403.1| LIM homeobox protein 4, isoform CRA_b [Mus musculus]
Length = 390
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 75/124 (60%), Gaps = 6/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +CA C + I ++F+LK LD WH CLKC C +L + + +A + CK D+ +
Sbjct: 27 IPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFK 83
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
FGT C AC + IP ++V +A++ VYHL CFAC CN + GD FYL D +++C+
Sbjct: 84 RFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCK 141
Query: 170 YDYE 173
DYE
Sbjct: 142 EDYE 145
>gi|402857943|ref|XP_003893495.1| PREDICTED: LIM/homeobox protein Lhx4 [Papio anubis]
gi|355558975|gb|EHH15755.1| hypothetical protein EGK_01889 [Macaca mulatta]
Length = 390
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 75/124 (60%), Gaps = 6/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +CA C + I ++F+LK LD WH CLKC C +L + + +A + CK D+ +
Sbjct: 27 IPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFK 83
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
FGT C AC + IP ++V +A++ VYHL CFAC CN + GD FYL D +++C+
Sbjct: 84 RFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCK 141
Query: 170 YDYE 173
DYE
Sbjct: 142 EDYE 145
>gi|297662584|ref|XP_002809779.1| PREDICTED: LIM/homeobox protein Lhx4 [Pongo abelii]
Length = 390
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 75/124 (60%), Gaps = 6/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +CA C + I ++F+LK LD WH CLKC C +L + + +A + CK D+ +
Sbjct: 27 IPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFK 83
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
FGT C AC + IP ++V +A++ VYHL CFAC CN + GD FYL D +++C+
Sbjct: 84 RFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCK 141
Query: 170 YDYE 173
DYE
Sbjct: 142 EDYE 145
>gi|194210370|ref|XP_001914860.1| PREDICTED: LIM/homeobox protein Lhx4-like [Equus caballus]
Length = 390
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 75/124 (60%), Gaps = 6/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +CA C + I ++F+LK LD WH CLKC C +L + + +A + CK D+ +
Sbjct: 27 IPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFK 83
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
FGT C AC + IP ++V +A++ VYHL CFAC CN + GD FYL D +++C+
Sbjct: 84 RFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCK 141
Query: 170 YDYE 173
DYE
Sbjct: 142 EDYE 145
>gi|73960401|ref|XP_547420.2| PREDICTED: LIM/homeobox protein Lhx4 isoform 1 [Canis lupus
familiaris]
Length = 390
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 75/124 (60%), Gaps = 6/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +CA C + I ++F+LK LD WH CLKC C +L + + +A + CK D+ +
Sbjct: 27 IPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFK 83
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
FGT C AC + IP ++V +A++ VYHL CFAC CN + GD FYL D +++C+
Sbjct: 84 RFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCK 141
Query: 170 YDYE 173
DYE
Sbjct: 142 EDYE 145
>gi|29437129|gb|AAH49834.1| Lhx4 protein [Mus musculus]
Length = 390
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 75/124 (60%), Gaps = 6/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +CA C + I ++F+LK LD WH CLKC C +L + + +A + CK D+ +
Sbjct: 27 IPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFK 83
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
FGT C AC + IP ++V +A++ VYHL CFAC CN + GD FYL D +++C+
Sbjct: 84 RFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCK 141
Query: 170 YDYE 173
DYE
Sbjct: 142 EDYE 145
>gi|300795912|ref|NP_001179714.1| LIM/homeobox protein Lhx4 [Bos taurus]
gi|296479119|tpg|DAA21234.1| TPA: LIM homeobox 4 [Bos taurus]
gi|440901216|gb|ELR52198.1| LIM/homeobox protein Lhx4 [Bos grunniens mutus]
Length = 390
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 75/124 (60%), Gaps = 6/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +CA C + I ++F+LK LD WH CLKC C +L + + +A + CK D+ +
Sbjct: 27 IPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFK 83
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
FGT C AC + IP ++V +A++ VYHL CFAC CN + GD FYL D +++C+
Sbjct: 84 RFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCK 141
Query: 170 YDYE 173
DYE
Sbjct: 142 EDYE 145
>gi|432115998|gb|ELK37137.1| LIM/homeobox protein Lhx4 [Myotis davidii]
Length = 389
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 75/124 (60%), Gaps = 6/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +CA C + I ++F+LK LD WH CLKC C +L + + +A + CK D+ +
Sbjct: 26 IPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFK 82
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
FGT C AC + IP ++V +A++ VYHL CFAC CN + GD FYL D +++C+
Sbjct: 83 RFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCK 140
Query: 170 YDYE 173
DYE
Sbjct: 141 EDYE 144
>gi|426332930|ref|XP_004028045.1| PREDICTED: LIM/homeobox protein Lhx4 [Gorilla gorilla gorilla]
Length = 390
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 75/124 (60%), Gaps = 6/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +CA C + I ++F+LK LD WH CLKC C +L + + +A + CK D+ +
Sbjct: 27 IPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFK 83
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
FGT C AC + IP ++V +A++ VYHL CFAC CN + GD FYL D +++C+
Sbjct: 84 RFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCK 141
Query: 170 YDYE 173
DYE
Sbjct: 142 EDYE 145
>gi|410986072|ref|XP_003999336.1| PREDICTED: LIM/homeobox protein Lhx4 [Felis catus]
Length = 390
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 75/124 (60%), Gaps = 6/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +CA C + I ++F+LK LD WH CLKC C +L + + +A + CK D+ +
Sbjct: 27 IPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFK 83
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
FGT C AC + IP ++V +A++ VYHL CFAC CN + GD FYL D +++C+
Sbjct: 84 RFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCK 141
Query: 170 YDYE 173
DYE
Sbjct: 142 EDYE 145
>gi|426239972|ref|XP_004013890.1| PREDICTED: LIM/homeobox protein Lhx4 [Ovis aries]
Length = 390
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 75/124 (60%), Gaps = 6/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +CA C + I ++F+LK LD WH CLKC C +L + + +A + CK D+ +
Sbjct: 27 IPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFK 83
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
FGT C AC + IP ++V +A++ VYHL CFAC CN + GD FYL D +++C+
Sbjct: 84 RFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCK 141
Query: 170 YDYE 173
DYE
Sbjct: 142 EDYE 145
>gi|47218680|emb|CAG12404.1| unnamed protein product [Tetraodon nigroviridis]
Length = 444
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 74/121 (61%), Gaps = 6/121 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RF+LK L+ WH CLKC C +L E + + + + CK D+ + FG
Sbjct: 5 CAGCNQHIVDRFILKVLERHWHSKCLKCSDCQAQLAE---KCFSRGDSVYCKEDFFKRFG 61
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDY 172
T CAAC + IP ++V RA++ VYHL CFAC C + GD +YL D++++C+ DY
Sbjct: 62 TK--CAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEYYLMEDSRLVCKTDY 119
Query: 173 E 173
E
Sbjct: 120 E 120
>gi|351699208|gb|EHB02127.1| LIM/homeobox protein Lhx4 [Heterocephalus glaber]
Length = 390
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 75/124 (60%), Gaps = 6/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +CA C + I ++F+LK LD WH CLKC C +L + + +A + CK D+ +
Sbjct: 27 IPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFK 83
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
FGT C AC + IP ++V +A++ VYHL CFAC CN + GD FYL D +++C+
Sbjct: 84 RFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCK 141
Query: 170 YDYE 173
DYE
Sbjct: 142 EDYE 145
>gi|344278250|ref|XP_003410909.1| PREDICTED: LIM/homeobox protein Lhx4-like [Loxodonta africana]
Length = 390
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 75/124 (60%), Gaps = 6/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +CA C + I ++F+LK LD WH CLKC C +L + + +A + CK D+ +
Sbjct: 27 IPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFK 83
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
FGT C AC + IP ++V +A++ VYHL CFAC CN + GD FYL D +++C+
Sbjct: 84 RFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCK 141
Query: 170 YDYE 173
DYE
Sbjct: 142 EDYE 145
>gi|426363578|ref|XP_004048915.1| PREDICTED: LIM/homeobox protein Lhx3 [Gorilla gorilla gorilla]
Length = 304
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/139 (41%), Positives = 78/139 (56%), Gaps = 11/139 (7%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RF+LKALD WH CLKC C L E + + + CK D+ + FG
Sbjct: 36 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFKRFG 92
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDY 172
T CAAC IP ++V RA++ VYHL CFAC C + GD FYL D++++C+ DY
Sbjct: 93 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 150
Query: 173 E-----ERQVFANIAYNPS 186
E E + A + PS
Sbjct: 151 ETAKQREAEATAKRPHEPS 169
>gi|348578364|ref|XP_003474953.1| PREDICTED: LIM/homeobox protein Lhx4 [Cavia porcellus]
Length = 390
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 75/124 (60%), Gaps = 6/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +CA C + I ++F+LK LD WH CLKC C +L + + +A + CK D+ +
Sbjct: 27 IPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFK 83
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
FGT C AC + IP ++V +A++ VYHL CFAC CN + GD FYL D +++C+
Sbjct: 84 RFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCK 141
Query: 170 YDYE 173
DYE
Sbjct: 142 EDYE 145
>gi|281347117|gb|EFB22701.1| hypothetical protein PANDA_014076 [Ailuropoda melanoleuca]
Length = 369
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 77/137 (56%), Gaps = 6/137 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RF+LKALD WH CLKC C L E + + + CK D+ + FG
Sbjct: 34 CAGCDQHILDRFILKALDRHWHSKCLKCTDCHAPLAE---RCFSRGESVYCKDDFFKRFG 90
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDY 172
T CAAC IP ++V RA++ VYHL CFAC C + GD FYL D++++C+ DY
Sbjct: 91 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 148
Query: 173 EERQVFANIAYNPSSLA 189
E + P+ L+
Sbjct: 149 ETAKQRGQWGSPPTLLS 165
>gi|395844276|ref|XP_003794888.1| PREDICTED: LIM/homeobox protein Lhx3 [Otolemur garnettii]
Length = 402
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 87/169 (51%), Gaps = 28/169 (16%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RF+LKALD WH CLKC C L E + + + CK D+ + FG
Sbjct: 36 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHAPLAE---RCFSRGESVYCKDDFFKRFG 92
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDY 172
T CAAC IP ++V RA++ VYHL CFAC C + GD FYL D++++C+ DY
Sbjct: 93 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 150
Query: 173 E---ERQVFANI-----------------AYN--PSSLAHLRRQVTLQV 199
E +R+ A AYN P H+R Q++ +
Sbjct: 151 ETAKQREAEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSET 199
>gi|444521209|gb|ELV13150.1| LIM/homeobox protein Lhx3 [Tupaia chinensis]
Length = 290
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 77/129 (59%), Gaps = 9/129 (6%)
Query: 49 GGLKE---CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCK 105
GG +E CA C + I +RF+LKALD WH CLK CCDC + + + + CK
Sbjct: 24 GGTREIPLCAGCDQHILDRFILKALDRHWHSQCLK--CCDCH-APLAERCFSRGESVYCK 80
Query: 106 RDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DN 164
D+ + FGT CAAC IP ++V RA++ VYHL CFAC C + GD FYL D+
Sbjct: 81 DDFFKRFGTK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDS 138
Query: 165 KILCEYDYE 173
+++C+ DYE
Sbjct: 139 RLVCKADYE 147
>gi|326924792|ref|XP_003208609.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx4-like
[Meleagris gallopavo]
Length = 384
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 76/128 (59%), Gaps = 6/128 (4%)
Query: 47 ASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKR 106
G + +CA C + I ++F+LK LD WH CLKC C +L E + +A + CK
Sbjct: 20 GPGEIPQCAGCSQHILDKFILKVLDRHWHSSCLKCADCQMQLAE---RCFARAGSVYCKE 76
Query: 107 DYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNK 165
D+ + FGT C AC + IP ++V +A++ VYHL CFAC C+ + GD FYL D +
Sbjct: 77 DFFKRFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICSRQLATGDEFYLMEDGR 134
Query: 166 ILCEYDYE 173
++C+ DYE
Sbjct: 135 LVCKEDYE 142
>gi|84490413|ref|NP_001033709.1| LIM/homeobox protein Lhx3 [Bos taurus]
gi|62952823|gb|AAY23167.1| LIM homeodomain 3 protein b isoform [Bos taurus]
gi|62952825|gb|AAY23168.1| LIM homeodomain 3 protein b isoform [Bos taurus]
gi|296482071|tpg|DAA24186.1| TPA: LIM homeobox protein 3 [Bos taurus]
Length = 403
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 87/169 (51%), Gaps = 28/169 (16%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RF+LKALD WH CLKC C L E + + + CK D+ + FG
Sbjct: 36 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHAPLAE---RCFSRGESVYCKDDFFKRFG 92
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDY 172
T CAAC IP ++V RA++ VYHL CFAC C + GD FYL D++++C+ DY
Sbjct: 93 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 150
Query: 173 E---ERQVFANI-----------------AYN--PSSLAHLRRQVTLQV 199
E +R+ A AYN P H+R Q++ +
Sbjct: 151 ETAKQREAEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSET 199
>gi|441636332|ref|XP_003259172.2| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx4 [Nomascus
leucogenys]
Length = 415
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 97/199 (48%), Gaps = 15/199 (7%)
Query: 11 ICDYRSYFDSLRLATHYQVDLTTDASSVTQGALAGGASGG----LKECASCGKRITERFL 66
+ Y S+ D + DL + +Q +A G G + +CA C + I ++F+
Sbjct: 27 VPGYPSFIDWRAHESPPYQDLPGPSRDASQPLMAPGGRPGVWLKIPQCAGCNQHILDKFI 86
Query: 67 LKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIP 126
LK LD WH CLKC C +L + + +A + CK D+ + FGT C AC + IP
Sbjct: 87 LKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFKRFGTK--CTACQQGIP 141
Query: 127 AFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD-----YEERQVFANI 181
++V +A++ VYHL CFAC CN + GD FY D++ + ++ + N
Sbjct: 142 PTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYXXDSEAGAKRPRTTITAKQLETLKNA 201
Query: 182 AYN-PSSLAHLRRQVTLQV 199
N P H+R Q++ +
Sbjct: 202 YKNSPKPARHVREQLSSET 220
>gi|149058349|gb|EDM09506.1| LIM homeobox protein 4 (predicted), isoform CRA_a [Rattus
norvegicus]
Length = 376
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 75/124 (60%), Gaps = 6/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +CA C + I ++F+LK LD WH CLKC C +L + + +A + CK D+ +
Sbjct: 13 IPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFK 69
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
FGT C AC + IP ++V +A++ VYHL CFAC CN + GD FYL D +++C+
Sbjct: 70 RFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCK 127
Query: 170 YDYE 173
DYE
Sbjct: 128 EDYE 131
>gi|326205258|dbj|BAJ84011.1| LIM/homeobox protein Lhx3 [Homo sapiens]
Length = 386
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 75/130 (57%), Gaps = 6/130 (4%)
Query: 45 GGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILC 104
G + + CA C + I +RF+LKALD WH CLKC C L E + + + C
Sbjct: 11 GAPAPEIPLCAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYC 67
Query: 105 KRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-D 163
K D+ + FGT CAAC IP ++V RA++ VYHL CFAC C + GD FYL D
Sbjct: 68 KDDFFKRFGTK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMED 125
Query: 164 NKILCEYDYE 173
++++C+ DYE
Sbjct: 126 SRLVCKADYE 135
>gi|355746127|gb|EHH50752.1| hypothetical protein EGM_01626, partial [Macaca fascicularis]
Length = 364
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 75/124 (60%), Gaps = 6/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +CA C + I ++F+LK LD WH CLKC C +L + + +A + CK D+ +
Sbjct: 1 IPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFK 57
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
FGT C AC + IP ++V +A++ VYHL CFAC CN + GD FYL D +++C+
Sbjct: 58 RFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCK 115
Query: 170 YDYE 173
DYE
Sbjct: 116 EDYE 119
>gi|351701911|gb|EHB04830.1| LIM/homeobox protein Lhx3 [Heterocephalus glaber]
Length = 448
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 87/169 (51%), Gaps = 28/169 (16%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RF+LKALD WH CLKC C L E + + + CK D+ + FG
Sbjct: 82 CAGCDQHILDRFVLKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFKRFG 138
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDY 172
T CAAC IP ++V RA++ VYHL CFAC C + GD FYL D++++C+ DY
Sbjct: 139 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 196
Query: 173 E---ERQVFANI-----------------AYN--PSSLAHLRRQVTLQV 199
E +R+ A AYN P H+R Q++ +
Sbjct: 197 ETAKQREAEATAKRPRTTITAKQLETLKSAYNASPKPARHVREQLSSET 245
>gi|327270281|ref|XP_003219918.1| PREDICTED: LIM/homeobox protein Lhx4-like [Anolis carolinensis]
Length = 449
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 75/124 (60%), Gaps = 6/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +CA C + I ++F+LK LD WH CLKC C +L + + +A + CK D+ +
Sbjct: 86 IPQCAGCNQHILDKFILKVLDRHWHGSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFK 142
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
FGT C AC + IP ++V +A++ VYHL CFAC CN + GD FYL D +++C+
Sbjct: 143 RFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCK 200
Query: 170 YDYE 173
DYE
Sbjct: 201 EDYE 204
>gi|14579221|gb|AAK69169.1|AF282899_1 LIM homeobox protein [Homo sapiens]
gi|15146348|dbj|BAB62817.1| LIM homeobox 4 [Homo sapiens]
Length = 367
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 75/124 (60%), Gaps = 6/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +CA C + I ++F+LK LD WH CLKC C +L + + +A + CK D+ +
Sbjct: 4 IPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFK 60
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
FGT C AC + IP ++V +A++ VYHL CFAC CN + GD FYL D +++C+
Sbjct: 61 RFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCK 118
Query: 170 YDYE 173
DYE
Sbjct: 119 EDYE 122
>gi|109109779|ref|XP_001096188.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Macaca mulatta]
Length = 402
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 87/169 (51%), Gaps = 28/169 (16%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RF+LKALD WH CLKC C L E + + + CK D+ + FG
Sbjct: 36 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFKRFG 92
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDY 172
T CAAC IP ++V RA++ VYHL CFAC C + GD FYL D++++C+ DY
Sbjct: 93 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 150
Query: 173 E---ERQVFANI-----------------AYN--PSSLAHLRRQVTLQV 199
E +R+ A AYN P H+R Q++ +
Sbjct: 151 ETAKQREAEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSET 199
>gi|4809173|gb|AAD30125.1|AF135415_1 LIM-homeobox protein [Mus musculus]
Length = 367
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 75/124 (60%), Gaps = 6/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +CA C + I ++F+LK LD WH CLKC C +L + + +A + CK D+ +
Sbjct: 4 IPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFK 60
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
FGT C AC + IP ++V +A++ VYHL CFAC CN + GD FYL D +++C+
Sbjct: 61 RFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCK 118
Query: 170 YDYE 173
DYE
Sbjct: 119 EDYE 122
>gi|171544941|ref|NP_001116387.1| LIM/homeobox protein Lhx3 [Oryzias latipes]
gi|157410515|gb|ABV53980.1| LIM/homeobox protein Lhx3 [Oryzias latipes]
Length = 401
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 78/132 (59%), Gaps = 7/132 (5%)
Query: 44 AGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLIL 103
+ G S + CA C + I +RF+LK LD WH CLKC C +L E + + + +
Sbjct: 20 SSGQSAEIPVCAGCNQHIVDRFILKVLDRHWHGKCLKCSDCQAQLAE---KCFSRGDSVY 76
Query: 104 CKRDYL-RLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC 162
CK D+ R FGT CAAC + IP ++V RA++ VYHL CFAC C + GD +YL
Sbjct: 77 CKDDFFKRRFGTK--CAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEYYLM 134
Query: 163 -DNKILCEYDYE 173
D++++C+ DYE
Sbjct: 135 EDSRLVCKTDYE 146
>gi|296191171|ref|XP_002743509.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 3 [Callithrix jacchus]
Length = 373
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 72/121 (59%), Gaps = 6/121 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RF+LKALD WH CLKC C L E + + + CK D+ + FG
Sbjct: 7 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFKRFG 63
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDY 172
T CAAC IP ++V RA++ VYHL CFAC C + GD FYL D++++C+ DY
Sbjct: 64 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 121
Query: 173 E 173
E
Sbjct: 122 E 122
>gi|296191167|ref|XP_002743507.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Callithrix jacchus]
Length = 402
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 72/121 (59%), Gaps = 6/121 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RF+LKALD WH CLKC C L E + + + CK D+ + FG
Sbjct: 36 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFKRFG 92
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDY 172
T CAAC IP ++V RA++ VYHL CFAC C + GD FYL D++++C+ DY
Sbjct: 93 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 150
Query: 173 E 173
E
Sbjct: 151 E 151
>gi|354497582|ref|XP_003510898.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Cricetulus griseus]
gi|344256661|gb|EGW12765.1| LIM/homeobox protein Lhx3 [Cricetulus griseus]
Length = 403
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 87/169 (51%), Gaps = 28/169 (16%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RF+LKALD WH CLKC C L E + + + CK D+ + FG
Sbjct: 36 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHIPLAE---RCFSRGESVYCKDDFFKRFG 92
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDY 172
T CAAC IP ++V RA++ VYHL CFAC C + GD FYL D++++C+ DY
Sbjct: 93 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 150
Query: 173 E---ERQVFANI-----------------AYN--PSSLAHLRRQVTLQV 199
E +R+ A AYN P H+R Q++ +
Sbjct: 151 ETAKQREAEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSET 199
>gi|194226030|ref|XP_001918019.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx3 [Equus
caballus]
Length = 401
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 87/169 (51%), Gaps = 28/169 (16%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RF+LKALD WH CLKC C L E + + + CK D+ + FG
Sbjct: 34 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFKRFG 90
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDY 172
T CAAC IP ++V RA++ VYHL CFAC C + GD FYL D++++C+ DY
Sbjct: 91 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 148
Query: 173 E---ERQVFANI-----------------AYN--PSSLAHLRRQVTLQV 199
E +R+ A AYN P H+R Q++ +
Sbjct: 149 ETAKQREAEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSET 197
>gi|431898999|gb|ELK07369.1| LIM/homeobox protein Lhx3 [Pteropus alecto]
Length = 357
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 72/121 (59%), Gaps = 6/121 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RF+LKALD WH CLKC C L E + + + CK D+ + FG
Sbjct: 34 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKEDFFKRFG 90
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDY 172
T CAAC IP ++V RA++ VYHL CFAC C + GD FYL D++++C+ DY
Sbjct: 91 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 148
Query: 173 E 173
E
Sbjct: 149 E 149
>gi|402896089|ref|XP_003911140.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 3 [Papio anubis]
Length = 373
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 72/121 (59%), Gaps = 6/121 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RF+LKALD WH CLKC C L E + + + CK D+ + FG
Sbjct: 7 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFKRFG 63
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDY 172
T CAAC IP ++V RA++ VYHL CFAC C + GD FYL D++++C+ DY
Sbjct: 64 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 121
Query: 173 E 173
E
Sbjct: 122 E 122
>gi|348535047|ref|XP_003455013.1| PREDICTED: LIM/homeobox protein Lhx3-like [Oreochromis niloticus]
Length = 400
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 74/121 (61%), Gaps = 6/121 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RF+LK LD WH CLKC C +L + + + + + CK D+ + FG
Sbjct: 28 CAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQAQLAD---KCFTRGDSVYCKDDFFKRFG 84
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDY 172
T CAAC + IP ++V RA++ VYHL CFAC C + GD +YL D++++C+ DY
Sbjct: 85 TK--CAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEYYLMEDSRLVCKADY 142
Query: 173 E 173
E
Sbjct: 143 E 143
>gi|301770851|ref|XP_002920842.1| PREDICTED: LIM/homeobox protein Lhx4-like [Ailuropoda melanoleuca]
Length = 390
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 75/124 (60%), Gaps = 6/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +CA C + I ++F+LK LD WH CLKC C +L + + +A + CK D+ +
Sbjct: 27 IPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFK 83
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
FGT C AC + IP ++V +A++ VYHL CF+C CN + GD FYL D +++C+
Sbjct: 84 RFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFSCVICNRQLATGDEFYLMEDGRLVCK 141
Query: 170 YDYE 173
DYE
Sbjct: 142 EDYE 145
>gi|432868110|ref|XP_004071416.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Oryzias
latipes]
Length = 398
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/139 (41%), Positives = 81/139 (58%), Gaps = 6/139 (4%)
Query: 49 GGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDY 108
GG + CA C I++RFLL+ + WHE C+KC C L + T Y + L+ CK DY
Sbjct: 50 GGGEVCAGCESPISDRFLLRVNERSWHETCVKCAVC---LSTLTGTCYCRDRLLYCKLDY 106
Query: 109 LRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILC 168
+LF C+AC +VI E++MR VYHL CF+C +C R GD F L + ++LC
Sbjct: 107 EKLF--VRKCSACLQVIGRSELIMRVLGQVYHLGCFSCCECERRLQRGDEFVLKEGQLLC 164
Query: 169 EYDYE-ERQVFANIAYNPS 186
DYE ER++ A I+ P+
Sbjct: 165 RMDYEKEREMLAAISPTPT 183
>gi|18308156|gb|AAL67847.1|AF461699_1 LIM homeobox protein [Gallus gallus]
Length = 214
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 76/127 (59%), Gaps = 6/127 (4%)
Query: 48 SGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 107
S + CA C + I +RF+LK LD WH CLKC C +L E + + + + CK D
Sbjct: 22 SPEIPLCAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQTQLAE---KCFSRGDGVYCKED 78
Query: 108 YLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKI 166
+ + FGT CAAC + IP ++V RA++ VYHL CFAC C + GD FYL D+++
Sbjct: 79 FFKRFGTK--CAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEFYLMEDSRL 136
Query: 167 LCEYDYE 173
+C+ DYE
Sbjct: 137 VCKADYE 143
>gi|89001116|ref|NP_001034742.1| LIM/homeobox protein Lhx3 [Mus musculus]
gi|598327|gb|AAB64178.1| homeodomain protein [Mus musculus]
gi|124375774|gb|AAI32557.1| LIM homeobox protein 3 [Mus musculus]
gi|124376794|gb|AAI32555.1| LIM homeobox protein 3 [Mus musculus]
Length = 402
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 72/121 (59%), Gaps = 6/121 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RF+LKALD WH CLKC C L E + + + CK D+ + FG
Sbjct: 36 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAE---RCFSRGESVYCKDDFFKRFG 92
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDY 172
T CAAC IP ++V RA++ VYHL CFAC C + GD FYL D++++C+ DY
Sbjct: 93 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 150
Query: 173 E 173
E
Sbjct: 151 E 151
>gi|402896087|ref|XP_003911139.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Papio anubis]
Length = 402
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 72/121 (59%), Gaps = 6/121 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RF+LKALD WH CLKC C L E + + + CK D+ + FG
Sbjct: 36 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFKRFG 92
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDY 172
T CAAC IP ++V RA++ VYHL CFAC C + GD FYL D++++C+ DY
Sbjct: 93 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 150
Query: 173 E 173
E
Sbjct: 151 E 151
>gi|293345787|ref|XP_001078243.2| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Rattus norvegicus]
gi|293357700|ref|XP_001059910.2| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Rattus norvegicus]
gi|149039302|gb|EDL93522.1| rCG45383, isoform CRA_b [Rattus norvegicus]
Length = 402
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 72/121 (59%), Gaps = 6/121 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RF+LKALD WH CLKC C L E + + + CK D+ + FG
Sbjct: 36 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAE---RCFSRGESVYCKDDFFKRFG 92
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDY 172
T CAAC IP ++V RA++ VYHL CFAC C + GD FYL D++++C+ DY
Sbjct: 93 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 150
Query: 173 E 173
E
Sbjct: 151 E 151
>gi|7657303|ref|NP_055379.1| LIM/homeobox protein Lhx3 isoform b [Homo sapiens]
gi|7110145|gb|AAF36809.1|AF156889_1 LIM homeobox protein 3 isoform b [Homo sapiens]
gi|119608611|gb|EAW88205.1| LIM homeobox 3, isoform CRA_a [Homo sapiens]
gi|157169604|gb|AAI52819.1| LIM homeobox 3 [synthetic construct]
gi|162318656|gb|AAI56736.1| LIM homeobox 3 [synthetic construct]
gi|307685965|dbj|BAJ20913.1| LIM homeobox 3 [synthetic construct]
gi|326205262|dbj|BAJ84013.1| LIM/homeobox protein Lhx3 [Homo sapiens]
Length = 402
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 87/169 (51%), Gaps = 28/169 (16%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RF+LKALD WH CLKC C L E + + + CK D+ + FG
Sbjct: 36 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFKRFG 92
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDY 172
T CAAC IP ++V RA++ VYHL CFAC C + GD FYL D++++C+ DY
Sbjct: 93 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 150
Query: 173 E---ERQVFANI-----------------AYN--PSSLAHLRRQVTLQV 199
E +R+ A AYN P H+R Q++ +
Sbjct: 151 ETAKQREAEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSET 199
>gi|297685716|ref|XP_002820429.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Pongo abelii]
Length = 402
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 87/169 (51%), Gaps = 28/169 (16%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RF+LKALD WH CLKC C L E + + + CK D+ + FG
Sbjct: 36 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFKRFG 92
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDY 172
T CAAC IP ++V RA++ VYHL CFAC C + GD FYL D++++C+ DY
Sbjct: 93 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 150
Query: 173 E---ERQVFANI-----------------AYN--PSSLAHLRRQVTLQV 199
E +R+ A AYN P H+R Q++ +
Sbjct: 151 ETAKQREAEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSET 199
>gi|293345789|ref|XP_002726117.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Rattus norvegicus]
gi|293357702|ref|XP_002729190.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Rattus norvegicus]
gi|149039301|gb|EDL93521.1| rCG45383, isoform CRA_a [Rattus norvegicus]
Length = 400
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 72/121 (59%), Gaps = 6/121 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RF+LKALD WH CLKC C L E + + + CK D+ + FG
Sbjct: 34 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAE---RCFSRGESVYCKDDFFKRFG 90
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDY 172
T CAAC IP ++V RA++ VYHL CFAC C + GD FYL D++++C+ DY
Sbjct: 91 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 148
Query: 173 E 173
E
Sbjct: 149 E 149
>gi|148676345|gb|EDL08292.1| mCG18748, isoform CRA_b [Mus musculus]
Length = 402
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 72/121 (59%), Gaps = 6/121 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RF+LKALD WH CLKC C L E + + + CK D+ + FG
Sbjct: 36 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAE---RCFSRGESVYCKDDFFKRFG 92
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDY 172
T CAAC IP ++V RA++ VYHL CFAC C + GD FYL D++++C+ DY
Sbjct: 93 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 150
Query: 173 E 173
E
Sbjct: 151 E 151
>gi|260793678|ref|XP_002591838.1| LIM class homeodomain transcription factor, Lhx3 subclass
[Branchiostoma floridae]
gi|229277049|gb|EEN47849.1| LIM class homeodomain transcription factor, Lhx3 subclass
[Branchiostoma floridae]
Length = 402
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 75/127 (59%), Gaps = 6/127 (4%)
Query: 48 SGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 107
S + +CA C + I +RF+LK LD WH CL+C C +L + + + + CK D
Sbjct: 35 SPNIPKCAGCEQVILDRFILKVLDRSWHAKCLQCSDCQAQLTD---KCFSRDGHVYCKDD 91
Query: 108 YLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKI 166
+ R FGT CA C + IP ++V RA++ +YHL+CFAC C + GD FYL D K+
Sbjct: 92 FFRRFGTK--CAGCGQGIPPTQVVRRAQDKIYHLQCFACIMCKRQLATGDEFYLMEDAKL 149
Query: 167 LCEYDYE 173
+C+ DYE
Sbjct: 150 VCKSDYE 156
>gi|20502369|dbj|BAB91364.1| LIM homeodomain protein [Branchiostoma belcheri]
Length = 402
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 75/127 (59%), Gaps = 6/127 (4%)
Query: 48 SGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 107
S + +CA C + I +RF+LK LD WH CL+C C +L + + + + CK D
Sbjct: 35 SPNIPKCAGCEQVILDRFILKVLDRSWHAKCLQCSDCQAQLTD---KCFSRDGHVYCKDD 91
Query: 108 YLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKI 166
+ R FGT CA C + IP ++V RA++ +YHL+CFAC C + GD FYL D K+
Sbjct: 92 FFRRFGTK--CAGCGQGIPPTQVVRRAQDKIYHLQCFACIMCKRQLATGDEFYLMEDAKL 149
Query: 167 LCEYDYE 173
+C+ DYE
Sbjct: 150 VCKSDYE 156
>gi|327277087|ref|XP_003223297.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Anolis
carolinensis]
Length = 381
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 88/160 (55%), Gaps = 10/160 (6%)
Query: 32 TTDASSVTQGA---LAGGASGGLKE-CASCGKRITERFLLKALDLFWHEDCLKCGCCDCR 87
T +A S Q A L G+ ++E CA C I++RFLL+ + WHE C+KC C
Sbjct: 15 TEEAPSCLQQATPVLGYGSESKMREVCAGCNTPISDRFLLRVNERSWHEGCVKCAAC--- 71
Query: 88 LGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQ 147
L + T Y + + CK DY +LF T C+ C K + E +MR NVYH+ CF+C
Sbjct: 72 LQPLSGTCYCRNRQLYCKHDYEKLFQTK--CSGCLKAVAPSEFIMRVLENVYHVHCFSCC 129
Query: 148 QCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFANIAYNPS 186
+C R GD F L + ++LC DYE ER++ + I+ P+
Sbjct: 130 ECERRLQRGDEFVLKEGQLLCRSDYEKEREMLSAISPAPT 169
>gi|410921222|ref|XP_003974082.1| PREDICTED: LIM/homeobox protein Lhx8-like [Takifugu rubripes]
Length = 324
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/143 (41%), Positives = 80/143 (55%), Gaps = 5/143 (3%)
Query: 31 LTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGE 90
L D+SS+ A+A G CA+CG+ I +++LLK DL WH CL C C LG
Sbjct: 34 LDEDSSSLQ--AMASAPLMGRAVCANCGEEIVDKYLLKVNDLCWHVRCLSCSVCHTSLGS 91
Query: 91 VGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCN 150
++ Y K + CK DY R +GT +CA C + I + + V RAK NVYHL CFAC C
Sbjct: 92 -HTSCYIKEKEVFCKMDYFRRYGT--WCACCGRNIHSTDWVRRAKGNVYHLACFACFSCK 148
Query: 151 HRFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 149 RQLSTGEEFALVEEKVLCRVHYD 171
>gi|1708829|sp|P50481.1|LHX3_MOUSE RecName: Full=LIM/homeobox protein Lhx3; Short=LIM homeobox protein
3; AltName: Full=Homeobox protein LIM-3; AltName:
Full=Homeobox protein P-LIM
gi|575517|gb|AAA62369.1| LIM-homeoprotein [Mus musculus]
gi|187956241|gb|AAI50690.1| Lhx3 protein [Mus musculus]
Length = 400
Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 72/121 (59%), Gaps = 6/121 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RF+LKALD WH CLKC C L E + + + CK D+ + FG
Sbjct: 34 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAE---RCFSRGESVYCKDDFFKRFG 90
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDY 172
T CAAC IP ++V RA++ VYHL CFAC C + GD FYL D++++C+ DY
Sbjct: 91 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 148
Query: 173 E 173
E
Sbjct: 149 E 149
>gi|148676344|gb|EDL08291.1| mCG18748, isoform CRA_a [Mus musculus]
Length = 400
Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 72/121 (59%), Gaps = 6/121 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RF+LKALD WH CLKC C L E + + + CK D+ + FG
Sbjct: 34 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAE---RCFSRGESVYCKDDFFKRFG 90
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDY 172
T CAAC IP ++V RA++ VYHL CFAC C + GD FYL D++++C+ DY
Sbjct: 91 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 148
Query: 173 E 173
E
Sbjct: 149 E 149
>gi|308235933|ref|NP_001184116.1| LIM/homeobox protein Lhx3 [Canis lupus familiaris]
gi|300837161|gb|ADK38612.1| LIM homeodomain protein 3 isoform LHX3b [Canis lupus familiaris]
Length = 403
Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 87/169 (51%), Gaps = 28/169 (16%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RF+LKALD WH CLKC C L E + + + CK D+ + FG
Sbjct: 36 CAGCDQHILDRFILKALDRHWHSKCLKCTDCHTPLAE---RCFSRGESVYCKDDFFKRFG 92
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDY 172
T CAAC IP ++V RA++ VYHL CFAC C + GD FYL D++++C+ DY
Sbjct: 93 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 150
Query: 173 E---ERQVFANI-----------------AYN--PSSLAHLRRQVTLQV 199
E +R+ A AYN P H+R Q++ +
Sbjct: 151 ETAKQREAEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSET 199
>gi|354497584|ref|XP_003510899.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Cricetulus griseus]
Length = 401
Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 72/121 (59%), Gaps = 6/121 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RF+LKALD WH CLKC C L E + + + CK D+ + FG
Sbjct: 34 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHIPLAE---RCFSRGESVYCKDDFFKRFG 90
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDY 172
T CAAC IP ++V RA++ VYHL CFAC C + GD FYL D++++C+ DY
Sbjct: 91 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 148
Query: 173 E 173
E
Sbjct: 149 E 149
>gi|281354363|gb|EFB29947.1| hypothetical protein PANDA_009642 [Ailuropoda melanoleuca]
Length = 365
Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 75/124 (60%), Gaps = 6/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +CA C + I ++F+LK LD WH CLKC C +L + + +A + CK D+ +
Sbjct: 2 IPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFK 58
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
FGT C AC + IP ++V +A++ VYHL CF+C CN + GD FYL D +++C+
Sbjct: 59 RFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFSCVICNRQLATGDEFYLMEDGRLVCK 116
Query: 170 YDYE 173
DYE
Sbjct: 117 EDYE 120
>gi|25453086|sp|O97581.1|LHX3_PIG RecName: Full=LIM/homeobox protein Lhx3; Short=LIM homeobox protein
3; AltName: Full=Homeobox protein LIM-3; AltName:
Full=Homeobox protein P-LIM
gi|4091889|gb|AAC99331.1| LIM homeodomain transcription factor [Sus scrofa]
Length = 383
Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 87/169 (51%), Gaps = 28/169 (16%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RF+LKALD WH CLKC C L E + + + CK D+ + FG
Sbjct: 16 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESLYCKDDFFKRFG 72
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDY 172
T CAAC IP ++V RA++ VYHL CFAC C + GD FYL D++++C+ DY
Sbjct: 73 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 130
Query: 173 E---ERQVFANI-----------------AYN--PSSLAHLRRQVTLQV 199
E +R+ A AYN P H+R Q++ +
Sbjct: 131 ETAKQREAEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSET 179
>gi|354475897|ref|XP_003500163.1| PREDICTED: LIM/homeobox protein Lhx4 [Cricetulus griseus]
Length = 390
Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 75/124 (60%), Gaps = 6/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +CA C + I ++F+LK LD WH CLKC C +L + + +A + CK D+ +
Sbjct: 27 IPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLVD---RCFSRAGSVYCKEDFFK 83
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
FGT C AC + IP ++V +A++ VYHL CFAC CN + GD FYL D +++C+
Sbjct: 84 RFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCK 141
Query: 170 YDYE 173
DYE
Sbjct: 142 EDYE 145
>gi|241738273|ref|XP_002414047.1| rhombotin, putative [Ixodes scapularis]
gi|215507901|gb|EEC17355.1| rhombotin, putative [Ixodes scapularis]
Length = 173
Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/67 (77%), Positives = 53/67 (79%), Gaps = 2/67 (2%)
Query: 44 AGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLIL 103
AG G ECA C K I ERFLLKALD WHEDCLKC CCDCRLGEVGSTL+ KANLIL
Sbjct: 65 AGSLPG--PECAGCQKPIRERFLLKALDQLWHEDCLKCACCDCRLGEVGSTLFTKANLIL 122
Query: 104 CKRDYLR 110
CKRDYLR
Sbjct: 123 CKRDYLR 129
>gi|171916111|ref|NP_001116445.1| LIM/homeobox protein Lhx4 [Danio rerio]
Length = 391
Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 75/124 (60%), Gaps = 6/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +CA C + I ++F+LK LD WH CLKC C L + + +A + CK D+ +
Sbjct: 30 IPQCAGCSQHILDKFILKVLDRHWHSKCLKCADCHALLAD---KCFSRAGNVYCKEDFFK 86
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
FGT CA+C + IP ++V +A++ VYHL CFAC C+ + GD FYL D +++C+
Sbjct: 87 RFGTK--CASCQQGIPPTQVVRKAQDFVYHLHCFACVMCSRQLATGDEFYLMEDGRLVCK 144
Query: 170 YDYE 173
DYE
Sbjct: 145 EDYE 148
>gi|348574776|ref|XP_003473166.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx3-like
[Cavia porcellus]
Length = 403
Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 87/169 (51%), Gaps = 28/169 (16%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RF+LKALD WH CL+C C L E + + + CK D+ + FG
Sbjct: 36 CAGCDQHILDRFILKALDRHWHSKCLRCSDCHTPLAE---RCFSRGESVYCKDDFFKRFG 92
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDY 172
T CAAC IP ++V RA++ VYHL CFAC C + GD FYL D++++C+ DY
Sbjct: 93 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 150
Query: 173 E---ERQVFANI-----------------AYN--PSSLAHLRRQVTLQV 199
E +R+ A AYN P H+R Q++ +
Sbjct: 151 EAAKQREAEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSET 199
>gi|109019176|ref|XP_001115086.1| PREDICTED: LIM/homeobox protein Lhx4-like isoform 2 [Macaca
mulatta]
Length = 390
Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 74/124 (59%), Gaps = 6/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +CA C + I ++F+LK LD WH CLKC C +L + + +A + CK D R
Sbjct: 27 IPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDPDR 83
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
FGT C AC + IP ++V +A++ VYHL CFAC CN + GD FYL D +++C+
Sbjct: 84 RFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCK 141
Query: 170 YDYE 173
DYE
Sbjct: 142 EDYE 145
>gi|344254045|gb|EGW10149.1| LIM/homeobox protein Lhx4 [Cricetulus griseus]
Length = 397
Score = 106 bits (264), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 75/124 (60%), Gaps = 6/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +CA C + I ++F+LK LD WH CLKC C +L + + +A + CK D+ +
Sbjct: 7 IPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLVD---RCFSRAGSVYCKEDFFK 63
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
FGT C AC + IP ++V +A++ VYHL CFAC CN + GD FYL D +++C+
Sbjct: 64 RFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCK 121
Query: 170 YDYE 173
DYE
Sbjct: 122 EDYE 125
>gi|339961229|pdb|3MMK|A Chain A, The Structural Basis For Partial Redundancy In A Class Of
Transcription Factors, The Lim-Homeodomain Proteins, In
Neural Cell Type Specification
gi|339961230|pdb|3MMK|B Chain B, The Structural Basis For Partial Redundancy In A Class Of
Transcription Factors, The Lim-Homeodomain Proteins, In
Neural Cell Type Specification
Length = 169
Score = 106 bits (264), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 79/129 (61%), Gaps = 6/129 (4%)
Query: 46 GASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCK 105
G+ + +CA C + I ++F+LK LD WH CLKC DC++ ++ + +A + CK
Sbjct: 1 GSMQQIPQCAGCNQHILDKFILKVLDRHWHSSCLKCA--DCQM-QLADRCFSRAGSVYCK 57
Query: 106 RDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DN 164
D+ + FGT C AC + IP ++V +A++ VYHL CFAC CN + GD FYL D
Sbjct: 58 EDFFKRFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDG 115
Query: 165 KILCEYDYE 173
+++C+ DYE
Sbjct: 116 RLVCKEDYE 124
>gi|410902629|ref|XP_003964796.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Takifugu
rubripes]
Length = 376
Score = 106 bits (264), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 80/140 (57%), Gaps = 6/140 (4%)
Query: 48 SGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 107
GG + CA C I +RFLL+ + WHE C+KC C L + T Y + L+ CK D
Sbjct: 26 GGGGELCAGCEAPIADRFLLRVNERSWHETCVKCAVC---LSALTGTCYCRDRLLYCKHD 82
Query: 108 YLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKIL 167
Y +LF C++C +VI E++MR + VYHL CF C +C R GD F L + ++L
Sbjct: 83 YEKLF--VRKCSSCLQVIGRSELIMRVQGQVYHLGCFTCCECERRLQRGDEFVLKEGQLL 140
Query: 168 CEYDYE-ERQVFANIAYNPS 186
C DYE ER++ A I+ P+
Sbjct: 141 CRMDYEKEREMLAAISPTPT 160
>gi|196049633|pdb|2RGT|A Chain A, Crystal Structure Of Lhx3 Lim Domains 1 And 2 With The
Binding Domain Of Isl1
gi|196049634|pdb|2RGT|B Chain B, Crystal Structure Of Lhx3 Lim Domains 1 And 2 With The
Binding Domain Of Isl1
Length = 169
Score = 106 bits (264), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 76/129 (58%), Gaps = 6/129 (4%)
Query: 46 GASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCK 105
G++ + CA C + I +RF+LKALD WH CLKC C L E + + + CK
Sbjct: 1 GSTPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAE---RCFSRGESVYCK 57
Query: 106 RDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DN 164
D+ + FGT CAAC IP ++V RA++ VYHL CFAC C + GD FYL D+
Sbjct: 58 DDFFKRFGTK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDS 115
Query: 165 KILCEYDYE 173
+++C+ DYE
Sbjct: 116 RLVCKADYE 124
>gi|780314|gb|AAA73902.1| PLim [Mus musculus]
Length = 400
Score = 106 bits (264), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 72/121 (59%), Gaps = 6/121 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RF+LKALD WH CLKC C L E + + + CK D+ + FG
Sbjct: 34 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAE---RCFSRRESVYCKDDFFKRFG 90
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDY 172
T CAAC IP ++V RA++ VYHL CFAC C + GD FYL D++++C+ DY
Sbjct: 91 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 148
Query: 173 E 173
E
Sbjct: 149 E 149
>gi|391347312|ref|XP_003747908.1| PREDICTED: LIM domain only protein 3-like [Metaseiulus
occidentalis]
Length = 136
Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 73/121 (60%), Gaps = 3/121 (2%)
Query: 67 LKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIP 126
+K + FWH+DCLKC C CRL ++L++K C+ DYLR FG C+ C + I
Sbjct: 1 MKVVGKFWHQDCLKCSVCGCRLT---TSLFEKHGAFFCREDYLRKFGVDNQCSGCFEAIQ 57
Query: 127 AFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFANIAYNPS 186
A E+VMR+ ++VYH+ CF C C GDR+ + N++LCE DYE + + ++Y S
Sbjct: 58 ASELVMRSSSHVYHVRCFCCFHCRKGLNTGDRYVISGNRLLCEADYEGMLLSSRLSYYFS 117
Query: 187 S 187
S
Sbjct: 118 S 118
>gi|326666245|ref|XP_001922131.3| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Danio
rerio]
Length = 396
Score = 105 bits (263), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 58/139 (41%), Positives = 79/139 (56%), Gaps = 6/139 (4%)
Query: 49 GGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDY 108
GG + CA C I +RFLL+ +L WHE C+KC C L T Y + L+ CK DY
Sbjct: 55 GGGEVCAGCESPIADRFLLRVNELSWHETCVKCAVCRSALS---GTCYCRDRLLYCKHDY 111
Query: 109 LRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILC 168
+LF C+AC + I E++MR VYHL CF+C +C R GD F L + ++LC
Sbjct: 112 EKLF--VRKCSACLQAIGRSELIMRVLGQVYHLGCFSCCECERRLQRGDEFVLKEGQLLC 169
Query: 169 EYDYE-ERQVFANIAYNPS 186
DYE ER++ A I+ P+
Sbjct: 170 RGDYEKEREMLAAISPAPT 188
>gi|426222898|ref|XP_004005617.1| PREDICTED: LIM/homeobox protein Lhx3 [Ovis aries]
Length = 401
Score = 105 bits (263), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 93/200 (46%), Gaps = 28/200 (14%)
Query: 23 LATHYQVDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCG 82
L T + D T G G + G A C + I +RF LKAL WH CLKC
Sbjct: 3 LETDLEGDRDRPPGPATTGLCTFGRTRGTPRWAGCAQPILDRFTLKALGRHWHSKCLKCS 62
Query: 83 CCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLE 142
C L E + + + CK D+ + FGT CAAC IP ++V RA++ VYHL
Sbjct: 63 DCHAPLAE---RCFSRGESVYCKDDFFKRFGTK--CAACQLGIPPTQVVRRAQDFVYHLH 117
Query: 143 CFACQQCNHRFCVGDRFYLC-DNKILCEYDYE---ERQVFANI----------------- 181
CFAC C + GD FYL D++++C+ DYE +R+ A
Sbjct: 118 CFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLKS 177
Query: 182 AYN--PSSLAHLRRQVTLQV 199
AYN P H+R Q++ +
Sbjct: 178 AYNTSPKPARHVREQLSSET 197
>gi|403266388|ref|XP_003925368.1| PREDICTED: LIM/homeobox protein Lhx4 [Saimiri boliviensis
boliviensis]
Length = 390
Score = 105 bits (263), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 74/124 (59%), Gaps = 6/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +CA C + I ++F+LK LD WH CLKC C +L + + +A + CK D+ +
Sbjct: 27 IPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFK 83
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
FGT C AC + IP ++V +A++ VYHL CFAC C + GD FYL D +++C+
Sbjct: 84 RFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICTRQLATGDEFYLMEDGRLVCK 141
Query: 170 YDYE 173
DYE
Sbjct: 142 EDYE 145
>gi|296229653|ref|XP_002760359.1| PREDICTED: LIM/homeobox protein Lhx4 [Callithrix jacchus]
Length = 390
Score = 105 bits (263), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 74/124 (59%), Gaps = 6/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +CA C + I ++F+LK LD WH CLKC C +L + + +A + CK D+ +
Sbjct: 27 IPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFK 83
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
FGT C AC + IP ++V +A++ VYHL CFAC C + GD FYL D +++C+
Sbjct: 84 RFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICTRQLATGDEFYLMEDGRLVCK 141
Query: 170 YDYE 173
DYE
Sbjct: 142 EDYE 145
>gi|449509307|ref|XP_002191188.2| PREDICTED: LIM/homeobox protein Lhx4-like, partial [Taeniopygia
guttata]
Length = 412
Score = 105 bits (263), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 75/124 (60%), Gaps = 6/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +CA C + I ++F+LK LD WH CLKC C +L E + +A + CK D+ +
Sbjct: 44 IPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAE---RCFSRAGSVYCKEDFFK 100
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
FGT C AC + IP ++V +A++ VYHL CFAC C+ + GD FYL D +++C+
Sbjct: 101 RFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICSRQLATGDEFYLMEDGRLVCK 158
Query: 170 YDYE 173
DYE
Sbjct: 159 EDYE 162
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 49/76 (64%), Gaps = 4/76 (5%)
Query: 99 ANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDR 158
++ +L R +LR FGT C AC + IP ++V +A++ VYHL CFAC C+ + GD
Sbjct: 269 SDSVLSFRAFLR-FGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICSRQLATGDE 325
Query: 159 FYLC-DNKILCEYDYE 173
FYL D +++C+ DYE
Sbjct: 326 FYLMEDGRLVCKEDYE 341
>gi|260793680|ref|XP_002591839.1| LIM class homeodomain transcription factor, Lhx3 subclass
[Branchiostoma floridae]
gi|229277050|gb|EEN47850.1| LIM class homeodomain transcription factor, Lhx3 subclass
[Branchiostoma floridae]
Length = 278
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 75/127 (59%), Gaps = 6/127 (4%)
Query: 48 SGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 107
S + +CA C + I +RF+LK LD WH CL+C C +L + + + + CK D
Sbjct: 35 SPNIPKCAGCEQVILDRFILKVLDRSWHAKCLQCSDCQAQLTD---KCFSRDGHVYCKDD 91
Query: 108 YLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKI 166
+ R FGT CA C + IP ++V RA++ +YHL+CFAC C + GD FYL D K+
Sbjct: 92 FFRRFGTK--CAGCGQGIPPTQVVRRAQDKIYHLQCFACIMCKRQLATGDEFYLMEDAKL 149
Query: 167 LCEYDYE 173
+C+ DYE
Sbjct: 150 VCKSDYE 156
>gi|242011200|ref|XP_002426343.1| LIM/homeobox protein Lhx4, putative [Pediculus humanus corporis]
gi|212510420|gb|EEB13605.1| LIM/homeobox protein Lhx4, putative [Pediculus humanus corporis]
Length = 366
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 72/128 (56%), Gaps = 6/128 (4%)
Query: 47 ASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKR 106
A + +C C + I +RF+LK LD WH CL C C G + + + + CK
Sbjct: 17 ADASIPKCGGCQELILDRFILKVLDRTWHAKCLNCNDCG---GPLTDKCFARNGQVYCKD 73
Query: 107 DYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNK 165
D+ + FGT CA C + IP ++V RA+ NVYHL+CFAC C + GD FYL D K
Sbjct: 74 DFFKRFGTK--CAGCEQGIPPTQVVRRAQENVYHLQCFACAMCARQLNTGDEFYLMEDKK 131
Query: 166 ILCEYDYE 173
++C+ DYE
Sbjct: 132 LVCKPDYE 139
>gi|291397314|ref|XP_002715058.1| PREDICTED: LIM homeobox protein 4 [Oryctolagus cuniculus]
Length = 390
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 74/124 (59%), Gaps = 6/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +CA C + I ++F+LK LD WH CLKC C +L + + +A CK D+ +
Sbjct: 27 IPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSFYCKEDFFK 83
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
FGT C AC + IP ++V +A++ VYHL CFAC C+ + GD FYL D +++C+
Sbjct: 84 RFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICSRQLATGDEFYLMEDGRLVCK 141
Query: 170 YDYE 173
DYE
Sbjct: 142 EDYE 145
>gi|410904301|ref|XP_003965630.1| PREDICTED: LIM/homeobox protein Lhx6-like [Takifugu rubripes]
Length = 373
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 84/168 (50%), Gaps = 6/168 (3%)
Query: 6 MWYIDICDYRSYFDSLRLATHYQVDLTTDASSVTQGALAGGASGGLKECASCGKRITERF 65
M + D RS + R T T A S T A + S G CASCG+ I +R+
Sbjct: 50 MPHSDGESRRSNME--REDTSPGSPSTPSAGSPTSTA-SSVPSTGKNTCASCGQEILDRY 106
Query: 66 LLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVI 125
LLK +L WH CL+C C L + S+ Y K I CK DY FGT CA C + I
Sbjct: 107 LLKVNNLIWHVRCLECSVCRTSLRQ-HSSCYIKNKEIFCKMDYFSRFGTK--CARCGRQI 163
Query: 126 PAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
A + V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 164 YASDWVRRARGNAYHLACFACYSCKRQLSTGEEFGLVEEKVLCRIHYD 211
>gi|2641222|gb|AAB86860.1| homeobox protein LIM-3 [Danio rerio]
Length = 374
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 73/121 (60%), Gaps = 6/121 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RF+LK LD WH CLKC C +L + + + + + CK D+ + FG
Sbjct: 4 CAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQSQLAD---KCFSRGDSVYCKDDFFKRFG 60
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDY 172
T CAAC + IP ++V RA++ VYHL C AC C + GD +YL D++++C+ DY
Sbjct: 61 TK--CAACQQGIPPTQVVRRAQDFVYHLHCNACIVCKRQLATGDEYYLMEDSRLVCKADY 118
Query: 173 E 173
E
Sbjct: 119 E 119
>gi|410979495|ref|XP_003996119.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx3 [Felis
catus]
Length = 309
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 76/129 (58%), Gaps = 9/129 (6%)
Query: 49 GGLKE---CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCK 105
GG +E CA C + I +RF+LKALD WH CL+C C L E + + + CK
Sbjct: 26 GGTREIPLCAGCDQHILDRFILKALDRHWHSKCLRCSDCHAPLAE---RCFSRGESVYCK 82
Query: 106 RDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRF-YLCDN 164
D+ + FGT CAAC IP ++V RA++ VYHL CFAC C + GD F ++ D+
Sbjct: 83 DDFFKRFGTK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFSFMEDS 140
Query: 165 KILCEYDYE 173
+++C+ DYE
Sbjct: 141 RLVCKADYE 149
>gi|431908379|gb|ELK11976.1| LIM domain only protein 3 [Pteropus alecto]
Length = 106
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/85 (58%), Positives = 61/85 (71%), Gaps = 1/85 (1%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLR
Sbjct: 11 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRT 70
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKN 136
+ ++P +RA+N
Sbjct: 71 ASSDSLLTNYDHLLPLLS-DLRAQN 94
>gi|371573886|gb|AEX38313.1| Lhx3 [Mnemiopsis leidyi]
Length = 507
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 84/156 (53%), Gaps = 8/156 (5%)
Query: 28 QVDLTTDASSVTQGALAGGASGGL-KECASCGKRITERFLLKALDLFWHEDCLKCGCCDC 86
L A Q + G +G + CA C + IT+RF+LK ++ WH CLKC C
Sbjct: 99 PTSLPNSAVKFEQTSFHGDVTGAVVPRCAGCDQPITDRFILKVMEKNWHSACLKCHDC-- 156
Query: 87 RLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFAC 146
L ++ + + + + CK D+ + +GT CA C KVIP ++V RA +V+H++CF C
Sbjct: 157 -LAQLTDKCFSRGDFVYCKDDFYKRYGTK--CAKCEKVIPPSQVVRRAGGHVFHMDCFVC 213
Query: 147 QQCNHRFCVGDRFYLC-DNKILCEYDYEE-RQVFAN 180
C+ GD FY DN+++C DY+ + +AN
Sbjct: 214 IICSRTLNTGDEFYFVDDNQLVCRSDYDNFKTQYAN 249
>gi|348505012|ref|XP_003440055.1| PREDICTED: LIM/homeobox protein Lhx8-like [Oreochromis niloticus]
Length = 338
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 79/143 (55%), Gaps = 5/143 (3%)
Query: 31 LTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGE 90
L +ASS+ A++ G CASC + I +++LLK DL WH CL C C LG
Sbjct: 34 LDEEASSLQ--AMSSAPLLGRTVCASCNEEIVDKYLLKVNDLCWHVRCLSCSVCQTSLGS 91
Query: 91 VGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCN 150
++ Y K + CK DY R +GT +CA C + I + + V RAK NVYHL CFAC C
Sbjct: 92 -HTSCYIKEKEVFCKLDYFRRYGT--WCACCGRNIHSTDWVRRAKGNVYHLACFACFSCK 148
Query: 151 HRFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 149 RQLSTGEEFALVEGKVLCRVHYD 171
>gi|328787176|ref|XP_392622.4| PREDICTED: protein apterous [Apis mellifera]
Length = 560
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 72/121 (59%), Gaps = 3/121 (2%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRL-GEVGSTLYQKANLILCKRDYLRLF 112
CA CG RI++RF L+A+D WH CL+C C L GEV T + + I CK+DY R+F
Sbjct: 188 CAGCGLRISDRFYLQAVDRRWHAACLQCSHCRQGLDGEV--TCFSRDGNIYCKKDYYRMF 245
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
G+ CA C I A E+VMRA++ V+H+ CF+C C GD F + D +LC Y
Sbjct: 246 GSMKRCARCHAAILASELVMRARDLVFHVRCFSCAACAVPLTKGDHFGMRDGAVLCRLHY 305
Query: 173 E 173
E
Sbjct: 306 E 306
>gi|120537751|gb|AAI29375.1| Lhx4 protein [Danio rerio]
Length = 244
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 75/124 (60%), Gaps = 6/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +CA C + I ++F+LK LD WH CLKC C L + + +A + CK D+ +
Sbjct: 28 IPQCAGCSQHILDKFILKVLDRHWHSKCLKCADCHALLAD---KCFSRAGNVYCKEDFFK 84
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
FGT CA+C + IP ++V +A++ VYHL CFAC C+ + GD FYL D +++C+
Sbjct: 85 RFGTK--CASCQQGIPPTQVVRKAQDFVYHLHCFACVMCSRQLATGDEFYLMEDGRLVCK 142
Query: 170 YDYE 173
DYE
Sbjct: 143 EDYE 146
>gi|301608740|ref|XP_002933954.1| PREDICTED: LIM homeobox transcription factor 1-beta-like [Xenopus
(Silurana) tropicalis]
Length = 533
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 78/134 (58%), Gaps = 6/134 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA CG I++RFLL+ D WHE C+KC C L + T Y + + CK DY +LF
Sbjct: 186 CAGCGNTISDRFLLRVNDRSWHECCVKCAAC---LQILSGTCYYRNRQLYCKEDYDKLFA 242
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
T C +C K + E++MR +NVYH+ CF C +C R GD F L + ++LC DYE
Sbjct: 243 TK--CNSCLKTVLPSELIMRVLSNVYHVACFFCCECERRLERGDEFVLKEGQLLCRSDYE 300
Query: 174 -ERQVFANIAYNPS 186
E+++ + ++ PS
Sbjct: 301 REKEMLSALSLTPS 314
>gi|291237424|ref|XP_002738638.1| PREDICTED: Lim homeobox transcription factor [Saccoglossus
kowalevskii]
Length = 441
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 71/121 (58%), Gaps = 5/121 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFL++ ++ WHE CL+C C L + Y K + CK DY +LFG
Sbjct: 41 CAGCQQPIEDRFLMRVMENSWHEQCLQCSVCQSPLSR---SCYFKDRKLYCKGDYEKLFG 97
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
T C C + I + E+VMRA NVYHL CF C CN R GD F + DN++ C+ DYE
Sbjct: 98 TK--CNGCLQSITSNELVMRALCNVYHLRCFNCIICNQRLQKGDEFVVRDNQLFCKVDYE 155
Query: 174 E 174
+
Sbjct: 156 K 156
>gi|350404757|ref|XP_003487210.1| PREDICTED: protein apterous-like [Bombus impatiens]
Length = 550
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 72/121 (59%), Gaps = 3/121 (2%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRL-GEVGSTLYQKANLILCKRDYLRLF 112
CA CG RI++RF L+A+D WH CL+C C L GEV T + + I CK+DY R+F
Sbjct: 175 CAGCGLRISDRFYLQAVDRRWHAACLQCSHCRQGLDGEV--TCFSRDGNIYCKKDYYRMF 232
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
G+ CA C I A E+VMRA++ V+H+ CF+C C GD F + D +LC Y
Sbjct: 233 GSMKRCARCHAAILASELVMRARDLVFHVRCFSCAACAVPLTKGDHFGMRDGAVLCRLHY 292
Query: 173 E 173
E
Sbjct: 293 E 293
>gi|157127146|ref|XP_001661055.1| lim homeobox protein [Aedes aegypti]
gi|108873020|gb|EAT37245.1| AAEL010744-PA [Aedes aegypti]
Length = 459
Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 73/124 (58%), Gaps = 6/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +C C + I +RF+LK D WH CL+C C +L E + + + CK D+ +
Sbjct: 60 IPKCGGCHELILDRFILKVSDRTWHAKCLQCSDCHIQLNE---KCFARNGQLFCKDDFFK 116
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
+GT CAAC IP ++V RA++NVYHL+CF C C+ + GD FYL D K++C+
Sbjct: 117 RYGTK--CAACDLGIPPTQVVRRAQDNVYHLQCFMCSMCSRQLNTGDEFYLIEDGKLICK 174
Query: 170 YDYE 173
DYE
Sbjct: 175 PDYE 178
>gi|157115167|ref|XP_001652548.1| lim homeobox protein [Aedes aegypti]
gi|108876992|gb|EAT41217.1| AAEL007120-PA [Aedes aegypti]
Length = 459
Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 73/124 (58%), Gaps = 6/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +C C + I +RF+LK D WH CL+C C +L E + + + CK D+ +
Sbjct: 60 IPKCGGCHELILDRFILKVSDRTWHAKCLQCSDCHIQLNE---KCFARNGQLFCKDDFFK 116
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
+GT CAAC IP ++V RA++NVYHL+CF C C+ + GD FYL D K++C+
Sbjct: 117 RYGTK--CAACDLGIPPTQVVRRAQDNVYHLQCFMCSMCSRQLNTGDEFYLIEDGKLICK 174
Query: 170 YDYE 173
DYE
Sbjct: 175 PDYE 178
>gi|380027050|ref|XP_003697249.1| PREDICTED: protein apterous-like [Apis florea]
Length = 555
Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 71/121 (58%), Gaps = 3/121 (2%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRL-GEVGSTLYQKANLILCKRDYLRLF 112
CA CG RI++RF L+A+D WH CL+C C L GEV T + + I CK+DY R+F
Sbjct: 186 CAGCGLRISDRFYLQAVDRRWHAACLQCSHCRQGLDGEV--TCFSRDGNIYCKKDYYRMF 243
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
G+ CA C I A E+VMRA+ V+H+ CF+C C GD F + D +LC Y
Sbjct: 244 GSMKRCARCHAAILASELVMRARELVFHVRCFSCAACAVPLTKGDHFGMRDGAVLCRLHY 303
Query: 173 E 173
E
Sbjct: 304 E 304
>gi|6572499|gb|AAF17291.1| LHX3 protein [Homo sapiens]
gi|6572501|gb|AAF17292.1| LHX3 protein [Homo sapiens]
Length = 370
Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 71/121 (58%), Gaps = 6/121 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA + I +RF+LKALD WH CLKC C L E + + + CK D+ + FG
Sbjct: 4 CAGRDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFKRFG 60
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDY 172
T CAAC IP ++V RA++ VYHL CFAC C + GD FYL D++++C+ DY
Sbjct: 61 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 118
Query: 173 E 173
E
Sbjct: 119 E 119
>gi|2149584|gb|AAC53336.1| LIM-homeobox protein [Mus musculus]
Length = 190
Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 75/121 (61%), Gaps = 6/121 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I ++F+LK LD WH CLKC DC++ ++ + +A + CK D+ + FG
Sbjct: 1 CAGCNQHILDKFILKVLDRHWHSSCLKCA--DCQM-QLADRCFSRAGSVYCKEDFFKRFG 57
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDY 172
T C AC + IP ++V +A++ VYHL CFAC CN + GD FYL D +++C+ DY
Sbjct: 58 TK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDY 115
Query: 173 E 173
E
Sbjct: 116 E 116
>gi|449266486|gb|EMC77539.1| LIM/homeobox protein Lhx4, partial [Columba livia]
Length = 236
Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 75/124 (60%), Gaps = 6/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +CA C + I ++F+LK LD WH CLKC C +L + + +A + CK D+ +
Sbjct: 2 IPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFK 58
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
FGT C AC + IP ++V +A++ VYHL CFAC C+ + GD FYL D +++C+
Sbjct: 59 RFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICSRQLATGDEFYLMEDGRLVCK 116
Query: 170 YDYE 173
DYE
Sbjct: 117 EDYE 120
>gi|345312248|ref|XP_001512401.2| PREDICTED: rhombotin-1-like, partial [Ornithorhynchus anatinus]
Length = 88
Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 48/68 (70%), Positives = 55/68 (80%)
Query: 43 LAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLI 102
L+ G K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLI
Sbjct: 21 LSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLI 80
Query: 103 LCKRDYLR 110
LC+RDYLR
Sbjct: 81 LCRRDYLR 88
>gi|190613352|pdb|2JTN|A Chain A, Nmr Solution Structure Of A Ldb1-Lid:lhx3-Lim Complex
Length = 182
Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 72/121 (59%), Gaps = 6/121 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RF+LKALD WH CLKC C L E + + + CK D+ + FG
Sbjct: 63 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAE---RCFSRGESVYCKDDFFKRFG 119
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDY 172
T CAAC IP ++V RA++ VYHL CFAC C + GD FYL D++++C+ DY
Sbjct: 120 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 177
Query: 173 E 173
E
Sbjct: 178 E 178
>gi|348533440|ref|XP_003454213.1| PREDICTED: LIM/homeobox protein Lhx6-like [Oreochromis niloticus]
Length = 392
Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 13 DYRSYFDSLRLATHYQVDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDL 72
D ++ F A+ +V + SS ++ A +CASCG I +R+LLK +L
Sbjct: 73 DAKTQFIHFPFASKSEVKKESGESSPSEAACLCPPPAAKNQCASCGMEIHDRYLLKVNNL 132
Query: 73 FWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVM 132
WH CL+C C L + S+ Y K I CK DY FGT CA C + + A + V
Sbjct: 133 NWHLGCLECSVCRASLRQ-HSSCYVKNKEIYCKLDYFSRFGTK--CAQCGRQVYASDWVR 189
Query: 133 RAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
RA+ +VYHL CFAC C + G+ F L + ++LC Y+
Sbjct: 190 RARGSVYHLACFACFSCKRQLSTGEEFGLVEGRVLCRSHYD 230
>gi|118343872|ref|NP_001071755.1| LIM/homeobox protein Lhx3a type 1 [Ciona intestinalis]
gi|70570105|dbj|BAE06537.1| transcription factor protein [Ciona intestinalis]
Length = 596
Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 74/124 (59%), Gaps = 6/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +C C I +R++LK D WH CLKC C +L + + + + + CK D+ +
Sbjct: 192 IPKCTGCDHHIFDRYILKVQDKPWHSQCLKCNDCGRQLTD---KCFSRGSYVYCKEDFFK 248
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDN-KILCE 169
FGT C+ C IP ++V RA++NVYHLECF C C+ + GD+FYL D+ +++C+
Sbjct: 249 RFGTK--CSGCELAIPPTQVVRRAQDNVYHLECFRCFMCSEQLGTGDQFYLLDDSRLVCK 306
Query: 170 YDYE 173
DYE
Sbjct: 307 KDYE 310
>gi|170055943|ref|XP_001863808.1| lim homeobox protein [Culex quinquefasciatus]
gi|167875776|gb|EDS39159.1| lim homeobox protein [Culex quinquefasciatus]
Length = 456
Score = 102 bits (255), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 73/124 (58%), Gaps = 6/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +C C + I +RF+LK D WH CL+C C +L E + + + CK D+ +
Sbjct: 63 IPKCGGCHELILDRFILKVSDRTWHAKCLQCSECHVQLNE---KCFARNGQLFCKDDFFK 119
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
+GT CAAC IP ++V RA++NVYHL+CF C C+ + GD FYL D K++C+
Sbjct: 120 RYGTK--CAACDLGIPPTQVVRRAQDNVYHLQCFMCSMCSRQLNTGDEFYLMEDGKLVCK 177
Query: 170 YDYE 173
DYE
Sbjct: 178 PDYE 181
>gi|449268911|gb|EMC79740.1| LIM homeobox transcription factor 1-alpha [Columba livia]
Length = 343
Score = 102 bits (254), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 77/134 (57%), Gaps = 6/134 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C I++RFLL+ + WHE C+KC C L + T Y + + CK DY +LF
Sbjct: 5 CAGCDTPISDRFLLRVNERSWHEGCVKCAVC---LQPLAGTCYCRNRQLYCKHDYEKLFQ 61
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
T C++C K I E++MR NVYH+ CF C +C R GD F L + ++LC DYE
Sbjct: 62 TK--CSSCLKAIAPSELIMRVLENVYHVHCFYCCECERRLQRGDEFVLKEGQLLCRSDYE 119
Query: 174 -ERQVFANIAYNPS 186
E+++ + I+ P+
Sbjct: 120 KEKEMLSAISPAPT 133
>gi|24585132|ref|NP_724161.1| Lim3, isoform B [Drosophila melanogaster]
gi|386769865|ref|NP_001246085.1| Lim3, isoform C [Drosophila melanogaster]
gi|386769867|ref|NP_001246086.1| Lim3, isoform D [Drosophila melanogaster]
gi|386769871|ref|NP_001246088.1| Lim3, isoform F [Drosophila melanogaster]
gi|22946804|gb|AAF53758.2| Lim3, isoform B [Drosophila melanogaster]
gi|124248338|gb|ABM92789.1| FI01025p [Drosophila melanogaster]
gi|383291570|gb|AFH03759.1| Lim3, isoform C [Drosophila melanogaster]
gi|383291571|gb|AFH03760.1| Lim3, isoform D [Drosophila melanogaster]
gi|383291573|gb|AFH03762.1| Lim3, isoform F [Drosophila melanogaster]
Length = 520
Score = 102 bits (254), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 74/125 (59%), Gaps = 6/125 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +C C + I +RF+LK L+ WH CL+C C G++ + + + CK D+ +
Sbjct: 119 IPKCGGCHELILDRFILKVLERTWHAKCLQCSECH---GQLNDKCFARNGQLFCKEDFFK 175
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
+GT C+AC IP ++V RA++NVYHL+CF C C+ GD FYL D K++C+
Sbjct: 176 RYGTK--CSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICK 233
Query: 170 YDYEE 174
DYEE
Sbjct: 234 RDYEE 238
>gi|195345019|ref|XP_002039073.1| GM17030 [Drosophila sechellia]
gi|194134203|gb|EDW55719.1| GM17030 [Drosophila sechellia]
Length = 523
Score = 102 bits (254), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 74/125 (59%), Gaps = 6/125 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +C C + I +RF+LK L+ WH CL+C C G++ + + + CK D+ +
Sbjct: 124 IPKCGGCHELILDRFILKVLERTWHAKCLQCSECH---GQLNDKCFARNGQLFCKEDFFK 180
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
+GT C+AC IP ++V RA++NVYHL+CF C C+ GD FYL D K++C+
Sbjct: 181 RYGTK--CSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICK 238
Query: 170 YDYEE 174
DYEE
Sbjct: 239 RDYEE 243
>gi|225581041|gb|ACN94618.1| GA10505 [Drosophila miranda]
Length = 499
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 74/125 (59%), Gaps = 6/125 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +C C + I +RF+LK L+ WH CL+C C G++ + + + CK D+ +
Sbjct: 95 IPKCGGCHELILDRFILKVLERTWHAKCLQCSECH---GQLNDKCFARNGQLFCKEDFFK 151
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
+GT C+AC IP ++V RA++NVYHL+CF C C+ GD FYL D K++C+
Sbjct: 152 RYGTK--CSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICK 209
Query: 170 YDYEE 174
DYEE
Sbjct: 210 RDYEE 214
>gi|442628307|ref|NP_001260559.1| Lim3, isoform G [Drosophila melanogaster]
gi|440213916|gb|AGB93094.1| Lim3, isoform G [Drosophila melanogaster]
Length = 555
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 74/125 (59%), Gaps = 6/125 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +C C + I +RF+LK L+ WH CL+C C G++ + + + CK D+ +
Sbjct: 119 IPKCGGCHELILDRFILKVLERTWHAKCLQCSECH---GQLNDKCFARNGQLFCKEDFFK 175
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
+GT C+AC IP ++V RA++NVYHL+CF C C+ GD FYL D K++C+
Sbjct: 176 RYGTK--CSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICK 233
Query: 170 YDYEE 174
DYEE
Sbjct: 234 RDYEE 238
>gi|143347423|gb|ABO93221.1| Islet [Platynereis dumerilii]
Length = 414
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 72/121 (59%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLF 112
C CG +I ++++L+ A DL WH CLKC CD L E T + + CKRDY RLF
Sbjct: 22 CVGCGSKIQDQYILRVAPDLEWHAACLKCADCDQFLDET-CTCFVREGKTYCKRDYARLF 80
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
GT CA CT+ + VMRA+N +YH++CF C C+ + GD F L D+ + C+ D+
Sbjct: 81 GTK--CARCTESFSKNDFVMRARNKIYHIDCFRCVACSRQLIPGDEFALRDDGLFCKSDH 138
Query: 173 E 173
E
Sbjct: 139 E 139
>gi|432853477|ref|XP_004067726.1| PREDICTED: LIM/homeobox protein Lhx8 [Oryzias latipes]
Length = 338
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 74/140 (52%), Gaps = 3/140 (2%)
Query: 34 DASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGS 93
D + + A+A CA+C + I +++LLK DL WH CL C C LG S
Sbjct: 35 DEDAASPRAMASAPLHCRSVCANCNEEIVDKYLLKVNDLCWHVRCLSCSVCQTSLGSHAS 94
Query: 94 TLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRF 153
Y K I CK DY R +GT +CA C + I + + V RAK NVYHL CFAC C +
Sbjct: 95 -CYIKEKEIFCKLDYFRRYGT--WCACCGRNIHSTDWVRRAKGNVYHLACFACFSCKRQL 151
Query: 154 CVGDRFYLCDNKILCEYDYE 173
G+ F L + K+LC Y+
Sbjct: 152 STGEEFALVEGKVLCRIHYD 171
>gi|82524343|ref|NP_001032320.1| LIM/homeobox protein Lhx9 isoform 2 [Danio rerio]
gi|76667071|dbj|BAE45355.1| LIM homeodomain type transcription factor Lhx9 [Danio rerio]
Length = 395
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 70/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 71 CAGCGGKISDRYYLHAVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF 128
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA+++VYHL CF C CN GD F + DN + C +
Sbjct: 129 -SVQRCAHCHLGISASEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRVHF 187
Query: 173 E 173
E
Sbjct: 188 E 188
>gi|194759358|ref|XP_001961916.1| GF15212 [Drosophila ananassae]
gi|190615613|gb|EDV31137.1| GF15212 [Drosophila ananassae]
Length = 444
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 74/125 (59%), Gaps = 6/125 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +C C + I +RF+LK L+ WH CL+C C G++ + + + CK D+ +
Sbjct: 39 IPKCGGCHELILDRFILKVLERTWHAKCLQCSECH---GQLNDKCFARNGQLFCKEDFFK 95
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
+GT C+AC IP ++V RA++NVYHL+CF C C+ GD FYL D K++C+
Sbjct: 96 RYGTK--CSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICK 153
Query: 170 YDYEE 174
DYEE
Sbjct: 154 RDYEE 158
>gi|386769869|ref|NP_001246087.1| Lim3, isoform E [Drosophila melanogaster]
gi|383291572|gb|AFH03761.1| Lim3, isoform E [Drosophila melanogaster]
Length = 405
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 74/125 (59%), Gaps = 6/125 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +C C + I +RF+LK L+ WH CL+C C G++ + + + CK D+ +
Sbjct: 4 IPKCGGCHELILDRFILKVLERTWHAKCLQCSECH---GQLNDKCFARNGQLFCKEDFFK 60
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
+GT C+AC IP ++V RA++NVYHL+CF C C+ GD FYL D K++C+
Sbjct: 61 RYGTK--CSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICK 118
Query: 170 YDYEE 174
DYEE
Sbjct: 119 RDYEE 123
>gi|4106560|gb|AAD02889.1| LIM homeodomain transcription factor [Drosophila melanogaster]
Length = 440
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 74/125 (59%), Gaps = 6/125 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +C C + I +RF+LK L+ WH CL+C C G++ + + + CK D+ +
Sbjct: 39 IPKCGGCHELILDRFILKVLERTWHAKCLQCSECH---GQLNDKCFARNGQLFCKEDFFK 95
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
+GT C+AC IP ++V RA++NVYHL+CF C C+ GD FYL D K++C+
Sbjct: 96 RYGTK--CSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICK 153
Query: 170 YDYEE 174
DYEE
Sbjct: 154 RDYEE 158
>gi|17136270|ref|NP_476606.1| Lim3, isoform A [Drosophila melanogaster]
gi|7298537|gb|AAF53756.1| Lim3, isoform A [Drosophila melanogaster]
Length = 440
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 74/125 (59%), Gaps = 6/125 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +C C + I +RF+LK L+ WH CL+C C G++ + + + CK D+ +
Sbjct: 39 IPKCGGCHELILDRFILKVLERTWHAKCLQCSECH---GQLNDKCFARNGQLFCKEDFFK 95
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
+GT C+AC IP ++V RA++NVYHL+CF C C+ GD FYL D K++C+
Sbjct: 96 RYGTK--CSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICK 153
Query: 170 YDYEE 174
DYEE
Sbjct: 154 RDYEE 158
>gi|195580083|ref|XP_002079885.1| GD21780 [Drosophila simulans]
gi|194191894|gb|EDX05470.1| GD21780 [Drosophila simulans]
Length = 438
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 74/125 (59%), Gaps = 6/125 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +C C + I +RF+LK L+ WH CL+C C G++ + + + CK D+ +
Sbjct: 39 IPKCGGCHELILDRFILKVLERTWHAKCLQCSECH---GQLNDKCFARNGQLFCKEDFFK 95
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
+GT C+AC IP ++V RA++NVYHL+CF C C+ GD FYL D K++C+
Sbjct: 96 RYGTK--CSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICK 153
Query: 170 YDYEE 174
DYEE
Sbjct: 154 RDYEE 158
>gi|194879752|ref|XP_001974294.1| GG21652 [Drosophila erecta]
gi|190657481|gb|EDV54694.1| GG21652 [Drosophila erecta]
Length = 442
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 74/125 (59%), Gaps = 6/125 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +C C + I +RF+LK L+ WH CL+C C G++ + + + CK D+ +
Sbjct: 39 IPKCGGCHELILDRFILKVLERTWHAKCLQCSECH---GQLNDKCFARNGQLFCKEDFFK 95
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
+GT C+AC IP ++V RA++NVYHL+CF C C+ GD FYL D K++C+
Sbjct: 96 RYGTK--CSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICK 153
Query: 170 YDYEE 174
DYEE
Sbjct: 154 RDYEE 158
>gi|195438224|ref|XP_002067037.1| GK24239 [Drosophila willistoni]
gi|194163122|gb|EDW78023.1| GK24239 [Drosophila willistoni]
Length = 448
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 74/125 (59%), Gaps = 6/125 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +C C + I +RF+LK L+ WH CL+C C G++ + + + CK D+ +
Sbjct: 39 IPKCGGCHELILDRFILKVLERTWHAKCLQCSECH---GQLNDKCFARNGQLFCKEDFFK 95
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
+GT C+AC IP ++V RA++NVYHL+CF C C+ GD FYL D K++C+
Sbjct: 96 RYGTK--CSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICK 153
Query: 170 YDYEE 174
DYEE
Sbjct: 154 RDYEE 158
>gi|195484367|ref|XP_002090664.1| GE12672 [Drosophila yakuba]
gi|194176765|gb|EDW90376.1| GE12672 [Drosophila yakuba]
Length = 442
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 74/125 (59%), Gaps = 6/125 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +C C + I +RF+LK L+ WH CL+C C G++ + + + CK D+ +
Sbjct: 39 IPKCGGCHELILDRFILKVLERTWHAKCLQCSECH---GQLNDKCFARNGQLFCKEDFFK 95
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
+GT C+AC IP ++V RA++NVYHL+CF C C+ GD FYL D K++C+
Sbjct: 96 RYGTK--CSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICK 153
Query: 170 YDYEE 174
DYEE
Sbjct: 154 RDYEE 158
>gi|62859451|ref|NP_001015899.1| LIM homeobox 8 [Xenopus (Silurana) tropicalis]
gi|89268071|emb|CAJ83129.1| LIM homeobox 7/8 [Xenopus (Silurana) tropicalis]
gi|110645724|gb|AAI18740.1| LIM homeobox 8 [Xenopus (Silurana) tropicalis]
Length = 374
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 72/130 (55%), Gaps = 3/130 (2%)
Query: 44 AGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLIL 103
A G + G C++CG I +++LLK DL WH CL C C LG ++ Y K I
Sbjct: 83 AAGLNQGKSVCSNCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIY 141
Query: 104 CKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD 163
CK DY R +GT C+ C + I A + V RAK NVYHL CFAC C + G+ F L +
Sbjct: 142 CKLDYFRRYGTR--CSRCGRHIHATDWVRRAKGNVYHLACFACYSCKRQLSTGEEFALVE 199
Query: 164 NKILCEYDYE 173
K+LC Y+
Sbjct: 200 EKVLCRVHYD 209
>gi|260794981|ref|XP_002592485.1| LIM class homeodomain transcription factor, apterous subclass
[Branchiostoma floridae]
gi|229277705|gb|EEN48496.1| LIM class homeodomain transcription factor, apterous subclass
[Branchiostoma floridae]
Length = 452
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 72/121 (59%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG RI +R+ L A+D WH CLKC C+C+L E T + K I CK+DY R F
Sbjct: 60 CAGCGGRIVDRYYLLAVDKQWHLHCLKC--CECKLRLESELTCFAKDGSIYCKQDYYRRF 117
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA++ V+HL CF C+ CN GD++ + + + C YDY
Sbjct: 118 -SVKRCARCHLGISASEMVMRARDLVFHLNCFMCETCNRPLTTGDQYGMRGDTVYCRYDY 176
Query: 173 E 173
E
Sbjct: 177 E 177
>gi|405977546|gb|EKC41989.1| LIM/homeobox protein Lhx3 [Crassostrea gigas]
Length = 432
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 76/157 (48%), Gaps = 37/157 (23%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +CA CG+ I +RF+LK LD WH CL+C C RL + + K + CK D+ R
Sbjct: 44 IPKCAGCGEPILDRFILKVLDRSWHSRCLQCHDCHARLSD---KCFSKGEKVFCKDDFFR 100
Query: 111 -----------LFGTTG----------------------YCAACTKVIPAFEMVMRAKNN 137
L G CA C K IP E+V RA++N
Sbjct: 101 WSYVYLSMQPDLIGPLSDHGVTRPPKTVRERVGALRYGTKCAGCEKGIPPTEVVRRAQDN 160
Query: 138 VYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 173
VYHLECFAC C+ + GD FYL D K++C+ DYE
Sbjct: 161 VYHLECFACLMCSRQLNTGDEFYLMEDRKLVCKADYE 197
>gi|195398039|ref|XP_002057632.1| GJ17996 [Drosophila virilis]
gi|194141286|gb|EDW57705.1| GJ17996 [Drosophila virilis]
Length = 545
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 74/125 (59%), Gaps = 6/125 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +C C + I +RF+LK L+ WH CL+C C +L + + + + CK D+ +
Sbjct: 123 IPKCGGCHELILDRFILKVLERTWHAKCLQCSECHAQLND---KCFARNGQLFCKEDFFK 179
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
+GT C+AC IP ++V RA++NVYHL+CF C C+ GD FYL D K++C+
Sbjct: 180 RYGTK--CSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICK 237
Query: 170 YDYEE 174
DYEE
Sbjct: 238 RDYEE 242
>gi|332018691|gb|EGI59263.1| Protein apterous [Acromyrmex echinatior]
Length = 558
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 71/121 (58%), Gaps = 3/121 (2%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRL-GEVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++RF L+A+D WH CL+C C L GEV T + + I CK+DY R+F
Sbjct: 184 CAGCGLKISDRFYLQAVDKRWHAACLQCSHCRQGLDGEV--TCFSRDGNIYCKKDYYRMF 241
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
G+ CA C I A E+VMRA+ V+H+ CF+C C GD F + D +LC Y
Sbjct: 242 GSMKRCARCQAAILASELVMRARELVFHVRCFSCAACAVLLMKGDHFGMRDGAVLCRLHY 301
Query: 173 E 173
E
Sbjct: 302 E 302
>gi|47223723|emb|CAF99332.1| unnamed protein product [Tetraodon nigroviridis]
Length = 381
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 69/124 (55%), Gaps = 3/124 (2%)
Query: 50 GLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYL 109
G CASCG+ I +R+LLK +L WH CL+C C L + S+ Y K I CK DY
Sbjct: 42 GKNVCASCGQEILDRYLLKVNNLIWHVRCLECSVCRTSLRQ-HSSCYIKNKEIFCKMDYF 100
Query: 110 RLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCE 169
FGT CA C + I A + V RA+ N YHL CFAC C + G+ F L + K+LC
Sbjct: 101 SRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACYSCKRQLSTGEEFGLVEEKVLCR 158
Query: 170 YDYE 173
Y+
Sbjct: 159 IHYD 162
>gi|189237525|ref|XP_973330.2| PREDICTED: similar to lim homeobox protein [Tribolium castaneum]
Length = 448
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 74/124 (59%), Gaps = 6/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +C C + I +RF+LK D WH CL+C DCR+ ++ + + + CK D+ +
Sbjct: 98 IPKCGGCHELILDRFILKVADRTWHAKCLQC--SDCRI-QLTDKCFARNGQLFCKEDFFK 154
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
FGT CA C IP ++V RA++NVYHL+CF+C C + GD FYL D K++C+
Sbjct: 155 RFGTK--CAGCDLGIPPTQVVRRAQDNVYHLQCFSCVMCARQLNTGDEFYLMEDRKLVCK 212
Query: 170 YDYE 173
DYE
Sbjct: 213 PDYE 216
>gi|123907024|sp|Q1LWV4.1|LHX9_DANRE RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
9
gi|94732381|emb|CAK04966.1| novel protein similar to vertebrate LIM homeobox 9 (LHX9) [Danio
rerio]
gi|190339118|gb|AAI63023.1| Lhx9 protein [Danio rerio]
gi|190339147|gb|AAI63060.1| Lhx9 protein [Danio rerio]
gi|190339149|gb|AAI63073.1| Lhx9 protein [Danio rerio]
Length = 396
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 70/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 71 CAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF 128
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA+++VYHL CF C CN GD F + DN + C +
Sbjct: 129 -SVQRCARCHLGISASEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRVHF 187
Query: 173 E 173
E
Sbjct: 188 E 188
>gi|194378152|dbj|BAG57826.1| unnamed protein product [Homo sapiens]
Length = 80
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/59 (77%), Positives = 52/59 (88%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLR
Sbjct: 22 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLR 80
>gi|158299816|ref|XP_319836.3| AGAP009088-PA [Anopheles gambiae str. PEST]
gi|157013700|gb|EAA14726.3| AGAP009088-PA [Anopheles gambiae str. PEST]
Length = 389
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 74/124 (59%), Gaps = 6/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +C C + I +RF+LK D WH CL+C C +L E + + + CK D+ +
Sbjct: 38 IPKCGGCHELILDRFILKVSDRTWHAKCLQCSECRVQLNE---KCFARNGQLFCKDDFFK 94
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDN-KILCE 169
+GT CAAC IP ++V RA++NVYHL+CF C C+ + GD FYL ++ K++C+
Sbjct: 95 RYGTK--CAACDLGIPPTQVVRRAQDNVYHLQCFMCSMCSRQLNTGDEFYLMEDCKLICK 152
Query: 170 YDYE 173
DYE
Sbjct: 153 PDYE 156
>gi|443690540|gb|ELT92649.1| hypothetical protein CAPTEDRAFT_219057 [Capitella teleta]
Length = 432
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 79/135 (58%), Gaps = 4/135 (2%)
Query: 54 CASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLF 112
C CG +IT++++L+ A DL WH CL+C C+ L E T + + CKRDY+RLF
Sbjct: 17 CVGCGSQITDQYILRVAPDLEWHASCLRCTDCNQYLDE-SCTCFVRDGKTYCKRDYVRLF 75
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
GT CA C++ + VMRAKN +YH++CF C C+ + GD F L D+ + C+ D+
Sbjct: 76 GTK--CARCSQSFSKNDFVMRAKNKIYHIDCFRCIACSRQLIPGDEFALRDDGLFCKADH 133
Query: 173 EERQVFANIAYNPSS 187
+ + + + PS
Sbjct: 134 DVVESASTGSITPSP 148
>gi|51571915|ref|NP_001004015.1| LIM/homeobox protein Lhx6 [Danio rerio]
gi|50953777|gb|AAT90495.1| Lhx6 [Danio rerio]
gi|190336767|gb|AAI62225.1| LIM homeobox 6 [Danio rerio]
Length = 375
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/142 (42%), Positives = 75/142 (52%), Gaps = 11/142 (7%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
T+ ASSV S G CASCG I +R+LLK +L WH CL+C C L +
Sbjct: 83 TSTASSV--------PSTGKNVCASCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQ- 133
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S+ Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 134 HSSCYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 191
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 192 QLSTGEEFGLVEEKVLCRIHYD 213
>gi|195050066|ref|XP_001992820.1| GH13485 [Drosophila grimshawi]
gi|193899879|gb|EDV98745.1| GH13485 [Drosophila grimshawi]
Length = 451
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 74/125 (59%), Gaps = 6/125 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +C C + I +RF+LK L+ WH CL+C C +L + + + + CK D+ +
Sbjct: 39 IPKCGGCHELILDRFILKVLERTWHAKCLQCSECHSQLND---KCFARNGQLFCKEDFFK 95
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
+GT C+AC IP ++V RA++NVYHL+CF C C+ GD FYL D K++C+
Sbjct: 96 RYGTK--CSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICK 153
Query: 170 YDYEE 174
DYEE
Sbjct: 154 RDYEE 158
>gi|327276679|ref|XP_003223095.1| PREDICTED: LIM/homeobox protein Lhx8-like [Anolis carolinensis]
Length = 379
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 73/130 (56%), Gaps = 3/130 (2%)
Query: 44 AGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLIL 103
+GG + G C+SCG I +++LLK DL WH CL C C LG ++ Y K I
Sbjct: 88 SGGCAPGKCVCSSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIF 146
Query: 104 CKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD 163
CK DY R +GT C+ C + I + + V RAK NVYHL CFAC C + G+ F L +
Sbjct: 147 CKLDYFRRYGTR--CSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVE 204
Query: 164 NKILCEYDYE 173
K+LC Y+
Sbjct: 205 EKVLCRVHYD 214
>gi|107602|pir||C39370 rhombotin homolog 3 - human (fragment)
Length = 72
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/59 (77%), Positives = 52/59 (88%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLR
Sbjct: 14 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLR 72
>gi|270007707|gb|EFA04155.1| hypothetical protein TcasGA2_TC014400 [Tribolium castaneum]
Length = 415
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 74/124 (59%), Gaps = 6/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +C C + I +RF+LK D WH CL+C DCR+ ++ + + + CK D+ +
Sbjct: 65 IPKCGGCHELILDRFILKVADRTWHAKCLQCS--DCRI-QLTDKCFARNGQLFCKEDFFK 121
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
FGT CA C IP ++V RA++NVYHL+CF+C C + GD FYL D K++C+
Sbjct: 122 RFGTK--CAGCDLGIPPTQVVRRAQDNVYHLQCFSCVMCARQLNTGDEFYLMEDRKLVCK 179
Query: 170 YDYE 173
DYE
Sbjct: 180 PDYE 183
>gi|195115252|ref|XP_002002178.1| GI17237 [Drosophila mojavensis]
gi|193912753|gb|EDW11620.1| GI17237 [Drosophila mojavensis]
Length = 449
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 74/125 (59%), Gaps = 6/125 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +C C + I +RF+LK L+ WH CL+C C +L + + + + CK D+ +
Sbjct: 39 IPKCGGCHELILDRFILKVLERTWHAKCLQCSECHAQLND---KCFARNGQLFCKEDFFK 95
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
+GT C+AC IP ++V RA++NVYHL+CF C C+ GD FYL D K++C+
Sbjct: 96 RYGTK--CSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICK 153
Query: 170 YDYEE 174
DYEE
Sbjct: 154 RDYEE 158
>gi|426217051|ref|XP_004002767.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Ovis aries]
Length = 382
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 89/166 (53%), Gaps = 9/166 (5%)
Query: 18 FDSLRLATHYQVDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHED 77
D L++ ++Q + T AS +L G A C C + I++RFLL+ D FWHE
Sbjct: 2 LDGLKMEENFQSAIETSASF---SSLLGRAVSPKSVCEGCQRVISDRFLLRLNDSFWHEQ 58
Query: 78 CLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNN 137
C++C C L +T + + + CK DY +LF C C + I E VMRA+ +
Sbjct: 59 CVQCASCKEPLE---TTCFYRDKKLYCKYDYEKLFAVK--CGGCFEAIAPNEFVMRAQKS 113
Query: 138 VYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFANIA 182
VYHL CF C C + GD F L + ++LC+ DYE ER++ + ++
Sbjct: 114 VYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSLVS 159
>gi|126306172|ref|XP_001363612.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Monodelphis
domestica]
Length = 382
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 89/166 (53%), Gaps = 9/166 (5%)
Query: 18 FDSLRLATHYQVDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHED 77
D L++ ++Q + T AS +L G A C C + I++RFLL+ D FWHE
Sbjct: 2 LDGLKMEENFQSAIETSASF---SSLLGRAVNPKSVCEGCQRVISDRFLLRLNDSFWHEQ 58
Query: 78 CLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNN 137
C++C C L +T + + + CK DY +LF C C + I E VMRA+ +
Sbjct: 59 CVQCASCKEPLE---TTCFYRDKKLYCKYDYEKLFAVK--CGGCFEAIAPNEFVMRAQKS 113
Query: 138 VYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFANIA 182
VYHL CF C C + GD F L + ++LC+ DYE ER++ + ++
Sbjct: 114 VYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSLVS 159
>gi|334853818|gb|AEH05849.1| Lhx3, partial [Capra hircus]
gi|334853820|gb|AEH05850.1| Lhx3, partial [Capra hircus]
Length = 124
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 72/121 (59%), Gaps = 6/121 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RF+LKALD WH CLKC C L E + + + CK D+ + FG
Sbjct: 4 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHAPLAE---RCFSRGESVYCKDDFFKRFG 60
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDY 172
T CAAC IP ++V RA++ VYHL CFAC C + GD FYL D++++C+ DY
Sbjct: 61 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 118
Query: 173 E 173
E
Sbjct: 119 E 119
>gi|253828|gb|AAB22956.1| rhombotin LIM 1 domain [human, brain, Peptide Partial, 69 aa]
gi|55731657|emb|CAH92534.1| hypothetical protein [Pongo abelii]
gi|55733193|emb|CAH93280.1| hypothetical protein [Pongo abelii]
Length = 69
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/59 (77%), Positives = 52/59 (88%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLR
Sbjct: 11 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLR 69
>gi|300797454|ref|NP_001178254.1| LIM homeobox transcription factor 1-alpha [Bos taurus]
gi|296489924|tpg|DAA32037.1| TPA: LIM homeobox transcription factor 1 alpha-like [Bos taurus]
Length = 382
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 89/166 (53%), Gaps = 9/166 (5%)
Query: 18 FDSLRLATHYQVDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHED 77
D L++ ++Q + T AS +L G A C C + I++RFLL+ D FWHE
Sbjct: 2 LDGLKMEENFQSAIETSASF---SSLLGRAVSPKSVCEGCQRVISDRFLLRLNDSFWHEQ 58
Query: 78 CLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNN 137
C++C C L +T + + + CK DY +LF C C + I E VMRA+ +
Sbjct: 59 CVQCASCKEPLE---TTCFYRDKKLYCKYDYEKLFAVK--CGGCFEAIAPNEFVMRAQKS 113
Query: 138 VYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFANIA 182
VYHL CF C C + GD F L + ++LC+ DYE ER++ + ++
Sbjct: 114 VYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSLVS 159
>gi|348565813|ref|XP_003468697.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Cavia
porcellus]
Length = 382
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 89/166 (53%), Gaps = 9/166 (5%)
Query: 18 FDSLRLATHYQVDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHED 77
D L++ ++Q + T AS +L G A C C + I++RFLL+ D FWHE
Sbjct: 2 LDGLKMEENFQSAIETSASF---SSLLGRAVSPKSVCEGCQRVISDRFLLRLNDSFWHEQ 58
Query: 78 CLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNN 137
C++C C L +T + + + CK DY +LF C C + I E VMRA+ +
Sbjct: 59 CVQCASCKEPLE---TTCFYRDKKLYCKYDYEKLFAVK--CGGCFEAIAPNEFVMRAQKS 113
Query: 138 VYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFANIA 182
VYHL CF C C + GD F L + ++LC+ DYE ER++ + ++
Sbjct: 114 VYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSLVS 159
>gi|351696220|gb|EHA99138.1| LIM homeobox transcription factor 1-alpha [Heterocephalus glaber]
Length = 382
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 89/166 (53%), Gaps = 9/166 (5%)
Query: 18 FDSLRLATHYQVDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHED 77
D L++ ++Q + T AS +L G A C C + I++RFLL+ D FWHE
Sbjct: 2 LDGLKMEENFQSAIETSASF---SSLLGRAVSPKSVCEGCQRVISDRFLLRLNDSFWHEQ 58
Query: 78 CLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNN 137
C++C C L +T + + + CK DY +LF C C + I E VMRA+ +
Sbjct: 59 CVQCASCKEPLE---TTCFYRDKKLYCKYDYEKLFAVK--CGGCFEAIAPNEFVMRAQKS 113
Query: 138 VYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFANIA 182
VYHL CF C C + GD F L + ++LC+ DYE ER++ + ++
Sbjct: 114 VYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSLVS 159
>gi|312374311|gb|EFR21889.1| hypothetical protein AND_16082 [Anopheles darlingi]
Length = 568
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 74/124 (59%), Gaps = 6/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +C C + I +RF+LK D WH CL+C C +L E + + + CK D+ +
Sbjct: 172 IPKCGGCHELILDRFILKVSDRTWHAKCLQCSECRVQLNE---KCFARNGQLFCKDDFFK 228
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDN-KILCE 169
+GT CAAC IP ++V RA++NVYHL+CF C C+ + GD +YL ++ K++C+
Sbjct: 229 RYGTK--CAACDLGIPPTQVVRRAQDNVYHLQCFMCSMCSRQLNTGDEYYLMEDCKLICK 286
Query: 170 YDYE 173
DYE
Sbjct: 287 PDYE 290
>gi|311253923|ref|XP_003125689.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Sus
scrofa]
Length = 382
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 89/166 (53%), Gaps = 9/166 (5%)
Query: 18 FDSLRLATHYQVDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHED 77
D L++ ++Q + T AS +L G A C C + I++RFLL+ D FWHE
Sbjct: 2 LDGLKMEENFQSAIETSASF---SSLLGRAVSPKSVCEGCQRVISDRFLLRLNDSFWHEQ 58
Query: 78 CLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNN 137
C++C C L +T + + + CK DY +LF C C + I E VMRA+ +
Sbjct: 59 CVQCASCKEPLE---TTCFYRDKKLYCKYDYEKLFAVK--CGGCFEAIAPNEFVMRAQKS 113
Query: 138 VYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFANIA 182
VYHL CF C C + GD F L + ++LC+ DYE ER++ + ++
Sbjct: 114 VYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSLVS 159
>gi|395530698|ref|XP_003767425.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Sarcophilus
harrisii]
Length = 382
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 89/166 (53%), Gaps = 9/166 (5%)
Query: 18 FDSLRLATHYQVDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHED 77
D L++ ++Q + T AS +L G A C C + I++RFLL+ D FWHE
Sbjct: 2 LDGLKMEENFQSAIETSASF---SSLLGRAVNPKSVCEGCQRVISDRFLLRLNDSFWHEQ 58
Query: 78 CLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNN 137
C++C C L +T + + + CK DY +LF C C + I E VMRA+ +
Sbjct: 59 CVQCASCKEPLE---TTCFYRDKKLYCKYDYEKLFAVK--CGGCFEAIAPNEFVMRAQKS 113
Query: 138 VYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFANIA 182
VYHL CF C C + GD F L + ++LC+ DYE ER++ + ++
Sbjct: 114 VYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSLVS 159
>gi|410986575|ref|XP_003999585.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Felis catus]
Length = 382
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 89/166 (53%), Gaps = 9/166 (5%)
Query: 18 FDSLRLATHYQVDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHED 77
D L++ ++Q + T AS +L G A C C + I++RFLL+ D FWHE
Sbjct: 2 LDGLKMEENFQSAIETSASF---SSLLGRAVSPKSVCEGCQRVISDRFLLRLNDSFWHEQ 58
Query: 78 CLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNN 137
C++C C L +T + + + CK DY +LF C C + I E VMRA+ +
Sbjct: 59 CVQCASCKEPLE---TTCFYRDKKLYCKYDYEKLFAVK--CGGCFEAIAPNEFVMRAQKS 113
Query: 138 VYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFANIA 182
VYHL CF C C + GD F L + ++LC+ DYE ER++ + ++
Sbjct: 114 VYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSLVS 159
>gi|345797790|ref|XP_851352.2| PREDICTED: LIM homeobox transcription factor 1-alpha [Canis lupus
familiaris]
Length = 382
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 89/166 (53%), Gaps = 9/166 (5%)
Query: 18 FDSLRLATHYQVDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHED 77
D L++ ++Q + T AS +L G A C C + I++RFLL+ D FWHE
Sbjct: 2 LDGLKMEENFQSAIETSASF---SSLLGRAVSPKSVCEGCQRVISDRFLLRLNDSFWHEQ 58
Query: 78 CLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNN 137
C++C C L +T + + + CK DY +LF C C + I E VMRA+ +
Sbjct: 59 CVQCASCKEPLE---TTCFYRDKKLYCKYDYEKLFAVK--CGGCFEAIAPNEFVMRAQKS 113
Query: 138 VYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFANIA 182
VYHL CF C C + GD F L + ++LC+ DYE ER++ + ++
Sbjct: 114 VYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSLVS 159
>gi|301615074|ref|XP_002937009.1| PREDICTED: LIM/homeobox protein Lhx4-like [Xenopus (Silurana)
tropicalis]
Length = 385
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 76/130 (58%), Gaps = 6/130 (4%)
Query: 45 GGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILC 104
G + C+ C + I ++F+LK LD WH CLKC C+C++ Y+ N + C
Sbjct: 30 GAMPKEIPRCSGCNEHILDKFILKVLDRHWHSACLKC--CECQVPLAERCFYRAGN-VYC 86
Query: 105 KRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-D 163
K D+ + FGT C AC + IP ++V +A++ VYHL CF+C C+ + GD FYL D
Sbjct: 87 KEDFFKCFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFSCIICSRQLATGDEFYLMED 144
Query: 164 NKILCEYDYE 173
+++C+ DYE
Sbjct: 145 GRLVCKEDYE 154
>gi|291397514|ref|XP_002715925.1| PREDICTED: LIM homeobox transcription factor 1 alpha-like
[Oryctolagus cuniculus]
Length = 382
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 89/166 (53%), Gaps = 9/166 (5%)
Query: 18 FDSLRLATHYQVDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHED 77
D L++ ++Q + T AS +L G A C C + I++RFLL+ D FWHE
Sbjct: 2 LDGLKMEENFQSAIETSASF---SSLLGRAVSPKSVCEGCQRVISDRFLLRLNDSFWHEQ 58
Query: 78 CLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNN 137
C++C C L +T + + + CK DY +LF C C + I E VMRA+ +
Sbjct: 59 CVQCASCKEPLE---TTCFYRDKKLYCKYDYEKLFAVK--CGGCFEAIAPNEFVMRAQKS 113
Query: 138 VYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFANIA 182
VYHL CF C C + GD F L + ++LC+ DYE ER++ + ++
Sbjct: 114 VYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSLVS 159
>gi|62955397|ref|NP_001017710.1| LIM/homeobox protein Lhx9 isoform 1 [Danio rerio]
gi|62205415|gb|AAH93258.1| LIM homeobox 9 [Danio rerio]
Length = 330
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 70/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 71 CAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF 128
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA+++VYHL CF C CN GD F + DN + C +
Sbjct: 129 -SVQRCARCHLGISASEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRVHF 187
Query: 173 E 173
E
Sbjct: 188 E 188
>gi|68448499|ref|NP_001020339.1| LIM homeobox transcription factor 1, beta a [Danio rerio]
gi|62461839|gb|AAX83056.1| LIM homeodomain protein [Danio rerio]
gi|190337362|gb|AAI63321.1| LIM homeobox transcription factor 1, beta 2 [Danio rerio]
gi|190339774|gb|AAI63333.1| LIM homeobox transcription factor 1, beta 2 [Danio rerio]
Length = 373
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 73/127 (57%), Gaps = 5/127 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C C + I++RFLL+ D WHE+CL+C C L + Y + + + CK DY +LF
Sbjct: 31 CEGCHRPISDRFLLRMNDSSWHEECLQCSVCQQLLT---MSCYSRDHKLYCKHDYQQLFA 87
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
T C+ C + I E+VMRA +VYHL CF C C R C GD F L + ++LC+ DYE
Sbjct: 88 TK--CSGCLEKISPTELVMRALESVYHLSCFCCCVCERRLCKGDEFVLKEGQLLCKTDYE 145
Query: 174 ERQVFAN 180
+ A+
Sbjct: 146 REKDLAS 152
>gi|48375213|gb|AAT42259.1| LIM homeodomain protein Lmx1b.2 [Danio rerio]
Length = 375
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 73/127 (57%), Gaps = 5/127 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C C + I++RFLL+ D WHE+CL+C C L + Y + + + CK DY +LF
Sbjct: 33 CEGCHRPISDRFLLRMNDSSWHEECLQCSVCQQLLT---MSCYSRDHKLYCKHDYQQLFA 89
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
T C+ C + I E+VMRA +VYHL CF C C R C GD F L + ++LC+ DYE
Sbjct: 90 TK--CSGCLEKISPTELVMRALESVYHLSCFCCCVCERRLCKGDEFVLKEGQLLCKTDYE 147
Query: 174 ERQVFAN 180
+ A+
Sbjct: 148 REKDLAS 154
>gi|122053881|gb|ABM65925.1| LMO1 [Ateles geoffroyi]
gi|124013575|gb|ABM88039.1| LMO1 [Macaca nemestrina]
gi|124054184|gb|ABM89286.1| LMO1 [Pongo pygmaeus]
Length = 70
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/67 (70%), Positives = 54/67 (80%)
Query: 43 LAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLI 102
L+ G K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLI
Sbjct: 4 LSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLI 63
Query: 103 LCKRDYL 109
LC+RDYL
Sbjct: 64 LCRRDYL 70
>gi|311213854|ref|NP_001185656.1| LIM homeobox 9 [Taeniopygia guttata]
Length = 378
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 52 CAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF 109
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA+ +VYHL CF C CN GD F + DN + C +
Sbjct: 110 -SVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRAHF 168
Query: 173 E 173
E
Sbjct: 169 E 169
>gi|395531047|ref|XP_003767594.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 3 [Sarcophilus
harrisii]
Length = 380
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 52 CAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF 109
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA+ +VYHL CF C CN GD F + DN + C +
Sbjct: 110 -SVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRAHF 168
Query: 173 E 173
E
Sbjct: 169 E 169
>gi|301618805|ref|XP_002938795.1| PREDICTED: LIM/homeobox protein Lhx2-like [Xenopus (Silurana)
tropicalis]
Length = 419
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 74 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 131
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA++ VYHL CF C CN GD F + DN + C +
Sbjct: 132 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCNTCNKMLTTGDHFGMKDNLVYCRLHF 190
Query: 173 E 173
E
Sbjct: 191 E 191
>gi|126306413|ref|XP_001367734.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Monodelphis
domestica]
gi|395531043|ref|XP_003767592.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Sarcophilus
harrisii]
Length = 388
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 62 CAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF 119
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA+ +VYHL CF C CN GD F + DN + C +
Sbjct: 120 -SVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRAHF 178
Query: 173 E 173
E
Sbjct: 179 E 179
>gi|444730606|gb|ELW70984.1| LIM homeobox transcription factor 1-alpha [Tupaia chinensis]
Length = 265
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 90/170 (52%), Gaps = 9/170 (5%)
Query: 18 FDSLRLATHYQVDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHED 77
D L++ ++Q + T AS +L G A C C + I++RFLL+ D FWHE
Sbjct: 2 LDGLKMEENFQSAIETSASF---SSLLGRAVSPKSVCEGCQRVISDRFLLRLNDSFWHEQ 58
Query: 78 CLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNN 137
C++C C + +T + + + CK DY +LF C C + I E VMRA+ +
Sbjct: 59 CVQCASCK---EPLETTCFYRDKKLYCKFDYEKLFAVK--CGGCFEAIAPNEFVMRAQKS 113
Query: 138 VYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFANIAYNPS 186
VYHL CF C C + GD F L + ++LC+ DYE ER++ + ++ S
Sbjct: 114 VYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSLVSPAAS 163
>gi|195164566|ref|XP_002023117.1| GL21131 [Drosophila persimilis]
gi|194105202|gb|EDW27245.1| GL21131 [Drosophila persimilis]
Length = 490
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 74/125 (59%), Gaps = 6/125 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +C C + I +RF+LK L+ WH CL+C C G++ + + + CK D+ +
Sbjct: 95 IPKCGGCHELILDRFILKVLERTWHAKCLQCSECH---GQLNDKCFARNGQLFCKEDFFK 151
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
+GT C+AC IP ++V RA+++VYHL+CF C C+ GD FYL D K++C+
Sbjct: 152 RYGTK--CSACDMGIPPTQVVRRAQDHVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICK 209
Query: 170 YDYEE 174
DYEE
Sbjct: 210 RDYEE 214
>gi|449268141|gb|EMC79011.1| LIM/homeobox protein Lhx9 [Columba livia]
Length = 378
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 52 CAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF 109
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA+ +VYHL CF C CN GD F + DN + C +
Sbjct: 110 -SVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRAHF 168
Query: 173 E 173
E
Sbjct: 169 E 169
>gi|45382197|ref|NP_990757.1| LIM/homeobox protein Lhx9 [Gallus gallus]
gi|556038|gb|AAA50258.1| homeobox protein [Gallus gallus]
Length = 378
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 52 CAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF 109
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA+ +VYHL CF C CN GD F + DN + C +
Sbjct: 110 -SVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRAHF 168
Query: 173 E 173
E
Sbjct: 169 E 169
>gi|291290877|ref|NP_001167469.1| LIM homeobox 2 [Xenopus laevis]
gi|37720481|gb|AAN41461.1| LIM homeobox protein 2 [Xenopus laevis]
Length = 419
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 74 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 131
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA++ VYHL CF C CN GD F + DN + C +
Sbjct: 132 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCNTCNKMLTTGDHFGMKDNLVYCRLHF 190
Query: 173 E 173
E
Sbjct: 191 E 191
>gi|126306417|ref|XP_001367814.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 3 [Monodelphis
domestica]
Length = 380
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 52 CAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF 109
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA+ +VYHL CF C CN GD F + DN + C +
Sbjct: 110 -SVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRAHF 168
Query: 173 E 173
E
Sbjct: 169 E 169
>gi|224073927|ref|XP_002191376.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Taeniopygia
guttata]
Length = 436
Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 90 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 147
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA++ VYHL CF C CN GD F + DN + C +
Sbjct: 148 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDNLVYCRLHF 206
Query: 173 E 173
E
Sbjct: 207 E 207
>gi|224493175|sp|Q90881.2|LHX9_CHICK RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
9
Length = 397
Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 71 CAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF 128
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA+ +VYHL CF C CN GD F + DN + C +
Sbjct: 129 -SVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRAHF 187
Query: 173 E 173
E
Sbjct: 188 E 188
>gi|301756737|ref|XP_002914217.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like
[Ailuropoda melanoleuca]
Length = 382
Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 89/166 (53%), Gaps = 9/166 (5%)
Query: 18 FDSLRLATHYQVDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHED 77
D L++ ++Q + T AS +L G A C C + I++RFLL+ D FWHE
Sbjct: 2 LDGLKMEENFQSAIETSASF---SSLLGRAVSPKSVCEGCQRVISDRFLLRLNDSFWHEQ 58
Query: 78 CLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNN 137
C++C C L +T + + + CK DY +LF C C + + E VMRA+ +
Sbjct: 59 CVQCASCKEPLE---TTCFYRDKKLYCKYDYEKLFAVK--CGGCFEAVAPNEFVMRAQKS 113
Query: 138 VYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFANIA 182
VYHL CF C C + GD F L + ++LC+ DYE ER++ + ++
Sbjct: 114 VYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSLVS 159
>gi|45382441|ref|NP_990220.1| LIM/homeobox protein Lhx2 [Gallus gallus]
gi|2340819|dbj|BAA21846.1| LIM homeodomain [Gallus gallus]
Length = 400
Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 54 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 111
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA++ VYHL CF C CN GD F + DN + C +
Sbjct: 112 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDNLVYCRLHF 170
Query: 173 E 173
E
Sbjct: 171 E 171
>gi|449478340|ref|XP_004175607.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Taeniopygia
guttata]
Length = 399
Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 110
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA++ VYHL CF C CN GD F + DN + C +
Sbjct: 111 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDNLVYCRLHF 169
Query: 173 E 173
E
Sbjct: 170 E 170
>gi|326924940|ref|XP_003208680.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 1 [Meleagris
gallopavo]
Length = 338
Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 12 CAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF 69
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA+ +VYHL CF C CN GD F + DN + C +
Sbjct: 70 -SVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRAHF 128
Query: 173 E 173
E
Sbjct: 129 E 129
>gi|198473411|ref|XP_001356286.2| GA10505 [Drosophila pseudoobscura pseudoobscura]
gi|198139444|gb|EAL33349.2| GA10505 [Drosophila pseudoobscura pseudoobscura]
Length = 491
Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 74/125 (59%), Gaps = 6/125 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +C C + I +RF+LK L+ WH CL+C C G++ + + + CK D+ +
Sbjct: 96 IPKCGGCHELILDRFILKVLERTWHAKCLQCSECH---GQLNDKCFARNGQLFCKEDFFK 152
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
+GT C+AC IP ++V RA+++VYHL+CF C C+ GD FYL D K++C+
Sbjct: 153 RYGTK--CSACDMGIPPTQVVRRAQDHVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICK 210
Query: 170 YDYEE 174
DYEE
Sbjct: 211 RDYEE 215
>gi|225543484|ref|NP_001139388.1| apterous [Tribolium castaneum]
gi|224459214|gb|ACN43342.1| apterous b [Tribolium castaneum]
Length = 361
Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 73/133 (54%), Gaps = 4/133 (3%)
Query: 42 ALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKAN 100
+L G ++ CA CG RI +R+ L A+D WH CLKC C+C+L + T + +
Sbjct: 18 SLGGSSTLDGTTCAGCGGRIQDRYYLLAVDRQWHASCLKC--CECKLPLDTELTCFARDG 75
Query: 101 LILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFY 160
I CK DY R+F T C C I A E+VMRA+++VYHL CF+C C GD F
Sbjct: 76 NIYCKEDYYRMFAVT-RCGRCQAGISANELVMRARDSVYHLHCFSCTSCGMPLSKGDHFG 134
Query: 161 LCDNKILCEYDYE 173
+ D I C YE
Sbjct: 135 MRDGLIYCRPHYE 147
>gi|348525932|ref|XP_003450475.1| PREDICTED: LIM/homeobox protein Lhx1-like [Oreochromis niloticus]
Length = 399
Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 70/122 (57%), Gaps = 6/122 (4%)
Query: 53 ECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLF 112
+CASC K I +RFLLK LD WH C++C C C L E + + + CK D+ R F
Sbjct: 3 QCASCEKPILDRFLLKVLDRPWHIKCVQCCDCKCSLTE---KCFSREGKLYCKNDFFRKF 59
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDN-KILCEYD 171
GT CA C + I ++V RAK+ V+HL CF C CN + G+ Y+ D K +C+ D
Sbjct: 60 GTK--CAGCAQGILPSDLVRRAKSKVFHLNCFTCVMCNKQLSTGEELYILDEFKFVCKED 117
Query: 172 YE 173
YE
Sbjct: 118 YE 119
>gi|195164562|ref|XP_002023115.1| GL21181 [Drosophila persimilis]
gi|194105200|gb|EDW27243.1| GL21181 [Drosophila persimilis]
Length = 436
Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 74/125 (59%), Gaps = 6/125 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +C C + I +RF+LK L+ WH CL+C C G++ + + + CK D+ +
Sbjct: 45 IPKCGGCHELILDRFILKVLERTWHAKCLQCSECH---GQLNDKCFARNGQLFCKEDFFK 101
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
+GT C+AC IP ++V RA+++VYHL+CF C C+ GD FYL D K++C+
Sbjct: 102 RYGTK--CSACDMGIPPTQVVRRAQDHVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICK 159
Query: 170 YDYEE 174
DYEE
Sbjct: 160 RDYEE 164
>gi|390335971|ref|XP_780701.3| PREDICTED: LIM/homeobox protein Lhx3-like [Strongylocentrotus
purpuratus]
Length = 545
Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 71/121 (58%), Gaps = 6/121 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C I +RF+LK +D WH CL+C C+ +L + + + + CK D+ + FG
Sbjct: 147 CAGCDHPILDRFILKVVDRAWHAKCLRCVDCNAQLTD---RCFSRDGGVFCKEDFFKRFG 203
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYL-CDNKILCEYDY 172
T C++C K I E+V RA +NVYHL CF C C + GD F+L DNK++C+ DY
Sbjct: 204 TK--CSSCEKGIAPTEIVRRALDNVYHLHCFCCIICTRQLSTGDEFFLMTDNKLVCKQDY 261
Query: 173 E 173
E
Sbjct: 262 E 262
>gi|357622660|gb|EHJ74086.1| apterous a [Danaus plexippus]
Length = 397
Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 75/127 (59%), Gaps = 4/127 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG RIT+R+ L AL+ WH CL+C C+C++ + Y + + I CK DY RL+
Sbjct: 63 CAGCGARITDRYYLLALERRWHTPCLRC--CECKMPLDSEQRCYARDSNIFCKNDYFRLY 120
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
G+ C+ C I A E+VMRA++ V+H+ CF+C C+ R GD F + D+ + C Y
Sbjct: 121 GSK-RCSRCNTTISASELVMRARDLVFHVHCFSCALCSARLTKGDTFGIRDSAVYCRLHY 179
Query: 173 EERQVFA 179
E +A
Sbjct: 180 ETMPDYA 186
>gi|229619792|dbj|BAH58094.1| LIM homeobox protein 3 [Hemicentrotus pulcherrimus]
Length = 485
Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 71/121 (58%), Gaps = 6/121 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C I +RF+LK +D WH CL+C C+ +L + + + + CK D+ + FG
Sbjct: 87 CAGCDHPILDRFILKVVDRAWHAKCLRCVDCNAQLTD---RCFSRDGGVFCKEDFFKRFG 143
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYL-CDNKILCEYDY 172
T C++C K I E+V RA +NVYHL CF C C + GD F+L DNK++C+ DY
Sbjct: 144 TK--CSSCEKGIAPTEIVRRALDNVYHLHCFCCIICTRQLSTGDEFFLMTDNKLVCKQDY 201
Query: 173 E 173
E
Sbjct: 202 E 202
>gi|47215186|emb|CAG01452.1| unnamed protein product [Tetraodon nigroviridis]
Length = 272
Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 71/131 (54%), Gaps = 3/131 (2%)
Query: 43 LAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLI 102
+A G CASC + I +++LLK DL WH CL C C L ++ Y K +
Sbjct: 1 MASAPLLGRAVCASCSEEIVDKYLLKVNDLCWHVRCLSCSVCHTSLSS-HTSCYIKEKEV 59
Query: 103 LCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC 162
CK DY R +GT +CA C + I + + V RAK NVYHL CFAC C + G+ F L
Sbjct: 60 FCKLDYFRRYGT--WCACCGRNIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALV 117
Query: 163 DNKILCEYDYE 173
+ K+LC Y+
Sbjct: 118 EEKVLCRVHYD 128
>gi|6180221|emb|CAB59908.1| putative LIM homeodomain protein [Mus musculus]
Length = 366
Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 77/145 (53%), Gaps = 12/145 (8%)
Query: 38 VTQGALAGGASGGLKE--------CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG 89
+T+G G G+ CA CG +I++R+ L A+D WH CLKC C+C+L
Sbjct: 16 LTKGTQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLA 73
Query: 90 -EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 148
E T + K I CK DY R F + CA C I A EMVMRA+++VYHL CF C
Sbjct: 74 LESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCST 132
Query: 149 CNHRFCVGDRFYLCDNKILCEYDYE 173
CN GD F + D+ + C +E
Sbjct: 133 CNKTLTTGDHFGMKDSLVYCRAHFE 157
>gi|224493113|sp|A2I8Z7.1|LHX9_ASTFA RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
9
gi|121531644|gb|ABM55505.1| LIM/homeobox protein 9 [Astyanax mexicanus]
Length = 377
Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 70/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 52 CAGCGSKISDRYYLLAVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF 109
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA+++VYHL CF C CN GD F + +N + C +
Sbjct: 110 -SVQRCARCHLGISASEMVMRARDSVYHLSCFTCTSCNKTLTTGDHFGMRENLVYCRAHF 168
Query: 173 E 173
E
Sbjct: 169 E 169
>gi|126306415|ref|XP_001367775.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Monodelphis
domestica]
gi|395531045|ref|XP_003767593.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Sarcophilus
harrisii]
Length = 321
Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 62 CAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF 119
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA+ +VYHL CF C CN GD F + DN + C +
Sbjct: 120 -SVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRAHF 178
Query: 173 E 173
E
Sbjct: 179 E 179
>gi|224058535|ref|XP_002189228.1| PREDICTED: LIM/homeobox protein Lhx8 [Taeniopygia guttata]
Length = 347
Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 72/132 (54%), Gaps = 3/132 (2%)
Query: 42 ALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANL 101
A G + G C+SCG I +++LLK DL WH CL C C LG ++ Y K
Sbjct: 54 ASGSGCAPGKCVCSSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKD 112
Query: 102 ILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYL 161
I CK DY R +GT C+ C + I + + V RAK NVYHL CFAC C + G+ F L
Sbjct: 113 IFCKLDYFRRYGTR--CSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFAL 170
Query: 162 CDNKILCEYDYE 173
+ K+LC Y+
Sbjct: 171 VEEKVLCRVHYD 182
>gi|432854590|ref|XP_004067976.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Oryzias latipes]
Length = 378
Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 77/146 (52%), Gaps = 13/146 (8%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 52 CAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF 109
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY-- 170
+ CA C I A EMVMRA+++VYHL CF C CN GD F + D+ + C
Sbjct: 110 -SVQRCARCHLGISASEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFGMKDSLVYCRLHF 168
Query: 171 -------DYEERQVFANIAYNPSSLA 189
DY + FA +A LA
Sbjct: 169 ETLVQGPDYHPQLNFAELAAKGGGLA 194
>gi|344276910|ref|XP_003410248.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Loxodonta africana]
Length = 380
Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 77/145 (53%), Gaps = 12/145 (8%)
Query: 38 VTQGALAGGASGGLKE--------CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG 89
+ +GA G G+ CA CG +I++R+ L A+D WH CLKC C+C+L
Sbjct: 28 LAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLA 85
Query: 90 -EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 148
E T + K I CK DY R F + CA C I A EMVMRA+++VYHL CF C
Sbjct: 86 LESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCST 144
Query: 149 CNHRFCVGDRFYLCDNKILCEYDYE 173
CN GD F + D+ + C +E
Sbjct: 145 CNKTLTTGDHFGMKDSLVYCRAHFE 169
>gi|110611159|ref|NP_001036042.1| LIM/homeobox protein Lhx9 isoform c [Mus musculus]
gi|224471884|sp|Q9WUH2.3|LHX9_MOUSE RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
9
Length = 397
Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 77/145 (53%), Gaps = 12/145 (8%)
Query: 38 VTQGALAGGASGGLKE--------CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG 89
+T+G G G+ CA CG +I++R+ L A+D WH CLKC C+C+L
Sbjct: 47 LTKGTQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLA 104
Query: 90 -EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 148
E T + K I CK DY R F + CA C I A EMVMRA+++VYHL CF C
Sbjct: 105 LESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCST 163
Query: 149 CNHRFCVGDRFYLCDNKILCEYDYE 173
CN GD F + D+ + C +E
Sbjct: 164 CNKTLTTGDHFGMKDSLVYCRAHFE 188
>gi|443694945|gb|ELT95963.1| hypothetical protein CAPTEDRAFT_167213 [Capitella teleta]
Length = 352
Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 74/132 (56%), Gaps = 5/132 (3%)
Query: 42 ALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANL 101
++ GG C CG I +R+LL+ + WHE CL+C C L + + K
Sbjct: 3 PISESGQGGKSLCCGCGLTIEDRYLLRVMGNSWHERCLQCDFCRAPLTR---SCFVKNGR 59
Query: 102 ILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYL 161
+LCK DY RL+ C+AC + +P+ E+VMRA +V+HL+CF C C H+ GD+F +
Sbjct: 60 LLCKLDYDRLYA--ARCSACVQTVPSNELVMRAVGHVFHLQCFVCVACGHQLQRGDQFVV 117
Query: 162 CDNKILCEYDYE 173
D ++ C D+E
Sbjct: 118 KDGQLFCRADFE 129
>gi|444717046|gb|ELW57882.1| LIM/homeobox protein Lhx9 [Tupaia chinensis]
Length = 378
Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 77/145 (53%), Gaps = 12/145 (8%)
Query: 38 VTQGALAGGASGGLKE--------CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG 89
+ +GA G G+ CA CG +I++R+ L A+D WH CLKC C+C+L
Sbjct: 28 LAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLA 85
Query: 90 -EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 148
E T + K I CK DY R F + CA C I A EMVMRA+++VYHL CF C
Sbjct: 86 LESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCST 144
Query: 149 CNHRFCVGDRFYLCDNKILCEYDYE 173
CN GD F + D+ + C +E
Sbjct: 145 CNKTLTTGDHFGMKDSLVYCRAHFE 169
>gi|410986204|ref|XP_003999402.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Felis catus]
Length = 380
Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 77/145 (53%), Gaps = 12/145 (8%)
Query: 38 VTQGALAGGASGGLKE--------CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG 89
+ +GA G G+ CA CG +I++R+ L A+D WH CLKC C+C+L
Sbjct: 28 LAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLA 85
Query: 90 -EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 148
E T + K I CK DY R F + CA C I A EMVMRA+++VYHL CF C
Sbjct: 86 LESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCST 144
Query: 149 CNHRFCVGDRFYLCDNKILCEYDYE 173
CN GD F + D+ + C +E
Sbjct: 145 CNKTLTTGDHFGMKDSLVYCRAHFE 169
>gi|348578262|ref|XP_003474902.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 2 [Cavia
porcellus]
Length = 388
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 77/145 (53%), Gaps = 12/145 (8%)
Query: 38 VTQGALAGGASGGLKE--------CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG 89
+ +GA G G+ CA CG +I++R+ L A+D WH CLKC C+C+L
Sbjct: 38 LAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLA 95
Query: 90 -EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 148
E T + K I CK DY R F + CA C I A EMVMRA+++VYHL CF C
Sbjct: 96 LESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCST 154
Query: 149 CNHRFCVGDRFYLCDNKILCEYDYE 173
CN GD F + D+ + C +E
Sbjct: 155 CNKTLTTGDHFGMKDSLVYCRAHFE 179
>gi|395825137|ref|XP_003785798.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Otolemur
garnettii]
Length = 382
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 88/166 (53%), Gaps = 9/166 (5%)
Query: 18 FDSLRLATHYQVDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHED 77
D L++ ++Q + T AS +L G A C C + I +RFLL+ D FWHE
Sbjct: 2 LDGLKMEENFQSAIETSASF---SSLLGRAVSPKSVCEGCQRVILDRFLLRLNDSFWHEQ 58
Query: 78 CLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNN 137
C++C C L +T + + + CK DY +LF C C + I E VMRA+ +
Sbjct: 59 CVQCASCKEPLE---TTCFYRDKKLYCKYDYEKLFAVK--CGGCFEAIAPNEFVMRAQKS 113
Query: 138 VYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFANIA 182
VYHL CF C C + GD F L + ++LC+ DYE ER++ + ++
Sbjct: 114 VYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSLVS 159
>gi|431921900|gb|ELK19103.1| LIM/homeobox protein Lhx9 [Pteropus alecto]
Length = 479
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 70/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 153 CAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF 210
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA+++VYHL CF C CN GD F + D+ + C +
Sbjct: 211 -SVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHF 269
Query: 173 E 173
E
Sbjct: 270 E 270
>gi|349603649|gb|AEP99432.1| Rhombotin-2-like protein, partial [Equus caballus]
Length = 92
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 48/84 (57%), Positives = 56/84 (66%)
Query: 91 VGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCN 150
VG LY K LC+RDYLRLFG G CA+C K I A+EM MR K+ VYHLECF C C
Sbjct: 1 VGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQ 60
Query: 151 HRFCVGDRFYLCDNKILCEYDYEE 174
FCVGDR+ L ++ I+CE D E
Sbjct: 61 KHFCVGDRYLLINSDIVCEQDIYE 84
>gi|410921836|ref|XP_003974389.1| PREDICTED: LIM/homeobox protein Lhx9-like [Takifugu rubripes]
Length = 506
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 70/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 180 CAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF 237
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA+++VYHL CF C CN GD F + D+ + C +
Sbjct: 238 -SVQRCARCHLGISASEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFGMKDSLVYCRLHF 296
Query: 173 E 173
E
Sbjct: 297 E 297
>gi|348513701|ref|XP_003444380.1| PREDICTED: LIM/homeobox protein Lhx6-like [Oreochromis niloticus]
Length = 375
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 68/124 (54%), Gaps = 3/124 (2%)
Query: 50 GLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYL 109
G CASCG I +R+LLK +L WH CL+C C L + S+ Y K I CK DY
Sbjct: 93 GKNLCASCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQ-HSSCYIKNKEIFCKMDYF 151
Query: 110 RLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCE 169
FGT CA C + I A + V RA+ N YHL CFAC C + G+ F L + K+LC
Sbjct: 152 SRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACYSCKRQLSTGEEFGLVEEKVLCR 209
Query: 170 YDYE 173
Y+
Sbjct: 210 IHYD 213
>gi|119611694|gb|EAW91288.1| LIM homeobox 9, isoform CRA_b [Homo sapiens]
Length = 378
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 77/145 (53%), Gaps = 12/145 (8%)
Query: 38 VTQGALAGGASGGLKE--------CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG 89
+ +GA G G+ CA CG +I++R+ L A+D WH CLKC C+C+L
Sbjct: 28 LAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLA 85
Query: 90 -EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 148
E T + K I CK DY R F + CA C I A EMVMRA+++VYHL CF C
Sbjct: 86 LESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCST 144
Query: 149 CNHRFCVGDRFYLCDNKILCEYDYE 173
CN GD F + D+ + C +E
Sbjct: 145 CNKTLTTGDHFGMKDSLVYCRAHFE 169
>gi|301767830|ref|XP_002919335.1| PREDICTED: LIM/homeobox protein Lhx9-like [Ailuropoda melanoleuca]
Length = 447
Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 77/145 (53%), Gaps = 12/145 (8%)
Query: 38 VTQGALAGGASGGLKE--------CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG 89
+ +GA G G+ CA CG +I++R+ L A+D WH CLKC C+C+L
Sbjct: 38 LAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLA 95
Query: 90 -EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 148
E T + K I CK DY R F + CA C I A EMVMRA+++VYHL CF C
Sbjct: 96 LESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCST 154
Query: 149 CNHRFCVGDRFYLCDNKILCEYDYE 173
CN GD F + D+ + C +E
Sbjct: 155 CNKTLTTGDHFGMKDSLVYCRAHFE 179
>gi|444724034|gb|ELW64656.1| LIM/homeobox protein Lhx6 [Tupaia chinensis]
Length = 336
Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 26 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 85
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 86 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 142
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 143 QLSTGEEFGLVEEKVLCRIHYD 164
>gi|345803062|ref|XP_857156.2| PREDICTED: LIM/homeobox protein Lhx9 isoform 4 [Canis lupus
familiaris]
Length = 380
Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 77/145 (53%), Gaps = 12/145 (8%)
Query: 38 VTQGALAGGASGGLKE--------CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG 89
+ +GA G G+ CA CG +I++R+ L A+D WH CLKC C+C+L
Sbjct: 28 LAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLA 85
Query: 90 -EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 148
E T + K I CK DY R F + CA C I A EMVMRA+++VYHL CF C
Sbjct: 86 LESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCST 144
Query: 149 CNHRFCVGDRFYLCDNKILCEYDYE 173
CN GD F + D+ + C +E
Sbjct: 145 CNKTLTTGDHFGMKDSLVYCRAHFE 169
>gi|291402696|ref|XP_002717724.1| PREDICTED: LIM homeobox protein 9-like isoform 2 [Oryctolagus
cuniculus]
Length = 388
Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 77/145 (53%), Gaps = 12/145 (8%)
Query: 38 VTQGALAGGASGGLKE--------CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG 89
+ +GA G G+ CA CG +I++R+ L A+D WH CLKC C+C+L
Sbjct: 38 LAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLA 95
Query: 90 -EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 148
E T + K I CK DY R F + CA C I A EMVMRA+++VYHL CF C
Sbjct: 96 LESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCST 154
Query: 149 CNHRFCVGDRFYLCDNKILCEYDYE 173
CN GD F + D+ + C +E
Sbjct: 155 CNKTLTTGDHFGMKDSLVYCRAHFE 179
>gi|260794979|ref|XP_002592484.1| LIM class homeodomain transcription factor, apterous subclass
[Branchiostoma floridae]
gi|229277704|gb|EEN48495.1| LIM class homeodomain transcription factor, apterous subclass
[Branchiostoma floridae]
Length = 330
Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 67/124 (54%), Gaps = 2/124 (1%)
Query: 50 GLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYL 109
G C CG++I +RF L A+D WH CLKC CD RL + T + K I C+ DY
Sbjct: 11 GSIACGGCGEKIQDRFFLHAVDRQWHSACLKCCECDVRL-DCELTCFSKDGRIYCREDYY 69
Query: 110 RLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCE 169
R F C C I A EMVMRA+++VYHL CF C C+ GD F + + I C
Sbjct: 70 RRFAVQ-RCGRCHLGITAREMVMRARDSVYHLACFTCVTCDKALTTGDEFGMQGSAIYCR 128
Query: 170 YDYE 173
Y YE
Sbjct: 129 YHYE 132
>gi|403307412|ref|XP_003944189.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Saimiri boliviensis
boliviensis]
Length = 399
Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 77/145 (53%), Gaps = 12/145 (8%)
Query: 38 VTQGALAGGASGGLKE--------CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG 89
+ +GA G G+ CA CG +I++R+ L A+D WH CLKC C+C+L
Sbjct: 47 LAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLA 104
Query: 90 -EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 148
E T + K I CK DY R F + CA C I A EMVMRA+++VYHL CF C
Sbjct: 105 LESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCST 163
Query: 149 CNHRFCVGDRFYLCDNKILCEYDYE 173
CN GD F + D+ + C +E
Sbjct: 164 CNKTLTTGDHFGMKDSLVYCRAHFE 188
>gi|296230329|ref|XP_002760660.1| PREDICTED: LIM/homeobox protein Lhx9 [Callithrix jacchus]
Length = 388
Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 77/145 (53%), Gaps = 12/145 (8%)
Query: 38 VTQGALAGGASGGLKE--------CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG 89
+ +GA G G+ CA CG +I++R+ L A+D WH CLKC C+C+L
Sbjct: 38 LAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLA 95
Query: 90 -EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 148
E T + K I CK DY R F + CA C I A EMVMRA+++VYHL CF C
Sbjct: 96 LESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCST 154
Query: 149 CNHRFCVGDRFYLCDNKILCEYDYE 173
CN GD F + D+ + C +E
Sbjct: 155 CNKTLTTGDHFGMKDSLVYCRAHFE 179
>gi|149755774|ref|XP_001493379.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Equus
caballus]
Length = 382
Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 88/166 (53%), Gaps = 9/166 (5%)
Query: 18 FDSLRLATHYQVDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHED 77
D L++ +Q + T AS +L G A C C + I++RFLL+ D FWHE
Sbjct: 2 LDGLKMEESFQGAIETSASF---SSLLGRAVSPKSVCEGCQRVISDRFLLRLNDSFWHEQ 58
Query: 78 CLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNN 137
C++C C L +T + + + CK DY +LF C C + I E VMRA+ +
Sbjct: 59 CVQCASCKEPLE---TTCFYRDKKLYCKYDYEKLFAVK--CGGCFEAIAPNEFVMRAQKS 113
Query: 138 VYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFANIA 182
VYHL CF C C + GD F L + ++LC+ DYE ER++ + ++
Sbjct: 114 VYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSLVS 159
>gi|114571656|ref|XP_001139158.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Pan troglodytes]
Length = 399
Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 77/145 (53%), Gaps = 12/145 (8%)
Query: 38 VTQGALAGGASGGLKE--------CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG 89
+ +GA G G+ CA CG +I++R+ L A+D WH CLKC C+C+L
Sbjct: 47 LAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLA 104
Query: 90 -EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 148
E T + K I CK DY R F + CA C I A EMVMRA+++VYHL CF C
Sbjct: 105 LESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCST 163
Query: 149 CNHRFCVGDRFYLCDNKILCEYDYE 173
CN GD F + D+ + C +E
Sbjct: 164 CNKTLTTGDHFGMKDSLVYCRAHFE 188
>gi|432854592|ref|XP_004067977.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Oryzias latipes]
Length = 380
Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 77/146 (52%), Gaps = 13/146 (8%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 52 CAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF 109
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY-- 170
+ CA C I A EMVMRA+++VYHL CF C CN GD F + D+ + C
Sbjct: 110 -SVQRCARCHLGISASEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFGMKDSLVYCRLHF 168
Query: 171 -------DYEERQVFANIAYNPSSLA 189
DY + FA +A LA
Sbjct: 169 ETLVQGPDYHPQLNFAELAAKGGGLA 194
>gi|62241033|ref|NP_001014434.1| LIM/homeobox protein Lhx9 isoform 2 [Homo sapiens]
gi|114571650|ref|XP_525011.2| PREDICTED: LIM/homeobox protein Lhx9 isoform 6 [Pan troglodytes]
gi|297281170|ref|XP_001110674.2| PREDICTED: LIM/homeobox protein Lhx9 isoform 3 [Macaca mulatta]
gi|395729258|ref|XP_002809704.2| PREDICTED: LIM/homeobox protein Lhx9 [Pongo abelii]
gi|397505118|ref|XP_003823120.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Pan paniscus]
gi|402857736|ref|XP_003893401.1| PREDICTED: LIM/homeobox protein Lhx9 [Papio anubis]
gi|426333155|ref|XP_004028150.1| PREDICTED: LIM/homeobox protein Lhx9 [Gorilla gorilla gorilla]
gi|9367761|emb|CAB97493.1| LIM-homeobox 9 [Homo sapiens]
gi|119611697|gb|EAW91291.1| LIM homeobox 9, isoform CRA_e [Homo sapiens]
Length = 388
Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 77/145 (53%), Gaps = 12/145 (8%)
Query: 38 VTQGALAGGASGGLKE--------CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG 89
+ +GA G G+ CA CG +I++R+ L A+D WH CLKC C+C+L
Sbjct: 38 LAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLA 95
Query: 90 -EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 148
E T + K I CK DY R F + CA C I A EMVMRA+++VYHL CF C
Sbjct: 96 LESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCST 154
Query: 149 CNHRFCVGDRFYLCDNKILCEYDYE 173
CN GD F + D+ + C +E
Sbjct: 155 CNKTLTTGDHFGMKDSLVYCRAHFE 179
>gi|344276912|ref|XP_003410249.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Loxodonta africana]
Length = 388
Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 77/145 (53%), Gaps = 12/145 (8%)
Query: 38 VTQGALAGGASGGLKE--------CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG 89
+ +GA G G+ CA CG +I++R+ L A+D WH CLKC C+C+L
Sbjct: 38 LAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLA 95
Query: 90 -EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 148
E T + K I CK DY R F + CA C I A EMVMRA+++VYHL CF C
Sbjct: 96 LESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCST 154
Query: 149 CNHRFCVGDRFYLCDNKILCEYDYE 173
CN GD F + D+ + C +E
Sbjct: 155 CNKTLTTGDHFGMKDSLVYCRAHFE 179
>gi|410986202|ref|XP_003999401.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Felis catus]
Length = 388
Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 77/145 (53%), Gaps = 12/145 (8%)
Query: 38 VTQGALAGGASGGLKE--------CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG 89
+ +GA G G+ CA CG +I++R+ L A+D WH CLKC C+C+L
Sbjct: 38 LAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLA 95
Query: 90 -EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 148
E T + K I CK DY R F + CA C I A EMVMRA+++VYHL CF C
Sbjct: 96 LESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCST 154
Query: 149 CNHRFCVGDRFYLCDNKILCEYDYE 173
CN GD F + D+ + C +E
Sbjct: 155 CNKTLTTGDHFGMKDSLVYCRAHFE 179
>gi|332220030|ref|XP_003259160.1| PREDICTED: LOW QUALITY PROTEIN: LIM homeobox transcription factor
1-alpha [Nomascus leucogenys]
Length = 368
Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 88/166 (53%), Gaps = 9/166 (5%)
Query: 18 FDSLRLATHYQVDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHED 77
D L++ ++Q + T AS +L G A C C + I +RFLL+ D FWHE
Sbjct: 2 LDGLKMEENFQSAIDTSASF---SSLLGRAVSPKSVCEGCQRVILDRFLLRLNDSFWHEQ 58
Query: 78 CLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNN 137
C++C C L +T + + + CK DY +LF C C + I E VMRA+ +
Sbjct: 59 CVQCASCKEPLE---TTCFYRDKKLYCKYDYEKLFAVK--CGGCFEAIAPNEFVMRAQKS 113
Query: 138 VYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFANIA 182
VYHL CF C C + GD F L + ++LC+ DYE ER++ + ++
Sbjct: 114 VYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSLVS 159
>gi|28893581|ref|NP_796372.1| LIM homeobox transcription factor 1-alpha [Homo sapiens]
gi|291327513|ref|NP_001167540.1| LIM homeobox transcription factor 1-alpha [Homo sapiens]
gi|109019319|ref|XP_001084612.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 2
[Macaca mulatta]
gi|109019321|ref|XP_001084727.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 3
[Macaca mulatta]
gi|114561083|ref|XP_001174539.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 2 [Pan
troglodytes]
gi|114561085|ref|XP_001174542.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 3 [Pan
troglodytes]
gi|296229940|ref|XP_002760489.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Callithrix
jacchus]
gi|397508364|ref|XP_003824628.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 1 [Pan
paniscus]
gi|397508366|ref|XP_003824629.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 2 [Pan
paniscus]
gi|402858034|ref|XP_003893535.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 1
[Papio anubis]
gi|402858036|ref|XP_003893536.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 2
[Papio anubis]
gi|426332555|ref|XP_004027869.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 1
[Gorilla gorilla gorilla]
gi|426332557|ref|XP_004027870.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 2
[Gorilla gorilla gorilla]
gi|27923801|sp|Q8TE12.1|LMX1A_HUMAN RecName: Full=LIM homeobox transcription factor 1-alpha; AltName:
Full=LIM/homeobox protein 1.1; Short=LMX-1.1; AltName:
Full=LIM/homeobox protein LMX1A
gi|19879681|gb|AAL82892.1| LIM homeobox transcription factor 1 alpha [Homo sapiens]
gi|119611150|gb|EAW90744.1| LIM homeobox transcription factor 1, alpha, isoform CRA_b [Homo
sapiens]
gi|182887815|gb|AAI60062.1| LIM homeobox transcription factor 1, alpha [synthetic construct]
gi|193785405|dbj|BAG54558.1| unnamed protein product [Homo sapiens]
gi|208966672|dbj|BAG73350.1| LIM homeobox transcription factor 1, alpha [synthetic construct]
gi|355558990|gb|EHH15770.1| hypothetical protein EGK_01906 [Macaca mulatta]
gi|355746154|gb|EHH50779.1| hypothetical protein EGM_01656 [Macaca fascicularis]
Length = 382
Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 88/166 (53%), Gaps = 9/166 (5%)
Query: 18 FDSLRLATHYQVDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHED 77
D L++ ++Q + T AS +L G A C C + I +RFLL+ D FWHE
Sbjct: 2 LDGLKMEENFQSAIDTSASF---SSLLGRAVSPKSVCEGCQRVILDRFLLRLNDSFWHEQ 58
Query: 78 CLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNN 137
C++C C L +T + + + CK DY +LF C C + I E VMRA+ +
Sbjct: 59 CVQCASCKEPLE---TTCFYRDKKLYCKYDYEKLFAVK--CGGCFEAIAPNEFVMRAQKS 113
Query: 138 VYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFANIA 182
VYHL CF C C + GD F L + ++LC+ DYE ER++ + ++
Sbjct: 114 VYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSLVS 159
>gi|403272543|ref|XP_003928115.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 1
[Saimiri boliviensis boliviensis]
gi|403272545|ref|XP_003928116.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 2
[Saimiri boliviensis boliviensis]
Length = 382
Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 88/166 (53%), Gaps = 9/166 (5%)
Query: 18 FDSLRLATHYQVDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHED 77
D L++ ++Q + T AS +L G A C C + I +RFLL+ D FWHE
Sbjct: 2 LDGLKMEENFQSAIDTSASF---SSLLGRAVSPKSVCEGCQRVILDRFLLRLNDSFWHEQ 58
Query: 78 CLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNN 137
C++C C L +T + + + CK DY +LF C C + I E VMRA+ +
Sbjct: 59 CVQCASCKEPLE---TTCFYRDKKLYCKYDYEKLFAVK--CGGCFEAIAPNEFVMRAQKS 113
Query: 138 VYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFANIA 182
VYHL CF C C + GD F L + ++LC+ DYE ER++ + ++
Sbjct: 114 VYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSLVS 159
>gi|348578260|ref|XP_003474901.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 1 [Cavia
porcellus]
Length = 397
Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 77/145 (53%), Gaps = 12/145 (8%)
Query: 38 VTQGALAGGASGGLKE--------CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG 89
+ +GA G G+ CA CG +I++R+ L A+D WH CLKC C+C+L
Sbjct: 47 LAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLA 104
Query: 90 -EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 148
E T + K I CK DY R F + CA C I A EMVMRA+++VYHL CF C
Sbjct: 105 LESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCST 163
Query: 149 CNHRFCVGDRFYLCDNKILCEYDYE 173
CN GD F + D+ + C +E
Sbjct: 164 CNKTLTTGDHFGMKDSLVYCRAHFE 188
>gi|426362929|ref|XP_004048602.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Gorilla gorilla
gorilla]
Length = 369
Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 70 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 129
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 130 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 186
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 187 QLSTGEEFGLVEEKVLCRIHYD 208
>gi|397505116|ref|XP_003823119.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Pan paniscus]
gi|441624364|ref|XP_004088986.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Nomascus
leucogenys]
Length = 399
Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 77/145 (53%), Gaps = 12/145 (8%)
Query: 38 VTQGALAGGASGGLKE--------CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG 89
+ +GA G G+ CA CG +I++R+ L A+D WH CLKC C+C+L
Sbjct: 47 LAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLA 104
Query: 90 -EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 148
E T + K I CK DY R F + CA C I A EMVMRA+++VYHL CF C
Sbjct: 105 LESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCST 163
Query: 149 CNHRFCVGDRFYLCDNKILCEYDYE 173
CN GD F + D+ + C +E
Sbjct: 164 CNKTLTTGDHFGMKDSLVYCRAHFE 188
>gi|395838925|ref|XP_003792355.1| PREDICTED: LIM/homeobox protein Lhx9 [Otolemur garnettii]
Length = 397
Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 77/145 (53%), Gaps = 12/145 (8%)
Query: 38 VTQGALAGGASGGLKE--------CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG 89
+ +GA G G+ CA CG +I++R+ L A+D WH CLKC C+C+L
Sbjct: 47 LAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLA 104
Query: 90 -EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 148
E T + K I CK DY R F + CA C I A EMVMRA+++VYHL CF C
Sbjct: 105 LESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCST 163
Query: 149 CNHRFCVGDRFYLCDNKILCEYDYE 173
CN GD F + D+ + C +E
Sbjct: 164 CNKTLTTGDHFGMKDSLVYCRAHFE 188
>gi|126272190|ref|XP_001362509.1| PREDICTED: insulin gene enhancer protein ISL-2 [Monodelphis
domestica]
Length = 359
Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 73/124 (58%), Gaps = 4/124 (3%)
Query: 50 GLKECASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDY 108
G+ C CG +I ++++LK + DL WH CLKC C L E T + + CKRDY
Sbjct: 23 GIAMCVGCGSQIHDQYILKVSPDLEWHAACLKCAECSQYLDET-CTCFVRNGKTYCKRDY 81
Query: 109 LRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILC 168
+RLFG CA C + ++VMRA+ NVYH+ECF C C+ + GD F L D+++LC
Sbjct: 82 IRLFGIK--CAKCKVGFSSSDLVMRARENVYHIECFRCSVCSRQLLPGDEFSLRDHELLC 139
Query: 169 EYDY 172
D+
Sbjct: 140 RADH 143
>gi|403307414|ref|XP_003944190.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Saimiri boliviensis
boliviensis]
Length = 388
Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 77/145 (53%), Gaps = 12/145 (8%)
Query: 38 VTQGALAGGASGGLKE--------CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG 89
+ +GA G G+ CA CG +I++R+ L A+D WH CLKC C+C+L
Sbjct: 38 LAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLA 95
Query: 90 -EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 148
E T + K I CK DY R F + CA C I A EMVMRA+++VYHL CF C
Sbjct: 96 LESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCST 154
Query: 149 CNHRFCVGDRFYLCDNKILCEYDYE 173
CN GD F + D+ + C +E
Sbjct: 155 CNKTLTTGDHFGMKDSLVYCRAHFE 179
>gi|193575711|ref|XP_001949543.1| PREDICTED: LIM/homeobox protein Lhx2-like [Acyrthosiphon pisum]
Length = 356
Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 70/120 (58%), Gaps = 2/120 (1%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA CG+ I +RF L A+D+ WH CL+C C L + T Y + I CK+DY RLF
Sbjct: 23 CAGCGRSIDDRFYLSAVDMCWHIGCLQCAECKLPL-DTELTCYSRHGNIYCKQDYYRLF- 80
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
+ CA C I A ++VMRAK+ VYH+ECFAC C C GD + + D + C DYE
Sbjct: 81 SIKRCARCQGGIGACDLVMRAKDLVYHVECFACYACGAVLCKGDYYGVRDGAVFCRPDYE 140
>gi|326924942|ref|XP_003208681.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 2 [Meleagris
gallopavo]
Length = 271
Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 12 CAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF 69
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA+ +VYHL CF C CN GD F + DN + C +
Sbjct: 70 -SVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRAHF 128
Query: 173 E 173
E
Sbjct: 129 E 129
>gi|33569216|ref|NP_064589.2| LIM/homeobox protein Lhx9 isoform 1 [Homo sapiens]
gi|73960328|ref|XP_848787.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Canis lupus
familiaris]
gi|332230752|ref|XP_003264559.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Nomascus
leucogenys]
gi|224471883|sp|Q9NQ69.3|LHX9_HUMAN RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
9
gi|33416232|gb|AAP32471.2| LIM-homeobox 9 protein [Homo sapiens]
gi|119611696|gb|EAW91290.1| LIM homeobox 9, isoform CRA_d [Homo sapiens]
gi|124297089|gb|AAI31623.1| LIM homeobox 9 [Homo sapiens]
gi|355558916|gb|EHH15696.1| hypothetical protein EGK_01820 [Macaca mulatta]
gi|355746065|gb|EHH50690.1| hypothetical protein EGM_01558 [Macaca fascicularis]
Length = 397
Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 77/145 (53%), Gaps = 12/145 (8%)
Query: 38 VTQGALAGGASGGLKE--------CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG 89
+ +GA G G+ CA CG +I++R+ L A+D WH CLKC C+C+L
Sbjct: 47 LAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLA 104
Query: 90 -EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 148
E T + K I CK DY R F + CA C I A EMVMRA+++VYHL CF C
Sbjct: 105 LESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCST 163
Query: 149 CNHRFCVGDRFYLCDNKILCEYDYE 173
CN GD F + D+ + C +E
Sbjct: 164 CNKTLTTGDHFGMKDSLVYCRAHFE 188
>gi|351708127|gb|EHB11046.1| LIM/homeobox protein Lhx9 [Heterocephalus glaber]
Length = 397
Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 77/145 (53%), Gaps = 12/145 (8%)
Query: 38 VTQGALAGGASGGLKE--------CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG 89
+ +GA G G+ CA CG +I++R+ L A+D WH CLKC C+C+L
Sbjct: 47 LAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLA 104
Query: 90 -EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 148
E T + K I CK DY R F + CA C I A EMVMRA+++VYHL CF C
Sbjct: 105 LESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCST 163
Query: 149 CNHRFCVGDRFYLCDNKILCEYDYE 173
CN GD F + D+ + C +E
Sbjct: 164 CNKTLTTGDHFGMKDSLVYCRAHFE 188
>gi|260828933|ref|XP_002609417.1| LIM class homeodomain transcription factor, Lhx6/8 subclass
[Branchiostoma floridae]
gi|229294773|gb|EEN65427.1| LIM class homeodomain transcription factor, Lhx6/8 subclass
[Branchiostoma floridae]
Length = 292
Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 83/169 (49%), Gaps = 3/169 (1%)
Query: 18 FDSLRLATHYQVDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHED 77
F S Y + A+ G ++ A + C CG I ++FLLK + WH
Sbjct: 15 FPSPNWEALYTPCVQATAARRQDGNMSEHAEMDSELCTGCGGPIQDKFLLKVGERQWHVK 74
Query: 78 CLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNN 137
CL+C C LG +T Y + + CK DY+R FGT CA C + I + + V RAK +
Sbjct: 75 CLRCSVCQTPLGR-HTTCYTREADVFCKADYIRQFGTK--CAKCCRNIQSNDWVRRAKTH 131
Query: 138 VYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFANIAYNPS 186
VYHL CFAC C + G+ F L D K+LC+ Y E A + N S
Sbjct: 132 VYHLACFACDACKRQLSTGEEFALHDGKVLCKSHYLEAMDAAAGSGNGS 180
>gi|149743835|ref|XP_001492921.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Equus caballus]
Length = 388
Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 77/145 (53%), Gaps = 12/145 (8%)
Query: 38 VTQGALAGGASGGLKE--------CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG 89
+ +GA G G+ CA CG +I++R+ L A+D WH CLKC C+C+L
Sbjct: 38 LAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLA 95
Query: 90 -EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 148
E T + K I CK DY R F + CA C I A EMVMRA+++VYHL CF C
Sbjct: 96 LESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCST 154
Query: 149 CNHRFCVGDRFYLCDNKILCEYDYE 173
CN GD F + D+ + C +E
Sbjct: 155 CNKTLTTGDHFGMKDSLVYCRAHFE 179
>gi|351694308|gb|EHA97226.1| LIM/homeobox protein Lhx6 [Heterocephalus glaber]
Length = 294
Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 26 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 85
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 86 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 142
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 143 QLSTGEEFGLVEEKVLCRIHYD 164
>gi|281354175|gb|EFB29759.1| hypothetical protein PANDA_007956 [Ailuropoda melanoleuca]
Length = 382
Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 77/145 (53%), Gaps = 12/145 (8%)
Query: 38 VTQGALAGGASGGLKE--------CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG 89
+ +GA G G+ CA CG +I++R+ L A+D WH CLKC C+C+L
Sbjct: 47 LAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLA 104
Query: 90 -EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 148
E T + K I CK DY R F + CA C I A EMVMRA+++VYHL CF C
Sbjct: 105 LESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCST 163
Query: 149 CNHRFCVGDRFYLCDNKILCEYDYE 173
CN GD F + D+ + C +E
Sbjct: 164 CNKTLTTGDHFGMKDSLVYCRAHFE 188
>gi|291402694|ref|XP_002717723.1| PREDICTED: LIM homeobox protein 9-like isoform 1 [Oryctolagus
cuniculus]
Length = 397
Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 77/145 (53%), Gaps = 12/145 (8%)
Query: 38 VTQGALAGGASGGLKE--------CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG 89
+ +GA G G+ CA CG +I++R+ L A+D WH CLKC C+C+L
Sbjct: 47 LAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLA 104
Query: 90 -EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 148
E T + K I CK DY R F + CA C I A EMVMRA+++VYHL CF C
Sbjct: 105 LESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCST 163
Query: 149 CNHRFCVGDRFYLCDNKILCEYDYE 173
CN GD F + D+ + C +E
Sbjct: 164 CNKTLTTGDHFGMKDSLVYCRAHFE 188
>gi|70909340|ref|NP_001020736.1| LIM/homeobox protein Lhx9 isoform a [Mus musculus]
gi|49119043|gb|AAH72623.1| LIM homeobox protein 9 [Mus musculus]
Length = 330
Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 77/145 (53%), Gaps = 12/145 (8%)
Query: 38 VTQGALAGGASGGLKE--------CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG 89
+T+G G G+ CA CG +I++R+ L A+D WH CLKC C+C+L
Sbjct: 47 LTKGTQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLA 104
Query: 90 -EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 148
E T + K I CK DY R F + CA C I A EMVMRA+++VYHL CF C
Sbjct: 105 LESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCST 163
Query: 149 CNHRFCVGDRFYLCDNKILCEYDYE 173
CN GD F + D+ + C +E
Sbjct: 164 CNKTLTTGDHFGMKDSLVYCRAHFE 188
>gi|1708565|sp|P53409.1|ISL3_ONCTS RecName: Full=Insulin gene enhancer protein ISL-3; Short=Islet-3
Length = 363
Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 90/175 (51%), Gaps = 11/175 (6%)
Query: 29 VDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCR 87
VD+ ++S + G C CG +I ++++L+ + DL WH CLKC C
Sbjct: 2 VDIIFNSSFLGDMGDHSKKKSGFAMCVGCGSQIHDQYILRVSPDLEWHAACLKCAECSQY 61
Query: 88 LGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQ 147
L E T + + CKRDY+RLFG CA C + ++VMRA++NVYH+ECF C
Sbjct: 62 LDET-CTCFVRDGKTYCKRDYVRLFGIK--CAKCNLGFSSSDLVMRARDNVYHIECFRCS 118
Query: 148 QCNHRFCVGDRFYLCDNKILCEYDYE---ERQVFANIAYNPSSLAHLRRQVTLQV 199
C+ + GD F L D ++LC D+ ER A +P S H+ +L +
Sbjct: 119 VCSRQLLPGDEFSLRDEELLCRADHSLLMER----TSAGSPISPGHIHSNRSLHL 169
>gi|332229917|ref|XP_003264133.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Nomascus
leucogenys]
Length = 376
Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 77 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 136
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 137 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 193
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 194 QLSTGEEFGLVEEKVLCRIHYD 215
>gi|6754542|ref|NP_034844.1| LIM/homeobox protein Lhx9 isoform b [Mus musculus]
gi|6179608|emb|CAB59907.1| putative LIM-homeodomain alpha isoform [Mus musculus]
gi|148707590|gb|EDL39537.1| LIM homeobox protein 9, isoform CRA_b [Mus musculus]
Length = 321
Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 77/145 (53%), Gaps = 12/145 (8%)
Query: 38 VTQGALAGGASGGLKE--------CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG 89
+T+G G G+ CA CG +I++R+ L A+D WH CLKC C+C+L
Sbjct: 38 LTKGTQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLA 95
Query: 90 -EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 148
E T + K I CK DY R F + CA C I A EMVMRA+++VYHL CF C
Sbjct: 96 LESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCST 154
Query: 149 CNHRFCVGDRFYLCDNKILCEYDYE 173
CN GD F + D+ + C +E
Sbjct: 155 CNKTLTTGDHFGMKDSLVYCRAHFE 179
>gi|332229915|ref|XP_003264132.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Nomascus
leucogenys]
Length = 365
Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 66 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 125
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 126 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 182
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 183 QLSTGEEFGLVEEKVLCRIHYD 204
>gi|426362927|ref|XP_004048601.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Gorilla gorilla
gorilla]
Length = 384
Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 70 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 129
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 130 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 186
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 187 QLSTGEEFGLVEEKVLCRIHYD 208
>gi|6180222|emb|CAB59909.1| putative LIM homeodomain protein [Mus musculus]
Length = 299
Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 77/145 (53%), Gaps = 12/145 (8%)
Query: 38 VTQGALAGGASGGLKE--------CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG 89
+T+G G G+ CA CG +I++R+ L A+D WH CLKC C+C+L
Sbjct: 16 LTKGTQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLA 73
Query: 90 -EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 148
E T + K I CK DY R F + CA C I A EMVMRA+++VYHL CF C
Sbjct: 74 LESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCST 132
Query: 149 CNHRFCVGDRFYLCDNKILCEYDYE 173
CN GD F + D+ + C +E
Sbjct: 133 CNKTLTTGDHFGMKDSLVYCRAHFE 157
>gi|348536381|ref|XP_003455675.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 1 [Oreochromis
niloticus]
Length = 399
Score = 99.4 bits (246), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 70/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 73 CAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF 130
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA+++VYHL CF C CN GD F + D+ + C +
Sbjct: 131 -SVQRCARCHLGISASEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFGMKDSLVYCRLHF 189
Query: 173 E 173
E
Sbjct: 190 E 190
>gi|296482212|tpg|DAA24327.1| TPA: LIM homeobox transcription factor 1, beta-like [Bos taurus]
Length = 1019
Score = 99.4 bits (246), Expect = 9e-19, Method: Composition-based stats.
Identities = 48/134 (35%), Positives = 76/134 (56%), Gaps = 6/134 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C C + I++RFL++ + WHE+CL+C C L ++ Y + + CK+DY +LF
Sbjct: 673 CEGCQRPISDRFLMRVNESSWHEECLQCAACQQALT---TSCYFRDRKLYCKQDYQQLFA 729
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
C+ C + I E VMRA VYHL CF C C + GD F L + ++LC+ DYE
Sbjct: 730 AK--CSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYE 787
Query: 174 -ERQVFANIAYNPS 186
E+ + ++++ + S
Sbjct: 788 KEKDLLSSVSPDES 801
>gi|148707589|gb|EDL39536.1| LIM homeobox protein 9, isoform CRA_a [Mus musculus]
Length = 342
Score = 99.0 bits (245), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 77/145 (53%), Gaps = 12/145 (8%)
Query: 38 VTQGALAGGASGGLKE--------CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG 89
+T+G G G+ CA CG +I++R+ L A+D WH CLKC C+C+L
Sbjct: 38 LTKGTQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLA 95
Query: 90 -EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 148
E T + K I CK DY R F + CA C I A EMVMRA+++VYHL CF C
Sbjct: 96 LESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCST 154
Query: 149 CNHRFCVGDRFYLCDNKILCEYDYE 173
CN GD F + D+ + C +E
Sbjct: 155 CNKTLTTGDHFGMKDSLVYCRAHFE 179
>gi|390458309|ref|XP_003732088.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Callithrix jacchus]
Length = 348
Score = 99.0 bits (245), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 48 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 107
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 108 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 164
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 165 QLSTGEEFGLVEEKVLCRIHYD 186
>gi|391339813|ref|XP_003744241.1| PREDICTED: sodium-coupled monocarboxylate transporter 1-like
[Metaseiulus occidentalis]
Length = 707
Score = 99.0 bits (245), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 3/119 (2%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C CG+ I ER L+ + WH DCL+C CDC L E ST + + N + CK+DY R FG
Sbjct: 455 CGGCGQLILERVQLQVDNCSWHVDCLRCCVCDCLL-EKDSTCFFRDNNVYCKQDYARQFG 513
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
C+ CT+ I + + V RA++ VYHL CFAC++C + G+ F L D ++LC+ +
Sbjct: 514 VR--CSKCTRGIQSSDWVRRARDQVYHLACFACEECKRQLSTGEEFALHDGRVLCKIHF 570
>gi|345319701|ref|XP_001512541.2| PREDICTED: LIM domain only protein 3-like, partial [Ornithorhynchus
anatinus]
Length = 70
Score = 99.0 bits (245), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 45/58 (77%), Positives = 51/58 (87%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYL 109
K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYL
Sbjct: 13 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYL 70
>gi|348578264|ref|XP_003474903.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 3 [Cavia
porcellus]
Length = 321
Score = 99.0 bits (245), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 77/145 (53%), Gaps = 12/145 (8%)
Query: 38 VTQGALAGGASGGLKE--------CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG 89
+ +GA G G+ CA CG +I++R+ L A+D WH CLKC C+C+L
Sbjct: 38 LAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLA 95
Query: 90 -EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 148
E T + K I CK DY R F + CA C I A EMVMRA+++VYHL CF C
Sbjct: 96 LESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCST 154
Query: 149 CNHRFCVGDRFYLCDNKILCEYDYE 173
CN GD F + D+ + C +E
Sbjct: 155 CNKTLTTGDHFGMKDSLVYCRAHFE 179
>gi|405961382|gb|EKC27193.1| LIM/homeobox protein Lhx9 [Crassostrea gigas]
Length = 415
Score = 99.0 bits (245), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 71/121 (58%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG RI +R+ L A+D WH +CLKC C+C++G + T + + I CK DY R +
Sbjct: 62 CAGCGSRIFDRYYLMAVDKQWHVNCLKC--CECKIGLDSELTCFARDGNIYCKEDYYRRY 119
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
C C + I A E+VMRAK+ V+H+ CF C CN GD+F + D+ I C DY
Sbjct: 120 AVK-RCTRCHQGITANELVMRAKDLVFHINCFTCASCNKTLTTGDQFGMQDDLIYCRTDY 178
Query: 173 E 173
E
Sbjct: 179 E 179
>gi|344287033|ref|XP_003415260.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Loxodonta
africana]
Length = 382
Score = 99.0 bits (245), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 88/166 (53%), Gaps = 9/166 (5%)
Query: 18 FDSLRLATHYQVDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHED 77
D L++ ++Q + T AS +L G A C C + I++RFLL+ D FWHE
Sbjct: 2 LDGLKMEENFQSAIETSASF---SSLLGRAVSPKSVCEGCQRVISDRFLLRLNDSFWHEQ 58
Query: 78 CLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNN 137
C+ C C L +T + + + CK DY +LF C C + I E VMRA+ +
Sbjct: 59 CVLCASCKEPLE---TTCFYRDKKLYCKYDYEKLFAVK--CGGCFEAIAPNEFVMRAQKS 113
Query: 138 VYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFANIA 182
VYHL CF C C + GD F L + ++LC+ DYE ER++ + ++
Sbjct: 114 VYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSLVS 159
>gi|5738960|dbj|BAA83423.1| LIM-homeodomain (LHX) protein 6.1b [Homo sapiens]
Length = 348
Score = 99.0 bits (245), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 48 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 107
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 108 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 164
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 165 QLSTGEEFGLVEEKVLCRIHYD 186
>gi|332229919|ref|XP_003264134.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 3 [Nomascus
leucogenys]
Length = 391
Score = 99.0 bits (245), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 77 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 136
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 137 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 193
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 194 QLSTGEEFGLVEEKVLCRIHYD 215
>gi|301760410|ref|XP_002916006.1| PREDICTED: LIM/homeobox protein Lhx6-like [Ailuropoda melanoleuca]
Length = 390
Score = 99.0 bits (245), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 75 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 134
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 135 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 191
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 192 QLSTGEEFGLVEEKVLCRIHYD 213
>gi|148707230|gb|EDL39177.1| LIM homeobox transcription factor 1 alpha [Mus musculus]
Length = 352
Score = 99.0 bits (245), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 88/166 (53%), Gaps = 9/166 (5%)
Query: 18 FDSLRLATHYQVDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHED 77
D L++ ++Q + T AS +L G A C C + I++RFLL+ D FWHE
Sbjct: 2 LDGLKMEENFQSAIETSASF---SSLLGRAVSPKSVCEGCQRVISDRFLLRLNDSFWHEQ 58
Query: 78 CLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNN 137
C++C C L +T + + + CK Y +LF C C + I E VMRA+ +
Sbjct: 59 CVQCASCKEPLE---TTCFYRDKKLYCKYHYEKLFAVK--CGGCFEAIAPNEFVMRAQKS 113
Query: 138 VYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFANIA 182
VYHL CF C C + GD F L + ++LC+ DYE ER++ + ++
Sbjct: 114 VYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSLVS 159
>gi|167773589|gb|ABZ92229.1| LIM homeobox 6 [synthetic construct]
Length = 363
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 48 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 107
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 108 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 164
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 165 QLSTGEEFGLVEEKVLCRIHYD 186
>gi|291402698|ref|XP_002717725.1| PREDICTED: LIM homeobox protein 9-like isoform 3 [Oryctolagus
cuniculus]
Length = 321
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 77/145 (53%), Gaps = 12/145 (8%)
Query: 38 VTQGALAGGASGGLKE--------CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG 89
+ +GA G G+ CA CG +I++R+ L A+D WH CLKC C+C+L
Sbjct: 38 LAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLA 95
Query: 90 -EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 148
E T + K I CK DY R F + CA C I A EMVMRA+++VYHL CF C
Sbjct: 96 LESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCST 154
Query: 149 CNHRFCVGDRFYLCDNKILCEYDYE 173
CN GD F + D+ + C +E
Sbjct: 155 CNKTLTTGDHFGMKDSLVYCRAHFE 179
>gi|119611698|gb|EAW91292.1| LIM homeobox 9, isoform CRA_f [Homo sapiens]
Length = 321
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 77/145 (53%), Gaps = 12/145 (8%)
Query: 38 VTQGALAGGASGGLKE--------CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG 89
+ +GA G G+ CA CG +I++R+ L A+D WH CLKC C+C+L
Sbjct: 38 LAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLA 95
Query: 90 -EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 148
E T + K I CK DY R F + CA C I A EMVMRA+++VYHL CF C
Sbjct: 96 LESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCST 154
Query: 149 CNHRFCVGDRFYLCDNKILCEYDYE 173
CN GD F + D+ + C +E
Sbjct: 155 CNKTLTTGDHFGMKDSLVYCRAHFE 179
>gi|355567465|gb|EHH23806.1| hypothetical protein EGK_07356 [Macaca mulatta]
Length = 363
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 48 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 107
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 108 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 164
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 165 QLSTGEEFGLVEEKVLCRIHYD 186
>gi|348570158|ref|XP_003470864.1| PREDICTED: LIM/homeobox protein Lhx6-like [Cavia porcellus]
Length = 363
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 48 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 107
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 108 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 164
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 165 QLSTGEEFGLVEEKVLCRIHYD 186
>gi|4809142|gb|AAD30110.1|AF134761_1 LIM-homeodomain type transcription factor Lhx9 [Mus musculus]
Length = 300
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 77/145 (53%), Gaps = 12/145 (8%)
Query: 38 VTQGALAGGASGGLKE--------CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG 89
+T+G G G+ CA CG +I++R+ L A+D WH CLKC C+C+L
Sbjct: 38 LTKGTQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLA 95
Query: 90 -EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 148
E T + K I CK DY R F + CA C I A EMVMRA+++VYHL CF C
Sbjct: 96 LESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCST 154
Query: 149 CNHRFCVGDRFYLCDNKILCEYDYE 173
CN GD F + D+ + C +E
Sbjct: 155 CNKTLTTGDHFGMKDSLVYCRAHFE 179
>gi|66792874|ref|NP_001019715.1| LIM/homeobox protein Lhx9 [Bos taurus]
gi|61555226|gb|AAX46681.1| LIM homeobox 9 [Bos taurus]
gi|296478851|tpg|DAA20966.1| TPA: LIM/homeobox protein Lhx9 [Bos taurus]
Length = 378
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 76/145 (52%), Gaps = 12/145 (8%)
Query: 38 VTQGALAGGASGGLKE--------CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG 89
+ +GA G G+ CA CG +I +R+ L A+D WH CLKC C+C+L
Sbjct: 28 LAKGAQLNGRDAGMPPLSPEKPALCAGCGGKIADRYYLLAVDKQWHLRCLKC--CECKLA 85
Query: 90 -EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 148
E T + K I CK DY R F + CA C I A EMVMRA+++VYHL CF C
Sbjct: 86 LESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCST 144
Query: 149 CNHRFCVGDRFYLCDNKILCEYDYE 173
CN GD F + D+ + C +E
Sbjct: 145 CNKTLTTGDHFGMKDSLVYCRAHFE 169
>gi|334191691|ref|NP_001229263.1| LIM/homeobox protein Lhx6 isoform 4 [Homo sapiens]
gi|90185239|sp|Q9UPM6.2|LHX6_HUMAN RecName: Full=LIM/homeobox protein Lhx6; Short=LIM homeobox protein
6; AltName: Full=LIM/homeobox protein Lhx6.1
gi|7018428|emb|CAB66505.1| hypothetical protein [Homo sapiens]
gi|74353529|gb|AAI03938.1| LIM homeobox 6 [Homo sapiens]
gi|117646920|emb|CAL37575.1| hypothetical protein [synthetic construct]
gi|119607922|gb|EAW87516.1| LIM homeobox 6, isoform CRA_b [Homo sapiens]
gi|119607923|gb|EAW87517.1| LIM homeobox 6, isoform CRA_b [Homo sapiens]
gi|158260677|dbj|BAF82516.1| unnamed protein product [Homo sapiens]
gi|189054037|dbj|BAG36544.1| unnamed protein product [Homo sapiens]
Length = 363
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 48 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 107
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 108 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 164
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 165 QLSTGEEFGLVEEKVLCRIHYD 186
>gi|74355622|gb|AAI03937.1| LIM homeobox 6 [Homo sapiens]
gi|119607921|gb|EAW87515.1| LIM homeobox 6, isoform CRA_a [Homo sapiens]
Length = 348
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 48 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 107
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 108 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 164
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 165 QLSTGEEFGLVEEKVLCRIHYD 186
>gi|31077136|ref|NP_852032.1| LIM/homeobox protein Lhx9 [Rattus norvegicus]
gi|81895227|sp|Q80W90.1|LHX9_RAT RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
9
gi|30525882|gb|AAP32472.1| LIM-homeodomain type transcription factor Lhx9 [Rattus norvegicus]
Length = 388
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 70/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 62 CAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF 119
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA+++VYHL CF C CN GD F + D+ + C +
Sbjct: 120 -SVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHF 178
Query: 173 E 173
E
Sbjct: 179 E 179
>gi|410978995|ref|XP_003995872.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Felis catus]
Length = 363
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 48 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 107
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 108 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 164
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 165 QLSTGEEFGLVEEKVLCRIHYD 186
>gi|395824117|ref|XP_003785317.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Otolemur garnettii]
Length = 377
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 77 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 136
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 137 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 193
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 194 QLSTGEEFGLVEEKVLCRIHYD 215
>gi|5738958|dbj|BAA83422.1| LIM-homeodomain (LHX) protein 6.1a [Homo sapiens]
Length = 363
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 48 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 107
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 108 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 164
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 165 QLSTGEEFGLVEEKVLCRIHYD 186
>gi|345802215|ref|XP_547330.3| PREDICTED: LIM/homeobox protein Lhx8 [Canis lupus familiaris]
Length = 462
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 68/120 (56%), Gaps = 3/120 (2%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C SCG+ I +++LLK DL WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 191 CNSCGREIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 249
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
T C+ C + I + + V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 250 T--RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 307
>gi|297270224|ref|XP_001088818.2| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Macaca mulatta]
Length = 377
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 77 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 136
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 137 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 193
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 194 QLSTGEEFGLVEEKVLCRIHYD 215
>gi|134284361|ref|NP_954629.2| LIM/homeobox protein Lhx6 isoform 2 [Homo sapiens]
gi|297685272|ref|XP_002820219.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Pongo abelii]
Length = 377
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 77 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 136
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 137 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 193
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 194 QLSTGEEFGLVEEKVLCRIHYD 215
>gi|390458307|ref|XP_002806566.2| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Callithrix jacchus]
Length = 363
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 48 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 107
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 108 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 164
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 165 QLSTGEEFGLVEEKVLCRIHYD 186
>gi|403266045|ref|XP_003925208.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Saimiri boliviensis
boliviensis]
Length = 366
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 66 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 125
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 126 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 182
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 183 QLSTGEEFGLVEEKVLCRIHYD 204
>gi|354485102|ref|XP_003504723.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 2 [Cricetulus
griseus]
Length = 397
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 70/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 71 CAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF 128
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA+++VYHL CF C CN GD F + D+ + C +
Sbjct: 129 -SVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHF 187
Query: 173 E 173
E
Sbjct: 188 E 188
>gi|410043123|ref|XP_003312314.2| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Pan troglodytes]
Length = 348
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 48 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 107
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 108 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 164
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 165 QLSTGEEFGLVEEKVLCRIHYD 186
>gi|410978997|ref|XP_003995873.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Felis catus]
Length = 404
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 66 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 125
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 126 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 182
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 183 QLSTGEEFGLVEEKVLCRIHYD 204
>gi|390458313|ref|XP_003732090.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 4 [Callithrix jacchus]
Length = 366
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 66 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 125
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 126 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 182
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 183 QLSTGEEFGLVEEKVLCRIHYD 204
>gi|334191689|ref|NP_001229262.1| LIM/homeobox protein Lhx6 isoform 3 [Homo sapiens]
gi|221041678|dbj|BAH12516.1| unnamed protein product [Homo sapiens]
Length = 366
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 66 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 125
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 126 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 182
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 183 QLSTGEEFGLVEEKVLCRIHYD 204
>gi|117306370|gb|AAI26705.1| LHX9 protein [Bos taurus]
Length = 388
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 76/145 (52%), Gaps = 12/145 (8%)
Query: 38 VTQGALAGGASGGLKE--------CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG 89
+ +GA G G+ CA CG +I +R+ L A+D WH CLKC C+C+L
Sbjct: 38 LAKGAQLNGRDAGMPPLSPEKPALCAGCGGKIADRYYLLAVDKQWHLRCLKC--CECKLA 95
Query: 90 -EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 148
E T + K I CK DY R F + CA C I A EMVMRA+++VYHL CF C
Sbjct: 96 LESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCST 154
Query: 149 CNHRFCVGDRFYLCDNKILCEYDYE 173
CN GD F + D+ + C +E
Sbjct: 155 CNKTLTTGDHFGMKDSLVYCRAHFE 179
>gi|148676721|gb|EDL08668.1| LIM homeobox protein 6, isoform CRA_b [Mus musculus]
Length = 380
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 80 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 139
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 140 NS-CYIKNKEIYCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 196
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 197 QLSTGEEFGLVEEKVLCRIHYD 218
>gi|110748616|gb|ABG89861.1| Lhx6, partial [Astyanax mexicanus]
Length = 303
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 67/120 (55%), Gaps = 3/120 (2%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CASCG I +R+LLK +L WH CL+C C L + S+ Y K I CK DY FG
Sbjct: 110 CASCGLEILDRYLLKVNNLIWHXRCLECSVCRTSLRQ-HSSCYIKNKEIFCKMDYFSRFG 168
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
T CA C + I A + V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 169 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 226
>gi|281337700|gb|EFB13284.1| hypothetical protein PANDA_004030 [Ailuropoda melanoleuca]
Length = 360
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 50 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 109
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 110 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 166
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 167 QLSTGEEFGLVEEKVLCRIHYD 188
>gi|301605176|ref|XP_002932201.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 2 [Xenopus
(Silurana) tropicalis]
Length = 398
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 72 CAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF 129
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA+ +VYHL CF C CN GD F + +N + C +
Sbjct: 130 -SVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLSTGDHFGMKENLVYCRIHF 188
Query: 173 E 173
E
Sbjct: 189 E 189
>gi|402896489|ref|XP_003911330.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx6 [Papio
anubis]
Length = 390
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 77 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 136
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 137 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 193
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 194 QLSTGEEFGLVEEKVLCRIHYD 215
>gi|224471838|sp|A0JNI8.2|LHX9_BOVIN RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
9
gi|110665672|gb|ABG81482.1| LIM homeobox 9 [Bos taurus]
Length = 397
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 76/145 (52%), Gaps = 12/145 (8%)
Query: 38 VTQGALAGGASGGLKE--------CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG 89
+ +GA G G+ CA CG +I +R+ L A+D WH CLKC C+C+L
Sbjct: 47 LAKGAQLNGRDAGMPPLSPEKPALCAGCGGKIADRYYLLAVDKQWHLRCLKC--CECKLA 104
Query: 90 -EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 148
E T + K I CK DY R F + CA C I A EMVMRA+++VYHL CF C
Sbjct: 105 LESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCST 163
Query: 149 CNHRFCVGDRFYLCDNKILCEYDYE 173
CN GD F + D+ + C +E
Sbjct: 164 CNKTLTTGDHFGMKDSLVYCRAHFE 188
>gi|440904877|gb|ELR55334.1| LIM/homeobox protein Lhx9 [Bos grunniens mutus]
Length = 397
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 76/145 (52%), Gaps = 12/145 (8%)
Query: 38 VTQGALAGGASGGLKE--------CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG 89
+ +GA G G+ CA CG +I +R+ L A+D WH CLKC C+C+L
Sbjct: 47 LAKGAQLNGRDAGMPPLSPEKPALCAGCGGKIADRYYLLAVDKQWHLRCLKC--CECKLA 104
Query: 90 -EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 148
E T + K I CK DY R F + CA C I A EMVMRA+++VYHL CF C
Sbjct: 105 LESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCST 163
Query: 149 CNHRFCVGDRFYLCDNKILCEYDYE 173
CN GD F + D+ + C +E
Sbjct: 164 CNKTLTTGDHFGMKDSLVYCRAHFE 188
>gi|297270226|ref|XP_002800034.1| PREDICTED: LIM/homeobox protein Lhx6 [Macaca mulatta]
Length = 366
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 66 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 125
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 126 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 182
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 183 QLSTGEEFGLVEEKVLCRIHYD 204
>gi|410043125|ref|XP_003951564.1| PREDICTED: LIM/homeobox protein Lhx6 [Pan troglodytes]
Length = 366
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 66 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 125
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 126 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 182
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 183 QLSTGEEFGLVEEKVLCRIHYD 204
>gi|332832786|ref|XP_001135172.2| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Pan troglodytes]
Length = 392
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 77 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 136
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 137 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 193
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 194 QLSTGEEFGLVEEKVLCRIHYD 215
>gi|335296199|ref|XP_003130643.2| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Sus scrofa]
Length = 399
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 76/145 (52%), Gaps = 12/145 (8%)
Query: 38 VTQGALAGGASGGLKE--------CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG 89
+ +GA G G+ CA CG +I +R+ L A+D WH CLKC C+C+L
Sbjct: 47 LAKGAQLNGRDAGMPPLSPEKPALCAGCGGKIADRYYLLAVDKQWHLRCLKC--CECKLA 104
Query: 90 -EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 148
E T + K I CK DY R F + CA C I A EMVMRA+++VYHL CF C
Sbjct: 105 LESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCST 163
Query: 149 CNHRFCVGDRFYLCDNKILCEYDYE 173
CN GD F + D+ + C +E
Sbjct: 164 CNKTLTTGDHFGMKDSLVYCRAHFE 188
>gi|351702111|gb|EHB05030.1| LIM/homeobox protein Lhx2 [Heterocephalus glaber]
Length = 502
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 79/157 (50%), Gaps = 4/157 (2%)
Query: 18 FDSLRLATHYQVDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHED 77
F S A+ + + G + +S CA CG +I++R+ L A+D WH
Sbjct: 129 FRSPAAASPREKGEPAGSPGAPAGTMPSISSDRAALCAGCGGKISDRYYLLAVDKQWHMR 188
Query: 78 CLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKN 136
CLKC C+C+L E T + K I CK DY R F + CA C I A EMVMRA++
Sbjct: 189 CLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARD 245
Query: 137 NVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
VYHL CF C CN GD F + D+ + C +E
Sbjct: 246 LVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFE 282
>gi|403266043|ref|XP_003925207.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Saimiri boliviensis
boliviensis]
Length = 381
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 66 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 125
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 126 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 182
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 183 QLSTGEEFGLVEEKVLCRIHYD 204
>gi|395824115|ref|XP_003785316.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Otolemur garnettii]
Length = 392
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 77 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 136
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 137 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 193
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 194 QLSTGEEFGLVEEKVLCRIHYD 215
>gi|300797193|ref|NP_001179777.1| LIM/homeobox protein Lhx6 [Bos taurus]
gi|296482368|tpg|DAA24483.1| TPA: LIM homeobox 6 isoform 1 [Bos taurus]
Length = 392
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 77 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 136
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 137 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 193
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 194 QLSTGEEFGLVEEKVLCRIHYD 215
>gi|297685274|ref|XP_002820220.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 3 [Pongo abelii]
Length = 366
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 66 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 125
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 126 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 182
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 183 QLSTGEEFGLVEEKVLCRIHYD 204
>gi|296482369|tpg|DAA24484.1| TPA: LIM homeobox 6 isoform 2 [Bos taurus]
Length = 377
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 77 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 136
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 137 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 193
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 194 QLSTGEEFGLVEEKVLCRIHYD 215
>gi|440906624|gb|ELR56864.1| LIM/homeobox protein Lhx6, partial [Bos grunniens mutus]
Length = 360
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 50 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 109
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 110 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 166
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 167 QLSTGEEFGLVEEKVLCRIHYD 188
>gi|390458311|ref|XP_003732089.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 3 [Callithrix jacchus]
Length = 381
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 66 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 125
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 126 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 182
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 183 QLSTGEEFGLVEEKVLCRIHYD 204
>gi|297270222|ref|XP_001089041.2| PREDICTED: LIM/homeobox protein Lhx6 isoform 3 [Macaca mulatta]
Length = 392
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 77 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 136
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 137 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 193
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 194 QLSTGEEFGLVEEKVLCRIHYD 215
>gi|134284359|ref|NP_055183.2| LIM/homeobox protein Lhx6 isoform 1 [Homo sapiens]
gi|297685270|ref|XP_002820218.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Pongo abelii]
gi|221042862|dbj|BAH13108.1| unnamed protein product [Homo sapiens]
Length = 392
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 77 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 136
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 137 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 193
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 194 QLSTGEEFGLVEEKVLCRIHYD 215
>gi|354485100|ref|XP_003504722.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 1 [Cricetulus
griseus]
gi|118763751|gb|AAI28723.1| Lhx9 protein [Rattus norvegicus]
Length = 321
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 70/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 62 CAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF 119
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA+++VYHL CF C CN GD F + D+ + C +
Sbjct: 120 -SVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHF 178
Query: 173 E 173
E
Sbjct: 179 E 179
>gi|395824119|ref|XP_003785318.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 3 [Otolemur garnettii]
Length = 366
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 66 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 125
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 126 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 182
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 183 QLSTGEEFGLVEEKVLCRIHYD 204
>gi|335296201|ref|XP_003357709.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Sus scrofa]
Length = 388
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 76/145 (52%), Gaps = 12/145 (8%)
Query: 38 VTQGALAGGASGGLKE--------CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG 89
+ +GA G G+ CA CG +I +R+ L A+D WH CLKC C+C+L
Sbjct: 38 LAKGAQLNGRDAGMPPLSPEKPALCAGCGGKIADRYYLLAVDKQWHLRCLKC--CECKLA 95
Query: 90 -EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 148
E T + K I CK DY R F + CA C I A EMVMRA+++VYHL CF C
Sbjct: 96 LESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCST 154
Query: 149 CNHRFCVGDRFYLCDNKILCEYDYE 173
CN GD F + D+ + C +E
Sbjct: 155 CNKTLTTGDHFGMKDSLVYCRAHFE 179
>gi|215276334|gb|ACJ65031.1| LHX9 [Xenopus laevis]
Length = 399
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 70/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 73 CAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLTLESELTCFAKDGSIYCKEDYYRRF 130
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA+ +VYHL CF C CN GD+F + +N + C +
Sbjct: 131 -SVKRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLSTGDQFGMKENLVYCRIHF 189
Query: 173 E 173
E
Sbjct: 190 E 190
>gi|354486854|ref|XP_003505592.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like
[Cricetulus griseus]
Length = 382
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 88/166 (53%), Gaps = 9/166 (5%)
Query: 18 FDSLRLATHYQVDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHED 77
D L++ ++Q + T AS +L G A C C + I++RFLL+ D FWHE
Sbjct: 2 LDGLKMEENFQSSIETSASF---SSLLGRAVSPKSVCEGCQRVISDRFLLRLNDSFWHEQ 58
Query: 78 CLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNN 137
C++C C L +T + + + CK Y +LF C C + I E VMRA+ +
Sbjct: 59 CVQCASCKEPLE---TTCFYRDKKLYCKYHYEKLFAVK--CGGCFEAIAPNEFVMRAQKS 113
Query: 138 VYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFANIA 182
VYHL CF C C + GD F L + ++LC+ DYE ER++ + ++
Sbjct: 114 VYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSLVS 159
>gi|348505840|ref|XP_003440468.1| PREDICTED: insulin gene enhancer protein isl-2a-like [Oreochromis
niloticus]
Length = 359
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 79/145 (54%), Gaps = 4/145 (2%)
Query: 29 VDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCR 87
VD+ + S + G+ C CG +I ++++L+ + DL WH CLKC C+
Sbjct: 2 VDILLNTSFLDDMGDHSKKKSGIAMCVGCGSQIHDQYILRVSPDLEWHAACLKCAECNQH 61
Query: 88 LGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQ 147
L E T + + CKRDY RLFG CA C + ++VMRA++NVYH+ECF C
Sbjct: 62 LDET-CTCFVRDGKTYCKRDYARLFGIK--CAKCNMGFCSSDLVMRARDNVYHMECFRCS 118
Query: 148 QCNHRFCVGDRFYLCDNKILCEYDY 172
C+ GD F L D+++LC D+
Sbjct: 119 VCSRHLLPGDEFSLRDDELLCRADH 143
>gi|148676722|gb|EDL08669.1| LIM homeobox protein 6, isoform CRA_c [Mus musculus]
Length = 395
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 80 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 139
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 140 NS-CYIKNKEIYCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 196
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 197 QLSTGEEFGLVEEKVLCRIHYD 218
>gi|51571947|ref|NP_001003980.1| LIM/homeobox protein Lhx8 [Danio rerio]
gi|50953779|gb|AAT90496.1| Lhx7 [Danio rerio]
gi|108742021|gb|AAI17602.1| LIM homeobox 8 [Danio rerio]
Length = 332
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 65/120 (54%), Gaps = 3/120 (2%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C SCG I +++LLK D+ WH CL C C LG S Y K I CK DY R +G
Sbjct: 51 CTSCGTEIVDKYLLKVNDMCWHVRCLSCSVCQTSLGRHIS-CYIKEKEIFCKLDYFRKYG 109
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
T CA C + I + + V RAK N YHL CFAC C + G+ F L D ++LC Y+
Sbjct: 110 T--RCAHCGRNIHSNDWVRRAKGNTYHLACFACFSCKRQLSTGEEFALVDERVLCRVHYD 167
>gi|348586764|ref|XP_003479138.1| PREDICTED: LIM/homeobox protein Lhx8-like [Cavia porcellus]
Length = 485
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 68/120 (56%), Gaps = 3/120 (2%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C+SCG I +++LLK DL WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 215 CSSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 273
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
T C+ C + I + + V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 274 T--RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 331
>gi|359070468|ref|XP_002691651.2| PREDICTED: uncharacterized protein LOC100337389 [Bos taurus]
Length = 779
Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 48/134 (35%), Positives = 76/134 (56%), Gaps = 6/134 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C C + I++RFL++ + WHE+CL+C C L ++ Y + + CK+DY +LF
Sbjct: 433 CEGCQRPISDRFLMRVNESSWHEECLQCAACQQALT---TSCYFRDRKLYCKQDYQQLFA 489
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
C+ C + I E VMRA VYHL CF C C + GD F L + ++LC+ DYE
Sbjct: 490 AK--CSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYE 547
Query: 174 -ERQVFANIAYNPS 186
E+ + ++++ + S
Sbjct: 548 KEKDLLSSVSPDES 561
>gi|339236177|ref|XP_003379643.1| LIM/homeobox protein Awh [Trichinella spiralis]
gi|316977684|gb|EFV60755.1| LIM/homeobox protein Awh [Trichinella spiralis]
Length = 902
Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 47/121 (38%), Positives = 66/121 (54%), Gaps = 3/121 (2%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C+ CG I +R+LL+ FWH +CL+C C L ++ S Y K + + CK Y R F
Sbjct: 623 CSGCGNLIYDRYLLQVNQQFWHVNCLRCSSCTALLDKLPSC-YLKEDKVFCKMCYQRQFS 681
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
C C +VI + V RA+ VYHL CFAC C + G+ F L D+++LC+ Y
Sbjct: 682 VK--CDRCNQVIQSNHWVRRARQYVYHLACFACDSCQRQLSTGEEFALQDSRVLCKQHYM 739
Query: 174 E 174
E
Sbjct: 740 E 740
>gi|29570244|gb|AAO85392.1| LIM-homeobox protein 9 [Sus scrofa]
Length = 369
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 76/145 (52%), Gaps = 12/145 (8%)
Query: 38 VTQGALAGGASGGLKE--------CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG 89
+ +GA G G+ CA CG +I +R+ L A+D WH CLKC C+C+L
Sbjct: 47 LAKGAQLNGRDAGMPPLSPEKPALCAGCGGKIADRYYLLAVDKQWHLRCLKC--CECKLA 104
Query: 90 -EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 148
E T + K I CK DY R F + CA C I A EMVMRA+++VYHL CF C
Sbjct: 105 LESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCST 163
Query: 149 CNHRFCVGDRFYLCDNKILCEYDYE 173
CN GD F + D+ + C +E
Sbjct: 164 CNKTLTTGDHFGMKDSLVYCRAHFE 188
>gi|27923333|gb|AAO27570.1| LIM-homeodomain type transcription factor Lhx9 [Rattus norvegicus]
Length = 325
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 70/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 40 CAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF 97
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA+++VYHL CF C CN GD F + D+ + C +
Sbjct: 98 -SVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHF 156
Query: 173 E 173
E
Sbjct: 157 E 157
>gi|348536383|ref|XP_003455676.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 2 [Oreochromis
niloticus]
Length = 333
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 70/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 73 CAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF 130
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA+++VYHL CF C CN GD F + D+ + C +
Sbjct: 131 -SVQRCARCHLGISASEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFGMKDSLVYCRLHF 189
Query: 173 E 173
E
Sbjct: 190 E 190
>gi|345321288|ref|XP_001521123.2| PREDICTED: LIM/homeobox protein Lhx8 isoform 1 [Ornithorhynchus
anatinus]
Length = 347
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 68/120 (56%), Gaps = 3/120 (2%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C+SCG I +++LLK DL WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 66 CSSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 124
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
T C+ C + I + + V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 125 T--RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 182
>gi|344271983|ref|XP_003407816.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Loxodonta africana]
Length = 377
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 77 STPSVCSPPSAASSVPSTGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 136
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 137 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 193
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 194 QLSTGEEFGLVEEKVLCRIHYD 215
>gi|397526998|ref|XP_003833397.1| PREDICTED: LIM/homeobox protein Lhx6 [Pan paniscus]
Length = 377
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 62 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 121
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 122 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 178
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 179 QLSTGEEFGLVEEKVLCRIHYD 200
>gi|94957756|ref|NP_001035556.1| LIM/homeobox protein Lhx8 [Gallus gallus]
gi|71800649|gb|AAZ41374.1| LIM homeodomain protein [Gallus gallus]
Length = 347
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 68/120 (56%), Gaps = 3/120 (2%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C+SCG I +++LLK DL WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 66 CSSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 124
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
T C+ C + I + + V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 125 TR--CSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 182
>gi|301605174|ref|XP_002932200.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 1 [Xenopus
(Silurana) tropicalis]
Length = 331
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 72 CAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF 129
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA+ +VYHL CF C CN GD F + +N + C +
Sbjct: 130 -SVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLSTGDHFGMKENLVYCRIHF 188
Query: 173 E 173
E
Sbjct: 189 E 189
>gi|345321290|ref|XP_003430404.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 2 [Ornithorhynchus
anatinus]
Length = 347
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 68/120 (56%), Gaps = 3/120 (2%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C+SCG I +++LLK DL WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 66 CSSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 124
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
T C+ C + I + + V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 125 TR--CSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 182
>gi|133778048|gb|AAI27382.2| LIM homeobox 2 [Danio rerio]
gi|182888988|gb|AAI64490.1| Lhx2 protein [Danio rerio]
Length = 396
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 70/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 110
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA++ VYHL CF C CN GD F + D+ + C+ +
Sbjct: 111 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCKLHF 169
Query: 173 E 173
E
Sbjct: 170 E 170
>gi|344254817|gb|EGW10921.1| LIM/homeobox protein Lhx9 [Cricetulus griseus]
Length = 311
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 70/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 52 CAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF 109
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA+++VYHL CF C CN GD F + D+ + C +
Sbjct: 110 -SVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHF 168
Query: 173 E 173
E
Sbjct: 169 E 169
>gi|354500655|ref|XP_003512414.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 3 [Cricetulus griseus]
Length = 366
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 66 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 125
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 126 NS-CYIKNKEIYCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 182
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 183 QLSTGEEFGLVEEKVLCRIHYD 204
>gi|149058121|gb|EDM09278.1| LIM homeobox transcription factor 1 alpha (predicted) [Rattus
norvegicus]
Length = 263
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 89/170 (52%), Gaps = 9/170 (5%)
Query: 18 FDSLRLATHYQVDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHED 77
D L++ ++Q + T AS +L G A C C + I++RFLL+ D FWHE
Sbjct: 2 LDGLKMEENFQSAIETSASF---SSLLGRAVSPKSVCEGCQRVISDRFLLRLNDSFWHEQ 58
Query: 78 CLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNN 137
C++C C L +T + + + CK Y +LF C C + I E VMRA+ +
Sbjct: 59 CVQCASCKEPLE---TTCFYRDKKLYCKYHYEKLFAVK--CGGCFEAIAPNEFVMRAQKS 113
Query: 138 VYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFANIAYNPS 186
VYHL CF C C + GD F L + ++LC+ DYE ER++ + ++ S
Sbjct: 114 VYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSLVSPAAS 163
>gi|358411510|ref|XP_589896.5| PREDICTED: LIM/homeobox protein Lhx8 [Bos taurus]
Length = 443
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 68/120 (56%), Gaps = 3/120 (2%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C+SCG I +++LLK DL WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 172 CSSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 230
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
T C+ C + I + + V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 231 TR--CSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 288
>gi|133893073|ref|NP_001076594.1| LIM/homeobox protein Lhx6 isoform 2 [Mus musculus]
Length = 377
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 77 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 136
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 137 NS-CYIKNKEIYCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 193
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 194 QLSTGEEFGLVEEKVLCRIHYD 215
>gi|28316900|gb|AAO39472.1| RE70568p [Drosophila melanogaster]
Length = 523
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 74/128 (57%), Gaps = 9/128 (7%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYL- 109
+ +C C + I +RF+LK L+ WH CL+C C G++ + + + CK D+
Sbjct: 119 IPKCGGCHELILDRFILKVLERTWHAKCLQCSECH---GQLNDKCFARNGQLFCKEDFFK 175
Query: 110 --RLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKI 166
R +GT C+AC IP ++V RA++NVYHL+CF C C+ GD FYL D K+
Sbjct: 176 SNRRYGTK--CSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKL 233
Query: 167 LCEYDYEE 174
+C+ DYEE
Sbjct: 234 ICKRDYEE 241
>gi|344241263|gb|EGV97366.1| LIM/homeobox protein Lhx6 [Cricetulus griseus]
Length = 363
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 48 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 107
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 108 NS-CYIKNKEIYCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 164
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 165 QLSTGEEFGLVEEKVLCRIHYD 186
>gi|5738954|dbj|BAA83420.1| LIM-homeodomain (LHX) protein 6.1b [Mus musculus]
Length = 348
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 48 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 107
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 108 NS-CYIKNKEIYCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 164
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 165 QLSTGEEFGLVEEKVLCRIHYD 186
>gi|431920332|gb|ELK18367.1| Insulin protein enhancer protein ISL-2 [Pteropus alecto]
Length = 306
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 75/130 (57%), Gaps = 4/130 (3%)
Query: 44 AGGASGGLKECASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLI 102
AG G C CG +I ++F+L+ + DL WH CLKC C L E T + +
Sbjct: 21 AGTEKPGTATCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDET-CTCFVRDGKT 79
Query: 103 LCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC 162
CKRDY+RLFG CA C + ++VMRA+++VYH+ECF C C+ + GD F L
Sbjct: 80 YCKRDYVRLFGIK--CAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLR 137
Query: 163 DNKILCEYDY 172
++++LC D+
Sbjct: 138 EHELLCRADH 147
>gi|426218775|ref|XP_004003612.1| PREDICTED: LIM/homeobox protein Lhx8 [Ovis aries]
Length = 442
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 68/120 (56%), Gaps = 3/120 (2%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C+SCG I +++LLK DL WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 161 CSSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 219
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
T C+ C + I + + V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 220 T--RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 277
>gi|354500653|ref|XP_003512413.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Cricetulus griseus]
Length = 377
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 77 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 136
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 137 NS-CYIKNKEIYCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 193
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 194 QLSTGEEFGLVEEKVLCRIHYD 215
>gi|403257739|ref|XP_003921454.1| PREDICTED: LIM/homeobox protein Lhx8 [Saimiri boliviensis
boliviensis]
Length = 346
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 70/132 (53%), Gaps = 3/132 (2%)
Query: 42 ALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANL 101
A G G C SCG I +++LLK DL WH CL C C LG ++ Y K
Sbjct: 53 ASGSGCPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKD 111
Query: 102 ILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYL 161
I CK DY R +GT C+ C + I + + V RAK NVYHL CFAC C + G+ F L
Sbjct: 112 IFCKLDYFRRYGT--RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFAL 169
Query: 162 CDNKILCEYDYE 173
+ K+LC Y+
Sbjct: 170 VEEKVLCRVHYD 181
>gi|344271981|ref|XP_003407815.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Loxodonta africana]
Length = 392
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 77 STPSVCSPPSAASSVPSTGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 136
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 137 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 193
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 194 QLSTGEEFGLVEEKVLCRIHYD 215
>gi|133892051|ref|NP_001076596.1| LIM/homeobox protein Lhx6 isoform 4 [Mus musculus]
gi|148676720|gb|EDL08667.1| LIM homeobox protein 6, isoform CRA_a [Mus musculus]
Length = 348
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 48 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 107
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 108 NS-CYIKNKEIYCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 164
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 165 QLSTGEEFGLVEEKVLCRIHYD 186
>gi|297473064|ref|XP_002686347.1| PREDICTED: LIM/homeobox protein Lhx8 [Bos taurus]
gi|296489244|tpg|DAA31357.1| TPA: LIM domain family member (lim-4)-like [Bos taurus]
Length = 346
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 68/120 (56%), Gaps = 3/120 (2%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C+SCG I +++LLK DL WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 65 CSSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 123
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
T C+ C + I + + V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 124 T--RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 181
>gi|149038911|gb|EDL93131.1| LIM homeobox protein 6 (predicted), isoform CRA_b [Rattus
norvegicus]
Length = 373
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 73 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 132
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 133 NS-CYIKNKEIYCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 189
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 190 QLSTGEEFGLVEEKVLCRIHYD 211
>gi|34733871|gb|AAQ81868.1| LIM homeobox gene protein 2 [Ambystoma mexicanum]
Length = 398
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 110
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA++ VYHL CF C CN GD F + D+ + C +
Sbjct: 111 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCSTCNKMLTTGDHFGMKDSLVYCRLHF 169
Query: 173 E 173
E
Sbjct: 170 E 170
>gi|157821727|ref|NP_001101307.1| LIM/homeobox protein Lhx6 [Rattus norvegicus]
gi|149038910|gb|EDL93130.1| LIM homeobox protein 6 (predicted), isoform CRA_a [Rattus
norvegicus]
Length = 388
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 73 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 132
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 133 NS-CYIKNKEIYCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 189
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 190 QLSTGEEFGLVEEKVLCRIHYD 211
>gi|410979132|ref|XP_003995940.1| PREDICTED: LIM/homeobox protein Lhx2 [Felis catus]
Length = 484
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 12 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 69
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA++ VYHL CF C CN GD F + D+ + C +
Sbjct: 70 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHF 128
Query: 173 E 173
E
Sbjct: 129 E 129
>gi|148676723|gb|EDL08670.1| LIM homeobox protein 6, isoform CRA_d [Mus musculus]
Length = 388
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 73 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 132
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 133 NS-CYIKNKEIYCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 189
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 190 QLSTGEEFGLVEEKVLCRIHYD 211
>gi|348570106|ref|XP_003470838.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Cavia porcellus]
Length = 404
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 75/143 (52%), Gaps = 12/143 (8%)
Query: 40 QGALAGGASGGLKE--------CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-E 90
+G GG S + CA CG +I++R+ L A+D WH CLKC C+C+L E
Sbjct: 30 KGTQKGGRSATMPSISSDRAALCAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLE 87
Query: 91 VGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCN 150
T + K I CK DY R F + CA C I A EMVMRA++ VYHL CF C CN
Sbjct: 88 SELTCFSKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCN 146
Query: 151 HRFCVGDRFYLCDNKILCEYDYE 173
GD F + D+ + C +E
Sbjct: 147 KMLTTGDHFGMKDSLVYCRLHFE 169
>gi|440907910|gb|ELR57994.1| LIM/homeobox protein Lhx8 [Bos grunniens mutus]
Length = 375
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 68/120 (56%), Gaps = 3/120 (2%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C+SCG I +++LLK DL WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 94 CSSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 152
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
T C+ C + I + + V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 153 T--RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 210
>gi|5738956|dbj|BAA83421.1| LIM-homeodomain (LHX) protein 6.1a [Mus musculus]
Length = 363
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 48 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 107
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 108 NS-CYIKNKEIYCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 164
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 165 QLSTGEEFGLVEEKVLCRIHYD 186
>gi|133891794|ref|NP_032526.2| LIM/homeobox protein Lhx6 isoform 1 [Mus musculus]
Length = 392
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 77 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 136
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 137 NS-CYIKNKEIYCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 193
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 194 QLSTGEEFGLVEEKVLCRIHYD 215
>gi|133892446|ref|NP_001076595.1| LIM/homeobox protein Lhx6 isoform 3 [Mus musculus]
gi|341940899|sp|Q9R1R0.2|LHX6_MOUSE RecName: Full=LIM/homeobox protein Lhx6; Short=LIM homeobox protein
6; AltName: Full=LIM/homeobox protein Lhx6.1
gi|40787713|gb|AAH65077.1| Lhx6 protein [Mus musculus]
Length = 363
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 48 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 107
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 108 NS-CYIKNKEIYCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 164
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 165 QLSTGEEFGLVEEKVLCRIHYD 186
>gi|344271985|ref|XP_003407817.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 3 [Loxodonta africana]
Length = 366
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 66 STPSVCSPPSAASSVPSTGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 125
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 126 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 182
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 183 QLSTGEEFGLVEEKVLCRIHYD 204
>gi|350579610|ref|XP_003480648.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx6-like [Sus
scrofa]
Length = 332
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 77 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 136
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 137 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 193
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 194 QLSTGEEFGLVEEKVLCRIHYD 215
>gi|355567447|gb|EHH23788.1| LIM/homeobox protein Lhx2 [Macaca mulatta]
Length = 406
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 110
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA++ VYHL CF C CN GD F + D+ + C +
Sbjct: 111 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHF 169
Query: 173 E 173
E
Sbjct: 170 E 170
>gi|47217395|emb|CAG00755.1| unnamed protein product [Tetraodon nigroviridis]
Length = 343
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 70/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 12 CAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF 69
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA+++VYHL CF C CN GD F + D+ + C +
Sbjct: 70 -SVQRCARCHLGISASEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFGMKDSLVYCRLHF 128
Query: 173 E 173
E
Sbjct: 129 E 129
>gi|354500651|ref|XP_003512412.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Cricetulus griseus]
Length = 392
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 77 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 136
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 137 NS-CYIKNKEIYCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 193
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 194 QLSTGEEFGLVEEKVLCRIHYD 215
>gi|354498706|ref|XP_003511455.1| PREDICTED: LIM/homeobox protein Lhx2-like [Cricetulus griseus]
Length = 475
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 126 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 183
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA++ VYHL CF C CN GD F + D+ + C +
Sbjct: 184 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHF 242
Query: 173 E 173
E
Sbjct: 243 E 243
>gi|1708557|sp|P53408.1|ISL2A_ONCTS RecName: Full=Insulin gene enhancer protein ISL-2A; Short=Islet-2A
Length = 358
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 79/145 (54%), Gaps = 4/145 (2%)
Query: 29 VDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCR 87
VD+ ++S + G+ C CG +I ++++L+ A DL WH CLKC C
Sbjct: 2 VDIIFNSSFLGDMGDHSKKKSGIAMCVGCGSQIHDQYILRVAPDLEWHAACLKCAECSQY 61
Query: 88 LGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQ 147
L E T + + CKRDY+RLFG CA C + ++VMRA++NVYH+ECF C
Sbjct: 62 LDET-CTCFVRDGKTYCKRDYVRLFGIK--CANCNIGFCSSDLVMRARDNVYHMECFRCS 118
Query: 148 QCNHRFCVGDRFYLCDNKILCEYDY 172
C+ GD F L D ++LC D+
Sbjct: 119 VCSRHLLPGDEFSLRDEELLCRADH 143
>gi|187171273|ref|NP_001035099.3| LIM/homeobox protein Lhx2 [Danio rerio]
Length = 427
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 84 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 141
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA++ VYHL CF C CN GD F + D+ + C +
Sbjct: 142 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHF 200
Query: 173 E 173
E
Sbjct: 201 E 201
>gi|444707251|gb|ELW48535.1| LIM/homeobox protein Lhx2 [Tupaia chinensis]
Length = 442
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 110
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA++ VYHL CF C CN GD F + D+ + C +
Sbjct: 111 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHF 169
Query: 173 E 173
E
Sbjct: 170 E 170
>gi|158187529|ref|NP_001099437.2| LIM homeobox transcription factor 1 alpha [Rattus norvegicus]
Length = 382
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 88/166 (53%), Gaps = 9/166 (5%)
Query: 18 FDSLRLATHYQVDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHED 77
D L++ ++Q + T AS +L G A C C + I++RFLL+ D FWHE
Sbjct: 2 LDGLKMEENFQSAIETSASF---SSLLGRAVSPKSVCEGCQRVISDRFLLRLNDSFWHEQ 58
Query: 78 CLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNN 137
C++C C L +T + + + CK Y +LF C C + I E VMRA+ +
Sbjct: 59 CVQCASCKEPLE---TTCFYRDKKLYCKYHYEKLFAVK--CGGCFEAIAPNEFVMRAQKS 113
Query: 138 VYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFANIA 182
VYHL CF C C + GD F L + ++LC+ DYE ER++ + ++
Sbjct: 114 VYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSLVS 159
>gi|547859|sp|Q04650.1|LMX1A_MESAU RecName: Full=LIM homeobox transcription factor 1-alpha; AltName:
Full=LIM/homeobox protein LMX1A; Short=LIM/homeobox
protein 1; Short=LMX-1
gi|587461|emb|CAA57163.1| lmx1.1 [Mesocricetus auratus]
Length = 382
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 88/166 (53%), Gaps = 9/166 (5%)
Query: 18 FDSLRLATHYQVDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHED 77
D L++ ++Q + T AS +L G A C C + I++RFLL+ D FWHE
Sbjct: 2 LDGLKMEENFQSAIETSASF---SSLLGRAVSPKSVCEGCQRVISDRFLLRLNDSFWHEQ 58
Query: 78 CLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNN 137
C++C C L +T + + + CK Y +LF C C + I E VMRA+ +
Sbjct: 59 CVQCASCKEPLE---TTCFYRDKKLYCKYHYEKLFAVK--CGGCFEAIAPNEFVMRAQKS 113
Query: 138 VYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFANIA 182
VYHL CF C C + GD F L + ++LC+ DYE ER++ + ++
Sbjct: 114 VYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSLVS 159
>gi|426223060|ref|XP_004005697.1| PREDICTED: LIM/homeobox protein Lhx2 [Ovis aries]
Length = 404
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 110
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA++ VYHL CF C CN GD F + D+ + C +
Sbjct: 111 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHF 169
Query: 173 E 173
E
Sbjct: 170 E 170
>gi|17298670|ref|NP_387501.1| LIM homeobox transcription factor 1-alpha [Mus musculus]
gi|27923804|sp|Q9JKU8.1|LMX1A_MOUSE RecName: Full=LIM homeobox transcription factor 1-alpha; AltName:
Full=LIM/homeobox protein 1.1; Short=LMX-1.1; AltName:
Full=LIM/homeobox protein LMX1A
gi|7230571|gb|AAF43012.1|AF226662_1 lim homeodomain-containing transcription factor [Mus musculus]
gi|26336939|dbj|BAC32153.1| unnamed protein product [Mus musculus]
gi|80477081|gb|AAI09168.1| LIM homeobox transcription factor 1 alpha [Mus musculus]
gi|80478204|gb|AAI09169.1| LIM homeobox transcription factor 1 alpha [Mus musculus]
Length = 382
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 88/166 (53%), Gaps = 9/166 (5%)
Query: 18 FDSLRLATHYQVDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHED 77
D L++ ++Q + T AS +L G A C C + I++RFLL+ D FWHE
Sbjct: 2 LDGLKMEENFQSAIETSASF---SSLLGRAVSPKSVCEGCQRVISDRFLLRLNDSFWHEQ 58
Query: 78 CLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNN 137
C++C C L +T + + + CK Y +LF C C + I E VMRA+ +
Sbjct: 59 CVQCASCKEPLE---TTCFYRDKKLYCKYHYEKLFAVK--CGGCFEAIAPNEFVMRAQKS 113
Query: 138 VYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFANIA 182
VYHL CF C C + GD F L + ++LC+ DYE ER++ + ++
Sbjct: 114 VYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSLVS 159
>gi|395505659|ref|XP_003757157.1| PREDICTED: LIM/homeobox protein Lhx2 [Sarcophilus harrisii]
Length = 408
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 110
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA++ VYHL CF C CN GD F + D+ + C +
Sbjct: 111 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHF 169
Query: 173 E 173
E
Sbjct: 170 E 170
>gi|391759011|dbj|BAM22649.1| LIM homeobox 3/4, partial [Eptatretus burgeri]
Length = 205
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 76/140 (54%), Gaps = 12/140 (8%)
Query: 34 DASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGS 93
DA +++ A G GG C I +RFLLKAL+ WH CL+C C L E
Sbjct: 18 DAELLSRAAATGPVCGG------CSLPIGDRFLLKALERSWHASCLRCRDCQSPLSE--- 68
Query: 94 TLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRF 153
+ + + CK D+ R FGT CA C + IP + V +A+ V+HL CFAC C +
Sbjct: 69 RCFSRDGALYCKEDFFRRFGTK--CAGCRQGIPPSQAVRKAQERVFHLHCFACSLCGRQL 126
Query: 154 CVGDRFYLCDN-KILCEYDY 172
GD FYL D+ +++C++DY
Sbjct: 127 ATGDLFYLLDDARLVCQHDY 146
>gi|291408369|ref|XP_002720520.1| PREDICTED: LIM homeobox protein 2-like [Oryctolagus cuniculus]
Length = 406
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 110
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA++ VYHL CF C CN GD F + D+ + C +
Sbjct: 111 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHF 169
Query: 173 E 173
E
Sbjct: 170 E 170
>gi|301763072|ref|XP_002916962.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx8-like
[Ailuropoda melanoleuca]
Length = 574
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 67/120 (55%), Gaps = 3/120 (2%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C SCG I +++LLK DL WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 303 CNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 361
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
T C+ C + I + + V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 362 T--RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 419
>gi|190338019|gb|AAI62549.1| LIM homeobox 2 [Danio rerio]
Length = 396
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 110
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA++ VYHL CF C CN GD F + D+ + C +
Sbjct: 111 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHF 169
Query: 173 E 173
E
Sbjct: 170 E 170
>gi|75993708|gb|ABA33890.1| lim homeobox transcription factor 2 [Danio rerio]
Length = 396
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 110
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA++ VYHL CF C CN GD F + D+ + C +
Sbjct: 111 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHF 169
Query: 173 E 173
E
Sbjct: 170 E 170
>gi|345806127|ref|XP_548475.3| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Canis lupus
familiaris]
Length = 363
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/142 (40%), Positives = 72/142 (50%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G CASCG I +R LLK +L WH CL+C C L +
Sbjct: 48 STPSVCSPPSAASSVPSAGKNICASCGLEILDRDLLKVNNLIWHVRCLECSVCRTSLRQQ 107
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 108 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 164
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 165 QLSTGEEFGLVEEKVLCRIHYD 186
>gi|395824161|ref|XP_003785339.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Otolemur garnettii]
Length = 406
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 110
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA++ VYHL CF C CN GD F + D+ + C +
Sbjct: 111 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHF 169
Query: 173 E 173
E
Sbjct: 170 E 170
>gi|6754538|ref|NP_034840.1| LIM/homeobox protein Lhx2 [Mus musculus]
gi|157817308|ref|NP_001100041.1| LIM/homeobox protein Lhx2 [Rattus norvegicus]
gi|8134552|sp|Q9Z0S2.1|LHX2_MOUSE RecName: Full=LIM/homeobox protein Lhx2; Short=Homeobox protein
LH-2; Short=LIM homeobox protein 2
gi|4406516|gb|AAD20012.1| LIM-homeodomain protein MLHX2 [Mus musculus]
gi|26343551|dbj|BAC35432.1| unnamed protein product [Mus musculus]
gi|33416474|gb|AAH55741.1| LIM homeobox protein 2 [Mus musculus]
gi|149047902|gb|EDM00518.1| LIM homeobox protein 2 (predicted) [Rattus norvegicus]
Length = 406
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 110
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA++ VYHL CF C CN GD F + D+ + C +
Sbjct: 111 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHF 169
Query: 173 E 173
E
Sbjct: 170 E 170
>gi|348570108|ref|XP_003470839.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Cavia porcellus]
Length = 406
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 110
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA++ VYHL CF C CN GD F + D+ + C +
Sbjct: 111 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHF 169
Query: 173 E 173
E
Sbjct: 170 E 170
>gi|332229975|ref|XP_003264161.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Nomascus
leucogenys]
Length = 406
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 110
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA++ VYHL CF C CN GD F + D+ + C +
Sbjct: 111 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHF 169
Query: 173 E 173
E
Sbjct: 170 E 170
>gi|270004609|gb|EFA01057.1| hypothetical protein TcasGA2_TC003974 [Tribolium castaneum]
Length = 218
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 75/140 (53%), Gaps = 4/140 (2%)
Query: 35 ASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGS 93
A S +L G ++ CA CG RI +R+ L A+D WH CLKC C+C+L +
Sbjct: 11 AISSPCSSLGGSSTLDGTTCAGCGGRIQDRYYLLAVDRQWHASCLKC--CECKLPLDTEL 68
Query: 94 TLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRF 153
T + + I CK DY R+F T C C I A E+VMRA+++VYHL CF+C C
Sbjct: 69 TCFARDGNIYCKEDYYRMFAVT-RCGRCQAGISANELVMRARDSVYHLHCFSCTSCGIPL 127
Query: 154 CVGDRFYLCDNKILCEYDYE 173
GD F + D I C YE
Sbjct: 128 SKGDHFGMRDGLIYCRPHYE 147
>gi|281427312|ref|NP_001163990.1| LIM/homeobox protein Lhx2 [Sus scrofa]
gi|300794175|ref|NP_001178104.1| LIM/homeobox protein Lhx2 [Bos taurus]
gi|239937382|dbj|BAH79127.1| LIM homeobox protein 2 [Sus scrofa]
gi|296482193|tpg|DAA24308.1| TPA: LIM homeobox protein 2-like [Bos taurus]
Length = 406
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 110
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA++ VYHL CF C CN GD F + D+ + C +
Sbjct: 111 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHF 169
Query: 173 E 173
E
Sbjct: 170 E 170
>gi|301769255|ref|XP_002920044.1| PREDICTED: LIM/homeobox protein Lhx2-like isoform 1 [Ailuropoda
melanoleuca]
gi|345806102|ref|XP_863668.2| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Canis lupus
familiaris]
gi|281350174|gb|EFB25758.1| hypothetical protein PANDA_008723 [Ailuropoda melanoleuca]
Length = 406
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 110
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA++ VYHL CF C CN GD F + D+ + C +
Sbjct: 111 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHF 169
Query: 173 E 173
E
Sbjct: 170 E 170
>gi|344278994|ref|XP_003411276.1| PREDICTED: LIM/homeobox protein Lhx8 [Loxodonta africana]
Length = 346
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 70/130 (53%), Gaps = 3/130 (2%)
Query: 44 AGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLIL 103
G + G C SCG I +++LLK DL WH CL C C LG ++ Y K I
Sbjct: 55 GSGCASGKCVCNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIF 113
Query: 104 CKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD 163
CK DY R +GT C+ C + I + + V RAK NVYHL CFAC C + G+ F L +
Sbjct: 114 CKLDYFRRYGT--RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVE 171
Query: 164 NKILCEYDYE 173
K+LC Y+
Sbjct: 172 EKVLCRVHYD 181
>gi|301769257|ref|XP_002920045.1| PREDICTED: LIM/homeobox protein Lhx2-like isoform 2 [Ailuropoda
melanoleuca]
Length = 404
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 52 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 109
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA++ VYHL CF C CN GD F + D+ + C +
Sbjct: 110 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHF 168
Query: 173 E 173
E
Sbjct: 169 E 169
>gi|387763115|ref|NP_001248721.1| LIM/homeobox protein Lhx2 [Macaca mulatta]
gi|402896424|ref|XP_003911300.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Papio anubis]
gi|380818036|gb|AFE80892.1| LIM/homeobox protein Lhx2 [Macaca mulatta]
Length = 406
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 110
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA++ VYHL CF C CN GD F + D+ + C +
Sbjct: 111 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHF 169
Query: 173 E 173
E
Sbjct: 170 E 170
>gi|348570110|ref|XP_003470840.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 3 [Cavia porcellus]
Length = 404
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 52 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 109
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA++ VYHL CF C CN GD F + D+ + C +
Sbjct: 110 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHF 168
Query: 173 E 173
E
Sbjct: 169 E 169
>gi|30795196|ref|NP_004780.3| LIM/homeobox protein Lhx2 [Homo sapiens]
gi|297685314|ref|XP_002820237.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Pongo abelii]
gi|397473226|ref|XP_003808118.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Pan paniscus]
gi|426362988|ref|XP_004048630.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Gorilla gorilla
gorilla]
gi|8247936|sp|P50458.2|LHX2_HUMAN RecName: Full=LIM/homeobox protein Lhx2; Short=Homeobox protein
LH-2; Short=LIM homeobox protein 2
gi|62739692|gb|AAH93662.1| LIM homeobox 2 [Homo sapiens]
gi|85567249|gb|AAI12186.1| LIM homeobox protein 2 [Homo sapiens]
gi|119607982|gb|EAW87576.1| LIM homeobox 2, isoform CRA_a [Homo sapiens]
gi|167773563|gb|ABZ92216.1| LIM homeobox 2 [synthetic construct]
gi|261859194|dbj|BAI46119.1| LIM homeobox 2 [synthetic construct]
Length = 406
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 110
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA++ VYHL CF C CN GD F + D+ + C +
Sbjct: 111 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHF 169
Query: 173 E 173
E
Sbjct: 170 E 170
>gi|1708558|sp|P50212.1|ISL2B_ONCTS RecName: Full=Insulin gene enhancer protein ISL-2B; Short=Islet-2B
gi|64209|emb|CAA46102.1| isl-1 [Oncorhynchus tshawytscha]
gi|1094403|prf||2106150A LIM domain homeobox protein
Length = 340
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 73/125 (58%), Gaps = 4/125 (3%)
Query: 49 GGLKECASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 107
G+ C CG +I ++++L+ A DL WH CLKC C L E T + + CKRD
Sbjct: 4 SGIAMCVGCGSQIHDQYILRVAPDLEWHAACLKCSECSQYLDET-CTCFVRDGKTYCKRD 62
Query: 108 YLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKIL 167
Y+RLFG CA C + ++VMRA++NVYH+ECF C C+ + GD F L D ++L
Sbjct: 63 YVRLFGIK--CAKCNIGFCSSDLVMRARDNVYHMECFRCSVCSRQLVPGDEFSLRDEELL 120
Query: 168 CEYDY 172
C D+
Sbjct: 121 CRADH 125
>gi|403299862|ref|XP_003940693.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Saimiri boliviensis
boliviensis]
Length = 406
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 110
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA++ VYHL CF C CN GD F + D+ + C +
Sbjct: 111 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHF 169
Query: 173 E 173
E
Sbjct: 170 E 170
>gi|432095435|gb|ELK26634.1| LIM/homeobox protein Lhx2 [Myotis davidii]
Length = 389
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 36 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 93
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA++ VYHL CF C CN GD F + D+ + C +
Sbjct: 94 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHF 152
Query: 173 E 173
E
Sbjct: 153 E 153
>gi|4406518|gb|AAD20013.1| LIM-homeodomain protein HLHX2 [Homo sapiens]
Length = 389
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 36 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 93
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA++ VYHL CF C CN GD F + D+ + C +
Sbjct: 94 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHF 152
Query: 173 E 173
E
Sbjct: 153 E 153
>gi|444727546|gb|ELW68032.1| LIM/homeobox protein Lhx8 [Tupaia chinensis]
Length = 348
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 69/130 (53%), Gaps = 3/130 (2%)
Query: 44 AGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLIL 103
G G C SCG I +++LLK DL WH CL C C LG ++ Y K I
Sbjct: 57 GSGCPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIF 115
Query: 104 CKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD 163
CK DY R +GT C+ C + I + + V RAK NVYHL CFAC C + G+ F L +
Sbjct: 116 CKLDYFRRYGTR--CSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVE 173
Query: 164 NKILCEYDYE 173
K+LC Y+
Sbjct: 174 EKVLCRVHYD 183
>gi|296190791|ref|XP_002743350.1| PREDICTED: LIM/homeobox protein Lhx2 [Callithrix jacchus]
Length = 365
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 12 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 69
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA++ VYHL CF C CN GD F + D+ + C +
Sbjct: 70 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHF 128
Query: 173 E 173
E
Sbjct: 129 E 129
>gi|148237976|ref|NP_001079958.1| LIM homeobox 8 [Xenopus laevis]
gi|34784686|gb|AAH57730.1| MGC68912 protein [Xenopus laevis]
Length = 282
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 70/130 (53%), Gaps = 3/130 (2%)
Query: 44 AGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLIL 103
G + G C +CG I +++LLK DL WH CL C C LG ++ Y K I
Sbjct: 83 TAGLNQGKNVCNNCGMEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIY 141
Query: 104 CKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD 163
CK DY R +GT C+ C + I A + V RAK NVYHL CFAC C + G+ F L +
Sbjct: 142 CKLDYFRRYGTR--CSRCGRHIHATDWVRRAKGNVYHLACFACYSCKRQLSTGEEFALVE 199
Query: 164 NKILCEYDYE 173
K+LC Y+
Sbjct: 200 EKVLCRVHYD 209
>gi|338720274|ref|XP_001916843.2| PREDICTED: LIM/homeobox protein Lhx6-like [Equus caballus]
Length = 239
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 48 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 107
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 108 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 164
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 165 QLSTGEEFGLVEEKVLCRIHYD 186
>gi|328925130|dbj|BAK19080.1| apterous A splicing isoform type C [Bombyx mori]
Length = 385
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 72/122 (59%), Gaps = 4/122 (3%)
Query: 53 ECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRL 111
CA CG RIT+R+ L AL+ WH CL+C C+C++ + Y + + I CK DY+RL
Sbjct: 63 PCAGCGCRITDRYYLLALERRWHTPCLRC--CECKMPLDSEQRCYARDSNIFCKNDYIRL 120
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
+G CA C VI A E+VMRA++ V+H+ CF+C CN GD + + D + C
Sbjct: 121 YGPK-RCARCNTVISASELVMRARDLVFHVHCFSCALCNTPLNKGDTYGIRDAAVYCRLH 179
Query: 172 YE 173
YE
Sbjct: 180 YE 181
>gi|344243883|gb|EGV99986.1| LIM/homeobox protein Lhx2 [Cricetulus griseus]
Length = 385
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 36 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 93
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA++ VYHL CF C CN GD F + D+ + C +
Sbjct: 94 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHF 152
Query: 173 E 173
E
Sbjct: 153 E 153
>gi|114626624|ref|XP_528427.2| PREDICTED: LIM/homeobox protein Lhx2 [Pan troglodytes]
Length = 365
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 12 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 69
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA++ VYHL CF C CN GD F + D+ + C +
Sbjct: 70 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHF 128
Query: 173 E 173
E
Sbjct: 129 E 129
>gi|345806125|ref|XP_003435390.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Canis lupus
familiaris]
Length = 392
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/142 (40%), Positives = 72/142 (50%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G CASCG I +R LLK +L WH CL+C C L +
Sbjct: 77 STPSVCSPPSAASSVPSAGKNICASCGLEILDRDLLKVNNLIWHVRCLECSVCRTSLRQQ 136
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 137 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 193
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 194 QLSTGEEFGLVEEKVLCRIHYD 215
>gi|355745377|gb|EHH50002.1| hypothetical protein EGM_00758, partial [Macaca fascicularis]
Length = 320
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 69/130 (53%), Gaps = 3/130 (2%)
Query: 44 AGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLIL 103
G G C SCG I +++LLK DL WH CL C C LG ++ Y K I
Sbjct: 29 GSGCPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIF 87
Query: 104 CKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD 163
CK DY R +GT C+ C + I + + V RAK NVYHL CFAC C + G+ F L +
Sbjct: 88 CKLDYFRRYGTR--CSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVE 145
Query: 164 NKILCEYDYE 173
K+LC Y+
Sbjct: 146 EKVLCRVHYD 155
>gi|328925128|dbj|BAK19079.1| apterous A splicing isoform type B [Bombyx mori]
Length = 398
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 72/122 (59%), Gaps = 4/122 (3%)
Query: 53 ECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRL 111
CA CG RIT+R+ L AL+ WH CL+C C+C++ + Y + + I CK DY+RL
Sbjct: 63 PCAGCGCRITDRYYLLALERRWHTPCLRC--CECKMPLDSEQRCYARDSNIFCKNDYIRL 120
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
+G CA C VI A E+VMRA++ V+H+ CF+C CN GD + + D + C
Sbjct: 121 YGPK-RCARCNTVISASELVMRARDLVFHVHCFSCALCNTPLNKGDTYGIRDAAVYCRLH 179
Query: 172 YE 173
YE
Sbjct: 180 YE 181
>gi|328925116|dbj|BAK19073.1| apterous A splicing isoform type A [Bombyx mori]
Length = 376
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 72/122 (59%), Gaps = 4/122 (3%)
Query: 53 ECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRL 111
CA CG RIT+R+ L AL+ WH CL+C C+C++ + Y + + I CK DY+RL
Sbjct: 63 PCAGCGCRITDRYYLLALERRWHTPCLRC--CECKMPLDSEQRCYARDSNIFCKNDYIRL 120
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
+G CA C VI A E+VMRA++ V+H+ CF+C CN GD + + D + C
Sbjct: 121 YGPK-RCARCNTVISASELVMRARDLVFHVHCFSCALCNTPLNKGDTYGIRDAAVYCRLH 179
Query: 172 YE 173
YE
Sbjct: 180 YE 181
>gi|363740116|ref|XP_001234553.2| PREDICTED: LIM/homeobox protein Lhx5 [Gallus gallus]
Length = 402
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 68/120 (56%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C C L E + + + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRRFG 61
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C++ I ++V +A+N V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 62 TK--CAGCSQGISPSDLVRKARNKVFHLNCFTCMVCNKQLSTGEELYIIDENKFVCKEDY 119
>gi|344271943|ref|XP_003407796.1| PREDICTED: LIM/homeobox protein Lhx2 [Loxodonta africana]
Length = 365
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 12 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 69
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA++ VYHL CF C CN GD F + D+ + C +
Sbjct: 70 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHF 128
Query: 173 E 173
E
Sbjct: 129 E 129
>gi|114626799|ref|XP_001141606.1| PREDICTED: LIM homeobox transcription factor 1-beta [Pan
troglodytes]
Length = 623
Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 48/134 (35%), Positives = 76/134 (56%), Gaps = 6/134 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C C + I++RFL++ + WHE+CL+C C L ++ Y + + CK+DY +LF
Sbjct: 277 CEGCQRPISDRFLMRVNESSWHEECLQCAACQQALT---TSCYFRDRKLYCKQDYQQLFA 333
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
C+ C + I E VMRA VYHL CF C C + GD F L + ++LC+ DYE
Sbjct: 334 AK--CSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYE 391
Query: 174 -ERQVFANIAYNPS 186
E+ + ++++ + S
Sbjct: 392 KEKDLLSSVSPDES 405
>gi|4530371|gb|AAD22008.1| LIM homeobox protein 9 [Mus musculus]
Length = 378
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 77/145 (53%), Gaps = 12/145 (8%)
Query: 38 VTQGALAGGASGGLKE--------CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG 89
+T+G G G+ CA CG +I++R+ L A+D WH CLKC C+C+L
Sbjct: 28 LTKGTQLNGRDTGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLA 85
Query: 90 -EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 148
E T + K I CK DY R F + CA C I A EMVMRA+++VYHL CF C
Sbjct: 86 LESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCFT 144
Query: 149 CNHRFCVGDRFYLCDNKILCEYDYE 173
CN GD F + D+ + C +E
Sbjct: 145 CNKTLTTGDHFGMKDSLVYCRAHFE 169
>gi|328708425|ref|XP_001944208.2| PREDICTED: LIM/homeobox protein Lhx3-like [Acyrthosiphon pisum]
Length = 375
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 71/126 (56%), Gaps = 6/126 (4%)
Query: 49 GGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDY 108
+ +C C + I +RF+LK L+ WH CLKC C L + + + ++ CK D+
Sbjct: 40 ASIPKCGGCQELILDRFILKVLERTWHARCLKCNECGATLAD---KCFARNGMLFCKDDF 96
Query: 109 LRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKIL 167
+ +GT CA C IP ++V RA++ VYHL+CFAC C GD FYL D K++
Sbjct: 97 FKRYGTK--CAGCDLGIPPTQIVRRAQDLVYHLQCFACVMCGRTLNTGDEFYLMEDRKLV 154
Query: 168 CEYDYE 173
C+ DYE
Sbjct: 155 CKPDYE 160
>gi|123299964|dbj|BAF45328.1| LIM homeobox protein 2 [Sus scrofa]
Length = 373
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 110
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA++ VYHL CF C CN GD F + D+ + C +
Sbjct: 111 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHF 169
Query: 173 E 173
E
Sbjct: 170 E 170
>gi|18858909|ref|NP_571039.1| insulin gene enhancer protein isl-2b [Danio rerio]
gi|1708564|sp|P53407.1|ISL2B_DANRE RecName: Full=Insulin gene enhancer protein isl-2b; Short=Islet-2B;
AltName: Full=Insulin gene enhancer protein isl-3;
Short=Islet-3
gi|1037168|dbj|BAA07485.1| zfIsl-3 [Danio rerio]
gi|55962547|emb|CAI11499.1| islet 3 [Danio rerio]
gi|63100507|gb|AAH95011.1| Islet2b [Danio rerio]
Length = 358
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 81/145 (55%), Gaps = 4/145 (2%)
Query: 29 VDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCR 87
VD+ +S + GL C CG +I ++++L+ + DL WH CLKC C+
Sbjct: 2 VDIIFSSSFLDDMGDHSKKKSGLAMCVGCGSQIHDQYILRVSPDLEWHAACLKCVECNQY 61
Query: 88 LGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQ 147
L E T + + CKRDY+RLFG CA CT + ++VMRA+++VYH+ECF C
Sbjct: 62 LDET-CTCFVRDGKTYCKRDYVRLFGIK--CAKCTLGFSSSDLVMRARDSVYHIECFRCS 118
Query: 148 QCNHRFCVGDRFYLCDNKILCEYDY 172
C+ + GD F + D ++LC D+
Sbjct: 119 VCSRQLLPGDEFSVRDEELLCRADH 143
>gi|261490776|ref|NP_001159787.1| LIM/homeobox protein Lhx8 [Sus scrofa]
gi|238683613|gb|ACR54090.1| LIM homeobox 8 [Sus scrofa]
Length = 295
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 67/120 (55%), Gaps = 3/120 (2%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C SCG I +++LLK DL WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 14 CNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 72
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
T C+ C + I + + V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 73 TR--CSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 130
>gi|117645548|emb|CAL38240.1| hypothetical protein [synthetic construct]
Length = 363
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 72/142 (50%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 48 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 107
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CF C C
Sbjct: 108 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFTCFSCKR 164
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 165 QLSTGEEFGLVEEKVLCRIHYD 186
>gi|51494804|gb|AAH40321.1| LIM homeobox 8 [Homo sapiens]
gi|312150920|gb|ADQ31972.1| LIM homeobox 8 [synthetic construct]
Length = 356
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 67/120 (55%), Gaps = 3/120 (2%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C SCG I +++LLK DL WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 75 CNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 133
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
T C+ C + I + + V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 134 T--RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 191
>gi|332222205|ref|XP_003260257.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 1 [Nomascus
leucogenys]
Length = 356
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 67/120 (55%), Gaps = 3/120 (2%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C SCG I +++LLK DL WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 75 CNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 133
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
T C+ C + I + + V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 134 T--RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 191
>gi|297278964|ref|XP_001097664.2| PREDICTED: LIM/homeobox protein Lhx8-like [Macaca mulatta]
gi|402854981|ref|XP_003892128.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 1 [Papio anubis]
Length = 356
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 67/120 (55%), Gaps = 3/120 (2%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C SCG I +++LLK DL WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 75 CNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 133
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
T C+ C + I + + V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 134 T--RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 191
>gi|328925120|dbj|BAK19075.1| Bmptp-Z and Bmap-A fusion protein beta [Bombyx mori]
Length = 444
Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 72/122 (59%), Gaps = 4/122 (3%)
Query: 53 ECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRL 111
CA CG RIT+R+ L AL+ WH CL+C C+C++ + Y + + I CK DY+RL
Sbjct: 131 PCAGCGCRITDRYYLLALERRWHTPCLRC--CECKMPLDSEQRCYARDSNIFCKNDYIRL 188
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
+G CA C VI A E+VMRA++ V+H+ CF+C CN GD + + D + C
Sbjct: 189 YGPK-RCARCNTVISASELVMRARDLVFHVHCFSCALCNTPLNKGDTYGIRDAAVYCRLH 247
Query: 172 YE 173
YE
Sbjct: 248 YE 249
>gi|122934839|gb|ABM68157.1| LHX6 [Lagothrix lagotricha]
Length = 198
Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 48 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 107
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 108 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 164
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 165 QLSTGEEFGLVEEKVLCRIHYD 186
>gi|410967547|ref|XP_003990280.1| PREDICTED: LIM/homeobox protein Lhx8 [Felis catus]
Length = 346
Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 67/120 (55%), Gaps = 3/120 (2%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C SCG I +++LLK DL WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 65 CNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 123
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
T C+ C + I + + V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 124 T--RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 181
>gi|50083287|ref|NP_001001933.1| LIM/homeobox protein Lhx8 isoform 1 [Homo sapiens]
gi|114557210|ref|XP_524738.2| PREDICTED: LIM/homeobox protein Lhx8 isoform 2 [Pan troglodytes]
gi|297664648|ref|XP_002810744.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 1 [Pongo abelii]
gi|397521070|ref|XP_003830626.1| PREDICTED: LIM/homeobox protein Lhx8 [Pan paniscus]
gi|426330048|ref|XP_004026038.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 1 [Gorilla gorilla
gorilla]
gi|296434566|sp|Q68G74.2|LHX8_HUMAN RecName: Full=LIM/homeobox protein Lhx8; Short=LIM homeobox protein
8
Length = 356
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 67/120 (55%), Gaps = 3/120 (2%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C SCG I +++LLK DL WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 75 CNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 133
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
T C+ C + I + + V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 134 T--RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 191
>gi|368711326|ref|NP_001243043.1| LIM/homeobox protein Lhx8 isoform 2 [Homo sapiens]
gi|395730366|ref|XP_003775714.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 2 [Pongo abelii]
gi|410033125|ref|XP_003949492.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 1 [Pan troglodytes]
gi|426330050|ref|XP_004026039.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 2 [Gorilla gorilla
gorilla]
gi|441637563|ref|XP_004090066.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 2 [Nomascus
leucogenys]
Length = 346
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 67/120 (55%), Gaps = 3/120 (2%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C SCG I +++LLK DL WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 65 CNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 123
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
T C+ C + I + + V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 124 T--RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 181
>gi|443696308|gb|ELT97041.1| hypothetical protein CAPTEDRAFT_43751, partial [Capitella teleta]
Length = 271
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 70/120 (58%), Gaps = 2/120 (1%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA CG++IT+R+ L+A++ WH +CL+C C L + T Y + I CK DY RLF
Sbjct: 2 CAGCGEKITDRYYLQAVERAWHANCLRCAQCKLPL-DSEVTCYARDGSIFCKEDYYRLFA 60
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
C+ C I A E+VM+A+++VYH+ CF C C+ G+ F + +N I C YE
Sbjct: 61 IK-RCSGCHLAISANELVMKARDSVYHMNCFTCASCHKLLITGEHFGMKENLIYCRMHYE 119
>gi|390466088|ref|XP_002751019.2| PREDICTED: LIM/homeobox protein Lhx8 [Callithrix jacchus]
Length = 346
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 67/120 (55%), Gaps = 3/120 (2%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C SCG I +++LLK DL WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 65 CNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 123
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
T C+ C + I + + V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 124 T--RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 181
>gi|124111083|gb|ABM91915.1| LHX6 [Pan troglodytes]
Length = 198
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 48 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 107
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 108 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 164
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 165 QLSTGEEFGLVEEKVLCRIHYD 186
>gi|402854983|ref|XP_003892129.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 2 [Papio anubis]
Length = 346
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 67/120 (55%), Gaps = 3/120 (2%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C SCG I +++LLK DL WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 65 CNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 123
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
T C+ C + I + + V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 124 T--RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 181
>gi|74213688|dbj|BAE35644.1| unnamed protein product [Mus musculus]
Length = 367
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 68/120 (56%), Gaps = 3/120 (2%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C+SCG I +++LLK DL WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 96 CSSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 154
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
T C+ C + I + + V RAK NVYHL CFAC C + G+ F L + K+LC ++
Sbjct: 155 TR--CSRCGRHIHSIDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHFD 212
>gi|121483796|gb|ABM54189.1| LHX6 [Pan paniscus]
gi|124054101|gb|ABM89234.1| LHX6 [Pongo pygmaeus]
Length = 198
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 48 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 107
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 108 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 164
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 165 QLSTGEEFGLVEEKVLCRIHYD 186
>gi|395821904|ref|XP_003784270.1| PREDICTED: LIM/homeobox protein Lhx8 [Otolemur garnettii]
Length = 346
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 67/120 (55%), Gaps = 3/120 (2%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C SCG I +++LLK DL WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 65 CNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 123
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
T C+ C + I + + V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 124 T--RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 181
>gi|328925118|dbj|BAK19074.1| Bmptp-Z and Bmap-A fusion protein alpha [Bombyx mori]
Length = 466
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 72/122 (59%), Gaps = 4/122 (3%)
Query: 53 ECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRL 111
CA CG RIT+R+ L AL+ WH CL+C C+C++ + Y + + I CK DY+RL
Sbjct: 131 PCAGCGCRITDRYYLLALERRWHTPCLRC--CECKMPLDSEQRCYARDSNIFCKNDYIRL 188
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
+G CA C VI A E+VMRA++ V+H+ CF+C CN GD + + D + C
Sbjct: 189 YGPK-RCARCNTVISASELVMRARDLVFHVHCFSCALCNTPLNKGDTYGIRDAAVYCRLH 247
Query: 172 YE 173
YE
Sbjct: 248 YE 249
>gi|395501088|ref|XP_003754930.1| PREDICTED: insulin gene enhancer protein ISL-2 [Sarcophilus
harrisii]
Length = 335
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 82/147 (55%), Gaps = 5/147 (3%)
Query: 54 CASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLF 112
C CG +I ++++LK + DL WH CLKC C L E T + + CKRDY+RLF
Sbjct: 2 CVGCGTQIHDQYILKVSPDLEWHAACLKCAECSQYLDET-CTCFVRNGKTYCKRDYIRLF 60
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
G CA C + ++VMRA+ NVYH+ECF C C+ + GD F L ++++LC D+
Sbjct: 61 GIK--CAKCKVGFSSSDLVMRARENVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADH 118
Query: 173 EERQVFANIAYNPSSLAHLRRQVTLQV 199
A+ A +P S HL +L +
Sbjct: 119 SLLLDRAS-AESPRSPGHLASSRSLHL 144
>gi|281354377|gb|EFB29961.1| hypothetical protein PANDA_005098 [Ailuropoda melanoleuca]
Length = 351
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 67/120 (55%), Gaps = 3/120 (2%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C SCG I +++LLK DL WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 70 CNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 128
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
T C+ C + I + + V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 129 T--RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 186
>gi|2285798|dbj|BAA21649.1| LIM-homeodomain protein [Mus musculus]
Length = 426
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 68/120 (56%), Gaps = 3/120 (2%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C+SCG I +++LLK DL WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 155 CSSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 213
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
T C+ C + I + + V RAK NVYHL CFAC C + G+ F L + K+LC ++
Sbjct: 214 TR--CSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHFD 271
>gi|410923575|ref|XP_003975257.1| PREDICTED: LIM/homeobox protein Lhx6-like [Takifugu rubripes]
Length = 310
Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 76/151 (50%), Gaps = 3/151 (1%)
Query: 23 LATHYQVDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCG 82
+ + +V S ++ A +CASCG I +R+LLK +L WH CL+C
Sbjct: 1 MESKLEVKKEAGESPPSEAACLCSPPPAKNQCASCGMEIQDRYLLKVNNLNWHLGCLECS 60
Query: 83 CCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLE 142
C L + S Y K I CK DY FGT CA C + + A + V RA+ +VYHL
Sbjct: 61 VCRASLRQHNSC-YVKNKEIFCKLDYFSRFGTK--CAQCGRQVYASDWVRRARGSVYHLA 117
Query: 143 CFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
CFAC C + G+ F L + ++LC Y+
Sbjct: 118 CFACFSCKRQLSTGEEFGLVEGRVLCRSHYD 148
>gi|291398678|ref|XP_002715959.1| PREDICTED: LIM homeobox 8 [Oryctolagus cuniculus]
Length = 371
Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 69/130 (53%), Gaps = 3/130 (2%)
Query: 44 AGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLIL 103
G G C SCG I +++LLK DL WH CL C C LG ++ Y K I
Sbjct: 86 GSGCPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIF 144
Query: 104 CKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD 163
CK DY R +GT C+ C + I + + V RAK NVYHL CFAC C + G+ F L +
Sbjct: 145 CKLDYFRRYGTR--CSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVE 202
Query: 164 NKILCEYDYE 173
K+LC Y+
Sbjct: 203 EKVLCRVHYD 212
>gi|154147696|ref|NP_001093698.1| LIM homeobox 1 [Xenopus (Silurana) tropicalis]
gi|138519843|gb|AAI35732.1| lhx1 protein [Xenopus (Silurana) tropicalis]
Length = 409
Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 67/120 (55%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C C L E + + + CK D+ R FG
Sbjct: 4 CAGCERPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRRFG 60
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C + I ++V RA++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 61 TK--CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
>gi|348500124|ref|XP_003437623.1| PREDICTED: insulin gene enhancer protein ISL-3-like [Oreochromis
niloticus]
Length = 360
Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 89/175 (50%), Gaps = 11/175 (6%)
Query: 29 VDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCR 87
VD+ +S + G C CG +I ++++L+ + DL WH CLKC C
Sbjct: 2 VDIIFSSSFLGDMGDHSKKKPGFAMCVGCGSQIHDQYILRVSPDLEWHAACLKCAECSQY 61
Query: 88 LGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQ 147
L E T + + CKRDY+RLFG CA C + ++VMRA++NVYH+ECF C
Sbjct: 62 LDET-CTCFVRDGKTYCKRDYVRLFGIK--CAKCNLGFSSSDLVMRARDNVYHIECFRCS 118
Query: 148 QCNHRFCVGDRFYLCDNKILCEYDYE---ERQVFANIAYNPSSLAHLRRQVTLQV 199
C+ + GD F L + ++LC D+ ER + A +P S H+ L +
Sbjct: 119 VCSRQLLPGDEFSLREEELLCRADHSLLLER----SSAGSPVSPGHIHSNRPLHL 169
>gi|390458375|ref|XP_002743346.2| PREDICTED: LIM homeobox transcription factor 1-beta [Callithrix
jacchus]
Length = 638
Score = 96.7 bits (239), Expect = 5e-18, Method: Composition-based stats.
Identities = 48/134 (35%), Positives = 76/134 (56%), Gaps = 6/134 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C C + I++RFL++ + WHE+CL+C C L ++ Y + + CK+DY +LF
Sbjct: 292 CEGCQRPISDRFLMRVNESSWHEECLQCAACQQALT---TSCYFRDRKLYCKQDYQQLFA 348
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
C+ C + I E VMRA VYHL CF C C + GD F L + ++LC+ DYE
Sbjct: 349 AK--CSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYE 406
Query: 174 -ERQVFANIAYNPS 186
E+ + ++++ + S
Sbjct: 407 KEKDLLSSVSPDES 420
>gi|148225925|ref|NP_001084128.1| LIM/homeobox protein Lhx1 [Xenopus laevis]
gi|267419|sp|P29674.1|LHX1_XENLA RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
1; AltName: Full=Homeobox protein Lim-1; Short=Xlim1;
Short=x-Lhx1; Short=xLIM-1
gi|64830|emb|CAA45353.1| homeobox protein [Xenopus laevis]
gi|213623130|gb|AAI69338.1| Homeobox protein [Xenopus laevis]
gi|213623134|gb|AAI69340.1| Homeobox protein [Xenopus laevis]
Length = 403
Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 67/120 (55%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C C L E + + + CK D+ R FG
Sbjct: 4 CAGCERPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRRFG 60
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C + I ++V RA++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 61 TK--CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
>gi|18858907|ref|NP_571045.1| insulin gene enhancer protein isl-2a [Danio rerio]
gi|1708561|sp|P53406.1|ISL2A_DANRE RecName: Full=Insulin gene enhancer protein isl-2a; Short=Islet-2A;
AltName: Full=Insulin gene enhancer protein isl-2;
Short=Islet-2
gi|871001|emb|CAA61283.1| Islet-2 protein [Danio rerio]
gi|1037166|dbj|BAA07484.1| zfIsl-2 [Danio rerio]
gi|190336908|gb|AAI62631.1| Islet2a [Danio rerio]
gi|190339440|gb|AAI62833.1| Islet2a [Danio rerio]
Length = 359
Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 77/145 (53%), Gaps = 4/145 (2%)
Query: 29 VDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCR 87
VD+ S + G+ C CG +I ++++L+ + DL WH CLKC C
Sbjct: 2 VDILPHPSFLGDMGDHSKKKSGIAMCVGCGSQIHDQYILRVSPDLEWHAACLKCAECSQY 61
Query: 88 LGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQ 147
L E T + + CKRDY+RLFG CA C + ++VMRA++NVYH+ECF C
Sbjct: 62 LDET-CTCFVRDGKTYCKRDYVRLFGIK--CAKCNIGFCSSDLVMRARDNVYHMECFRCS 118
Query: 148 QCNHRFCVGDRFYLCDNKILCEYDY 172
C+ GD F L D ++LC D+
Sbjct: 119 VCSRHLLPGDEFSLRDEELLCRADH 143
>gi|301623765|ref|XP_002941184.1| PREDICTED: LIM/homeobox protein Lhx6-like [Xenopus (Silurana)
tropicalis]
Length = 389
Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 67/124 (54%), Gaps = 3/124 (2%)
Query: 50 GLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYL 109
G C+SCG I +R+LLK +L WH CL+C C L + S Y K I CK DY
Sbjct: 92 GKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQHNS-CYIKNKEIFCKMDYF 150
Query: 110 RLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCE 169
FGT CA C + I A + V RA+ N YHL CFAC C + G+ F L + K+LC
Sbjct: 151 SRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACYSCKRQLSTGEEFGLVEEKVLCR 208
Query: 170 YDYE 173
Y+
Sbjct: 209 IHYD 212
>gi|449478466|ref|XP_002188127.2| PREDICTED: LIM/homeobox protein Lhx6 [Taeniopygia guttata]
Length = 421
Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 67/125 (53%), Gaps = 3/125 (2%)
Query: 49 GGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDY 108
G C+SCG I +R+LLK +L WH CL+C C L + S Y K I CK DY
Sbjct: 123 AGKNVCSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQHS-CYIKNKEIFCKMDY 181
Query: 109 LRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILC 168
FGT CA C + I A + V RA+ N YHL CFAC C + G+ F L + K+LC
Sbjct: 182 FSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLC 239
Query: 169 EYDYE 173
Y+
Sbjct: 240 RIHYD 244
>gi|348535176|ref|XP_003455077.1| PREDICTED: LIM/homeobox protein Lhx2-like [Oreochromis niloticus]
Length = 417
Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG++I +R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 74 CAGCGRKIADRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 131
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA++ VYHL CF C C+ GD F + D+ + C +
Sbjct: 132 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCSKMLTTGDHFGMKDSLVYCRLHF 190
Query: 173 E 173
E
Sbjct: 191 E 191
>gi|156364672|ref|XP_001626470.1| predicted protein [Nematostella vectensis]
gi|156213347|gb|EDO34370.1| predicted protein [Nematostella vectensis]
Length = 304
Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
+ C C +I +R+L+K WH CLKC C LG +T Y K I CK DY R
Sbjct: 26 ERCVGCEAKIVDRYLVKVSGRAWHTKCLKCCLCSDELGRE-ATCYTKDGKIYCKADYARQ 84
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
FGT CA C + I A + V RAKN VYHL CFAC C + G+ F L D +LC+
Sbjct: 85 FGTK--CARCGRSIHANDWVRRAKNCVYHLACFACDNCKRQLSTGEEFALKDGHVLCKLH 142
Query: 172 YEE 174
Y E
Sbjct: 143 YLE 145
>gi|345329744|ref|XP_001512364.2| PREDICTED: LIM/homeobox protein Lhx6 [Ornithorhynchus anatinus]
Length = 364
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 67/120 (55%), Gaps = 3/120 (2%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C+SCG I +R+LLK +L WH CL+C C L + S+ Y K I CK DY FG
Sbjct: 71 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQ-QSSCYIKNKEIFCKVDYFSRFG 129
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
T CA C + I A + V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 130 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 187
>gi|410929509|ref|XP_003978142.1| PREDICTED: LIM/homeobox protein Lhx2-like [Takifugu rubripes]
Length = 417
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG++I +R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 74 CAGCGRKIVDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 131
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA++ VYHL CF C C+ GD F + D+ + C +
Sbjct: 132 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCSKMLTTGDHFGMKDSLVYCRLHF 190
Query: 173 E 173
E
Sbjct: 191 E 191
>gi|225708026|gb|ACO09859.1| LIM/homeobox protein Lhx9 [Osmerus mordax]
Length = 317
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 69/121 (57%), Gaps = 5/121 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R
Sbjct: 71 CAGCGGKISDRYYLLAVDKRWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRF- 127
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA+++VYHL CF C CN GD F + D+ + C +
Sbjct: 128 -SVQRCARCHLGISASEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFGMKDSLVYCRVHF 186
Query: 173 E 173
E
Sbjct: 187 E 187
>gi|301776020|ref|XP_002923422.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx1-like
[Ailuropoda melanoleuca]
Length = 405
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 67/120 (55%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C C L E + + + CK D+ R FG
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFG 60
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C + I ++V RA++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 61 TK--CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
>gi|431890885|gb|ELK01764.1| LIM/homeobox protein Lhx1 [Pteropus alecto]
Length = 406
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 67/120 (55%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C C L E + + + CK D+ R FG
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFG 60
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C + I ++V RA++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 61 TK--CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
>gi|58866006|ref|NP_001012219.1| LIM/homeobox protein Lhx8 [Rattus norvegicus]
gi|58476609|gb|AAH90011.1| LIM homeobox 8 [Rattus norvegicus]
Length = 336
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 68/120 (56%), Gaps = 3/120 (2%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C+SCG I +++LLK DL WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 65 CSSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 123
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
T C+ C + I + + V RAK NVYHL CFAC C + G+ F L + K+LC ++
Sbjct: 124 TR--CSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHFD 181
>gi|508712|gb|AAB08752.1| LIM-homeobox domain protein [Homo sapiens]
Length = 423
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 68/121 (56%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
C CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 52 CGGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 109
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA++ VYHL CF C CN GD F + D+ + C +
Sbjct: 110 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHF 168
Query: 173 E 173
E
Sbjct: 169 E 169
>gi|30410785|ref|NP_005559.2| LIM/homeobox protein Lhx1 [Homo sapiens]
gi|60416412|sp|P48742.2|LHX1_HUMAN RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
1; AltName: Full=Homeobox protein Lim-1; Short=hLim-1
gi|75517203|gb|AAI01675.1| LIM homeobox 1 [Homo sapiens]
gi|85565997|gb|AAI11937.1| LIM homeobox 1 [Homo sapiens]
gi|119577978|gb|EAW57574.1| LIM homeobox 1 [Homo sapiens]
gi|167773161|gb|ABZ92015.1| LIM homeobox 1 [synthetic construct]
gi|208966670|dbj|BAG73349.1| LIM homeobox 1 [synthetic construct]
Length = 406
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 67/120 (55%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C C L E + + + CK D+ R FG
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFG 60
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C + I ++V RA++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 61 TK--CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
>gi|395845905|ref|XP_003795658.1| PREDICTED: LIM/homeobox protein Lhx1 [Otolemur garnettii]
Length = 407
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 67/120 (55%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C C L E + + + CK D+ R FG
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFG 60
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C + I ++V RA++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 61 TK--CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
>gi|296201935|ref|XP_002748333.1| PREDICTED: LIM/homeobox protein Lhx1 [Callithrix jacchus]
Length = 406
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 67/120 (55%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C C L E + + + CK D+ R FG
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFG 60
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C + I ++V RA++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 61 TK--CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
>gi|395505631|ref|XP_003757143.1| PREDICTED: LIM/homeobox protein Lhx6 [Sarcophilus harrisii]
Length = 363
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 67/124 (54%), Gaps = 3/124 (2%)
Query: 50 GLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYL 109
G C+SCG I +R+LLK +L WH CL+C C L + S Y K I CK DY
Sbjct: 66 GKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYF 124
Query: 110 RLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCE 169
FGT CA C + I A + V RA+ N YHL CFAC C + G+ F L + K+LC
Sbjct: 125 SRFGTK--CARCGRQIFASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCR 182
Query: 170 YDYE 173
Y+
Sbjct: 183 IHYD 186
>gi|334311482|ref|XP_001364897.2| PREDICTED: LIM/homeobox protein Lhx6 [Monodelphis domestica]
Length = 391
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 67/124 (54%), Gaps = 3/124 (2%)
Query: 50 GLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYL 109
G C+SCG I +R+LLK +L WH CL+C C L + S Y K I CK DY
Sbjct: 94 GKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYF 152
Query: 110 RLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCE 169
FGT CA C + I A + V RA+ N YHL CFAC C + G+ F L + K+LC
Sbjct: 153 SRFGTK--CARCGRQIFASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCR 210
Query: 170 YDYE 173
Y+
Sbjct: 211 IHYD 214
>gi|149026292|gb|EDL82535.1| rCG29002 [Rattus norvegicus]
Length = 367
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 68/120 (56%), Gaps = 3/120 (2%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C+SCG I +++LLK DL WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 96 CSSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 154
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
T C+ C + I + + V RAK NVYHL CFAC C + G+ F L + K+LC ++
Sbjct: 155 TR--CSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHFD 212
>gi|76573889|ref|NP_001029088.1| LIM/homeobox protein Lhx1 [Pan troglodytes]
gi|297700651|ref|XP_002827352.1| PREDICTED: LIM/homeobox protein Lhx1 [Pongo abelii]
gi|311267821|ref|XP_003131754.1| PREDICTED: LIM/homeobox protein Lhx1-like [Sus scrofa]
gi|348567695|ref|XP_003469634.1| PREDICTED: LIM/homeobox protein Lhx1-like [Cavia porcellus]
gi|359320451|ref|XP_003639347.1| PREDICTED: LIM/homeobox protein Lhx1-like [Canis lupus familiaris]
gi|397494263|ref|XP_003818003.1| PREDICTED: LIM/homeobox protein Lhx1 [Pan paniscus]
gi|402899902|ref|XP_003912923.1| PREDICTED: LIM/homeobox protein Lhx1 [Papio anubis]
gi|403274736|ref|XP_003929119.1| PREDICTED: LIM/homeobox protein Lhx1 [Saimiri boliviensis
boliviensis]
gi|410980542|ref|XP_003996636.1| PREDICTED: LIM/homeobox protein Lhx1 [Felis catus]
gi|426348609|ref|XP_004041924.1| PREDICTED: LIM/homeobox protein Lhx1 [Gorilla gorilla gorilla]
gi|60389888|sp|Q5IS44.1|LHX1_PANTR RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
1; AltName: Full=Homeobox protein Lim-1
gi|60389889|sp|Q5IS89.1|LHX1_SAIBB RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
1; AltName: Full=Homeobox protein Lim-1
gi|56122252|gb|AAV74277.1| LIM homeobox protein 1 [Saimiri boliviensis]
gi|56122342|gb|AAV74322.1| LIM homeobox protein 1 [Pan troglodytes]
gi|355568607|gb|EHH24888.1| LIM/homeobox protein Lhx1 [Macaca mulatta]
gi|444720995|gb|ELW61755.1| LIM/homeobox protein Lhx1 [Tupaia chinensis]
Length = 406
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 67/120 (55%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C C L E + + + CK D+ R FG
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFG 60
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C + I ++V RA++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 61 TK--CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
>gi|113195680|ref|NP_034843.2| LIM/homeobox protein Lhx8 [Mus musculus]
gi|341941136|sp|O35652.4|LHX8_MOUSE RecName: Full=LIM/homeobox protein Lhx8; Short=LIM homeobox protein
8; AltName: Full=L3; AltName: Full=LIM/homeobox protein
Lhx7; Short=LIM homeobox protein 7
gi|3172042|dbj|BAA28628.1| LIM-homeodomain protein [Mus musculus]
gi|74227158|dbj|BAE38359.1| unnamed protein product [Mus musculus]
gi|116138618|gb|AAI25284.1| LIM homeobox protein 8 [Mus musculus]
gi|116138795|gb|AAI25282.1| LIM homeobox protein 8 [Mus musculus]
gi|148679947|gb|EDL11894.1| LIM homeobox protein 8, isoform CRA_b [Mus musculus]
gi|219519204|gb|AAI44769.1| LIM homeobox protein 8 [Mus musculus]
gi|1587483|prf||2206477A LIM homeo domain transcription factor
Length = 367
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 68/120 (56%), Gaps = 3/120 (2%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C+SCG I +++LLK DL WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 96 CSSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 154
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
T C+ C + I + + V RAK NVYHL CFAC C + G+ F L + K+LC ++
Sbjct: 155 TR--CSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHFD 212
>gi|344285733|ref|XP_003414614.1| PREDICTED: LIM/homeobox protein Lhx1-like [Loxodonta africana]
Length = 406
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 67/120 (55%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C C L E + + + CK D+ R FG
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFG 60
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C + I ++V RA++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 61 TK--CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
>gi|55846812|gb|AAV67410.1| LIM homeobox protein 1 [Macaca fascicularis]
Length = 403
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 67/120 (55%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C C L E + + + CK D+ R FG
Sbjct: 1 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFG 57
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C + I ++V RA++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 58 TK--CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 115
>gi|332258740|ref|XP_003278453.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx1 [Nomascus
leucogenys]
Length = 374
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 67/120 (55%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C C L E + + + CK D+ R FG
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFG 60
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C + I ++V RA++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 61 TK--CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
>gi|157428018|ref|NP_001098917.1| LIM/homeobox protein Lhx1 [Bos taurus]
gi|358417202|ref|XP_003583582.1| PREDICTED: LIM/homeobox protein Lhx1-like [Bos taurus]
gi|157279406|gb|AAI53213.1| LHX1 protein [Bos taurus]
gi|296477035|tpg|DAA19150.1| TPA: LIM homeobox protein 1 [Bos taurus]
gi|440905066|gb|ELR55504.1| LIM/homeobox protein Lhx1 [Bos grunniens mutus]
Length = 406
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 67/120 (55%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C C L E + + + CK D+ R FG
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFG 60
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C + I ++V RA++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 61 TK--CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
>gi|395531962|ref|XP_003768042.1| PREDICTED: LIM/homeobox protein Lhx1 [Sarcophilus harrisii]
Length = 406
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 67/120 (55%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C C L E + + + CK D+ R FG
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFG 60
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C + I ++V RA++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 61 TK--CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
>gi|6678688|ref|NP_032524.1| LIM/homeobox protein Lhx1 [Mus musculus]
gi|94400804|ref|NP_665887.3| LIM/homeobox protein Lhx1 [Rattus norvegicus]
gi|354477124|ref|XP_003500772.1| PREDICTED: LIM/homeobox protein Lhx1-like [Cricetulus griseus]
gi|51702761|sp|P63007.1|LHX1_RAT RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
1; AltName: Full=Homeobox protein Lim-1; Short=Rlim
gi|51702763|sp|P63006.1|LHX1_MOUSE RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
1; AltName: Full=Homeobox protein Lim-1
gi|51702764|sp|P63008.1|LHX1_MESAU RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
1; AltName: Full=Homeobox protein LMX-2; AltName:
Full=Homeobox protein Lim-1
gi|2144068|pir||I58187 homeotic protein lim-1 - rat
gi|425217|emb|CAA81797.1| lim1 [Mus musculus]
gi|559636|gb|AAC60696.1| transcription factor [Rattus sp.]
gi|587463|emb|CAA57164.1| lmx2 [Mesocricetus auratus]
gi|4104801|gb|AAD02169.1| homeobox protein Lim1 [Mus musculus]
gi|62201098|gb|AAH92374.1| Lhx1 protein [Mus musculus]
gi|148683791|gb|EDL15738.1| LIM homeobox protein 1 [Mus musculus]
gi|149053699|gb|EDM05516.1| LIM homeobox protein 1 [Rattus norvegicus]
Length = 406
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 67/120 (55%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C C L E + + + CK D+ R FG
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFG 60
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C + I ++V RA++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 61 TK--CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
>gi|158296021|ref|XP_316578.4| AGAP006540-PA [Anopheles gambiae str. PEST]
gi|157016312|gb|EAA11207.4| AGAP006540-PA [Anopheles gambiae str. PEST]
Length = 334
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 78/137 (56%), Gaps = 5/137 (3%)
Query: 40 QGALAGG--ASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQ 97
+G+L+G A L+ C +CG+ I+++FLL WH CL+C C L S +
Sbjct: 7 KGSLSGQCQAPKELRSCTACGEPISDQFLLDVGGCSWHSACLRCCICHTPLDHQPS-CFL 65
Query: 98 KANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGD 157
+ I CK DY + FGT CA C++ I A + V RA++ ++HL CFAC C + G+
Sbjct: 66 RERQIYCKTDYTKRFGTK--CARCSRTISATDWVRRARDLIFHLACFACDSCGRQLSTGE 123
Query: 158 RFYLCDNKILCEYDYEE 174
+F L D+K+LC+ Y E
Sbjct: 124 QFALVDDKVLCKTHYSE 140
>gi|351696664|gb|EHA99582.1| LIM/homeobox protein Lhx1 [Heterocephalus glaber]
Length = 406
Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 67/120 (55%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C C L E + + + CK D+ R FG
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFG 60
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C + I ++V RA++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 61 TK--CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
>gi|124013499|gb|ABM87992.1| LHX6 [Macaca nemestrina]
Length = 198
Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 48 STPSVCSPPSAASSVPSAGKNICSSCGLXILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 107
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 108 NS-CYIKNKEIXCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 164
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 165 QLSTGEEFGLVEEKVLCRIHYD 186
>gi|348536385|ref|XP_003455677.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 3 [Oreochromis
niloticus]
Length = 320
Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 69/121 (57%), Gaps = 5/121 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R
Sbjct: 73 CAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRF- 129
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA+++VYHL CF C CN GD F + D+ + C +
Sbjct: 130 -SVQRCARCHLGISASEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFGMKDSLVYCRLHF 188
Query: 173 E 173
E
Sbjct: 189 E 189
>gi|148224455|ref|NP_001087527.1| LIM/homeobox protein Lhx9 [Xenopus laevis]
gi|82198794|sp|Q68EY3.1|LHX9_XENLA RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
9
gi|51258697|gb|AAH80067.1| Lhx9 protein [Xenopus laevis]
Length = 331
Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 69/121 (57%), Gaps = 5/121 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R
Sbjct: 73 CAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLTLESELTCFAKDGSIYCKEDYYRF- 129
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA+ +VYHL CF C CN GD+F + +N + C +
Sbjct: 130 -SVKRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLSTGDQFGMKENLVYCRIHF 188
Query: 173 E 173
E
Sbjct: 189 E 189
>gi|391346181|ref|XP_003747357.1| PREDICTED: LIM homeobox transcription factor 1-beta.1-like
[Metaseiulus occidentalis]
Length = 434
Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 69/124 (55%), Gaps = 5/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L+ CA C + I +R+++K + WHE CL C C L ++ Y + I CK DY R
Sbjct: 56 LEVCAGCERPIVDRYIMKVRESSWHESCLICSVCHQHLA---TSCYSRERRIFCKNDYDR 112
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
LFG CAACT I E+VM+A + VYHL CF C C + GD + L + ++ C
Sbjct: 113 LFGAK--CAACTGSIAPAELVMKALDQVYHLSCFLCCTCGRQLQRGDEYVLRNGRLYCRQ 170
Query: 171 DYEE 174
D+E+
Sbjct: 171 DFEK 174
>gi|224058880|ref|XP_002190501.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Taeniopygia
guttata]
Length = 379
Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 79/142 (55%), Gaps = 6/142 (4%)
Query: 42 ALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANL 101
+L G A+ C C + I +RFLL+ D WHE C++C C L +T + +
Sbjct: 21 SLLGRAATPKSVCEGCQRVILDRFLLRLNDSLWHEQCVQCASCKEPLQ---TTCFYRDKK 77
Query: 102 ILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYL 161
+ CK DY +LF CA C + I E+VMRA+ +VYHL CF C C R GD F L
Sbjct: 78 LYCKLDYEKLFAVK--CAGCLEPIAPSELVMRAQKSVYHLHCFCCCVCERRLQKGDEFVL 135
Query: 162 CDNKILCEYDYE-ERQVFANIA 182
+ ++LC+ DYE ER++ + ++
Sbjct: 136 KEGQLLCKGDYEKERELLSLVS 157
>gi|3319763|emb|CAA04012.1| Lhx7 protein [Mus musculus]
Length = 365
Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 68/120 (56%), Gaps = 3/120 (2%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C+SCG I +++LLK DL WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 95 CSSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 153
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
T C+ C + I + + V RAK NVYHL CFAC C + G+ F L + K+LC ++
Sbjct: 154 TR--CSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHFD 211
>gi|147902022|ref|NP_001084038.1| LIM/homeobox protein Lhx5 [Xenopus laevis]
gi|1708831|sp|P37137.2|LHX5_XENLA RecName: Full=LIM/homeobox protein Lhx5; Short=LIM homeobox protein
5; AltName: Full=Homeobox protein LIM-5; Short=xLIM-5;
AltName: Full=xLIM-2A
gi|840658|gb|AAA99464.1| LIM class homeodomain protein [Xenopus laevis]
gi|54311470|gb|AAH84744.1| Lim5/Lhx5 protein [Xenopus laevis]
Length = 402
Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 68/123 (55%), Gaps = 6/123 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ CA C + I +RFLL LD WH C++C C C L E + + + CK D+ R
Sbjct: 2 MAHCAGCERPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKTDFFR 58
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCE 169
FGT CA C+ I ++V +A+N V+HL CF C CN + G+ Y+ D NK +C+
Sbjct: 59 RFGTK--CAGCSLGISPSDLVRKARNKVFHLNCFTCMVCNKQLSTGEELYIIDENKFVCK 116
Query: 170 YDY 172
DY
Sbjct: 117 EDY 119
>gi|291405647|ref|XP_002719296.1| PREDICTED: LIM homeobox protein 5 [Oryctolagus cuniculus]
Length = 406
Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 67/120 (55%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C C L E + + + CK D+ R FG
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFG 60
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C + I ++V RA++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 61 TK--CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
>gi|45382269|ref|NP_990744.1| LIM/homeobox protein Lhx1 [Gallus gallus]
gi|1708826|sp|P53411.1|LHX1_CHICK RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
1; AltName: Full=Homeobox protein Lim-1
gi|531183|gb|AAA62173.1| amino acid feature: homeodomain, bp 674 .. 853; amino acid feature:
LIM2, bp 326 .. 481; amino acid feature: LIM1, bp 149
..292 [Gallus gallus]
Length = 406
Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 67/120 (55%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C C L E + + + CK D+ R FG
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFG 60
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C + I ++V RA++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 61 TK--CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
>gi|52354701|gb|AAH82847.1| Unknown (protein for MGC:81549) [Xenopus laevis]
Length = 402
Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 69/123 (56%), Gaps = 6/123 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ CA C + I +RFLL LD WH C++C C C L E + + + + CK D+ R
Sbjct: 2 MAHCAGCERPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSRDSKLYCKTDFFR 58
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCE 169
FGT CA C+ I ++V +A+N V+HL CF C CN + G+ Y+ D NK +C+
Sbjct: 59 RFGTK--CAGCSLGISPSDLVRKARNKVFHLNCFTCMVCNKQLSTGEELYIIDENKFVCK 116
Query: 170 YDY 172
DY
Sbjct: 117 EDY 119
>gi|405971990|gb|EKC36789.1| LIM homeobox transcription factor 1-beta [Crassostrea gigas]
Length = 319
Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 68/121 (56%), Gaps = 5/121 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA CG I +++L K D WHE+CL+C C RL G T Y K + CK DY +LF
Sbjct: 15 CAGCGYPIRDKYLFKINDNVWHENCLQCAIC--RLSLSG-TCYSKNGHLYCKSDYDKLF- 70
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
G C+ C I E+V R +N YHL CF C +C H G+ FY+ D +I C YD++
Sbjct: 71 -RGRCSGCGFSINPHELVRRVYSNTYHLPCFRCVECGHVLQDGNEFYIRDGQIFCRYDHD 129
Query: 174 E 174
+
Sbjct: 130 K 130
>gi|62859483|ref|NP_001016082.1| LIM homeobox 5 [Xenopus (Silurana) tropicalis]
gi|89269010|emb|CAJ81605.1| LIM homeobox 5 [Xenopus (Silurana) tropicalis]
gi|189441838|gb|AAI67665.1| LIM homeobox 5 [Xenopus (Silurana) tropicalis]
gi|213624072|gb|AAI70608.1| LIM homeobox 5 [Xenopus (Silurana) tropicalis]
gi|213624092|gb|AAI70634.1| LIM homeobox 5 [Xenopus (Silurana) tropicalis]
Length = 402
Score = 95.9 bits (237), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 67/120 (55%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C C L E + + + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKTDFFRRFG 61
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C+ I ++V +A+N V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 62 TK--CAGCSLGISPSDLVRKARNKVFHLNCFTCMVCNKQLSTGEELYIIDENKFVCKEDY 119
>gi|549846|gb|AAA21644.1| LIM domain transcription factor LIM-1 [Homo sapiens]
Length = 404
Score = 95.9 bits (237), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 67/120 (55%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C C L E + + + CK D+ R FG
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFG 60
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C + I ++V RA++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 61 TK--CAGCRQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
>gi|71361857|gb|AAZ30032.1| LIM homeodomain protein, partial [Gallus gallus]
Length = 235
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 67/125 (53%), Gaps = 3/125 (2%)
Query: 49 GGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDY 108
G C+SCG I +R+LLK +L WH CL+C C L + S Y K I CK DY
Sbjct: 25 AGKNVCSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQHSC-YIKNKEIFCKMDY 83
Query: 109 LRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILC 168
FGT CA C + I A + V RA+ N YHL CFAC C + G+ F L + K+LC
Sbjct: 84 FSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLC 141
Query: 169 EYDYE 173
Y+
Sbjct: 142 RIHYD 146
>gi|432876050|ref|XP_004072952.1| PREDICTED: LIM/homeobox protein Lhx2-like [Oryzias latipes]
Length = 380
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 68/121 (56%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG++I +R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 74 CAGCGRKIADRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 131
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA++ VYHL CF C C GD F + D+ + C +
Sbjct: 132 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCGKMLTTGDHFGMKDSLVYCRLHF 190
Query: 173 E 173
E
Sbjct: 191 E 191
>gi|18858973|ref|NP_571291.1| LIM/homeobox protein Lhx1 [Danio rerio]
gi|2497670|sp|Q90476.1|LHX1_DANRE RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
1; AltName: Full=Homeobox protein Lim-1
gi|577525|gb|AAA92157.1| homeodomain protein [Danio rerio]
gi|190336961|gb|AAI62664.1| LIM homeobox 1a [Danio rerio]
gi|190339482|gb|AAI62396.1| LIM homeobox 1a [Danio rerio]
Length = 405
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 67/120 (55%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C C L E + + + CK D+ R FG
Sbjct: 4 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRRFG 60
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C + I ++V RA++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 61 TK--CAGCAQGISPNDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKDDY 118
>gi|432874756|ref|XP_004072577.1| PREDICTED: LIM homeobox transcription factor 1-beta-like [Oryzias
latipes]
Length = 398
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 85/173 (49%), Gaps = 10/173 (5%)
Query: 4 RRMWYIDICDYRSYFDSLRLATHYQVDLTTDASSVTQGALAGGASGGLKECASCGKRITE 63
+R+ + D R D +++ H + T G + G C C + I++
Sbjct: 11 QRLSAGEQTDTRIMLDGIKIEDH-----PLRSGQATLGVMLGSDCHHRSVCEGCQRPISD 65
Query: 64 RFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTK 123
RFL++ D WHE+CL+C C L ++ Y + + CK DY +LF T C+ C +
Sbjct: 66 RFLMRVNDSSWHEECLQCAVCQQPLT---TSCYLRERKLYCKHDYQQLFATK--CSGCME 120
Query: 124 VIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQ 176
I E VMRA VYHL CF C C+ + GD F L + ++LC+ DYE +
Sbjct: 121 KIAPTEFVMRALECVYHLNCFCCCVCDRQLRKGDEFVLKEGQLLCKVDYEREK 173
>gi|547852|sp|P36198.1|LHX2_RAT RecName: Full=LIM/homeobox protein Lhx2; Short=Homeobox protein
LH-2; Short=LIM homeobox protein 2
Length = 426
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 68/121 (56%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 52 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 109
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I EMVMRA++ VYHL CF C CN GD F + D+ + C +
Sbjct: 110 -SVQRCARCHLGISESEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHF 168
Query: 173 E 173
E
Sbjct: 169 E 169
>gi|259013283|ref|NP_001158443.1| lim homeobox 2/9 protein [Saccoglossus kowalevskii]
gi|197320559|gb|ACH68441.1| lim homeobox 2/9 protein [Saccoglossus kowalevskii]
Length = 402
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 67/121 (55%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG RI +R+ L A+D WH CLKC C+C+L + T + K I CK DY R F
Sbjct: 59 CAGCGGRILDRYYLLAVDKQWHMQCLKC--CECKLRLDSELTCFAKDGSIYCKDDYYRRF 116
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA++ VYHL CF C CN GD F + D + C Y
Sbjct: 117 -SVKRCARCHLGISASEMVMRARDLVYHLSCFTCATCNKALATGDHFGMKDAMVYCRSHY 175
Query: 173 E 173
E
Sbjct: 176 E 176
>gi|383792181|ref|NP_001244317.1| LIM homeobox transcription factor 1-alpha [Gallus gallus]
Length = 380
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 86/166 (51%), Gaps = 9/166 (5%)
Query: 18 FDSLRLATHYQVDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHED 77
D L++ Q L A +L G A+ C C + I +RFLL+ D WHE
Sbjct: 2 LDGLKMEETLQSALDPAAPF---SSLLGRAATPRSVCEGCQRVIADRFLLRLNDSLWHER 58
Query: 78 CLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNN 137
C++C C L +T + + + CK DY +LF CA C + I E+VMRA+ +
Sbjct: 59 CVQCTSCKEPLH---TTCFYRDKKLYCKLDYEKLFAVK--CAGCLESIAPSELVMRAQQS 113
Query: 138 VYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFANIA 182
VYHL CF C C R GD F L + ++LC+ DYE ER++ + ++
Sbjct: 114 VYHLHCFCCCVCERRLQKGDEFVLKEGQLLCKGDYEKERELLSLVS 159
>gi|432899669|ref|XP_004076609.1| PREDICTED: LIM/homeobox protein Lhx1-like [Oryzias latipes]
Length = 402
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 68/121 (56%), Gaps = 6/121 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C SC K I +RFLLK LD WH C++C C C L E + + + CK D+ R FG
Sbjct: 4 CTSCEKPILDRFLLKVLDRPWHVKCVQCCECKCSLTE---KCFSRDGRLYCKNDFFRRFG 60
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDN-KILCEYDY 172
T C C++ I ++V RAK+ V+HL CF C CN + G+ Y+ D K +C+ DY
Sbjct: 61 TK--CGGCSQGILPSDLVRRAKSKVFHLNCFTCVMCNKQLSTGEELYILDEFKFVCKEDY 118
Query: 173 E 173
+
Sbjct: 119 Q 119
>gi|431897001|gb|ELK06265.1| LIM/homeobox protein Lhx8 [Pteropus alecto]
Length = 306
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 67/120 (55%), Gaps = 3/120 (2%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C SCG I +++LLK DL WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 96 CNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 154
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
T C+ C + I + + V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 155 TR--CSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 212
>gi|432113616|gb|ELK35898.1| LIM/homeobox protein Lhx1 [Myotis davidii]
Length = 272
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 67/120 (55%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C C L E + + + CK D+ R FG
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFG 60
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C + I ++V RA++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 61 TK--CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
>gi|321464128|gb|EFX75138.1| hypothetical protein DAPPUDRAFT_323670 [Daphnia pulex]
Length = 278
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 70/124 (56%), Gaps = 6/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ CA C I +RF+LK LD WH +CLKC C L + + + CK D+ R
Sbjct: 38 IPRCAGCSGFILDRFILKVLDRPWHTECLKCMDCGTHLVD---KCFVRGGSTYCKEDFFR 94
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
FGT CA C + I ++V RA+++VYHLECF C C + GD FYL D K++C+
Sbjct: 95 RFGTK--CACCDQGIAPSQIVRRAQHHVYHLECFQCVLCGRQLDTGDEFYLMEDRKLVCK 152
Query: 170 YDYE 173
DYE
Sbjct: 153 ADYE 156
>gi|410912158|ref|XP_003969557.1| PREDICTED: insulin gene enhancer protein ISL-3-like [Takifugu
rubripes]
Length = 359
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 82/151 (54%), Gaps = 5/151 (3%)
Query: 50 GLKECASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDY 108
G C CG +I ++++LK + DL WH CLKC C L E T + + CKRDY
Sbjct: 23 GFAMCVGCGSQIHDQYILKVSPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDY 81
Query: 109 LRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILC 168
+RLFG CA C + ++VMRA+++VYH+ECF C C+ + GD F L + ++LC
Sbjct: 82 VRLFGIK--CAKCNLGFSSSDLVMRARDHVYHIECFRCSVCSRQLLPGDEFSLREEELLC 139
Query: 169 EYDYEERQVFANIAYNPSSLAHLRRQVTLQV 199
D+ + + A +P S HL L +
Sbjct: 140 RADH-SILLEKSSAGSPISPGHLHSNRALHL 169
>gi|18858977|ref|NP_571293.1| LIM/homeobox protein Lhx5 [Danio rerio]
gi|1708830|sp|P52889.1|LHX5_DANRE RecName: Full=LIM/homeobox protein Lhx5; Short=LIM homeobox protein
5; AltName: Full=Homeobox protein LIM-5
gi|840664|gb|AAA99465.1| LIM class homeodomain protein [Danio rerio]
gi|68534671|gb|AAH98523.1| LIM homeobox 5 [Danio rerio]
Length = 399
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 70/132 (53%), Gaps = 6/132 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C+C L E + + + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHAKCVQCCECNCNLTE---KCFSRDGKLYCKIDFFRRFG 61
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C + I ++V RA++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 62 TK--CAGCLQGISPSDLVRRARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKEDY 119
Query: 173 EERQVFANIAYN 184
+ N
Sbjct: 120 LSASAIKEVNLN 131
>gi|345132129|gb|AEN75257.1| apterous [Neanthes arenaceodentata]
Length = 420
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 74/138 (53%), Gaps = 3/138 (2%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA CG +I +R+ L A+D WH +CLKC C L + T + K I CK DY R F
Sbjct: 61 CAGCGGKIIDRYYLLAVDKQWHINCLKCADCHLPL-DSELTCFAKDGEIFCKEDYYRRFA 119
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
C+ C + I A E+VMRA+ +V+H+ CF C C+ GD F + D+ I C YE
Sbjct: 120 VK-RCSRCHQAISANELVMRAREHVFHIGCFTCASCSKALTTGDYFGMKDHLIYCRSHYE 178
Query: 174 ERQVFANI-AYNPSSLAH 190
A I + P SL+H
Sbjct: 179 HIMQGAFIGSPPPPSLSH 196
>gi|426248250|ref|XP_004017877.1| PREDICTED: LOW QUALITY PROTEIN: insulin gene enhancer protein ISL-2
[Ovis aries]
Length = 366
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 73/124 (58%), Gaps = 4/124 (3%)
Query: 50 GLKECASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDY 108
G C CG +I ++F+L+ + DL WH CLKC C L E T + + CKRDY
Sbjct: 23 GTAMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDY 81
Query: 109 LRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILC 168
+RLFG CA C + ++VMRA+++VYH+ECF C C+ + GD F L ++++LC
Sbjct: 82 VRLFGIK--CAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLC 139
Query: 169 EYDY 172
D+
Sbjct: 140 RADH 143
>gi|410915338|ref|XP_003971144.1| PREDICTED: LIM/homeobox protein Lhx1-like [Takifugu rubripes]
Length = 397
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 67/121 (55%), Gaps = 6/121 (4%)
Query: 53 ECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLF 112
+C SC K I +RFLLK LD WH C++C C C L E + + + CK D+ R F
Sbjct: 3 QCTSCEKPILDRFLLKVLDRPWHVKCVQCCDCKCTLSE---KCFSREGKLYCKNDFFRRF 59
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDN-KILCEYD 171
GT C C + I ++V RAK+ V+HL CF C CN + G+ Y+ D K +C+ D
Sbjct: 60 GTK--CDGCAQGILPSDLVRRAKSKVFHLNCFTCMMCNKQLSTGEELYVLDEFKFVCKED 117
Query: 172 Y 172
Y
Sbjct: 118 Y 118
>gi|291232097|ref|XP_002736028.1| PREDICTED: lim 1/5-like [Saccoglossus kowalevskii]
Length = 498
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 70/120 (58%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C+C L + Y + + C+ D++R +G
Sbjct: 5 CAGCDRPILDRFLLNVLDRAWHVKCVQCSDCNCTLSD---KCYSREGKLYCRTDFVRRYG 61
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C+ I ++V RA+N V+HL+CF C C+ + G+ Y+ D N+ +C+ DY
Sbjct: 62 TK--CAGCSHGIAPNDLVRRARNKVFHLKCFTCMVCSKQLSTGEELYVVDENQYICKDDY 119
>gi|348532229|ref|XP_003453609.1| PREDICTED: LIM/homeobox protein Lhx1-like [Oreochromis niloticus]
Length = 407
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 67/120 (55%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C C L E + + + CK D+ R FG
Sbjct: 4 CAGCERPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGRLYCKNDFFRRFG 60
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T C C++ I ++V RA++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 61 TK--CGGCSQGISPNDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKDDY 118
>gi|193786574|dbj|BAG51357.1| unnamed protein product [Homo sapiens]
Length = 406
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 68/121 (56%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K CK DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSSYCKEDYYRRF 110
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA++ VYHL CF C CN GD F + D+ + C +
Sbjct: 111 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHF 169
Query: 173 E 173
E
Sbjct: 170 E 170
>gi|332844416|ref|XP_003314842.1| PREDICTED: insulin gene enhancer protein ISL-2 isoform 2 [Pan
troglodytes]
gi|426379890|ref|XP_004056620.1| PREDICTED: insulin gene enhancer protein ISL-2 isoform 2 [Gorilla
gorilla gorilla]
Length = 360
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 73/124 (58%), Gaps = 4/124 (3%)
Query: 50 GLKECASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDY 108
G C CG +I ++F+L+ + DL WH CLKC C L E T + + CKRDY
Sbjct: 23 GTAMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDY 81
Query: 109 LRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILC 168
+RLFG CA C + ++VMRA+++VYH+ECF C C+ + GD F L ++++LC
Sbjct: 82 VRLFGIK--CAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLC 139
Query: 169 EYDY 172
D+
Sbjct: 140 RADH 143
>gi|321477982|gb|EFX88940.1| hypothetical protein DAPPUDRAFT_4176 [Daphnia pulex]
Length = 199
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 68/119 (57%), Gaps = 3/119 (2%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA+CG+ IT+RFL++ WH CL+C C L S + +A I C+ DY R FG
Sbjct: 1 CAACGELITDRFLIQVSGRTWHSTCLRCSVCRTALDNQPS-CFVRAGAIYCRADYTRTFG 59
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
CA C++ I A + V RA+ +VYHL CFAC C + G+ F L + ++LC+ Y
Sbjct: 60 --AKCARCSRSISAADWVRRAREHVYHLACFACDACRRQLSTGEEFALHEGRVLCKTHY 116
>gi|47214973|emb|CAG01307.1| unnamed protein product [Tetraodon nigroviridis]
Length = 396
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 72/129 (55%), Gaps = 6/129 (4%)
Query: 46 GASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILC 104
G G L CA CG++I +R+ L A+D WH CL+C C+C+L E T + K I C
Sbjct: 47 GERGAL--CAGCGRKIVDRYYLLAVDKQWHMRCLRC--CECKLHLESELTCFSKDGSIYC 102
Query: 105 KRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDN 164
K DY R F + CA C I A EMVMRA++ VYHL CF C C+ GD F + D+
Sbjct: 103 KEDYYRRF-SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCSKMLTTGDHFGMKDS 161
Query: 165 KILCEYDYE 173
+ C +E
Sbjct: 162 LVYCRLHFE 170
>gi|395822580|ref|XP_003784594.1| PREDICTED: insulin gene enhancer protein ISL-2 [Otolemur garnettii]
Length = 359
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 73/124 (58%), Gaps = 4/124 (3%)
Query: 50 GLKECASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDY 108
G C CG +I ++F+L+ + DL WH CLKC C L E T + + CKRDY
Sbjct: 23 GTAMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDY 81
Query: 109 LRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILC 168
+RLFG CA C + ++VMRA+++VYH+ECF C C+ + GD F L ++++LC
Sbjct: 82 VRLFGIK--CAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLC 139
Query: 169 EYDY 172
D+
Sbjct: 140 RADH 143
>gi|348504222|ref|XP_003439661.1| PREDICTED: LIM homeobox transcription factor 1-beta-like
[Oreochromis niloticus]
Length = 456
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 73/132 (55%), Gaps = 6/132 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C C + I++RFL++ WH+ CL+C C L + T Y + CK DY +LF
Sbjct: 32 CEGCAQIISDRFLMRVNGASWHQKCLQCAACQQPLTD---TCYFRDTKPYCKSDYQQLFA 88
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
C+ C I E VMRA ++VYHL CF C C H+ C GD F L + ++LC+ DYE
Sbjct: 89 VE--CSNCLGKIAPTEFVMRALDSVYHLSCFCCCVCQHQLCKGDEFVLKEGQLLCKTDYE 146
Query: 174 -ERQVFANIAYN 184
ER +F ++ +
Sbjct: 147 RERTLFNTLSPD 158
>gi|62020648|gb|AAH20470.1| LHX1 protein, partial [Homo sapiens]
Length = 260
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 67/120 (55%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C C L E + + + CK D+ R FG
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFG 60
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C + I ++V RA++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 61 TK--CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
>gi|300795417|ref|NP_001178166.1| insulin gene enhancer protein ISL-2 [Bos taurus]
Length = 359
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 73/124 (58%), Gaps = 4/124 (3%)
Query: 50 GLKECASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDY 108
G C CG +I ++F+L+ + DL WH CLKC C L E T + + CKRDY
Sbjct: 23 GTAMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDY 81
Query: 109 LRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILC 168
+RLFG CA C + ++VMRA+++VYH+ECF C C+ + GD F L ++++LC
Sbjct: 82 VRLFGIK--CAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLC 139
Query: 169 EYDY 172
D+
Sbjct: 140 RADH 143
>gi|12851555|dbj|BAB29088.1| unnamed protein product [Mus musculus]
Length = 359
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 73/124 (58%), Gaps = 4/124 (3%)
Query: 50 GLKECASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDY 108
G C CG +I ++F+L+ + DL WH CLKC C L E T + + CKRDY
Sbjct: 23 GTAMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDY 81
Query: 109 LRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILC 168
+RLFG CA C + ++VMRA+++VYH+ECF C C+ + GD F L ++++LC
Sbjct: 82 VRLFGIK--CAQCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLC 139
Query: 169 EYDY 172
D+
Sbjct: 140 RADH 143
>gi|296236843|ref|XP_002763501.1| PREDICTED: insulin gene enhancer protein ISL-2 [Callithrix jacchus]
Length = 359
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 73/124 (58%), Gaps = 4/124 (3%)
Query: 50 GLKECASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDY 108
G C CG +I ++F+L+ + DL WH CLKC C L E T + + CKRDY
Sbjct: 23 GTAMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDY 81
Query: 109 LRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILC 168
+RLFG CA C + ++VMRA+++VYH+ECF C C+ + GD F L ++++LC
Sbjct: 82 VRLFGIK--CAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLC 139
Query: 169 EYDY 172
D+
Sbjct: 140 RADH 143
>gi|9994171|ref|NP_065204.1| insulin gene enhancer protein ISL-2 [Rattus norvegicus]
gi|1708563|sp|P50480.1|ISL2_RAT RecName: Full=Insulin gene enhancer protein ISL-2; Short=Islet-2
gi|531218|gb|AAA62161.1| amino acid feature: homeodomain, bp 647 .. 826; amino acid feature:
LIM1, bp 155 .. 307; amino acid feature: LIM2, bp 341 ..
493 [Rattus norvegicus]
Length = 360
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 73/124 (58%), Gaps = 4/124 (3%)
Query: 50 GLKECASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDY 108
G C CG +I ++F+L+ + DL WH CLKC C L E T + + CKRDY
Sbjct: 23 GTAMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDY 81
Query: 109 LRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILC 168
+RLFG CA C + ++VMRA+++VYH+ECF C C+ + GD F L ++++LC
Sbjct: 82 VRLFGIK--CAQCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLC 139
Query: 169 EYDY 172
D+
Sbjct: 140 RADH 143
>gi|149041730|gb|EDL95571.1| insulin related protein 2 (islet 2) [Rattus norvegicus]
Length = 359
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 73/124 (58%), Gaps = 4/124 (3%)
Query: 50 GLKECASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDY 108
G C CG +I ++F+L+ + DL WH CLKC C L E T + + CKRDY
Sbjct: 23 GTAMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDY 81
Query: 109 LRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILC 168
+RLFG CA C + ++VMRA+++VYH+ECF C C+ + GD F L ++++LC
Sbjct: 82 VRLFGIK--CAQCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLC 139
Query: 169 EYDY 172
D+
Sbjct: 140 RADH 143
>gi|296475432|tpg|DAA17547.1| TPA: ISL LIM homeobox 2 [Bos taurus]
gi|440909295|gb|ELR59218.1| Insulin enhancer protein ISL-2 [Bos grunniens mutus]
Length = 359
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 73/124 (58%), Gaps = 4/124 (3%)
Query: 50 GLKECASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDY 108
G C CG +I ++F+L+ + DL WH CLKC C L E T + + CKRDY
Sbjct: 23 GTAMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDY 81
Query: 109 LRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILC 168
+RLFG CA C + ++VMRA+++VYH+ECF C C+ + GD F L ++++LC
Sbjct: 82 VRLFGIK--CAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLC 139
Query: 169 EYDY 172
D+
Sbjct: 140 RADH 143
>gi|21956641|ref|NP_665804.1| insulin gene enhancer protein ISL-2 [Homo sapiens]
gi|114658283|ref|XP_001147206.1| PREDICTED: insulin gene enhancer protein ISL-2 isoform 1 [Pan
troglodytes]
gi|297697192|ref|XP_002825752.1| PREDICTED: insulin gene enhancer protein ISL-2 [Pongo abelii]
gi|426379888|ref|XP_004056619.1| PREDICTED: insulin gene enhancer protein ISL-2 isoform 1 [Gorilla
gorilla gorilla]
gi|20978495|sp|Q96A47.1|ISL2_HUMAN RecName: Full=Insulin gene enhancer protein ISL-2; Short=Islet-2
gi|15080438|gb|AAH11967.1| ISL LIM homeobox 2 [Homo sapiens]
gi|15082435|gb|AAH12136.1| ISL LIM homeobox 2 [Homo sapiens]
gi|119619626|gb|EAW99220.1| ISL2 transcription factor, LIM/homeodomain, (islet-2) [Homo
sapiens]
gi|167773881|gb|ABZ92375.1| ISL LIM homeobox 2 [synthetic construct]
gi|193785483|dbj|BAG50849.1| unnamed protein product [Homo sapiens]
Length = 359
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 73/124 (58%), Gaps = 4/124 (3%)
Query: 50 GLKECASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDY 108
G C CG +I ++F+L+ + DL WH CLKC C L E T + + CKRDY
Sbjct: 23 GTAMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDY 81
Query: 109 LRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILC 168
+RLFG CA C + ++VMRA+++VYH+ECF C C+ + GD F L ++++LC
Sbjct: 82 VRLFGIK--CAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLC 139
Query: 169 EYDY 172
D+
Sbjct: 140 RADH 143
>gi|156398319|ref|XP_001638136.1| predicted protein [Nematostella vectensis]
gi|156225254|gb|EDO46073.1| predicted protein [Nematostella vectensis]
Length = 329
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 71/121 (58%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLF 112
C CG +I ++++L+ A DL WH CLKC C L E T + + CKRDY+RLF
Sbjct: 17 CVGCGSQIHDQYILRVAPDLEWHASCLKCADCHMYLDE-KCTCFVREGKTYCKRDYVRLF 75
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
GT CA C+ + VMRA+N +YH++CF C C+ + GD F L ++ + C+ D+
Sbjct: 76 GTK--CAKCSLNFSKNDFVMRARNKIYHIDCFRCVACSRQLVPGDEFALREDGLFCKADH 133
Query: 173 E 173
E
Sbjct: 134 E 134
>gi|149691761|ref|XP_001490268.1| PREDICTED: insulin gene enhancer protein ISL-2 [Equus caballus]
Length = 359
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 73/124 (58%), Gaps = 4/124 (3%)
Query: 50 GLKECASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDY 108
G C CG +I ++F+L+ + DL WH CLKC C L E T + + CKRDY
Sbjct: 23 GTAMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDY 81
Query: 109 LRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILC 168
+RLFG CA C + ++VMRA+++VYH+ECF C C+ + GD F L ++++LC
Sbjct: 82 VRLFGIK--CAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLC 139
Query: 169 EYDY 172
D+
Sbjct: 140 RADH 143
>gi|154146254|ref|NP_081673.2| insulin gene enhancer protein ISL-2 [Mus musculus]
gi|408360153|sp|Q9CXV0.2|ISL2_MOUSE RecName: Full=Insulin gene enhancer protein ISL-2; Short=Islet-2
gi|148693907|gb|EDL25854.1| insulin related protein 2 (islet 2) [Mus musculus]
gi|183396835|gb|AAI65972.1| Insulin related protein 2 (islet 2) [synthetic construct]
Length = 359
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 73/124 (58%), Gaps = 4/124 (3%)
Query: 50 GLKECASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDY 108
G C CG +I ++F+L+ + DL WH CLKC C L E T + + CKRDY
Sbjct: 23 GTAMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDY 81
Query: 109 LRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILC 168
+RLFG CA C + ++VMRA+++VYH+ECF C C+ + GD F L ++++LC
Sbjct: 82 VRLFGIK--CAQCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLC 139
Query: 169 EYDY 172
D+
Sbjct: 140 RADH 143
>gi|109081997|ref|XP_001105068.1| PREDICTED: insulin gene enhancer protein ISL-2 isoform 2 [Macaca
mulatta]
Length = 359
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 73/124 (58%), Gaps = 4/124 (3%)
Query: 50 GLKECASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDY 108
G C CG +I ++F+L+ + DL WH CLKC C L E T + + CKRDY
Sbjct: 23 GTAMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDY 81
Query: 109 LRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILC 168
+RLFG CA C + ++VMRA+++VYH+ECF C C+ + GD F L ++++LC
Sbjct: 82 VRLFGIK--CAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLC 139
Query: 169 EYDY 172
D+
Sbjct: 140 RADH 143
>gi|308485364|ref|XP_003104881.1| CRE-LIN-11 protein [Caenorhabditis remanei]
gi|308257579|gb|EFP01532.1| CRE-LIN-11 protein [Caenorhabditis remanei]
Length = 415
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 79/140 (56%), Gaps = 8/140 (5%)
Query: 35 ASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGST 94
SS TQ ++ +SG ECA+C + I +R++ L WH+ CL+C CDCR + T
Sbjct: 61 PSSTTQPHISEISSGN--ECAACAQPILDRYVFTVLGKCWHQSCLRC--CDCR-APMSMT 115
Query: 95 LYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFC 154
+ K LILCK DY R +G CA C + ++V RA++ V+H+ CF C C
Sbjct: 116 CFSKDGLILCKTDYSRRYG--HRCAGCDGKLEKEDLVRRARDKVFHIRCFQCSVCQRLLD 173
Query: 155 VGDRFYLCD-NKILCEYDYE 173
GD+ Y+ + N+ +C+ D++
Sbjct: 174 TGDQLYIMEGNRFMCQNDFQ 193
>gi|194390004|dbj|BAG60518.1| unnamed protein product [Homo sapiens]
Length = 301
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 67/120 (55%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C C L E + + + CK D+ R FG
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFG 60
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C + I ++V RA++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 61 TK--CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
>gi|47221465|emb|CAG08127.1| unnamed protein product [Tetraodon nigroviridis]
Length = 535
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 68/121 (56%), Gaps = 3/121 (2%)
Query: 53 ECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLF 112
+CASCG I +R+LLK +L WH CL+C C L + S Y K I CK DY F
Sbjct: 18 QCASCGMDIQDRYLLKVNNLNWHLGCLECSVCRASLRQHNSC-YVKNKEIFCKLDYFSRF 76
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
GT CA C + + A + V RA+ +VYHL CFAC C + G+ F L + ++LC Y
Sbjct: 77 GTK--CAQCGRQVYASDWVRRARGSVYHLACFACFSCKRQLSTGEEFGLVEGRVLCRSHY 134
Query: 173 E 173
+
Sbjct: 135 D 135
>gi|403304939|ref|XP_003943036.1| PREDICTED: insulin gene enhancer protein ISL-2 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 360
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 72/124 (58%), Gaps = 4/124 (3%)
Query: 50 GLKECASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDY 108
G C CG +I + F+L+ + DL WH CLKC C L E T + + CKRDY
Sbjct: 23 GTATCVGCGSQIHDPFILRVSPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDY 81
Query: 109 LRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILC 168
+RLFG CA C + ++VMRA+++VYH+ECF C C+ + GD F L ++++LC
Sbjct: 82 VRLFGIK--CAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLC 139
Query: 169 EYDY 172
D+
Sbjct: 140 RADH 143
>gi|351696280|gb|EHA99198.1| LIM/homeobox protein Lhx8 [Heterocephalus glaber]
Length = 348
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 68/130 (52%), Gaps = 3/130 (2%)
Query: 44 AGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLIL 103
G G C SCG I +++LLK L WH CL C C LG ++ Y K I
Sbjct: 57 GSGCPPGKCVCNSCGLEIVDKYLLKVNGLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIF 115
Query: 104 CKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD 163
CK DY R +GT C+ C + I + + V RAK NVYHL CFAC C + G+ F L +
Sbjct: 116 CKLDYFRRYGTR--CSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVE 173
Query: 164 NKILCEYDYE 173
K+LC Y+
Sbjct: 174 EKVLCRVHYD 183
>gi|258504089|gb|ACV72750.1| LIN-11 [Caenorhabditis remanei]
gi|258504091|gb|ACV72751.1| LIN-11 [Caenorhabditis remanei]
gi|258504093|gb|ACV72752.1| LIN-11 [Caenorhabditis remanei]
gi|258504099|gb|ACV72755.1| LIN-11 [Caenorhabditis remanei]
gi|258504113|gb|ACV72762.1| LIN-11 [Caenorhabditis remanei]
gi|258504115|gb|ACV72763.1| LIN-11 [Caenorhabditis remanei]
Length = 383
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 79/140 (56%), Gaps = 8/140 (5%)
Query: 35 ASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGST 94
SS TQ ++ +SG ECA+C + I +R++ L WH+ CL+C CDCR + T
Sbjct: 46 PSSTTQPHISEISSGN--ECAACAQPILDRYVFTVLGKCWHQSCLRC--CDCR-APMSMT 100
Query: 95 LYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFC 154
+ K LILCK DY R +G CA C + ++V RA++ V+H+ CF C C
Sbjct: 101 CFSKDGLILCKTDYSRRYG--HRCAGCDGKLEKEDLVRRARDKVFHIRCFQCSVCQRLLD 158
Query: 155 VGDRFYLCD-NKILCEYDYE 173
GD+ Y+ + N+ +C+ D++
Sbjct: 159 TGDQLYIMEGNRFMCQNDFQ 178
>gi|88954018|gb|ABD59002.1| LIM-homeodomain protein AmphiLim1/5 [Branchiostoma floridae]
Length = 464
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 73/128 (57%), Gaps = 6/128 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + + +RFLL LD WH C++C C CRL E + + + + C+ D+ R FG
Sbjct: 5 CAGCERPVLDRFLLNVLDRAWHAKCVRCSDCSCRLTE---KCFTRDSKLYCREDFFRRFG 61
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDY 172
T CA CT+ I ++V RA+N V+HL+CF C C + G+ ++ D+K +C+ Y
Sbjct: 62 TK--CAGCTQGILPNDLVRRARNKVFHLKCFTCAACAKQMATGEELFVVDDDKFICKDCY 119
Query: 173 EERQVFAN 180
+V A+
Sbjct: 120 HNNKVTAD 127
>gi|258504095|gb|ACV72753.1| LIN-11 [Caenorhabditis remanei]
gi|258504097|gb|ACV72754.1| LIN-11 [Caenorhabditis remanei]
gi|258504103|gb|ACV72757.1| LIN-11 [Caenorhabditis remanei]
gi|258504107|gb|ACV72759.1| LIN-11 [Caenorhabditis remanei]
gi|258504109|gb|ACV72760.1| LIN-11 [Caenorhabditis remanei]
gi|258504111|gb|ACV72761.1| LIN-11 [Caenorhabditis remanei]
gi|258504117|gb|ACV72764.1| LIN-11 [Caenorhabditis remanei]
gi|258504119|gb|ACV72765.1| LIN-11 [Caenorhabditis remanei]
Length = 383
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 79/140 (56%), Gaps = 8/140 (5%)
Query: 35 ASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGST 94
SS TQ ++ +SG ECA+C + I +R++ L WH+ CL+C CDCR + T
Sbjct: 46 PSSTTQPHISEISSGN--ECAACAQPILDRYVFTVLGKCWHQSCLRC--CDCR-APMSMT 100
Query: 95 LYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFC 154
+ K LILCK DY R +G CA C + ++V RA++ V+H+ CF C C
Sbjct: 101 CFSKDGLILCKTDYSRRYG--HRCAGCDGKLEKEDLVRRARDKVFHIRCFQCSVCQRLLD 158
Query: 155 VGDRFYLCD-NKILCEYDYE 173
GD+ Y+ + N+ +C+ D++
Sbjct: 159 TGDQLYIMEGNRFMCQNDFQ 178
>gi|258504101|gb|ACV72756.1| LIN-11 [Caenorhabditis remanei]
gi|258504105|gb|ACV72758.1| LIN-11 [Caenorhabditis remanei]
Length = 383
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 79/140 (56%), Gaps = 8/140 (5%)
Query: 35 ASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGST 94
SS TQ ++ +SG ECA+C + I +R++ L WH+ CL+C CDCR + T
Sbjct: 46 PSSTTQPHISEISSGN--ECAACAQPILDRYVFTVLGKCWHQSCLRC--CDCR-APMSMT 100
Query: 95 LYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFC 154
+ K LILCK DY R +G CA C + ++V RA++ V+H+ CF C C
Sbjct: 101 CFSKDGLILCKTDYSRRYG--HRCAGCDGKLEKEDLVRRARDKVFHIRCFQCSVCQRLLD 158
Query: 155 VGDRFYLCD-NKILCEYDYE 173
GD+ Y+ + N+ +C+ D++
Sbjct: 159 TGDQLYIMEGNRFMCQNDFQ 178
>gi|403304937|ref|XP_003943035.1| PREDICTED: insulin gene enhancer protein ISL-2 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 359
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 72/124 (58%), Gaps = 4/124 (3%)
Query: 50 GLKECASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDY 108
G C CG +I + F+L+ + DL WH CLKC C L E T + + CKRDY
Sbjct: 23 GTATCVGCGSQIHDPFILRVSPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDY 81
Query: 109 LRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILC 168
+RLFG CA C + ++VMRA+++VYH+ECF C C+ + GD F L ++++LC
Sbjct: 82 VRLFGIK--CAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLC 139
Query: 169 EYDY 172
D+
Sbjct: 140 RADH 143
>gi|291410745|ref|XP_002721643.1| PREDICTED: ISL LIM homeobox 2 [Oryctolagus cuniculus]
Length = 359
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 73/124 (58%), Gaps = 4/124 (3%)
Query: 50 GLKECASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDY 108
G C CG +I ++F+L+ + DL WH CLKC C L E T + + CKRDY
Sbjct: 23 GTAMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDY 81
Query: 109 LRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILC 168
+RLFG CA C + ++VMRA+++VYH+ECF C C+ + GD F L ++++LC
Sbjct: 82 VRLFGIK--CAKCQVGFGSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLC 139
Query: 169 EYDY 172
D+
Sbjct: 140 RADH 143
>gi|432885359|ref|XP_004074682.1| PREDICTED: LIM/homeobox protein Lhx5-like [Oryzias latipes]
Length = 396
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 71/132 (53%), Gaps = 6/132 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C+C L E + + + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHAKCVQCCDCNCNLTE---KCFSRDGKLYCKMDFFRRFG 61
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C + I ++V +A++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 62 TK--CAGCLQGISPNDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKEDY 119
Query: 173 EERQVFANIAYN 184
++ N
Sbjct: 120 LSPGSIKEVSLN 131
>gi|348543221|ref|XP_003459082.1| PREDICTED: LIM/homeobox protein Lhx9-like [Oreochromis niloticus]
Length = 509
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 70/120 (58%), Gaps = 2/120 (1%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA CG+++ +RF L A WH CL+C C C L + +LY + I C++DY R+FG
Sbjct: 172 CAGCGEQVLDRFFLLAAGRVWHNPCLRCSQCQCEL-QTHPSLYWRDGNIYCQQDYCRMFG 230
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
G CA C + IPA ++VMR+ +H CF+CQ+C+ + G+ + + + C+ Y+
Sbjct: 231 G-GQCARCFQPIPASDLVMRSGELTFHPHCFSCQECDVKLMPGNLYCMQGANLYCQSHYQ 289
>gi|432856535|ref|XP_004068463.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Oryzias
latipes]
Length = 348
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 70/135 (51%), Gaps = 11/135 (8%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C C +RIT+RFLL+ D WHE C++C C L L +K + CKRDY LF
Sbjct: 16 CVGCQRRITDRFLLRVADGLWHERCVRCAACGDALRNSCFLLERK---LYCKRDYSSLFA 72
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILC-EYDY 172
+C C + I E+VMRA V+HL CF C C H GDR L D ++LC DY
Sbjct: 73 V--HCGGCAEAISPSELVMRAGAAVFHLSCFTCSVCFHHLKTGDRCILQDGRLLCAREDY 130
Query: 173 EERQVFANIAYNPSS 187
+ Q A PSS
Sbjct: 131 HQLQ-----ASPPSS 140
>gi|157118342|ref|XP_001653180.1| lim homeobox protein [Aedes aegypti]
gi|108883303|gb|EAT47528.1| AAEL001380-PA [Aedes aegypti]
Length = 387
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 82/144 (56%), Gaps = 5/144 (3%)
Query: 32 TTDASSVTQG-ALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGE 90
T +A S +Q A GG++G C C I +R+++K +D+ +HE CL+C C RL
Sbjct: 103 TVEALSTSQSSATTGGSAGNTTLCGQCCSPICDRYIMKVVDISYHERCLQCTSCAIRLMH 162
Query: 91 VGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCN 150
+ + + + C+ DY RL+G C C + I A E+VMRA +NV+HL+CF C C
Sbjct: 163 ---SCFMRDGKLYCRFDYERLYGRN-RCLGCGEKIGADELVMRALDNVFHLKCFICVVCG 218
Query: 151 HRFCVGDRFYLCDNKILCEYDYEE 174
R GD++ + +++ C DYE+
Sbjct: 219 VRLQKGDQYVIKQSQLFCRPDYEK 242
>gi|432872837|ref|XP_004072149.1| PREDICTED: LIM/homeobox protein Lhx6-like [Oryzias latipes]
Length = 346
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 69/121 (57%), Gaps = 3/121 (2%)
Query: 53 ECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLF 112
+CA+CG I +R+LLK +L WH CL+C C L + S+ Y K I CK DY F
Sbjct: 67 QCANCGIEIHDRYLLKVNNLNWHLGCLECSVCRASLHQ-HSSCYVKNKEIYCKLDYFSRF 125
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
GT CA C + + A + V RA+ +VYHL CFAC C + G+ F L + ++LC Y
Sbjct: 126 GTK--CAQCGRQVYASDWVRRARGSVYHLACFACFSCKRQLSTGEEFGLVEGRVLCRSHY 183
Query: 173 E 173
+
Sbjct: 184 D 184
>gi|390339027|ref|XP_781774.3| PREDICTED: insulin gene enhancer protein ISL-1-like
[Strongylocentrotus purpuratus]
Length = 402
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 71/121 (58%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLF 112
C CG I ++++L+ A DL WH CLKC C C + T + + CKRDYLRLF
Sbjct: 51 CVGCGGSIQDQYILRVAPDLEWHAACLKCADC-CTYLDETCTCFVRDGKPYCKRDYLRLF 109
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
GT CA C++ + VMRA+N +YH++CF C C+ + GD F L ++ + C+ D+
Sbjct: 110 GTK--CAKCSQGFTKNDFVMRARNKIYHIDCFRCVACSRQLIPGDEFALREDGLFCKADH 167
Query: 173 E 173
E
Sbjct: 168 E 168
>gi|224994808|ref|NP_001139341.1| apterous a [Tribolium castaneum]
gi|224459212|gb|ACN43341.1| apterous a [Tribolium castaneum]
Length = 465
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 69/117 (58%), Gaps = 8/117 (6%)
Query: 60 RITERFLLKALDLFWHEDCLKCGCCDCRL---GEVGSTLYQKANLILCKRDYLRLFGTTG 116
RIT+RF L+A+D WH CL+C C CR GE+ T + + I CK+DY RLFG
Sbjct: 136 RITDRFYLQAVDRRWHASCLQC--CQCRNTLDGEI--TCFSRDGNIYCKKDYYRLFGMK- 190
Query: 117 YCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
CA C I + E+VMRA++ V+H+ CF+C CN GD F + D +LC +E
Sbjct: 191 RCARCQATIISSELVMRARDLVFHVHCFSCAVCNSPLTKGDHFGMRDGAVLCRLHFE 247
>gi|328707561|ref|XP_003243430.1| PREDICTED: insulin gene enhancer protein isl-1-like isoform 2
[Acyrthosiphon pisum]
Length = 487
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 69/124 (55%), Gaps = 4/124 (3%)
Query: 51 LKECASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYL 109
L C CG I ++++LK A DL WH CLKC C L E T + + CK DY+
Sbjct: 73 LSLCVGCGGAINDQYILKVAPDLEWHAACLKCAECHQFLDE-HCTCFVRDGKTYCKLDYV 131
Query: 110 RLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCE 169
RLFGT C C E+VMRAK VYH+ECF C C+ + GD F L D+ +LC+
Sbjct: 132 RLFGTK--CDKCNLSFDRTELVMRAKTKVYHMECFRCNACSRQLIPGDEFALRDDTLLCK 189
Query: 170 YDYE 173
D++
Sbjct: 190 QDHD 193
>gi|328707559|ref|XP_001944557.2| PREDICTED: insulin gene enhancer protein isl-1-like isoform 1
[Acyrthosiphon pisum]
Length = 513
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 69/124 (55%), Gaps = 4/124 (3%)
Query: 51 LKECASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYL 109
L C CG I ++++LK A DL WH CLKC C L E T + + CK DY+
Sbjct: 99 LSLCVGCGGAINDQYILKVAPDLEWHAACLKCAECHQFLDE-HCTCFVRDGKTYCKLDYV 157
Query: 110 RLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCE 169
RLFGT C C E+VMRAK VYH+ECF C C+ + GD F L D+ +LC+
Sbjct: 158 RLFGTK--CDKCNLSFDRTELVMRAKTKVYHMECFRCNACSRQLIPGDEFALRDDTLLCK 215
Query: 170 YDYE 173
D++
Sbjct: 216 QDHD 219
>gi|327282632|ref|XP_003226046.1| PREDICTED: LIM/homeobox protein Lhx5-like [Anolis carolinensis]
Length = 400
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 66/120 (55%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C C L E + + + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRRFG 61
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C + I ++V +A+ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 62 TK--CAGCAQGISPSDLVRKARGKVFHLNCFTCMVCNKQLSTGEELYIIDENKFVCKEDY 119
>gi|410922082|ref|XP_003974512.1| PREDICTED: LIM homeobox transcription factor 1-beta-like [Takifugu
rubripes]
Length = 375
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 80/159 (50%), Gaps = 10/159 (6%)
Query: 18 FDSLRLATHYQVDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHED 77
D ++L H + T G + G C C + I++RFL++ D WHE+
Sbjct: 2 LDGIKLEDH-----PLRSGQATLGVMLGSDCHHPSVCEGCQRPISDRFLMRVNDSSWHEE 56
Query: 78 CLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNN 137
CL+C C L ++ Y + + CK DY +LF T C+ C + I E VMRA
Sbjct: 57 CLQCTVCQQPLT---TSCYFRERKLYCKHDYQQLFATK--CSGCMEKIAPTEFVMRALEC 111
Query: 138 VYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQ 176
VYHL CF C C+ + GD F L + ++LC++DYE +
Sbjct: 112 VYHLNCFCCCVCDRQLRKGDEFVLKEGQLLCKFDYEREK 150
>gi|432092293|gb|ELK24915.1| LIM/homeobox protein Lhx9, partial [Myotis davidii]
Length = 420
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 67/121 (55%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I +R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 12 CAGCGGKIADRYYLLAVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF 69
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA++ VYHL CF C C+ GD F + D + C +
Sbjct: 70 -SVQRCARCHLGISASEMVMRARDAVYHLSCFTCSTCSKTLATGDHFGMKDGLVYCRAHF 128
Query: 173 E 173
E
Sbjct: 129 E 129
>gi|74187870|dbj|BAE24561.1| unnamed protein product [Mus musculus]
Length = 406
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 66/120 (55%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +R LL LD WH C++C C C L E + + + CK D+ R FG
Sbjct: 4 CAGCKRPILDRLLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFG 60
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C + I ++V RA++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 61 TK--CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
>gi|357611533|gb|EHJ67530.1| lim homeobox protein [Danaus plexippus]
Length = 481
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 68/124 (54%), Gaps = 6/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +C C + I +R++LK D WH CL+C C L + + N + C D+ +
Sbjct: 133 IPKCGGCHEMIVDRYVLKVSDRTWHAGCLRCVECRAMLS---GKCFARNNQLYCTEDFFK 189
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
+GT CA C + IP ++V RA+ +VYHL CFAC C GD FYL D K++C+
Sbjct: 190 RYGTK--CAGCGQGIPPTQVVRRAQAHVYHLRCFACAACARTLNTGDEFYLMEDGKLVCK 247
Query: 170 YDYE 173
DYE
Sbjct: 248 PDYE 251
>gi|341889206|gb|EGT45141.1| CBN-LIN-11 protein [Caenorhabditis brenneri]
Length = 372
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 89/170 (52%), Gaps = 16/170 (9%)
Query: 24 ATHYQVDLTTD----ASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCL 79
AT +D + D SS TQ L SGG ECA+C + I +R++ L WH+ CL
Sbjct: 43 ATFLLLDSSADTWMMPSSTTQSHLTE-ISGG-NECAACAQPILDRYVFTVLGKCWHQSCL 100
Query: 80 KCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVY 139
+C CDCR + T + K LILCK DY R +G CA C + ++V RA++ V+
Sbjct: 101 RC--CDCR-APMSMTCFSKDGLILCKSDYSRRYG--HRCAGCDGKLEKEDLVRRARDKVF 155
Query: 140 HLECFACQQCNHRFCVGDRFYLCD-NKILCEYDYEERQVFANIAYNPSSL 188
H+ CF C C GD+ Y+ + N+ +C+ D++ A P+S+
Sbjct: 156 HIRCFQCSVCQRLLDTGDQLYIMEGNRFMCQNDFQT----ATKTSTPTSM 201
>gi|444723048|gb|ELW63713.1| LIM/homeobox protein Lhx5 [Tupaia chinensis]
Length = 610
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 7/150 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C+C+ + + + + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQC--CECKT-NLSEKCFSREGKLYCKNDFFRRFG 61
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C + I ++V +A++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 62 TK--CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDY 119
Query: 173 EERQVFANIAYNPSSLAHLRRQVTLQVLWI 202
+ N S +++V W+
Sbjct: 120 LSSSSLKEGSLN-SGFRRPKQEVRSHPAWL 148
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 68/170 (40%), Gaps = 53/170 (31%)
Query: 53 ECASCGKRITERFLL-KALDLFWHEDCLKCGCCDCRLGEVGSTLYQ-KANLILCKRDYL- 109
+CA C + I+ L+ KA +H +C C C+ +L G LY N +CK DYL
Sbjct: 63 KCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQL-STGEELYVIDENKFVCKDDYLS 121
Query: 110 ----------------------------------------------RLFGTTGYCAACTK 123
R FGT CA C +
Sbjct: 122 SSSLKEGSLNSGFRRPKQEVRSHPAWLYGFQSFVELRAEFALSSPGRRFGTK--CAGCAQ 179
Query: 124 VIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
I ++V +A++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 180 GISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDY 229
>gi|431916082|gb|ELK16336.1| LIM homeobox transcription factor 1-alpha [Pteropus alecto]
Length = 374
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 85/166 (51%), Gaps = 17/166 (10%)
Query: 18 FDSLRLATHYQVDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHED 77
D L++ ++ + T AS + L C C + I++RFLL+ D FWHE+
Sbjct: 2 LDGLKMEENFPSAIETSASFSS-----------LLVCEGCQRVISDRFLLRLNDSFWHEE 50
Query: 78 CLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNN 137
C++C C L +T + + + CK DY +LF C C + I E VMRA+
Sbjct: 51 CVQCASCKEPLE---TTCFYRDKKLYCKCDYEKLFAVK--CGGCFEAIAPNEFVMRAQKT 105
Query: 138 VYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFANIA 182
VYHL CF C C + GD F L D ++LC DYE ER++ + ++
Sbjct: 106 VYHLGCFCCCVCERQLQKGDEFVLKDGQLLCRGDYEKERELLSLVS 151
>gi|47224946|emb|CAG06516.1| unnamed protein product [Tetraodon nigroviridis]
Length = 408
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 66/120 (55%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C C L E + + + CK D+ R FG
Sbjct: 4 CAGCERPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGRLYCKNDFFRRFG 60
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T C C + I ++V RA++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 61 TK--CGGCFQGISPNDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
>gi|410930167|ref|XP_003978470.1| PREDICTED: LIM/homeobox protein Lhx1-like [Takifugu rubripes]
Length = 408
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 66/120 (55%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C C L E + + + CK D+ R FG
Sbjct: 4 CAGCERPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGRLYCKNDFFRRFG 60
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T C C + I ++V RA++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 61 TK--CGGCFQGISPNDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
>gi|56185681|gb|AAV84105.1| apterous [Euprymna scolopes]
Length = 423
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 72/132 (54%), Gaps = 2/132 (1%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA CG ITER+ L + WH +CLKC C L + + Y++ C+ DY RLF
Sbjct: 92 CAGCGDLITERYYLNVANNAWHFNCLKCYECKSTL-DTERSCYERMGNYYCRDDYQRLF- 149
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
+T CA C I + ++VMRA+N+VYHL CF C CN GD F L ++ + C+ YE
Sbjct: 150 STQRCARCNMGIQSTDLVMRARNHVYHLTCFTCFTCNKALQAGDTFGLREHLVYCQVHYE 209
Query: 174 ERQVFANIAYNP 185
IA +P
Sbjct: 210 NSYHAEYIALSP 221
>gi|426223096|ref|XP_004023228.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx6-like
[Ovis aries]
Length = 370
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 73/146 (50%), Gaps = 7/146 (4%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 66 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 125
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAAC----TKVIPAFEMVMRAKNNVYHLECFACQ 147
S Y K I CK DY FGT CA C T I A + V RA+ N YHL CFAC
Sbjct: 126 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQSTPEIYASDWVRRARGNAYHLACFACF 182
Query: 148 QCNHRFCVGDRFYLCDNKILCEYDYE 173
C + G+ F L + K+LC Y+
Sbjct: 183 SCKRQLSTGEEFGLVEEKVLCRIHYD 208
>gi|405973461|gb|EKC38176.1| LIM/homeobox protein Awh [Crassostrea gigas]
Length = 278
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 70/122 (57%), Gaps = 5/122 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
C CG ITERFLL WH CL+C C C++G E ++ + + + I C+ DY R F
Sbjct: 45 CYGCGDLITERFLLHVNGQAWHVGCLRC--CICQIGLERQTSCFIREDNIYCRNDYSREF 102
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
GT CA C + I + + V RA+ NVYHL CFAC C + G+ F L +++LC+ Y
Sbjct: 103 GTK--CAKCYRTIQSTDWVRRARENVYHLACFACDSCKRQLSTGEEFALHGDRVLCKSHY 160
Query: 173 EE 174
E
Sbjct: 161 ME 162
>gi|281348858|gb|EFB24442.1| hypothetical protein PANDA_002084 [Ailuropoda melanoleuca]
Length = 368
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 77/142 (54%), Gaps = 6/142 (4%)
Query: 42 ALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANL 101
A G A C C + I++RFLL+ D FWHE C++C C L +T + +
Sbjct: 9 AAVGRAVSPKSVCEGCQRVISDRFLLRLNDSFWHEQCVQCASCKEPLE---TTCFYRDKK 65
Query: 102 ILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYL 161
+ CK DY +LF C C + + E VMRA+ +VYHL CF C C + GD F L
Sbjct: 66 LYCKYDYEKLFAVK--CGGCFEAVAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVL 123
Query: 162 CDNKILCEYDYE-ERQVFANIA 182
+ ++LC+ DYE ER++ + ++
Sbjct: 124 KEGQLLCKGDYEKERELLSLVS 145
>gi|76667074|dbj|BAE45356.1| LIM homeodomain type transcription factor Lhx2 [Danio rerio]
Length = 395
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 68/121 (56%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK +Y R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFDKDGSIYCKEEYYRRF 110
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA++ VYHL CF C CN GD + D+ + C +
Sbjct: 111 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHVGMKDSLVYCRLHF 169
Query: 173 E 173
E
Sbjct: 170 E 170
>gi|312385468|gb|EFR29960.1| hypothetical protein AND_00755 [Anopheles darlingi]
Length = 339
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 70/123 (56%), Gaps = 3/123 (2%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
K C C ++IT+R++ + WH CL+C C C L S + + + CK DY++
Sbjct: 72 KACGGCSEQITDRYIFEVNGASWHGSCLRCSVCYCPLERQASCFLRDGD-VYCKADYIKK 130
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
F T+ CA C + I A + V RA+ V+HL CFAC C + G++F +C++++LC+
Sbjct: 131 FKTS--CAKCARSISATDWVRRAREYVFHLACFACDSCGRQLSTGEQFAICEDRVLCKTH 188
Query: 172 YEE 174
Y E
Sbjct: 189 YME 191
>gi|405975209|gb|EKC39790.1| LIM/homeobox protein Lhx5 [Crassostrea gigas]
Length = 471
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 69/121 (57%), Gaps = 6/121 (4%)
Query: 53 ECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLF 112
+CA+C + I +RFLL LD WH C++C C L + + + + C+ D+ R F
Sbjct: 3 QCAACDRPILDRFLLNVLDRAWHAKCVQCSDCKTTLTD---KCFSRDGKLFCRNDFFRRF 59
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYD 171
GT CA CT+ I ++V RA+N V+HL+CF C C + G+ Y+ D N+ +C+ D
Sbjct: 60 GTK--CAGCTQGISPNDLVRRARNKVFHLKCFTCIICRKQLSTGEELYVMDENRFICKED 117
Query: 172 Y 172
Y
Sbjct: 118 Y 118
>gi|326924822|ref|XP_003208624.1| PREDICTED: LOW QUALITY PROTEIN: LIM homeobox transcription factor
1-alpha-like [Meleagris gallopavo]
Length = 367
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 74/130 (56%), Gaps = 6/130 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C C + I +RFLL+ D WHE C++C C L +T + + + CK DY +LF
Sbjct: 22 CEGCQRVIADRFLLRLNDSLWHERCVQCTSCKEPLH---TTCFYRDKKLYCKLDYEKLFA 78
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
CA C + I E+VMRA+ +VYHL CF C C R GD F L + ++LC+ DYE
Sbjct: 79 VK--CAGCLESIAPSELVMRAQQSVYHLHCFCCCVCERRLQKGDEFVLKEGQLLCKGDYE 136
Query: 174 -ERQVFANIA 182
ER++ + ++
Sbjct: 137 KERELLSLVS 146
>gi|334327218|ref|XP_001378455.2| PREDICTED: LIM/homeobox protein Lhx5-like [Monodelphis domestica]
Length = 303
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 67/120 (55%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C C L E + + + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRRFG 61
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C + I ++V +A++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 62 TK--CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYIIDENKFVCKEDY 119
>gi|115727487|ref|XP_782032.2| PREDICTED: LIM/homeobox protein Lhx9 [Strongylocentrotus
purpuratus]
Length = 474
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 70/126 (55%), Gaps = 2/126 (1%)
Query: 48 SGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 107
+G CA CG RI +RF L A D WH CL+C C+ +L S ++ N I CK D
Sbjct: 48 AGSPAVCAGCGGRICDRFYLLAADRQWHTQCLQCCECNVQLDSELSCFAKEGN-IYCKED 106
Query: 108 YLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKIL 167
YL+ +G CA C I + EMVMRA+ VYHL CF+C CN GD + + +N +
Sbjct: 107 YLKRYGIK-KCARCHVGIESHEMVMRARELVYHLACFSCAVCNLELHTGDYYGMRENLVY 165
Query: 168 CEYDYE 173
C+ YE
Sbjct: 166 CQLHYE 171
>gi|47217859|emb|CAG02352.1| unnamed protein product [Tetraodon nigroviridis]
Length = 235
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 89/175 (50%), Gaps = 11/175 (6%)
Query: 29 VDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCR 87
VD+ +S + G C CG +I ++++L+ + DL WH CLKC C
Sbjct: 2 VDIIFSSSFLGDMGDHSKKKQGFAMCVGCGSQIHDQYILRVSPDLEWHAACLKCAECSQY 61
Query: 88 LGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQ 147
L E T + + CKRDY+RLFG CA C + ++VMRA+++VYH+ECF C
Sbjct: 62 LDET-CTCFVRDGKTYCKRDYVRLFGIK--CAKCNLGFSSSDLVMRARDHVYHIECFRCS 118
Query: 148 QCNHRFCVGDRFYLCDNKILCEYDYE---ERQVFANIAYNPSSLAHLRRQVTLQV 199
C+ + GD F L + ++LC D+ ER + A +P S H+ L +
Sbjct: 119 VCSRQLLPGDEFSLREEELLCRADHSLLLER----SSAGSPISPGHIHSNRPLHL 169
>gi|449268595|gb|EMC79451.1| LIM/homeobox protein Lhx2 [Columba livia]
Length = 416
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 74/151 (49%), Gaps = 24/151 (15%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRGG 110
Query: 113 G----------------TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVG 156
G + CA C I A EMVMRA++ VYHL CF C CN G
Sbjct: 111 GMHLSPSLLAVLFYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTG 170
Query: 157 DRFYLCDNKILCEYDYE-----ERQVFANIA 182
D F + DN + C +E E QV N A
Sbjct: 171 DHFGMKDNLVYCRLHFETLIQGEYQVHFNHA 201
>gi|390356846|ref|XP_785118.3| PREDICTED: LIM/homeobox protein Awh-like [Strongylocentrotus
purpuratus]
Length = 335
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 71/124 (57%), Gaps = 4/124 (3%)
Query: 52 KECASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ CA CGK I +R+LL+ L WH CL+C CD L S ++ N + C++ Y R
Sbjct: 35 ESCAGCGKAIIDRYLLRIGRGLSWHSSCLRCLECDESLSSHQSCYFKDQN-VFCRKCYSR 93
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
FGT CA C + I A + V RA+ N+YHL CFAC C + G+ F + +N++LC+
Sbjct: 94 EFGTK--CARCLRNIDASDWVRRARENIYHLACFACDNCKRQLSTGEEFAMIENRVLCKS 151
Query: 171 DYEE 174
Y E
Sbjct: 152 HYLE 155
>gi|224493106|sp|A2PZF9.1|LHX9_RANRU RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
9
gi|124377598|dbj|BAF46216.1| LIM homeobox gene 9 alpha protein [Glandirana rugosa]
Length = 379
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 78/147 (53%), Gaps = 12/147 (8%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF 110
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDN-------- 164
+ CA C I A E+VMRA+ +VYHL CF C CN GD F + +N
Sbjct: 111 -SVQRCARCHLGISASEIVMRARESVYHLSCFTCTTCNKTLSTGDHFGMKENLVYRRAHF 169
Query: 165 KILCEYDYEERQVFANIAYNPSSLAHL 191
++L + D+ + + ++ L+ L
Sbjct: 170 ELLVQGDFHSQLNYTELSAKGGGLSAL 196
>gi|123981310|gb|ABM82484.1| ISL1 transcription factor, LIM/homeodomain, (islet-1) [synthetic
construct]
Length = 349
Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 80/145 (55%), Gaps = 4/145 (2%)
Query: 54 CASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLF 112
C CG +I +R++L+ + DL WH CLKC C+ L E T + + CKRDY+RL+
Sbjct: 17 CVGCGNQIHDRYILRVSPDLEWHAACLKCAECNQYLDE-SCTCFVRDGKTYCKRDYIRLY 75
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
G CA C+ + VMRA++ VYH+ECF C C+ + GD F L ++ + C D+
Sbjct: 76 GIK--CAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADH 133
Query: 173 EERQVFANIAYNPSSLAHLRRQVTL 197
+ + + A +P S H R + +
Sbjct: 134 DVVERASLGAGDPLSPLHPARPLQM 158
>gi|339252354|ref|XP_003371400.1| insulin protein enhancer protein ISL-1 [Trichinella spiralis]
gi|316968379|gb|EFV52660.1| insulin protein enhancer protein ISL-1 [Trichinella spiralis]
Length = 1751
Score = 93.2 bits (230), Expect = 6e-17, Method: Composition-based stats.
Identities = 51/123 (41%), Positives = 67/123 (54%), Gaps = 8/123 (6%)
Query: 54 CASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCR--LGEVGSTLYQKANLILCKRDYLR 110
C CG I ++++L+ + DL WH CLKC DCR L E T + + CK DY+R
Sbjct: 1318 CNGCGHEILDQYILRVSPDLEWHAACLKC--VDCRQFLDET-CTCFVRDGKPYCKLDYVR 1374
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
LFG C+ C +V + VMRAKNN+YH+ CF C C GD F L + C+
Sbjct: 1375 LFGVR--CSKCGEVFDRNDYVMRAKNNLYHISCFKCVVCTRPLLPGDEFALRHIALYCKA 1432
Query: 171 DYE 173
DYE
Sbjct: 1433 DYE 1435
>gi|410903918|ref|XP_003965440.1| PREDICTED: LIM/homeobox protein Lhx5-like [Takifugu rubripes]
Length = 396
Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C+C L E + + + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHAKCVQCCECNCNLTE---KCFSRDGKLYCKMDFFRRFG 61
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C + I ++V +A++ V+HL CF C CN + G+ Y+ D NK +C+ D+
Sbjct: 62 TK--CAGCLQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKEDF 119
>gi|348535371|ref|XP_003455174.1| PREDICTED: LIM/homeobox protein Lhx5-like [Oreochromis niloticus]
Length = 396
Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 68/120 (56%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C+C L E + + + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHAKCVQCCECNCNLTE---KCFSRDGKLYCKIDFFRRFG 61
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C + I ++V +A++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 62 TK--CAGCLQGISPNDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDY 119
>gi|158296017|ref|XP_001237835.2| AGAP006537-PA [Anopheles gambiae str. PEST]
gi|157016310|gb|EAU76621.2| AGAP006537-PA [Anopheles gambiae str. PEST]
Length = 271
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 71/124 (57%), Gaps = 3/124 (2%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
K C SC + IT+R++ + WH CL+C C C L E + Y + + CK DY++
Sbjct: 5 FKTCGSCAEPITDRYIFEVNGSAWHGSCLRCTVCFCPL-ERQVSCYLRDGDMYCKSDYIK 63
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
F T+ CA C + I A + V RA+ V+HL CFAC C + G++F +C++++LC+
Sbjct: 64 KFKTS--CAKCARSISATDWVRRAREYVFHLACFACDSCGRQLSTGEQFAICEDRVLCKT 121
Query: 171 DYEE 174
Y E
Sbjct: 122 HYME 125
>gi|301609265|ref|XP_002934210.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Xenopus
(Silurana) tropicalis]
Length = 380
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 86/169 (50%), Gaps = 15/169 (8%)
Query: 18 FDSLRLATHYQVDLTTDASSVTQGALAGGASGGLKE---CASCGKRITERFLLKALDLFW 74
D L++ + Q + T A AL+ G+++ C C + I +RFLL+ D W
Sbjct: 2 LDGLKMEENIQNVIETSA------ALSSLFGRGMEQKWVCEGCERVICDRFLLRISDSLW 55
Query: 75 HEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRA 134
HE C +C C C+ S Y+ L C+ DY +LF C C I E VMRA
Sbjct: 56 HEQCAQC--CTCKEPLESSCFYRDKKL-YCRNDYEKLFAVK--CGTCLDTITPSEFVMRA 110
Query: 135 KNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFANIA 182
+ NVYHL CF C C+ + GD F L D ++LC+ DYE ER + + ++
Sbjct: 111 QKNVYHLGCFCCCVCDRQLQKGDEFVLKDGQLLCKSDYERERDLLSLVS 159
>gi|328708271|ref|XP_001949712.2| PREDICTED: LIM/homeobox protein Awh-like [Acyrthosiphon pisum]
Length = 346
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 70/120 (58%), Gaps = 3/120 (2%)
Query: 53 ECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLF 112
+C C IT+RFLLK D WH CL+C C+ L E + + K + I C++DY R F
Sbjct: 60 QCRGCSDPITDRFLLKVSDKIWHVSCLRCCVCNLVL-EDEPSCFIKDDSIYCRQDYARSF 118
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
GT C+ C+K I A V +A+++VYHL CF C C+ + G+ F L + ++LC+ Y
Sbjct: 119 GTV--CSKCSKGISASHWVRKARDHVYHLACFRCDACDRQLNTGEEFALHEGRVLCKPHY 176
>gi|194758260|ref|XP_001961380.1| GF13843 [Drosophila ananassae]
gi|190622678|gb|EDV38202.1| GF13843 [Drosophila ananassae]
Length = 469
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 68/122 (55%), Gaps = 2/122 (1%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L ECA CG++I +RF L A++ WH CL+C C L E S+ Y + I CK DY
Sbjct: 145 LDECAGCGRQIQDRFYLSAVEKRWHASCLQCYACRQPL-ERESSCYSRDGNIYCKNDYYS 203
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
FGT C+ C I + E+VMRA+N V+H+ CF C C+ GD++ + D I C
Sbjct: 204 FFGTR-RCSRCLASISSNELVMRARNLVFHVNCFCCTVCHTPLTKGDQYGIIDALIYCRT 262
Query: 171 DY 172
Y
Sbjct: 263 HY 264
>gi|326205389|dbj|BAJ84073.1| insulin gene enhancer protein ISL-2 [Homo sapiens]
Length = 189
Score = 92.8 bits (229), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 80/147 (54%), Gaps = 8/147 (5%)
Query: 50 GLKECASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDY 108
G C CG +I ++F+L+ + DL WH CLKC C L E T + + CKRDY
Sbjct: 23 GTAMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDY 81
Query: 109 LRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILC 168
+RLFG CA C + ++VMRA+++VYH+ECF C C+ + GD F L ++++LC
Sbjct: 82 VRLFGIK--CAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLC 139
Query: 169 EYDYE---ERQVFANIAYNPSSLAHLR 192
D+ ER A +P L R
Sbjct: 140 RADHGLLLERAA-AGSPRSPGPLPGAR 165
>gi|167859072|gb|ACA04471.1| Lhx2 [Strongylocentrotus purpuratus]
Length = 251
Score = 92.8 bits (229), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 70/126 (55%), Gaps = 2/126 (1%)
Query: 48 SGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 107
+G CA CG RI +RF L A D WH CL+C C+ +L S ++ N I CK D
Sbjct: 45 AGSPAVCAGCGGRICDRFYLLAADRQWHTQCLQCCECNVQLDSELSCFAKEGN-IYCKED 103
Query: 108 YLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKIL 167
YL+ +G CA C I + EMVMRA+ VYHL CF+C CN GD + + +N +
Sbjct: 104 YLKRYGIK-KCARCHVGIESHEMVMRARELVYHLACFSCAVCNLELHTGDYYGMRENLVY 162
Query: 168 CEYDYE 173
C+ YE
Sbjct: 163 CQLHYE 168
>gi|124377600|dbj|BAF46217.1| LIM homeobox gene 9 beta protein [Glandirana rugosa]
Length = 347
Score = 92.8 bits (229), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 78/147 (53%), Gaps = 12/147 (8%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF 110
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDN-------- 164
+ CA C I A E+VMRA+ +VYHL CF C CN GD F + +N
Sbjct: 111 -SVQRCARCHLGISASEIVMRARESVYHLSCFTCTTCNKTLSTGDHFGMKENLVYRRAHF 169
Query: 165 KILCEYDYEERQVFANIAYNPSSLAHL 191
++L + D+ + + ++ L+ L
Sbjct: 170 ELLVQGDFHSQLNYTELSAKGGGLSAL 196
>gi|449479889|ref|XP_004177057.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx1
[Taeniopygia guttata]
Length = 419
Score = 92.8 bits (229), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 66/120 (55%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C C L E + + + CK D+ R FG
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFG 60
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C + I ++V RA++ V+HL CF C CN + G+ Y+ D NK + + DY
Sbjct: 61 TK--CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVDKEDY 118
>gi|395541258|ref|XP_003772563.1| PREDICTED: LIM/homeobox protein Lhx8-like [Sarcophilus harrisii]
Length = 365
Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 67/120 (55%), Gaps = 3/120 (2%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C+ C I +++LLK D++WH CL C C LG+ +T + K N I CK DYLR FG
Sbjct: 85 CSGCRLEILDKYLLKVNDMYWHMQCLCCSVCQTSLGK-HATCFIKDNTIFCKIDYLRKFG 143
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
T C C + + + + V +A+ VYHL CF C C + GD F L + K+LC Y+
Sbjct: 144 TC--CCGCGRYVCSSDWVQKARGYVYHLACFVCFSCKRQLSTGDEFALVEEKVLCRIHYD 201
>gi|195441498|ref|XP_002068546.1| GK20529 [Drosophila willistoni]
gi|194164631|gb|EDW79532.1| GK20529 [Drosophila willistoni]
Length = 275
Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 72/124 (58%), Gaps = 3/124 (2%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L+ CA+CG+ I++RF L+ WH CL+C C C L S Y + + CK DY +
Sbjct: 5 LRSCAACGEPISDRFFLEVGGCSWHAHCLRCCMCMCPLDRQQS-CYIRERQVYCKADYSK 63
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
FG C+ C + I A + V RA++ V+HL CFAC QC + G++F L D+++LC+
Sbjct: 64 NFGAK--CSKCCRGISASDWVRRARDLVFHLACFACDQCGRQLSTGEQFALMDDRVLCKA 121
Query: 171 DYEE 174
Y E
Sbjct: 122 HYLE 125
>gi|62461837|gb|AAX83055.1| LIM homeodomain protein [Danio rerio]
Length = 375
Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 81/153 (52%), Gaps = 6/153 (3%)
Query: 35 ASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGST 94
+ T G + G C C + I++RFL++ + WHE+CL+C C L ++
Sbjct: 14 SGQATLGVMLGTECHHQAVCEGCQRPISDRFLMRVNESSWHEECLQCAVCQQPLT---TS 70
Query: 95 LYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFC 154
Y + + CK DY +LF T C+ C + I E VMRA VYHL CF C C+ +
Sbjct: 71 CYFRERKLYCKYDYQQLFATK--CSGCLEKIAPTEFVMRALECVYHLNCFCCCVCDRQLR 128
Query: 155 VGDRFYLCDNKILCEYDYE-ERQVFANIAYNPS 186
GD F L D ++LC+ DYE E+ + +++ + S
Sbjct: 129 KGDEFVLKDGQLLCKSDYEREKDLLGSVSPDDS 161
>gi|309243111|ref|NP_001020338.2| LIM homeobox transcription factor 1, beta 1 [Danio rerio]
gi|48375211|gb|AAT42258.1| LIM homeodomain protein Lmx1b.1 [Danio rerio]
gi|190337176|gb|AAI62952.1| LIM homeobox transcription factor 1, beta 1 [Danio rerio]
gi|190338183|gb|AAI62932.1| LIM homeobox transcription factor 1, beta 1 [Danio rerio]
Length = 375
Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 81/153 (52%), Gaps = 6/153 (3%)
Query: 35 ASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGST 94
+ T G + G C C + I++RFL++ + WHE+CL+C C L ++
Sbjct: 14 SGQATLGVMLGTECHHQAVCEGCQRPISDRFLMRVNESSWHEECLQCAVCQQPLT---TS 70
Query: 95 LYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFC 154
Y + + CK DY +LF T C+ C + I E VMRA VYHL CF C C+ +
Sbjct: 71 CYFRERKLYCKYDYQQLFATK--CSGCLEKIAPTEFVMRALECVYHLNCFCCCVCDRQLR 128
Query: 155 VGDRFYLCDNKILCEYDYE-ERQVFANIAYNPS 186
GD F L D ++LC+ DYE E+ + +++ + S
Sbjct: 129 KGDEFVLKDGQLLCKSDYEREKDLLGSVSPDDS 161
>gi|124377604|dbj|BAF46219.1| LIM homeobox gene 9 delta protein [Glandirana rugosa]
Length = 312
Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 78/147 (53%), Gaps = 12/147 (8%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF 110
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDN-------- 164
+ CA C I A E+VMRA+ +VYHL CF C CN GD F + +N
Sbjct: 111 -SVQRCARCHLGISASEIVMRARESVYHLSCFTCTXCNKTLSTGDHFGMKENLVYRRAHF 169
Query: 165 KILCEYDYEERQVFANIAYNPSSLAHL 191
++L + D+ + + ++ L+ L
Sbjct: 170 ELLVQGDFHSQLNYTELSAKGGGLSAL 196
>gi|308097158|gb|ADO14133.1| ISL1 transcription factor [Notophthalmus viridescens]
Length = 349
Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 80/145 (55%), Gaps = 4/145 (2%)
Query: 54 CASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLF 112
C CG +I ++++L+ + DL WH CLKC C+ L E T + + CKRDY+RL+
Sbjct: 17 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDET-CTCFVRDGKTYCKRDYIRLY 75
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
G CA C + VMRA++ VYH+ECF+C C+ + GD F L ++ + C D+
Sbjct: 76 GIK--CAKCNIGFSKNDFVMRARSKVYHIECFSCVACSRQLIPGDEFALREDGLFCRADH 133
Query: 173 EERQVFANIAYNPSSLAHLRRQVTL 197
+ + + A +P S H R + +
Sbjct: 134 DVVERASLGAADPLSPLHPARPLQM 158
>gi|124377602|dbj|BAF46218.1| LIM homeobox gene 9 gamma protein [Glandirana rugosa]
Length = 331
Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 78/147 (53%), Gaps = 12/147 (8%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF 110
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDN-------- 164
+ CA C I A E+VMRA+ +VYHL CF C CN GD F + +N
Sbjct: 111 -SVQRCARCHLGISASEIVMRARESVYHLSCFTCTTCNKTLSTGDHFGMKENLVYRRAHF 169
Query: 165 KILCEYDYEERQVFANIAYNPSSLAHL 191
++L + D+ + + ++ L+ L
Sbjct: 170 ELLVQGDFHSQLNYTELSAKGGGLSAL 196
>gi|328925124|dbj|BAK19077.1| apterous B alpha [Bombyx mori]
Length = 349
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 69/129 (53%), Gaps = 4/129 (3%)
Query: 46 GASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILC 104
G+ G ECA CG +I +R+ L A+D WH CL+C C+CRL + T + + I C
Sbjct: 10 GSPGAPDECAGCGGKIQDRYYLLAVDRQWHGSCLRC--CECRLPLDTELTCFSRDGNIYC 67
Query: 105 KRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDN 164
K DY RLF C C I A E+VMRA++ VYHL CF C C + GD F +
Sbjct: 68 KEDYYRLF-CVKRCGRCCNGITANELVMRARDLVYHLNCFTCVACGTQLSKGDVFGMKGG 126
Query: 165 KILCEYDYE 173
+ C Y+
Sbjct: 127 LVYCRPHYD 135
>gi|351694748|gb|EHA97666.1| LIM/homeobox protein Lhx5 [Heterocephalus glaber]
Length = 402
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 68/120 (56%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C+C+ + + + + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQC--CECKT-NLSEKCFSREGKLYCKNDFFRRFG 61
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C + I ++V +A++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 62 TK--CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKEDY 119
>gi|47228451|emb|CAG05271.1| unnamed protein product [Tetraodon nigroviridis]
Length = 579
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 67/120 (55%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C C L E + + + CK D+ R FG
Sbjct: 164 CAGCERPILDRFLLNVLDRAWHAKCVQCCECSCNLTE---KCFSRDGKLYCKMDFFRRFG 220
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C + I ++V +A++ V+HL CF C CN + G+ Y+ D NK +C+ D+
Sbjct: 221 TK--CAGCLQGISPNDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKEDF 278
>gi|124377606|dbj|BAF46220.1| LIM homeobox gene 9 epsilon protein [Glandirana rugosa]
Length = 297
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 78/147 (53%), Gaps = 12/147 (8%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF 110
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDN-------- 164
+ CA C I A E+VMRA+ +VYHL CF C CN GD F + +N
Sbjct: 111 -SVQRCARCHLGISASEIVMRARESVYHLSCFTCTXCNKTLSTGDHFGMKENLVYRRAHF 169
Query: 165 KILCEYDYEERQVFANIAYNPSSLAHL 191
++L + D+ + + ++ L+ L
Sbjct: 170 ELLVQGDFHSQLNYTELSAKGGGLSAL 196
>gi|328705917|ref|XP_001945631.2| PREDICTED: LIM/homeobox protein Lhx5-like [Acyrthosiphon pisum]
Length = 555
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 67/123 (54%), Gaps = 6/123 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ CA C K I ++FLL LD WH +C+K C DC G + Y + ILCK D+ R
Sbjct: 114 MMSCAGCDKPIMDKFLLNVLDRAWHAECVK--CADCH-GTLSDKCYSRDGKILCKPDFYR 170
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFY-LCDNKILCE 169
+G C C + I ++V +A++ V+HL CF C C + G+ Y L DNK +C+
Sbjct: 171 RYGKK--CNGCAQGISPTDLVRKARDKVFHLNCFTCMICRKQLSTGEELYVLEDNKFICK 228
Query: 170 YDY 172
DY
Sbjct: 229 DDY 231
>gi|426384765|ref|XP_004058922.1| PREDICTED: insulin gene enhancer protein ISL-1 [Gorilla gorilla
gorilla]
Length = 393
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 80/145 (55%), Gaps = 4/145 (2%)
Query: 54 CASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLF 112
C CG +I ++++L+ + DL WH CLKC C+ L E T + + CKRDY+RL+
Sbjct: 17 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDE-SCTCFVRDGKTYCKRDYIRLY 75
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
G CA C+ + VMRA++ VYH+ECF C C+ + GD F L ++ + C D+
Sbjct: 76 GIK--CAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADH 133
Query: 173 EERQVFANIAYNPSSLAHLRRQVTL 197
+ + + A +P S H R + +
Sbjct: 134 DVVERASLGAGDPLSPLHPARPLQM 158
>gi|348555669|ref|XP_003463646.1| PREDICTED: insulin gene enhancer protein ISL-2-like [Cavia
porcellus]
Length = 371
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 72/124 (58%), Gaps = 4/124 (3%)
Query: 50 GLKECASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDY 108
G C CG +I ++F+L+ + DL WH CLKC C L E T + + CKRDY
Sbjct: 23 GTAMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDY 81
Query: 109 LRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILC 168
RLFG CA C + ++VMRA+++V+H+ECF C C+ + GD F L ++++LC
Sbjct: 82 ARLFGIK--CAKCQVGFSSSDLVMRARDSVFHVECFRCAVCSRQLLPGDEFSLREHELLC 139
Query: 169 EYDY 172
D+
Sbjct: 140 RADH 143
>gi|380027052|ref|XP_003697250.1| PREDICTED: LIM/homeobox protein Lhx9-like [Apis florea]
Length = 390
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 72/141 (51%), Gaps = 8/141 (5%)
Query: 37 SVTQGALAGGASG---GLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGS 93
+V+ L GG + G+ C CG+ I ER+ L+A D WH CL+C C CR+
Sbjct: 18 AVSNRQLGGGENNNTDGVLGCGGCGREIAERWYLRAADRAWHCGCLRC--CHCRVPLAAE 75
Query: 94 -TLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHR 152
T + + I CK DY RLF G C+ C I A E+VMRA++ VYH+ CF C C
Sbjct: 76 LTCFARDGNIYCKEDYYRLF--AGRCSRCRAGISATELVMRARDLVYHVACFTCASCGTP 133
Query: 153 FCVGDRFYLCDNKILCEYDYE 173
GD F D + C YE
Sbjct: 134 LNKGDHFGQRDGLVYCRPHYE 154
>gi|301616969|ref|XP_002937919.1| PREDICTED: LIM/homeobox protein LMX-1.2-like isoform 2 [Xenopus
(Silurana) tropicalis]
Length = 393
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 80/159 (50%), Gaps = 10/159 (6%)
Query: 18 FDSLRLATHYQVDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHED 77
DS+++ H + T G L G C C + I++RFL++ + WHE+
Sbjct: 25 LDSIKMEDH-----PLRTGTATLGVLLGSECQHQAVCEGCQRPISDRFLMRVNEASWHEE 79
Query: 78 CLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNN 137
CL+C C L ++ Y + + CK+DY +LF C+ C + I E VMRA
Sbjct: 80 CLQCTVCQQPLT---TSCYFRDRKLFCKQDYQQLFA--AKCSGCMEKIAPTEFVMRALEC 134
Query: 138 VYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQ 176
VYHL CF C C + GD F L + ++LC+ DYE+ +
Sbjct: 135 VYHLSCFCCCVCERQLRKGDEFVLKEGQLLCKSDYEKEK 173
>gi|432861700|ref|XP_004069695.1| PREDICTED: insulin gene enhancer protein isl-2a-like [Oryzias
latipes]
Length = 358
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 78/146 (53%), Gaps = 4/146 (2%)
Query: 29 VDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCR 87
VD+ + S + G+ C CG +I ++++L+ + DL WH CLKC C+
Sbjct: 2 VDILLNTSFLDDMGDHSKKKSGIAMCVGCGSQIHDQYILRVSPDLEWHAACLKCAECNQY 61
Query: 88 LGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQ 147
L E T + + CKRDY RLFG CA C + ++VMRA+ VYH+ECF C
Sbjct: 62 LDET-CTCFVRDGKTYCKRDYARLFGIK--CAKCNTGFCSSDLVMRAREKVYHMECFRCS 118
Query: 148 QCNHRFCVGDRFYLCDNKILCEYDYE 173
C+ GD F L ++++LC +++
Sbjct: 119 VCSRHLLPGDEFSLREDELLCRANHD 144
>gi|426247330|ref|XP_004017439.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx5 [Ovis
aries]
Length = 386
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 68/120 (56%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C+C+ + + + + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQC--CECKT-NLSEKCFSREGKLYCKNDFFRRFG 61
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C + I ++V +A++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 62 TK--CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDY 119
>gi|348551170|ref|XP_003461403.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx5-like
[Cavia porcellus]
Length = 404
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 68/120 (56%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C+C+ + + + + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQC--CECKT-NLSEKCFSREGKLYCKNDFFRRFG 61
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C + I ++V +A++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 62 TK--CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDY 119
>gi|156120769|ref|NP_001095531.1| LIM/homeobox protein Lhx5 [Bos taurus]
gi|151557071|gb|AAI50044.1| LHX5 protein [Bos taurus]
gi|296478515|tpg|DAA20630.1| TPA: LIM homeobox protein 5 [Bos taurus]
Length = 402
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 68/120 (56%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C+C+ + + + + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQC--CECKT-NLSEKCFSREGKLYCKNDFFRRFG 61
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C + I ++V +A++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 62 TK--CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDY 119
>gi|395833990|ref|XP_003790000.1| PREDICTED: LIM/homeobox protein Lhx5 [Otolemur garnettii]
Length = 402
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 68/120 (56%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C+C+ + + + + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQC--CECKT-NLSEKCFSREGKLYCKNDFFRRFG 61
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C + I ++V +A++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 62 TK--CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDY 119
>gi|321454678|gb|EFX65839.1| hypothetical protein DAPPUDRAFT_65174 [Daphnia pulex]
Length = 291
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 72/132 (54%), Gaps = 2/132 (1%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C CG +IT+R+ L A++ WH +CL+CG C R + + + + + I C+ DY RLFG
Sbjct: 18 CGGCGFKITDRYYLVAVERAWHSECLRCGECR-RPLDTALSCFSRQSRIYCRDDYYRLFG 76
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
C C + + E+VMRA++ V+HL CF C CN GD F + D + C YE
Sbjct: 77 VR-RCNRCCLPLGSNELVMRARDAVFHLACFTCAACNQPLAKGDIFGMRDGIVYCRLHYE 135
Query: 174 ERQVFANIAYNP 185
Q + + + P
Sbjct: 136 MLQHPSTLTFFP 147
>gi|301616967|ref|XP_002937918.1| PREDICTED: LIM/homeobox protein LMX-1.2-like isoform 1 [Xenopus
(Silurana) tropicalis]
Length = 400
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 80/159 (50%), Gaps = 10/159 (6%)
Query: 18 FDSLRLATHYQVDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHED 77
DS+++ H + T G L G C C + I++RFL++ + WHE+
Sbjct: 25 LDSIKMEDH-----PLRTGTATLGVLLGSECQHQAVCEGCQRPISDRFLMRVNEASWHEE 79
Query: 78 CLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNN 137
CL+C C L ++ Y + + CK+DY +LF C+ C + I E VMRA
Sbjct: 80 CLQCTVCQQPLT---TSCYFRDRKLFCKQDYQQLFA--AKCSGCMEKIAPTEFVMRALEC 134
Query: 138 VYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQ 176
VYHL CF C C + GD F L + ++LC+ DYE+ +
Sbjct: 135 VYHLSCFCCCVCERQLRKGDEFVLKEGQLLCKSDYEKEK 173
>gi|74355157|gb|AAI03939.1| LIM homeobox 6 [Homo sapiens]
Length = 362
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 72/142 (50%), Gaps = 4/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 48 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 107
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL FAC C
Sbjct: 108 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHL-AFACFSCKR 163
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 164 QLSTGEEFGLVEEKVLCRIHYD 185
>gi|345790894|ref|XP_543409.3| PREDICTED: LIM/homeobox protein Lhx5 [Canis lupus familiaris]
Length = 402
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 68/120 (56%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C+C+ + + + + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQC--CECKT-NLSEKCFSREGKLYCKNDFFRRFG 61
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C + I ++V +A++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 62 TK--CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDY 119
>gi|291240697|ref|XP_002740254.1| PREDICTED: LIM class homeodomain transcription factor, Lhx6/8
subclass-like [Saccoglossus kowalevskii]
Length = 283
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 68/121 (56%), Gaps = 3/121 (2%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C C I +R+LLK WH CL+C C LG S + K + I CK DY+R FG
Sbjct: 22 CLGCTSPIQDRYLLKVGTRSWHVRCLRCCICQTGLGGQQS-CFTKDDNIYCKMDYIRQFG 80
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
T C+ C + I + + V +AKN+VYHL CFAC C + G+ F + +NK+LC+ Y
Sbjct: 81 TK--CSRCMRNIQSNDWVRKAKNHVYHLACFACDNCKRQLSTGEEFAMQENKVLCKTHYL 138
Query: 174 E 174
E
Sbjct: 139 E 139
>gi|344295258|ref|XP_003419329.1| PREDICTED: LIM/homeobox protein Lhx5-like [Loxodonta africana]
Length = 402
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 68/120 (56%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C+C+ + + + + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQC--CECKT-NLSEKCFSREGKLYCKNDFFRRFG 61
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C + I ++V +A++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 62 TK--CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDY 119
>gi|338727662|ref|XP_001915147.2| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx5-like
[Equus caballus]
Length = 403
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 68/120 (56%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C+C+ + + + + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQC--CECK-ANLSEKCFSREGKLYCKNDFFRRFG 61
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C + I ++V +A++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 62 TK--CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDY 119
>gi|109098848|ref|XP_001111705.1| PREDICTED: LIM/homeobox protein Lhx5-like [Macaca mulatta]
gi|296213013|ref|XP_002753087.1| PREDICTED: LIM/homeobox protein Lhx5 [Callithrix jacchus]
gi|297693055|ref|XP_002823842.1| PREDICTED: LIM/homeobox protein Lhx5 [Pongo abelii]
gi|402887767|ref|XP_003907254.1| PREDICTED: LIM/homeobox protein Lhx5 [Papio anubis]
Length = 402
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 68/120 (56%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C+C+ + + + + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQC--CECKT-NLSEKCFSREGKLYCKNDFFRRFG 61
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C + I ++V +A++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 62 TK--CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDY 119
>gi|431914229|gb|ELK15487.1| LIM/homeobox protein Lhx5 [Pteropus alecto]
Length = 402
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 68/120 (56%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C+C+ + + + + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQC--CECKT-NLSEKCFSREGKLYCKNDFFRRFG 61
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C + I ++V +A++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 62 TK--CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDY 119
>gi|11641283|ref|NP_071758.1| LIM/homeobox protein Lhx5 [Homo sapiens]
gi|332840493|ref|XP_001153819.2| PREDICTED: LIM/homeobox protein Lhx5 [Pan troglodytes]
gi|397525022|ref|XP_003832477.1| PREDICTED: LIM/homeobox protein Lhx5 [Pan paniscus]
gi|426374256|ref|XP_004053995.1| PREDICTED: LIM/homeobox protein Lhx5 [Gorilla gorilla gorilla]
gi|18202938|sp|Q9H2C1.1|LHX5_HUMAN RecName: Full=LIM/homeobox protein Lhx5; Short=LIM homeobox protein
5
gi|11527289|gb|AAG36963.1|AF291181_1 LHX5 protein [Homo sapiens]
gi|80475867|gb|AAI09231.1| LIM homeobox 5 [Homo sapiens]
gi|119618466|gb|EAW98060.1| LIM homeobox 5 [Homo sapiens]
gi|261861188|dbj|BAI47116.1| LIM homeobox 5 [synthetic construct]
Length = 402
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 68/120 (56%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C+C+ + + + + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQC--CECKT-NLSEKCFSREGKLYCKNDFFRRFG 61
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C + I ++V +A++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 62 TK--CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDY 119
>gi|354497499|ref|XP_003510857.1| PREDICTED: LIM/homeobox protein Lhx5-like [Cricetulus griseus]
gi|344257745|gb|EGW13849.1| LIM/homeobox protein Lhx5 [Cricetulus griseus]
Length = 402
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 68/120 (56%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C+C+ + + + + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQC--CECKT-NLSEKCFSREGKLYCKNDFFRRFG 61
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C + I ++V +A++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 62 TK--CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDY 119
>gi|391342697|ref|XP_003745652.1| PREDICTED: LIM/homeobox protein Lhx1-like [Metaseiulus
occidentalis]
Length = 363
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 68/121 (56%), Gaps = 6/121 (4%)
Query: 53 ECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLF 112
+CA C + I +RFLL LD WH C++C C C L E + + + C+ D+ + F
Sbjct: 5 QCAGCERPILDRFLLHVLDRSWHAKCVQCSDCRCSLSE---KCFSRDGKLFCRSDFYKRF 61
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYD 171
GT CA C + I ++V RA++ V+HL+CF C C + G+ Y+ D N+ +C+ D
Sbjct: 62 GTK--CAGCAQGISPTDLVRRARSKVFHLKCFTCLVCRKQLSTGEELYVLDENRFICKED 119
Query: 172 Y 172
Y
Sbjct: 120 Y 120
>gi|324511084|gb|ADY44626.1| LIM/homeobox protein Awh [Ascaris suum]
Length = 384
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 70/121 (57%), Gaps = 3/121 (2%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C+SC + I +R LL FWH +CL+C C L + S + K ++I CK Y R FG
Sbjct: 119 CSSCTEYILDRILLNVNSRFWHTECLRCSQCSVHLDQYPS-CFIKEDIIYCKPCYNRQFG 177
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
T C++C ++I + V RA++ VYHL CFAC QC + G+ F L D ++LC+ Y
Sbjct: 178 TK--CSSCRRLIQPTDWVRRARSFVYHLACFACDQCKRQLSTGEEFALQDCRLLCKQHYV 235
Query: 174 E 174
E
Sbjct: 236 E 236
>gi|383850874|ref|XP_003700999.1| PREDICTED: LIM/homeobox protein Lhx9-like [Megachile rotundata]
Length = 391
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 68/134 (50%), Gaps = 4/134 (2%)
Query: 41 GALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGS-TLYQKA 99
GA G S G C CG+ I ER+ L+A D WH CL+C C CR+ T + +
Sbjct: 25 GAGDNGNSDGNLGCGGCGREIAERWYLRAADRAWHCGCLRC--CHCRVPLAAELTCFARD 82
Query: 100 NLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRF 159
I CK DY RLF + C+ C I A E+VMRA++ VYH+ CF C C GD F
Sbjct: 83 GNIYCKEDYYRLFAVS-RCSRCRAGISASELVMRARDLVYHVACFTCASCGTPLNKGDHF 141
Query: 160 YLCDNKILCEYDYE 173
D + C YE
Sbjct: 142 GQRDGLVYCRPHYE 155
>gi|195425678|ref|XP_002061119.1| apterous [Drosophila willistoni]
gi|27374312|gb|AAO01060.1| ap-PA [Drosophila willistoni]
gi|194157204|gb|EDW72105.1| apterous [Drosophila willistoni]
Length = 469
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 68/122 (55%), Gaps = 2/122 (1%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L +CA CG++I +RF L A++ WH CL+C C L E S+ Y + I CK DY
Sbjct: 146 LDDCAGCGRQIQDRFYLSAVEKRWHASCLQCYACRQPL-ERESSCYSRDGNIYCKNDYYS 204
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
FGT C+ C I + E+VMRA+N V+H+ CF C C+ GD++ + D I C
Sbjct: 205 FFGTR-RCSRCLASISSNELVMRARNLVFHVNCFCCTVCHTPLTKGDQYGIIDALIYCRT 263
Query: 171 DY 172
Y
Sbjct: 264 HY 265
>gi|6678690|ref|NP_032525.1| LIM/homeobox protein Lhx5 [Mus musculus]
gi|20514764|ref|NP_620605.1| LIM/homeobox protein Lhx5 [Rattus norvegicus]
gi|47606426|sp|P61376.1|LHX5_RAT RecName: Full=LIM/homeobox protein Lhx5; Short=LIM homeobox protein
5; AltName: Full=Homeobox protein LIM-2
gi|47606427|sp|P61375.1|LHX5_MOUSE RecName: Full=LIM/homeobox protein Lhx5; Short=LIM homeobox protein
5
gi|531220|gb|AAA62162.1| amino acid feature: homeodomain, bp 895 .. 1074; amino acid
feature: LIM1, bp 373 .. 516; amino acid feature: LIM2,
bp 550 .. 705 [Rattus norvegicus]
gi|1388183|gb|AAC52842.1| LIM/homeodomain [Mus musculus]
gi|26329557|dbj|BAC28517.1| unnamed protein product [Mus musculus]
gi|26339568|dbj|BAC33455.1| unnamed protein product [Mus musculus]
gi|34784227|gb|AAH57585.1| LIM homeobox protein 5 [Mus musculus]
gi|74148661|dbj|BAE24281.1| unnamed protein product [Mus musculus]
gi|148687827|gb|EDL19774.1| LIM homeobox protein 5 [Mus musculus]
gi|149063463|gb|EDM13786.1| LIM homeobox protein 5 [Rattus norvegicus]
Length = 402
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 68/120 (56%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C+C+ + + + + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQC--CECKT-NLSEKCFSREGKLYCKNDFFRRFG 61
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C + I ++V +A++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 62 TK--CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDY 119
>gi|291407015|ref|XP_002719805.1| PREDICTED: LIM homeobox protein 5 [Oryctolagus cuniculus]
Length = 402
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 67/120 (55%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C+C+ + + + + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQC--CECKT-NLSEKCFSREGKLYCKNDFFRRFG 61
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C + I ++V +A+ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 62 TK--CAGCAQGISPSDLVRKARGKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDY 119
>gi|395510266|ref|XP_003759400.1| PREDICTED: insulin gene enhancer protein ISL-1 isoform 2
[Sarcophilus harrisii]
Length = 354
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 80/145 (55%), Gaps = 4/145 (2%)
Query: 54 CASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLF 112
C CG +I ++++L+ + DL WH CLKC C+ L E T + + CKRDY+RL+
Sbjct: 17 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDET-CTCFVRDGKTYCKRDYIRLY 75
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
G CA C+ + VMRA++ VYH+ECF C C+ + GD F L ++ + C D+
Sbjct: 76 GIK--CAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADH 133
Query: 173 EERQVFANIAYNPSSLAHLRRQVTL 197
+ + + A +P S H R + +
Sbjct: 134 DVVERASLGAGDPLSPLHPARPLQM 158
>gi|345304657|ref|XP_001508080.2| PREDICTED: insulin gene enhancer protein ISL-1-like
[Ornithorhynchus anatinus]
Length = 382
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 80/145 (55%), Gaps = 4/145 (2%)
Query: 54 CASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLF 112
C CG +I ++++L+ + DL WH CLKC C+ L E T + + CKRDY+RL+
Sbjct: 50 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDET-CTCFVRDGKTYCKRDYIRLY 108
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
G CA C+ + VMRA++ VYH+ECF C C+ + GD F L ++ + C D+
Sbjct: 109 GIK--CAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADH 166
Query: 173 EERQVFANIAYNPSSLAHLRRQVTL 197
+ + + A +P S H R + +
Sbjct: 167 DVVERASLGAGDPLSPLHPARPLQM 191
>gi|126315044|ref|XP_001365199.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Monodelphis
domestica]
gi|395510264|ref|XP_003759399.1| PREDICTED: insulin gene enhancer protein ISL-1 isoform 1
[Sarcophilus harrisii]
Length = 349
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 80/145 (55%), Gaps = 4/145 (2%)
Query: 54 CASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLF 112
C CG +I ++++L+ + DL WH CLKC C+ L E T + + CKRDY+RL+
Sbjct: 17 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDET-CTCFVRDGKTYCKRDYIRLY 75
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
G CA C+ + VMRA++ VYH+ECF C C+ + GD F L ++ + C D+
Sbjct: 76 GIK--CAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADH 133
Query: 173 EERQVFANIAYNPSSLAHLRRQVTL 197
+ + + A +P S H R + +
Sbjct: 134 DVVERASLGAGDPLSPLHPARPLQM 158
>gi|125810912|ref|XP_001361667.1| ap [Drosophila pseudoobscura pseudoobscura]
gi|195154388|ref|XP_002018104.1| GL16944 [Drosophila persimilis]
gi|27374288|gb|AAO01041.1| ap-PA [Drosophila pseudoobscura]
gi|54636843|gb|EAL26246.1| ap [Drosophila pseudoobscura pseudoobscura]
gi|194113900|gb|EDW35943.1| GL16944 [Drosophila persimilis]
Length = 469
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 68/122 (55%), Gaps = 2/122 (1%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L +CA CG++I +RF L A++ WH CL+C C L E S+ Y + I CK DY
Sbjct: 145 LDDCAGCGRQIQDRFYLSAVEKRWHASCLQCYACRQPL-ERESSCYSRDGNIYCKNDYYS 203
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
FGT C+ C I + E+VMRA+N V+H+ CF C C+ GD++ + D I C
Sbjct: 204 FFGTR-RCSRCLASISSNELVMRARNLVFHVNCFCCTVCHTPLTKGDQYGIIDALIYCRT 262
Query: 171 DY 172
Y
Sbjct: 263 HY 264
>gi|348505058|ref|XP_003440078.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like
[Oreochromis niloticus]
Length = 361
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 72/134 (53%), Gaps = 10/134 (7%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL+ D WHEDC++C C + ++ + + + CKRDY LF
Sbjct: 17 CAGCHRLIRDRFLLRVTDGLWHEDCVRCAACG---DALTNSCFLRDRKLYCKRDYADLFA 73
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
CA CT+ I E+VMRA V+HL CF C C+ R GDR L + ++LC
Sbjct: 74 V--RCAGCTEAISPAELVMRAGAAVFHLRCFTCSVCSCRLQTGDRCVLREGQLLC----- 126
Query: 174 ERQVFANIAYNPSS 187
R+ + +PSS
Sbjct: 127 AREGYHQCLASPSS 140
>gi|440898273|gb|ELR49802.1| LIM/homeobox protein Lhx5, partial [Bos grunniens mutus]
Length = 376
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 68/120 (56%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C+C+ + + + + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQC--CECKT-NLSEKCFSREGKLYCKNDFFRRFG 61
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C + I ++V +A++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 62 TK--CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDY 119
>gi|158292633|ref|XP_558527.3| AGAP005137-PA [Anopheles gambiae str. PEST]
gi|157017083|gb|EAL40471.3| AGAP005137-PA [Anopheles gambiae str. PEST]
Length = 432
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 73/145 (50%), Gaps = 27/145 (18%)
Query: 54 CASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLF 112
C CG++I +R+ +K + D FWHE CL C C CR+ ++ T Y K + CK DY R+F
Sbjct: 19 CEGCGQKIKDRYFMKLSPDQFWHEQCLLC--CICRI-QLSQTCYTKNTKVYCKDDYYRIF 75
Query: 113 GTTGY-----------------------CAACTKVIPAFEMVMRAKNNVYHLECFACQQC 149
G + C C + I EMVMRAK+ VYHL CF C C
Sbjct: 76 GVSSVHQQNQQHHQQHGQQQQQQQHQRDCYGCGERIAPIEMVMRAKHLVYHLHCFLCYTC 135
Query: 150 NHRFCVGDRFYLCDNKILCEYDYEE 174
N G+ F + K++C++D E+
Sbjct: 136 NRPLQKGEPFSIRAGKLICQHDLEK 160
>gi|403281850|ref|XP_003932386.1| PREDICTED: LIM/homeobox protein Lhx5 [Saimiri boliviensis
boliviensis]
Length = 385
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 68/120 (56%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C+C+ + + + + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQC--CECKTN-LSEKCFSREGKLYCKNDFFRRFG 61
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C + I ++V +A++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 62 TK--CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDY 119
>gi|281343471|gb|EFB19055.1| hypothetical protein PANDA_014809 [Ailuropoda melanoleuca]
Length = 354
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 68/120 (56%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C+C+ + + + + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQC--CECKTN-LSEKCFSREGKLYCKNDFFRRFG 61
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C + I ++V +A++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 62 TK--CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDY 119
>gi|355749907|gb|EHH54245.1| Insulin gene enhancer protein ISL-1 [Macaca fascicularis]
Length = 349
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 80/145 (55%), Gaps = 4/145 (2%)
Query: 54 CASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLF 112
C CG +I ++++L+ + DL WH CLKC C+ L E T + + CKRDY+RL+
Sbjct: 17 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDE-SCTCFVRDGKTYCKRDYIRLY 75
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
G CA C+ + VMRA++ VYH+ECF C C+ + GD F L ++ + C D+
Sbjct: 76 GIK--CAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADH 133
Query: 173 EERQVFANIAYNPSSLAHLRRQVTL 197
+ + + A +P S H R + +
Sbjct: 134 DVVERASLGAGDPLSPLHPARPLQM 158
>gi|94400881|ref|NP_059035.3| insulin gene enhancer protein ISL-1 [Rattus norvegicus]
gi|115387114|ref|NP_002193.2| insulin gene enhancer protein ISL-1 [Homo sapiens]
gi|149642655|ref|NP_001092600.1| insulin gene enhancer protein ISL-1 [Bos taurus]
gi|162287065|ref|NP_067434.3| insulin gene enhancer protein ISL-1 [Mus musculus]
gi|291395329|ref|XP_002714072.1| PREDICTED: islet-1 [Oryctolagus cuniculus]
gi|311273676|ref|XP_003133982.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Sus scrofa]
gi|332254884|ref|XP_003276562.1| PREDICTED: insulin gene enhancer protein ISL-1 [Nomascus
leucogenys]
gi|332821395|ref|XP_001150633.2| PREDICTED: insulin gene enhancer protein ISL-1 isoform 2 [Pan
troglodytes]
gi|344272509|ref|XP_003408074.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Loxodonta
africana]
gi|345799577|ref|XP_853721.2| PREDICTED: insulin gene enhancer protein ISL-1 isoform 1 [Canis
lupus familiaris]
gi|348568904|ref|XP_003470238.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Cavia
porcellus]
gi|354472426|ref|XP_003498440.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Cricetulus
griseus]
gi|395818859|ref|XP_003782831.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Otolemur
garnettii]
gi|397514229|ref|XP_003827396.1| PREDICTED: insulin gene enhancer protein ISL-1 [Pan paniscus]
gi|402871509|ref|XP_003899703.1| PREDICTED: insulin gene enhancer protein ISL-1 [Papio anubis]
gi|403267625|ref|XP_003925922.1| PREDICTED: insulin gene enhancer protein ISL-1 [Saimiri boliviensis
boliviensis]
gi|410949527|ref|XP_003981473.1| PREDICTED: insulin gene enhancer protein ISL-1 [Felis catus]
gi|47606422|sp|P61374.1|ISL1_RAT RecName: Full=Insulin gene enhancer protein ISL-1; Short=Islet-1
gi|47606423|sp|P61371.1|ISL1_HUMAN RecName: Full=Insulin gene enhancer protein ISL-1; Short=Islet-1
gi|47606424|sp|P61372.1|ISL1_MOUSE RecName: Full=Insulin gene enhancer protein ISL-1; Short=Islet-1
gi|47606425|sp|P61373.1|ISL1_MESAU RecName: Full=Insulin gene enhancer protein ISL-1; Short=Islet-1
gi|2137056|pir||I67418 transcription factor isl-1 - hamster
gi|4261764|gb|AAD14064.1|S70721_1 homeobox [Homo sapiens]
gi|545787|gb|AAB30128.1| homeobox [Rattus sp.]
gi|4469284|emb|CAB38446.1| Lim-homeodomain protein Islet1 [Mus musculus]
gi|22658390|gb|AAH31213.1| ISL LIM homeobox 1 [Homo sapiens]
gi|30065750|gb|AAP20776.1| Isl-1 [Cricetulus sp.]
gi|119575256|gb|EAW54861.1| ISL1 transcription factor, LIM/homeodomain, (islet-1) [Homo
sapiens]
gi|123996141|gb|ABM85672.1| ISL1 transcription factor, LIM/homeodomain, (islet-1) [synthetic
construct]
gi|124298178|gb|AAI32264.1| ISL1 transcription factor, LIM/homeodomain [Mus musculus]
gi|124375804|gb|AAI32610.1| ISL1 transcription factor, LIM/homeodomain [Mus musculus]
gi|148686421|gb|EDL18368.1| ISL1 transcription factor, LIM/homeodomain, isoform CRA_b [Mus
musculus]
gi|148877422|gb|AAI46164.1| ISL1 protein [Bos taurus]
gi|149059388|gb|EDM10395.1| ISL1 transcription factor, LIM/homeodomain 1 [Rattus norvegicus]
gi|157928248|gb|ABW03420.1| ISL LIM homeobox 1 [synthetic construct]
gi|261861196|dbj|BAI47120.1| ISL LIM homeobox 1 [synthetic construct]
gi|296475787|tpg|DAA17902.1| TPA: islet-1 [Bos taurus]
gi|351712707|gb|EHB15626.1| Insulin gene enhancer protein ISL-1 [Heterocephalus glaber]
gi|355691298|gb|EHH26483.1| Insulin gene enhancer protein ISL-1 [Macaca mulatta]
gi|226841|prf||1608207A insulin gene enhancer binding protein Isl-1
Length = 349
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 80/145 (55%), Gaps = 4/145 (2%)
Query: 54 CASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLF 112
C CG +I ++++L+ + DL WH CLKC C+ L E T + + CKRDY+RL+
Sbjct: 17 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDE-SCTCFVRDGKTYCKRDYIRLY 75
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
G CA C+ + VMRA++ VYH+ECF C C+ + GD F L ++ + C D+
Sbjct: 76 GIK--CAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADH 133
Query: 173 EERQVFANIAYNPSSLAHLRRQVTL 197
+ + + A +P S H R + +
Sbjct: 134 DVVERASLGAGDPLSPLHPARPLQM 158
>gi|410922098|ref|XP_003974520.1| PREDICTED: insulin gene enhancer protein isl-1-like [Takifugu
rubripes]
Length = 331
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 78/145 (53%), Gaps = 4/145 (2%)
Query: 54 CASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLF 112
C CG +I ++++L+ + DL WH CLKC C L E T + + CKRDY+RL+
Sbjct: 17 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECSQYLDE-SCTCFVRDGKTYCKRDYIRLY 75
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
G CA C + VMRA++ VYH+ECF C C+ + GD F L D+ + C D+
Sbjct: 76 GIK--CAKCNIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALRDDGLFCRADH 133
Query: 173 EERQVFANIAYNPSSLAHLRRQVTL 197
+ + + + +P S H R + +
Sbjct: 134 DVVERASLASGDPLSPLHPARPLQM 158
>gi|195161060|ref|XP_002021388.1| GL25299 [Drosophila persimilis]
gi|198465223|ref|XP_001353549.2| GA10520 [Drosophila pseudoobscura pseudoobscura]
gi|194118501|gb|EDW40544.1| GL25299 [Drosophila persimilis]
gi|198150064|gb|EAL31062.2| GA10520 [Drosophila pseudoobscura pseudoobscura]
Length = 275
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 72/124 (58%), Gaps = 3/124 (2%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L+ CA+CG+ I++RF L+ WH CL+C C C L S ++ + CK DY +
Sbjct: 5 LRSCAACGEPISDRFFLEVGGCSWHAHCLRCCMCMCPLDRQQSCFIRERQ-VYCKADYSK 63
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
FG C+ C + I A + V RA++ V+HL CFAC QC + G++F L D+++LC+
Sbjct: 64 NFGAK--CSKCCRGISASDWVRRARDLVFHLACFACDQCGRQLSTGEQFALMDDRVLCKA 121
Query: 171 DYEE 174
Y E
Sbjct: 122 HYLE 125
>gi|440908077|gb|ELR58138.1| Insulin enhancer protein ISL-1, partial [Bos grunniens mutus]
Length = 359
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 80/145 (55%), Gaps = 4/145 (2%)
Query: 54 CASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLF 112
C CG +I ++++L+ + DL WH CLKC C+ L E T + + CKRDY+RL+
Sbjct: 27 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDE-SCTCFVRDGKTYCKRDYIRLY 85
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
G CA C+ + VMRA++ VYH+ECF C C+ + GD F L ++ + C D+
Sbjct: 86 GIK--CAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADH 143
Query: 173 EERQVFANIAYNPSSLAHLRRQVTL 197
+ + + A +P S H R + +
Sbjct: 144 DVVERASLGAGDPLSPLHPARPLQM 168
>gi|311270693|ref|XP_003132949.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx5-like [Sus
scrofa]
Length = 402
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 66/120 (55%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C L E + + + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECXTNLSE---KCFSREGKLYCKNDFFRRFG 61
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C + I ++V +A++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 62 TK--CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDY 119
>gi|533419|gb|AAA81946.1| ISL-1 [Homo sapiens]
Length = 346
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 80/145 (55%), Gaps = 4/145 (2%)
Query: 54 CASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLF 112
C CG +I ++++L+ + DL WH CLKC C+ L E T + + CKRDY+RL+
Sbjct: 14 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDE-SCTCFVRDGKTYCKRDYIRLY 72
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
G CA C+ + VMRA++ VYH+ECF C C+ + GD F L ++ + C D+
Sbjct: 73 GIK--CAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADH 130
Query: 173 EERQVFANIAYNPSSLAHLRRQVTL 197
+ + + A +P S H R + +
Sbjct: 131 DVVERASLGAGDPLSPLHPARPLQM 155
>gi|189238568|ref|XP_969484.2| PREDICTED: similar to LIM homeobox 1b [Tribolium castaneum]
Length = 497
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 71/127 (55%), Gaps = 6/127 (4%)
Query: 47 ASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKR 106
A+G L CA+C K I ++FLL L+ WH DC++C C L + + + N + C+
Sbjct: 147 AAGMLISCAACDKPILDKFLLNVLERTWHADCVRCFDCHAPLTD---KCFSRENKLFCRN 203
Query: 107 DYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFY-LCDNK 165
D+ R +GT C C + I ++V +A++ V+HL CF C C + G+ Y L DNK
Sbjct: 204 DFFRRYGTK--CGGCGQGISPSDLVRKARDKVFHLNCFTCLVCRKQLSTGEELYVLDDNK 261
Query: 166 ILCEYDY 172
+C+ DY
Sbjct: 262 FICKDDY 268
>gi|334311509|ref|XP_001366137.2| PREDICTED: LIM homeobox transcription factor 1-beta isoform 1
[Monodelphis domestica]
Length = 394
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 80/151 (52%), Gaps = 6/151 (3%)
Query: 37 SVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLY 96
T G L G C C + I++RFL++ + WHE+CL+C C L ++ Y
Sbjct: 39 PATLGVLLGSDCPHPAVCEGCQRPISDRFLMRVNESSWHEECLQCAACQQALT---TSCY 95
Query: 97 QKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVG 156
+ + CK+DY +LF C+ C + I E VMRA VYHL CF C C + G
Sbjct: 96 FRDRKLYCKQDYQQLFA--AKCSGCMEKIAPTEFVMRALECVYHLSCFCCCVCERQLRKG 153
Query: 157 DRFYLCDNKILCEYDYE-ERQVFANIAYNPS 186
D F L + ++LC+ DYE E+ + ++++ + S
Sbjct: 154 DEFVLKEGQLLCKSDYEKEKDLLSSVSPDES 184
>gi|395505734|ref|XP_003757194.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 1
[Sarcophilus harrisii]
Length = 394
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 6/153 (3%)
Query: 35 ASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGST 94
T G L G C C + I++RFL++ + WHE+CL+C C L ++
Sbjct: 37 PGPATLGVLLGSDCPHPAVCEGCQRPISDRFLMRVNESSWHEECLQCAACQQALT---TS 93
Query: 95 LYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFC 154
Y + + CK+DY +LF C+ C + I E VMRA VYHL CF C C +
Sbjct: 94 CYFRDRKLYCKQDYQQLFA--AKCSGCMEKIAPTEFVMRALECVYHLSCFCCCVCERQLR 151
Query: 155 VGDRFYLCDNKILCEYDYE-ERQVFANIAYNPS 186
GD F L + ++LC+ DYE E+ + ++++ + S
Sbjct: 152 KGDEFVLKEGQLLCKSDYEKEKDLLSSVSPDES 184
>gi|229619776|dbj|BAH58087.1| LIM homeobox protein 1 [Nematostella vectensis]
Length = 358
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 68/123 (55%), Gaps = 6/123 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+++CA C I ++FLLK LD WH C++C C C L E + + + CK D+ R
Sbjct: 2 VQQCAGCQLPIADKFLLKVLDGVWHAQCVQCSDCKCPLTE---RCFSREGKLFCKTDFYR 58
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDR-FYLCDNKILCE 169
+GT C+ C + I +MV RAK+ V+H++CF C C + GD +Y+ D +C
Sbjct: 59 RYGTK--CSGCDQGISPNDMVRRAKHLVFHVDCFVCSYCKRQITTGDELYYIGDGSFICR 116
Query: 170 YDY 172
DY
Sbjct: 117 DDY 119
>gi|6980082|gb|AAF34717.1|AF226616_1 LIM-homeodomain transcription factor islet [Branchiostoma floridae]
Length = 419
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 70/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLF 112
C CG I ++++L+ A DL WH CLKC C+ L E T + + CKR Y+RLF
Sbjct: 15 CVGCGSHIHDQYILRVAPDLEWHAACLKCSDCNQYLDET-CTCFVREGKTYCKRCYVRLF 73
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
GT CA C+ + VMRAKN +YH++CF C C+ + GD F L ++ + C+ D+
Sbjct: 74 GTK--CAKCSLGFTKNDFVMRAKNKIYHIDCFRCVACSRQLIPGDEFALREDGLFCKADH 131
Query: 173 E 173
E
Sbjct: 132 E 132
>gi|194749355|ref|XP_001957104.1| GF24228 [Drosophila ananassae]
gi|190624386|gb|EDV39910.1| GF24228 [Drosophila ananassae]
Length = 275
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 72/124 (58%), Gaps = 3/124 (2%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L+ CA+CG+ I++RF L+ WH CL+C C C L S ++ + CK DY +
Sbjct: 5 LRSCAACGEPISDRFFLEVGGCSWHAHCLRCCMCMCPLDRQQSCFIRERQ-VYCKADYSK 63
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
FG C+ C + I A + V RA++ V+HL CFAC QC + G++F L D+++LC+
Sbjct: 64 NFGAK--CSKCCRGISASDWVRRARDLVFHLACFACDQCGRQLSTGEQFALMDDRVLCKA 121
Query: 171 DYEE 174
Y E
Sbjct: 122 HYLE 125
>gi|297662848|ref|XP_002809900.1| PREDICTED: LOW QUALITY PROTEIN: LIM homeobox transcription factor
1-alpha [Pongo abelii]
Length = 489
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 84/169 (49%), Gaps = 9/169 (5%)
Query: 18 FDSLRLATHYQVDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHED 77
D L++ ++Q + T AS +L G A C C + I +RFLL+ D FWHE
Sbjct: 2 LDGLKMEENFQSAIDTSASF---SSLLGRAVSPKSVCEGCQRVILDRFLLRLNDSFWHEQ 58
Query: 78 CLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNN 137
C++C C L +T + + + CK DY +LF C C + I E VMRA+ +
Sbjct: 59 CVQCASCKEPLE---TTCFYRDKKLYCKYDYEKLFAVK--CGGCFEAIAPNEFVMRAQKS 113
Query: 138 VYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFANIAYNPS 186
VYHL CF C C + GD F L L + DYE+ + +++ PS
Sbjct: 114 VYHLSCFCCCVCERQLQXGDEFVLKRAAAL-QRDYEKERELLSLSRFPS 161
>gi|125823566|ref|XP_001339831.1| PREDICTED: LIM/homeobox protein Lhx8-like [Danio rerio]
Length = 356
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 68/138 (49%), Gaps = 3/138 (2%)
Query: 35 ASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGST 94
+ S +A A G C C + I +R LLK D+ WH CL C C L E +T
Sbjct: 67 SPSALPETMASDAFQGKAVCTRCREHILDRHLLKVNDMCWHARCLSCSVCQTTLSE-QTT 125
Query: 95 LYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFC 154
Y + I CK Y R F T +C+ C + + + + V RAK NVYHL CF+C C +
Sbjct: 126 CYVREREIFCKLHYFRRFQT--WCSCCRETLHSSDWVHRAKGNVYHLACFSCFSCKRQLS 183
Query: 155 VGDRFYLCDNKILCEYDY 172
G+ F L K+LC Y
Sbjct: 184 TGEEFALVGEKLLCRIHY 201
>gi|26355418|dbj|BAC41153.1| unnamed protein product [Mus musculus]
Length = 349
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 80/145 (55%), Gaps = 4/145 (2%)
Query: 54 CASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLF 112
C CG +I ++++L+ + DL WH CLKC C+ L E + L + CKRDY+RL+
Sbjct: 17 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCLVRDGK-TYCKRDYIRLY 75
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
G CA C+ + VMRA++ VYH+ECF C C+ + GD F L ++ + C D+
Sbjct: 76 GIK--CAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADH 133
Query: 173 EERQVFANIAYNPSSLAHLRRQVTL 197
+ + + A +P S H R + +
Sbjct: 134 DVVERASLGAGDPLSPLHPARPLQM 158
>gi|358333778|dbj|GAA52242.1| LIM homeobox protein 3/4, partial [Clonorchis sinensis]
Length = 405
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 65/108 (60%), Gaps = 6/108 (5%)
Query: 67 LKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIP 126
++ L+ WH +CLKC C L + + + + + CK D+ R FGT CA C + IP
Sbjct: 1 MRVLNQHWHSNCLKCMDCGASLSD---KCFMRMDEVYCKNDFFRRFGTK--CAGCERGIP 55
Query: 127 AFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 173
E+V A++NVYH++CFAC C+ GD FYL D K++C+YD+E
Sbjct: 56 PTEVVRTAQDNVYHMDCFACVICDRLLNTGDEFYLLRDRKLMCKYDFE 103
>gi|242011465|ref|XP_002426470.1| LIM/homeobox protein Lhx3, putative [Pediculus humanus corporis]
gi|212510582|gb|EEB13732.1| LIM/homeobox protein Lhx3, putative [Pediculus humanus corporis]
Length = 394
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 73/137 (53%), Gaps = 7/137 (5%)
Query: 37 SVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLY 96
S G L G + G L CA C K I ++FLL LD WH +C++ C DCR + +
Sbjct: 17 SEVPGGLPG-SGGMLLACAGCDKPILDKFLLNVLDRTWHAECVR--CHDCRAA-LADKCF 72
Query: 97 QKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVG 156
+ + C+ D+ R +GT C C + I ++V +A++ V+HL CF C C + G
Sbjct: 73 SREGKLFCRNDFFRRYGTK--CGGCLQGISPSDLVRKARDKVFHLNCFTCMVCRKQLSTG 130
Query: 157 DRFY-LCDNKILCEYDY 172
+ Y L DNK +C+ DY
Sbjct: 131 EELYVLDDNKFICKEDY 147
>gi|345806104|ref|XP_548461.3| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Canis lupus
familiaris]
Length = 397
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 67/128 (52%), Gaps = 10/128 (7%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY
Sbjct: 36 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYSPS 93
Query: 113 GTTGY-------CAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNK 165
Y CA C I A EMVMRA++ VYHL CF C CN GD F + D+
Sbjct: 94 LNGPYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSL 153
Query: 166 ILCEYDYE 173
+ C +E
Sbjct: 154 VYCRLHFE 161
>gi|395505738|ref|XP_003757196.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 3
[Sarcophilus harrisii]
Length = 401
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 6/153 (3%)
Query: 35 ASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGST 94
T G L G C C + I++RFL++ + WHE+CL+C C L ++
Sbjct: 37 PGPATLGVLLGSDCPHPAVCEGCQRPISDRFLMRVNESSWHEECLQCAACQQALT---TS 93
Query: 95 LYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFC 154
Y + + CK+DY +LF C+ C + I E VMRA VYHL CF C C +
Sbjct: 94 CYFRDRKLYCKQDYQQLFAAK--CSGCMEKIAPTEFVMRALECVYHLSCFCCCVCERQLR 151
Query: 155 VGDRFYLCDNKILCEYDYE-ERQVFANIAYNPS 186
GD F L + ++LC+ DYE E+ + ++++ + S
Sbjct: 152 KGDEFVLKEGQLLCKSDYEKEKDLLSSVSPDES 184
>gi|431908581|gb|ELK12174.1| Insulin protein enhancer protein ISL-1 [Pteropus alecto]
Length = 383
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 80/145 (55%), Gaps = 4/145 (2%)
Query: 54 CASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLF 112
C CG +I ++++L+ + DL WH CLKC C+ L E T + + CKRDY+RL+
Sbjct: 51 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDE-SCTCFVRDGKTYCKRDYIRLY 109
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
G CA C+ + VMRA++ VYH+ECF C C+ + GD F L ++ + C D+
Sbjct: 110 GIK--CAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADH 167
Query: 173 EERQVFANIAYNPSSLAHLRRQVTL 197
+ + + A +P S H R + +
Sbjct: 168 DVVERASLGAGDPLSPLHPARPLQM 192
>gi|403299864|ref|XP_003940694.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Saimiri boliviensis
boliviensis]
Length = 397
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 69/128 (53%), Gaps = 10/128 (7%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDY--LR 110
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY
Sbjct: 36 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYSPS 93
Query: 111 LFG-----TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNK 165
L G + CA C I A EMVMRA++ VYHL CF C CN GD F + D+
Sbjct: 94 LHGPYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSL 153
Query: 166 ILCEYDYE 173
+ C +E
Sbjct: 154 VYCRLHFE 161
>gi|395505736|ref|XP_003757195.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 2
[Sarcophilus harrisii]
Length = 404
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 6/153 (3%)
Query: 35 ASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGST 94
T G L G C C + I++RFL++ + WHE+CL+C C L ++
Sbjct: 37 PGPATLGVLLGSDCPHPAVCEGCQRPISDRFLMRVNESSWHEECLQCAACQQALT---TS 93
Query: 95 LYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFC 154
Y + + CK+DY +LF C+ C + I E VMRA VYHL CF C C +
Sbjct: 94 CYFRDRKLYCKQDYQQLFA--AKCSGCMEKIAPTEFVMRALECVYHLSCFCCCVCERQLR 151
Query: 155 VGDRFYLCDNKILCEYDYE-ERQVFANIAYNPS 186
GD F L + ++LC+ DYE E+ + ++++ + S
Sbjct: 152 KGDEFVLKEGQLLCKSDYEKEKDLLSSVSPDES 184
>gi|194223906|ref|XP_001916580.1| PREDICTED: insulin gene enhancer protein ISL-1 [Equus caballus]
Length = 349
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 80/147 (54%), Gaps = 8/147 (5%)
Query: 54 CASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLF 112
C CG +I ++++L+ + DL WH CLKC C+ L E T + + CKRDY+RL+
Sbjct: 17 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDE-SCTCFVRDGKTYCKRDYIRLY 75
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILC--EY 170
G CA C+ + VMRA++ VYH+ECF C C+ + GD F L ++ + C E+
Sbjct: 76 GIK--CAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRAEH 133
Query: 171 DYEERQVFANIAYNPSSLAHLRRQVTL 197
D ER A +P S H R + +
Sbjct: 134 DVVERASLG--AGDPLSPLHPARPLQM 158
>gi|402896426|ref|XP_003911301.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Papio anubis]
Length = 414
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 69/128 (53%), Gaps = 10/128 (7%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDY--LR 110
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYSPS 110
Query: 111 LFG-----TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNK 165
L G + CA C I A EMVMRA++ VYHL CF C CN GD F + D+
Sbjct: 111 LHGPYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSL 170
Query: 166 ILCEYDYE 173
+ C +E
Sbjct: 171 VYCRLHFE 178
>gi|395824163|ref|XP_003785340.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Otolemur garnettii]
Length = 414
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 69/128 (53%), Gaps = 10/128 (7%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDY--LR 110
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYSPS 110
Query: 111 LFG-----TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNK 165
L G + CA C I A EMVMRA++ VYHL CF C CN GD F + D+
Sbjct: 111 LHGLYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSL 170
Query: 166 ILCEYDYE 173
+ C +E
Sbjct: 171 VYCRLHFE 178
>gi|334311511|ref|XP_003339631.1| PREDICTED: LIM homeobox transcription factor 1-beta isoform 2
[Monodelphis domestica]
Length = 401
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 6/153 (3%)
Query: 35 ASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGST 94
T G L G C C + I++RFL++ + WHE+CL+C C L ++
Sbjct: 37 PGPATLGVLLGSDCPHPAVCEGCQRPISDRFLMRVNESSWHEECLQCAACQQALT---TS 93
Query: 95 LYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFC 154
Y + + CK+DY +LF C+ C + I E VMRA VYHL CF C C +
Sbjct: 94 CYFRDRKLYCKQDYQQLFAAK--CSGCMEKIAPTEFVMRALECVYHLSCFCCCVCERQLR 151
Query: 155 VGDRFYLCDNKILCEYDYE-ERQVFANIAYNPS 186
GD F L + ++LC+ DYE E+ + ++++ + S
Sbjct: 152 KGDEFVLKEGQLLCKSDYEKEKDLLSSVSPDES 184
>gi|328787166|ref|XP_003250891.1| PREDICTED: LIM/homeobox protein Lhx9-like [Apis mellifera]
Length = 390
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 72/141 (51%), Gaps = 8/141 (5%)
Query: 37 SVTQGALAGGASG---GLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGS 93
+V+ L GG + G+ C CG+ I ER+ L+A D WH CL+C C CR+
Sbjct: 18 AVSNRQLGGGENNNTDGVLGCGGCGREIAERWYLRAADRAWHCGCLRC--CHCRVPLAAE 75
Query: 94 -TLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHR 152
T + + I CK DY RLF G C+ C I A E+VMRA++ VYH+ CF C C
Sbjct: 76 LTCFARDGNIYCKEDYYRLF--AGRCSRCRAGISATELVMRARDLVYHVACFTCASCGTP 133
Query: 153 FCVGDRFYLCDNKILCEYDYE 173
GD F D + C YE
Sbjct: 134 LNKGDYFGQRDGLVYCRPHYE 154
>gi|270009219|gb|EFA05667.1| lim1 [Tribolium castaneum]
Length = 511
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 71/127 (55%), Gaps = 6/127 (4%)
Query: 47 ASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKR 106
A+G L CA+C K I ++FLL L+ WH DC++C C L + + + N + C+
Sbjct: 71 AAGMLISCAACDKPILDKFLLNVLERTWHADCVRCFDCHAPLTD---KCFSRENKLFCRN 127
Query: 107 DYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFY-LCDNK 165
D+ R +GT C C + I ++V +A++ V+HL CF C C + G+ Y L DNK
Sbjct: 128 DFFRRYGTK--CGGCGQGISPSDLVRKARDKVFHLNCFTCLVCRKQLSTGEELYVLDDNK 185
Query: 166 ILCEYDY 172
+C+ DY
Sbjct: 186 FICKDDY 192
>gi|397473228|ref|XP_003808119.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Pan paniscus]
gi|426362990|ref|XP_004048631.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Gorilla gorilla
gorilla]
gi|21753589|dbj|BAC04371.1| unnamed protein product [Homo sapiens]
gi|119607983|gb|EAW87577.1| LIM homeobox 2, isoform CRA_b [Homo sapiens]
Length = 397
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 69/128 (53%), Gaps = 10/128 (7%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDY--LR 110
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY
Sbjct: 36 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYSPS 93
Query: 111 LFG-----TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNK 165
L G + CA C I A EMVMRA++ VYHL CF C CN GD F + D+
Sbjct: 94 LHGPYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSL 153
Query: 166 ILCEYDYE 173
+ C +E
Sbjct: 154 VYCRLHFE 161
>gi|332229977|ref|XP_003264162.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Nomascus
leucogenys]
Length = 414
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 69/128 (53%), Gaps = 10/128 (7%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDY--LR 110
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYSPS 110
Query: 111 LFG-----TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNK 165
L G + CA C I A EMVMRA++ VYHL CF C CN GD F + D+
Sbjct: 111 LHGPYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSL 170
Query: 166 ILCEYDYE 173
+ C +E
Sbjct: 171 VYCRLHFE 178
>gi|297685312|ref|XP_002820236.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Pongo abelii]
Length = 414
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 69/128 (53%), Gaps = 10/128 (7%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDY--LR 110
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYSPS 110
Query: 111 LFG-----TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNK 165
L G + CA C I A EMVMRA++ VYHL CF C CN GD F + D+
Sbjct: 111 LHGPYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSL 170
Query: 166 ILCEYDYE 173
+ C +E
Sbjct: 171 VYCRLHFE 178
>gi|28569978|dbj|BAC57891.1| transcription factor islet-1 isoform beta [Mus musculus]
gi|148686420|gb|EDL18367.1| ISL1 transcription factor, LIM/homeodomain, isoform CRA_a [Mus
musculus]
Length = 326
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 80/145 (55%), Gaps = 4/145 (2%)
Query: 54 CASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLF 112
C CG +I ++++L+ + DL WH CLKC C+ L E T + + CKRDY+RL+
Sbjct: 17 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDE-SCTCFVRDGKTYCKRDYIRLY 75
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
G CA C+ + VMRA++ VYH+ECF C C+ + GD F L ++ + C D+
Sbjct: 76 GIK--CAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADH 133
Query: 173 EERQVFANIAYNPSSLAHLRRQVTL 197
+ + + A +P S H R + +
Sbjct: 134 DVVERASLGAGDPLSPLHPARPLQM 158
>gi|442630038|ref|NP_001261380.1| arrowhead, isoform D [Drosophila melanogaster]
gi|440215264|gb|AGB94075.1| arrowhead, isoform D [Drosophila melanogaster]
Length = 271
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 71/124 (57%), Gaps = 3/124 (2%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L+ CA+CG+ I++RF L+ WH CL+C C C L S ++ + CK DY +
Sbjct: 5 LRSCAACGEPISDRFFLEVGGCSWHAHCLRCCMCMCPLDRQQSCFIRERQ-VYCKADYSK 63
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
FG C+ C + I A + V RA+ V+HL CFAC QC + G++F L D+++LC+
Sbjct: 64 NFGAK--CSKCCRGISASDWVRRARELVFHLACFACDQCGRQLSTGEQFALMDDRVLCKA 121
Query: 171 DYEE 174
Y E
Sbjct: 122 HYLE 125
>gi|442630036|ref|NP_001261379.1| arrowhead, isoform C [Drosophila melanogaster]
gi|440215263|gb|AGB94074.1| arrowhead, isoform C [Drosophila melanogaster]
Length = 287
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 71/124 (57%), Gaps = 3/124 (2%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L+ CA+CG+ I++RF L+ WH CL+C C C L S ++ + CK DY +
Sbjct: 5 LRSCAACGEPISDRFFLEVGGCSWHAHCLRCCMCMCPLDRQQSCFIRERQ-VYCKADYSK 63
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
FG C+ C + I A + V RA+ V+HL CFAC QC + G++F L D+++LC+
Sbjct: 64 NFGAK--CSKCCRGISASDWVRRARELVFHLACFACDQCGRQLSTGEQFALMDDRVLCKA 121
Query: 171 DYEE 174
Y E
Sbjct: 122 HYLE 125
>gi|355786560|gb|EHH66743.1| hypothetical protein EGM_03791, partial [Macaca fascicularis]
Length = 306
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 68/120 (56%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C+C+ + + + + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQC--CECKTN-LSEKCFSREGKLYCKNDFFRRFG 61
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C + I ++V +A++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 62 TK--CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDY 119
>gi|348516128|ref|XP_003445591.1| PREDICTED: LIM homeobox transcription factor 1-beta.1-like
[Oreochromis niloticus]
Length = 399
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 74/142 (52%), Gaps = 5/142 (3%)
Query: 35 ASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGST 94
+ T G + G C C + I++RFL++ D WHE+CL+C C L ++
Sbjct: 37 SGQATLGVMLGTECHHRSVCEGCQRPISDRFLMRVNDSSWHEECLQCTVCQQPLT---NS 93
Query: 95 LYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFC 154
Y + + CK DY +LF T C+ C + I E VMRA VYHL CF C C+ +
Sbjct: 94 CYFRERKLYCKHDYQQLFATK--CSGCMEKIAPTEFVMRALECVYHLNCFCCCVCDRQLR 151
Query: 155 VGDRFYLCDNKILCEYDYEERQ 176
GD F L + ++LC+ DYE +
Sbjct: 152 KGDEFVLKEGQLLCKIDYEREK 173
>gi|18858905|ref|NP_571037.1| insulin gene enhancer protein isl-1 [Danio rerio]
gi|1708559|sp|P53405.1|ISL1_DANRE RecName: Full=Insulin gene enhancer protein isl-1; Short=Islet-1
gi|497898|dbj|BAA04670.1| insulin gene enhancer binding protein [Danio rerio]
gi|38173895|gb|AAH60892.1| Isl1 protein [Danio rerio]
Length = 349
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 78/145 (53%), Gaps = 4/145 (2%)
Query: 54 CASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLF 112
C CG +I ++++L+ + DL WH CLKC C+ L E T + + CKRDY+RL+
Sbjct: 17 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDE-SCTCFVRDGKTYCKRDYIRLY 75
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
G CA C + VMRA++ VYH+ECF C C+ + GD F L ++ + C D+
Sbjct: 76 GIK--CAKCNIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADH 133
Query: 173 EERQVFANIAYNPSSLAHLRRQVTL 197
+ + A +P S H R + +
Sbjct: 134 DVVERATMGAGDPLSPLHPARPLQM 158
>gi|345487079|ref|XP_001599685.2| PREDICTED: LIM/homeobox protein Lhx9-like [Nasonia vitripennis]
Length = 406
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 66/128 (51%), Gaps = 4/128 (3%)
Query: 47 ASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGS-TLYQKANLILCK 105
+SG C CG+ I ER+ L+A D WH CL+C C CRL T + + I CK
Sbjct: 39 SSGPSLACGGCGREIAERWYLRAADRPWHCGCLRC--CHCRLPLAAELTCFARDGNIYCK 96
Query: 106 RDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNK 165
DY RLF + C+ C I A E+VMRA++ VYH+ CF C C GD F D
Sbjct: 97 EDYYRLFAVS-RCSRCRAGISATELVMRARDLVYHVACFTCASCGTPLNKGDHFGQRDGL 155
Query: 166 ILCEYDYE 173
+ C YE
Sbjct: 156 VYCRPHYE 163
>gi|156552953|ref|XP_001603153.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Nasonia
vitripennis]
Length = 458
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 66/121 (54%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLF 112
C CG RI ++++L+ A DL WH CLKC C L E T + + CK DY+RLF
Sbjct: 47 CVGCGGRIHDQWILRVAPDLEWHAACLKCAACQQFLDE-SCTCFVRDGKTYCKDDYVRLF 105
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
GT C C + + VMRAK +YHLECF C C + GD F L + + C +D+
Sbjct: 106 GTK--CDKCRQSFNKNDFVMRAKTKIYHLECFRCSACMRQLVPGDEFALRSDGLFCRHDH 163
Query: 173 E 173
+
Sbjct: 164 D 164
>gi|195337236|ref|XP_002035235.1| GM14592 [Drosophila sechellia]
gi|194128328|gb|EDW50371.1| GM14592 [Drosophila sechellia]
Length = 275
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 71/124 (57%), Gaps = 3/124 (2%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L+ CA+CG+ I++RF L+ WH CL+C C C L S ++ + CK DY +
Sbjct: 5 LRSCAACGEPISDRFFLEVGGCSWHAHCLRCCMCMCPLDRQQSCFIRERQ-VYCKADYSK 63
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
FG C+ C + I A + V RA+ V+HL CFAC QC + G++F L D+++LC+
Sbjct: 64 NFGAK--CSKCCRGISASDWVRRARELVFHLACFACDQCGRQLSTGEQFALMDDRVLCKA 121
Query: 171 DYEE 174
Y E
Sbjct: 122 HYLE 125
>gi|57613|emb|CAA37349.1| insulin gene enhancer binding protein [Rattus rattus]
Length = 313
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 80/145 (55%), Gaps = 4/145 (2%)
Query: 54 CASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLF 112
C CG +I ++++L+ + DL WH CLKC C+ L E T + + CKRDY+RL+
Sbjct: 14 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDE-SCTCFVRDGKTYCKRDYIRLY 72
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
G CA C+ + VMRA++ VYH+ECF C C+ + GD F L ++ + C D+
Sbjct: 73 GIK--CAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADH 130
Query: 173 EERQVFANIAYNPSSLAHLRRQVTL 197
+ + + A +P S H R + +
Sbjct: 131 DVVERASLGAGDPLSPLHPARPLQM 155
>gi|24656992|ref|NP_728906.1| arrowhead, isoform B [Drosophila melanogaster]
gi|194866170|ref|XP_001971791.1| GG15164 [Drosophila erecta]
gi|195491511|ref|XP_002093592.1| GE21383 [Drosophila yakuba]
gi|62510367|sp|Q8IRC7.1|AWH_DROME RecName: Full=LIM/homeobox protein Awh; AltName: Full=Protein
arrowhead
gi|23092944|gb|AAN11572.1| arrowhead, isoform B [Drosophila melanogaster]
gi|94400621|gb|ABF17921.1| FI01007p [Drosophila melanogaster]
gi|190653574|gb|EDV50817.1| GG15164 [Drosophila erecta]
gi|194179693|gb|EDW93304.1| GE21383 [Drosophila yakuba]
Length = 275
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 71/124 (57%), Gaps = 3/124 (2%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L+ CA+CG+ I++RF L+ WH CL+C C C L S ++ + CK DY +
Sbjct: 5 LRSCAACGEPISDRFFLEVGGCSWHAHCLRCCMCMCPLDRQQSCFIRERQ-VYCKADYSK 63
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
FG C+ C + I A + V RA+ V+HL CFAC QC + G++F L D+++LC+
Sbjct: 64 NFGAK--CSKCCRGISASDWVRRARELVFHLACFACDQCGRQLSTGEQFALMDDRVLCKA 121
Query: 171 DYEE 174
Y E
Sbjct: 122 HYLE 125
>gi|242009361|ref|XP_002425456.1| LIM/homeobox protein Lhx9, putative [Pediculus humanus corporis]
gi|212509292|gb|EEB12718.1| LIM/homeobox protein Lhx9, putative [Pediculus humanus corporis]
Length = 433
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 69/124 (55%), Gaps = 4/124 (3%)
Query: 51 LKECASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYL 109
L C CG +I ++++L+ A DL WH CLKC C L E T + + CKRDY+
Sbjct: 8 LSLCVGCGAQIHDQYILRVAPDLEWHAACLKCAECHQFLDE-NCTCFVRDGKTYCKRDYV 66
Query: 110 RLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCE 169
RLFGT C C + + VMRAK +YH++CF C C + GD F L ++ + C+
Sbjct: 67 RLFGTK--CDKCGQSFSKNDFVMRAKTKIYHVDCFRCTACERQLVPGDEFALREDGLFCK 124
Query: 170 YDYE 173
D+E
Sbjct: 125 EDHE 128
>gi|355564712|gb|EHH21212.1| hypothetical protein EGK_04224, partial [Macaca mulatta]
Length = 293
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 68/120 (56%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C+C+ + + + + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQC--CECKTN-LSEKCFSREGKLYCKNDFFRRFG 61
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C + I ++V +A++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 62 TK--CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDY 119
>gi|17945534|gb|AAL48819.1| RE24382p [Drosophila melanogaster]
Length = 275
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 71/124 (57%), Gaps = 3/124 (2%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L+ CA+CG+ I++RF L+ WH CL+C C C L S ++ + CK DY +
Sbjct: 5 LRSCAACGEPISDRFFLEVGGCSWHAHCLRCCMCMCPLDRQQSCFIRERQ-VYCKADYSK 63
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
FG C+ C + I A + V RA+ V+HL CFAC QC + G++F L D+++LC+
Sbjct: 64 NFGAK--CSKCCRGISASDWVRRARELVFHLACFACDQCGRQLSTGEQFALMDDRVLCKA 121
Query: 171 DYEE 174
Y E
Sbjct: 122 HYLE 125
>gi|440908262|gb|ELR58305.1| LIM/homeobox protein Lhx2, partial [Bos grunniens mutus]
Length = 410
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 67/128 (52%), Gaps = 10/128 (7%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY
Sbjct: 50 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYSPS 107
Query: 113 GTTGY-------CAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNK 165
Y CA C I A EMVMRA++ VYHL CF C CN GD F + D+
Sbjct: 108 LDGPYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSL 167
Query: 166 ILCEYDYE 173
+ C +E
Sbjct: 168 VYCRLHFE 175
>gi|242023961|ref|XP_002432399.1| LIM/homeobox protein Lhx2, putative [Pediculus humanus corporis]
gi|212517822|gb|EEB19661.1| LIM/homeobox protein Lhx2, putative [Pediculus humanus corporis]
Length = 383
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 67/132 (50%), Gaps = 3/132 (2%)
Query: 44 AGGASGG-LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLI 102
+GG S CA CG RI +R+ L A+D WH CLKC C L + T + + I
Sbjct: 20 SGGESASCPTACAGCGGRILDRYYLLAVDRQWHSPCLKCTECKSPL-DTELTCFARDGNI 78
Query: 103 LCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC 162
CK DY RLF C+ C I A E+VMRAK+ V+H+ CF C C GD F +
Sbjct: 79 YCKEDYYRLFAIK-RCSRCQTGISASELVMRAKDMVFHINCFTCTSCGIPLSKGDHFGMR 137
Query: 163 DNKILCEYDYEE 174
+ + C YE
Sbjct: 138 NGLVYCHPHYEH 149
>gi|431898812|gb|ELK07182.1| LIM/homeobox protein Lhx2 [Pteropus alecto]
Length = 414
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 67/128 (52%), Gaps = 10/128 (7%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYSPS 110
Query: 113 GTTGY-------CAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNK 165
Y CA C I A EMVMRA++ VYHL CF C CN GD F + D+
Sbjct: 111 FDGPYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSL 170
Query: 166 ILCEYDYE 173
+ C +E
Sbjct: 171 VYCRLHFE 178
>gi|47225812|emb|CAF98292.1| unnamed protein product [Tetraodon nigroviridis]
Length = 360
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 71/125 (56%), Gaps = 4/125 (3%)
Query: 49 GGLKECASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 107
G+ C CG +I ++++++ + DL WH CLKC C L E T + + CKRD
Sbjct: 22 SGIAMCVGCGSQIHDQYIMRVSPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRD 80
Query: 108 YLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKIL 167
Y R+FG CA C + ++VMRA++NVYH+ECF C C GD F L ++++L
Sbjct: 81 YARIFGIK--CAKCNVGFCSSDLVMRARDNVYHMECFRCSVCCRHLLPGDEFSLREDELL 138
Query: 168 CEYDY 172
C D+
Sbjct: 139 CRADH 143
>gi|281360182|ref|NP_001163058.1| apterous, isoform C [Drosophila melanogaster]
gi|17862966|gb|AAL39960.1| SD05618p [Drosophila melanogaster]
gi|272432345|gb|ACZ94338.1| apterous, isoform C [Drosophila melanogaster]
Length = 468
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 68/122 (55%), Gaps = 2/122 (1%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L +C+ CG++I +RF L A++ WH CL+C C L E S+ Y + I CK DY
Sbjct: 144 LDDCSGCGRQIQDRFYLSAVEKRWHASCLQCYACRQPL-ERESSCYSRDGNIYCKNDYYS 202
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
FGT C+ C I + E+VMRA+N V+H+ CF C C+ GD++ + D I C
Sbjct: 203 FFGTR-RCSRCLASISSNELVMRARNLVFHVNCFCCTVCHTPLTKGDQYGIIDALIYCRT 261
Query: 171 DY 172
Y
Sbjct: 262 HY 263
>gi|319740961|gb|ADV69000.1| lim-homeobox 2/9 [Patiria miniata]
Length = 304
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 66/121 (54%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG I +R+ L A D WH +CL+C C+C++ + T + K I CK Y R F
Sbjct: 48 CAGCGGPIQDRYYLLAADQQWHTECLRC--CECKVTLDNELTCFAKDGGIYCKEHYFRRF 105
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
G CA C I A EMVMRA++ VYHL CF C C+ GD + + D ++ C Y
Sbjct: 106 GVK-KCARCGTGIAAHEMVMRARSLVYHLSCFTCSACSMALTTGDYYGMRDTQVYCRLHY 164
Query: 173 E 173
E
Sbjct: 165 E 165
>gi|148227168|ref|NP_001083902.1| LIM homeobox transcription factor 1-beta.1 [Xenopus laevis]
gi|82216057|sp|Q8UVR3.1|LMX1B_XENLA RecName: Full=LIM homeobox transcription factor 1-beta.1; AltName:
Full=LIM homeobox protein 1b; Short=Xlmx1b
gi|16974694|gb|AAL32444.1|AF414086_1 LIM homeobox protein 1b [Xenopus laevis]
Length = 400
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 80/159 (50%), Gaps = 10/159 (6%)
Query: 18 FDSLRLATHYQVDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHED 77
D++++ H + T G L G C C + I++RFL++ + WHE+
Sbjct: 25 LDTIKMEDH-----PLRTGTATLGVLLGSECQHQAVCEGCQRPISDRFLMRVNEASWHEE 79
Query: 78 CLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNN 137
CL+C C L ++ Y + + CK+DY +LF C+ C + I E VMRA
Sbjct: 80 CLQCTVCQQPLT---TSCYFRDRKLFCKQDYQQLFA--AKCSGCMEKIAPTEFVMRALEC 134
Query: 138 VYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQ 176
VYHL CF C C + GD F L + ++LC+ DYE+ +
Sbjct: 135 VYHLSCFCCCVCERQLRKGDEFVLKEGQLLCKSDYEKEK 173
>gi|45382271|ref|NP_990745.1| insulin gene enhancer protein ISL-1 [Gallus gallus]
gi|1708560|sp|P50211.1|ISL1_CHICK RecName: Full=Insulin gene enhancer protein ISL-1; Short=Islet-1
gi|531179|gb|AAA62171.1| amino acid feature: LIM1, bp 331 .. 483; amino acid feature: LIM2,
bp 517 .. 669; amino acid feature: homeodomain, bp 820
.. 999 [Gallus gallus]
Length = 349
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 79/145 (54%), Gaps = 4/145 (2%)
Query: 54 CASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLF 112
C CG +I ++++L+ + DL WH CLKC C+ L E T + + CKRDY+RL+
Sbjct: 17 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDET-CTCFVRDGKTYCKRDYIRLY 75
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
G CA C+ + VMRA+ VYH+ECF C C+ + GD F L ++ + C D+
Sbjct: 76 GIK--CAKCSIGFSKNDFVMRARAKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADH 133
Query: 173 EERQVFANIAYNPSSLAHLRRQVTL 197
+ + + A +P S H R + +
Sbjct: 134 DVVERASLGAGDPLSPLHPARPLQM 158
>gi|241688853|ref|XP_002411721.1| LIM domain containing protein [Ixodes scapularis]
gi|215504541|gb|EEC14035.1| LIM domain containing protein [Ixodes scapularis]
Length = 173
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 72/129 (55%), Gaps = 4/129 (3%)
Query: 46 GASGGLKECASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILC 104
G+S + C CG I ++++L+ A DL WH CLKC C L E T + + C
Sbjct: 19 GSSLSRRVCVGCGAPIRDQYILRVAPDLEWHAACLKCADCQQFLDET-CTCFVRDGKTYC 77
Query: 105 KRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDN 164
KRDY+RLFG C+ C + + VMRA+ ++YHL+CF CQ C + GD F L D+
Sbjct: 78 KRDYVRLFGAK--CSKCQQGFSRTDFVMRARQHIYHLDCFRCQACARQLIPGDEFALRDD 135
Query: 165 KILCEYDYE 173
+ C D++
Sbjct: 136 GLFCRADHD 144
>gi|442631924|ref|NP_001261754.1| CG32105, isoform C [Drosophila melanogaster]
gi|440215685|gb|AGB94447.1| CG32105, isoform C [Drosophila melanogaster]
Length = 639
Score = 90.5 bits (223), Expect = 3e-16, Method: Composition-based stats.
Identities = 53/149 (35%), Positives = 77/149 (51%), Gaps = 8/149 (5%)
Query: 31 LTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGE 90
L+ D S T G + + C CG++I +RFL+ D WHE CL CC C + +
Sbjct: 253 LSADCSGRTVGHIK--CEKNFELCEGCGQKIHDRFLMNVGDANWHEQCL--ACCYCGM-Q 307
Query: 91 VGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRA-KNNVYHLECFACQQC 149
+ T Y + + + CK DY RLFG C++C I E+VMR N V+HL CF C C
Sbjct: 308 LHHTCYVRNSKLYCKMDYDRLFGVK--CSSCCHAILPQELVMRPIPNFVFHLPCFVCYAC 365
Query: 150 NHRFCVGDRFYLCDNKILCEYDYEERQVF 178
G++F L D ++ C E+++F
Sbjct: 366 RLPLQKGEQFMLRDGQLFCYRHDLEKEMF 394
>gi|195353746|ref|XP_002043364.1| GM16501 [Drosophila sechellia]
gi|194127487|gb|EDW49530.1| GM16501 [Drosophila sechellia]
Length = 535
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 68/122 (55%), Gaps = 2/122 (1%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L +C+ CG++I +RF L A++ WH CL+C C L E S+ Y + I CK DY
Sbjct: 211 LDDCSGCGRQIQDRFYLSAVEKRWHASCLQCYACRQPL-ERESSCYSRDGNIYCKNDYYS 269
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
FGT C+ C I + E+VMRA+N V+H+ CF C C+ GD++ + D I C
Sbjct: 270 FFGTR-RCSRCLASISSNELVMRARNLVFHVNCFCCTVCHTPLTKGDQYGIIDALIYCRT 328
Query: 171 DY 172
Y
Sbjct: 329 HY 330
>gi|194864184|ref|XP_001970812.1| ap [Drosophila erecta]
gi|190662679|gb|EDV59871.1| ap [Drosophila erecta]
Length = 469
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 68/122 (55%), Gaps = 2/122 (1%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L +C+ CG++I +RF L A++ WH CL+C C L E S+ Y + I CK DY
Sbjct: 145 LDDCSGCGRQIQDRFYLSAVEKRWHASCLQCYACRQPL-ERESSCYSRDGNIYCKNDYYS 203
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
FGT C+ C I + E+VMRA+N V+H+ CF C C+ GD++ + D I C
Sbjct: 204 FFGTR-RCSRCLASISSNELVMRARNLVFHVNCFCCTVCHTPLTKGDQYGIIDALIYCRT 262
Query: 171 DY 172
Y
Sbjct: 263 HY 264
>gi|195475694|ref|XP_002090119.1| GE19443 [Drosophila yakuba]
gi|194176220|gb|EDW89831.1| GE19443 [Drosophila yakuba]
Length = 469
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 68/122 (55%), Gaps = 2/122 (1%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L +C+ CG++I +RF L A++ WH CL+C C L E S+ Y + I CK DY
Sbjct: 145 LDDCSGCGRQIQDRFYLSAVEKRWHASCLQCYACRQPL-ERESSCYSRDGNIYCKNDYYS 203
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
FGT C+ C I + E+VMRA+N V+H+ CF C C+ GD++ + D I C
Sbjct: 204 FFGTR-RCSRCLASISSNELVMRARNLVFHVNCFCCTVCHTPLTKGDQYGIIDALIYCRS 262
Query: 171 DY 172
Y
Sbjct: 263 HY 264
>gi|410976694|ref|XP_003994749.1| PREDICTED: LIM/homeobox protein Lhx5 [Felis catus]
Length = 332
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 67/120 (55%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C+C+ + + + + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQC--CECKT-NLSEKCFSREGKLYCKNDFFRRFG 61
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T CA C + I ++V +A+ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 62 TK--CAGCGQGISPSDLVRKARGKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDY 119
>gi|24585889|ref|NP_724428.1| apterous, isoform A [Drosophila melanogaster]
gi|195580840|ref|XP_002080242.1| GD10352 [Drosophila simulans]
gi|231559|sp|P29673.1|APTE_DROME RecName: Full=Protein apterous
gi|7601|emb|CAA46276.1| developmental regulatory protein [Drosophila melanogaster]
gi|157822|gb|AAA28673.1| LIM-homeodomain apterous protein [Drosophila melanogaster]
gi|7302219|gb|AAF57314.1| apterous, isoform A [Drosophila melanogaster]
gi|28912908|gb|AAO61758.1| HL02012p [Drosophila melanogaster]
gi|194192251|gb|EDX05827.1| GD10352 [Drosophila simulans]
gi|220942502|gb|ACL83794.1| ap-PA [synthetic construct]
gi|220952712|gb|ACL88899.1| ap-PA [synthetic construct]
Length = 469
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 68/122 (55%), Gaps = 2/122 (1%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L +C+ CG++I +RF L A++ WH CL+C C L E S+ Y + I CK DY
Sbjct: 145 LDDCSGCGRQIQDRFYLSAVEKRWHASCLQCYACRQPL-ERESSCYSRDGNIYCKNDYYS 203
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
FGT C+ C I + E+VMRA+N V+H+ CF C C+ GD++ + D I C
Sbjct: 204 FFGTR-RCSRCLASISSNELVMRARNLVFHVNCFCCTVCHTPLTKGDQYGIIDALIYCRT 262
Query: 171 DY 172
Y
Sbjct: 263 HY 264
>gi|195587560|ref|XP_002083529.1| GD13784 [Drosophila simulans]
gi|194195538|gb|EDX09114.1| GD13784 [Drosophila simulans]
Length = 278
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 71/125 (56%), Gaps = 2/125 (1%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L+ CA+CG+ I++RF L+ WH CL+C C C L S ++ + CK DY +
Sbjct: 5 LRSCAACGEPISDRFFLEVGGCSWHAHCLRCCMCMCPLDRQQSCFIRERQ-VYCKADYSK 63
Query: 111 LFGTTGYCAA-CTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCE 169
FG AA C + I A + V RA+ V+HL CFAC QC + G++F L D+++LC+
Sbjct: 64 NFGANDSIAARCCRGISASDWVRRARELVFHLACFACDQCGRQLSTGEQFALMDDRVLCK 123
Query: 170 YDYEE 174
Y E
Sbjct: 124 AHYLE 128
>gi|345132131|gb|AEN75258.1| Lim1 [Neanthes arenaceodentata]
Length = 498
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 66/120 (55%), Gaps = 6/120 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RFLL LD WH C++C C L + + + + C+ D+ R FG
Sbjct: 26 CAGCERPILDRFLLNVLDRAWHAKCVQCVECRSNLTD---KCFSRDGKLYCREDFFRRFG 82
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 172
T C C++ I ++V RA+N V+HL+CF C C + G+ Y+ D NK +C+ DY
Sbjct: 83 TK--CGGCSQGISPNDLVRRARNKVFHLKCFTCMVCRKQLSTGEELYVLDENKFICKEDY 140
>gi|170034020|ref|XP_001844873.1| arrowhead [Culex quinquefasciatus]
gi|167875281|gb|EDS38664.1| arrowhead [Culex quinquefasciatus]
Length = 304
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 69/124 (55%), Gaps = 3/124 (2%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L+ C +CG+ I++++LL WH CL+C C L + S + + I CK DY
Sbjct: 7 LRSCTACGEPISDQYLLDVGGCSWHSACLRCCICHTPLDQQPS-CFLRDRQIYCKADYAS 65
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
FG CA C++ I A + V RA+ ++HL CFAC C + G++F L D+K+LC+
Sbjct: 66 TFGAK--CARCSRSISASDWVRRARKMIFHLACFACDSCGRQLSTGEQFALADDKVLCKK 123
Query: 171 DYEE 174
Y E
Sbjct: 124 HYSE 127
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.329 0.140 0.470
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,186,114,093
Number of Sequences: 23463169
Number of extensions: 119205363
Number of successful extensions: 419764
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2019
Number of HSP's successfully gapped in prelim test: 3741
Number of HSP's that attempted gapping in prelim test: 401692
Number of HSP's gapped (non-prelim): 12176
length of query: 204
length of database: 8,064,228,071
effective HSP length: 136
effective length of query: 68
effective length of database: 9,168,204,383
effective search space: 623437898044
effective search space used: 623437898044
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 73 (32.7 bits)