BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7480
(204 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3B8H4|RBTN1_XENLA Rhombotin-1 OS=Xenopus laevis GN=lmo1 PE=2 SV=1
Length = 156
Score = 211 bits (537), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 98/135 (72%), Positives = 115/135 (85%)
Query: 43 LAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLI 102
L+ G K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLI
Sbjct: 13 LSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLI 72
Query: 103 LCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC 162
LC+RDYLRLFGTTG CAAC+K+IPAFEMVMRA++NVYHL+CFACQ CN RFCVGD+F+L
Sbjct: 73 LCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLK 132
Query: 163 DNKILCEYDYEERQV 177
+N ILC+ DYEE Q+
Sbjct: 133 NNMILCQMDYEEGQL 147
>sp|P25800|RBTN1_HUMAN Rhombotin-1 OS=Homo sapiens GN=LMO1 PE=2 SV=1
Length = 156
Score = 211 bits (537), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 98/135 (72%), Positives = 115/135 (85%)
Query: 43 LAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLI 102
L+ G K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLI
Sbjct: 13 LSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLI 72
Query: 103 LCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC 162
LC+RDYLRLFGTTG CAAC+K+IPAFEMVMRA++NVYHL+CFACQ CN RFCVGD+F+L
Sbjct: 73 LCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLK 132
Query: 163 DNKILCEYDYEERQV 177
+N ILC+ DYEE Q+
Sbjct: 133 NNMILCQMDYEEGQL 147
>sp|Q0P5B3|RBTN1_BOVIN Rhombotin-1 OS=Bos taurus GN=LMO1 PE=2 SV=1
Length = 156
Score = 211 bits (537), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 98/135 (72%), Positives = 115/135 (85%)
Query: 43 LAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLI 102
L+ G K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLI
Sbjct: 13 LSVQPKGKQKGCAGCNRKIKDRYLLKALDQYWHEDCLKCACCDCRLGEVGSTLYTKANLI 72
Query: 103 LCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC 162
LC+RDYLRLFGTTG CAAC+K+IPAFEMVMRA++NVYHL+CFACQ CN RFCVGD+F+L
Sbjct: 73 LCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLK 132
Query: 163 DNKILCEYDYEERQV 177
+N ILC+ DYEE Q+
Sbjct: 133 NNMILCQMDYEEGQL 147
>sp|Q8JFQ2|RBTN1_DANRE Rhombotin-1 OS=Danio rerio GN=lmo1 PE=2 SV=1
Length = 155
Score = 211 bits (536), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 98/135 (72%), Positives = 115/135 (85%)
Query: 43 LAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLI 102
L+ G K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLI
Sbjct: 12 LSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLI 71
Query: 103 LCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC 162
LC+RDYLRLFGTTG CAAC+K+IPAFEMVMRA++NVYHL+CFACQ CN RFCVGD+F+L
Sbjct: 72 LCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLK 131
Query: 163 DNKILCEYDYEERQV 177
+N ILC+ DYEE Q+
Sbjct: 132 NNMILCQMDYEEGQL 146
>sp|Q924W9|RBTN1_MOUSE Rhombotin-1 OS=Mus musculus GN=Lmo1 PE=2 SV=1
Length = 156
Score = 209 bits (531), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 97/132 (73%), Positives = 113/132 (85%)
Query: 43 LAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLI 102
L+ G K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLI
Sbjct: 13 LSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLI 72
Query: 103 LCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC 162
LC+RDYLRLFGTTG CAAC+K+IPAFEMVMRA++NVYHL+CFACQ CN RFCVGD+F+L
Sbjct: 73 LCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLK 132
Query: 163 DNKILCEYDYEE 174
+N ILC+ DYEE
Sbjct: 133 NNMILCQVDYEE 144
>sp|Q99MB5|LMO3_RAT LIM domain only protein 3 OS=Rattus norvegicus GN=Lmo3 PE=2 SV=2
Length = 145
Score = 208 bits (529), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 97/132 (73%), Positives = 113/132 (85%)
Query: 43 LAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLI 102
L+ G K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLI
Sbjct: 2 LSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLI 61
Query: 103 LCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC 162
LC+RDYLRLFGTTG CAAC+K+IPAFEMVMRA++NVYHL+CFACQ CN RFCVGD+F+L
Sbjct: 62 LCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLK 121
Query: 163 DNKILCEYDYEE 174
+N ILC+ DYEE
Sbjct: 122 NNMILCQTDYEE 133
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 49 GGLKECASCGKRITE-RFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 107
G CA+C K I +++A D +H DC C C+ R VG + K N+ILC+ D
Sbjct: 72 GTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTD 130
Query: 108 YLRLFGTTGY 117
Y GY
Sbjct: 131 YEEGLMKEGY 140
>sp|Q9YH16|LMO3_XENLA LIM domain only protein 3 OS=Xenopus laevis GN=lmo3 PE=2 SV=1
Length = 156
Score = 206 bits (524), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 95/123 (77%), Positives = 108/123 (87%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRL
Sbjct: 22 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 81
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
FG TG CAAC+K+IPAFEMVMRAK NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ D
Sbjct: 82 FGVTGNCAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 141
Query: 172 YEE 174
YEE
Sbjct: 142 YEE 144
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 49 GGLKECASCGKRITE-RFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 107
G CA+C K I +++A + +H DC C C+ R VG + K N+ILC+ D
Sbjct: 83 GVTGNCAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTD 141
Query: 108 YLRLFGTTGYCA 119
Y GY A
Sbjct: 142 YEEGLMKEGYSA 153
>sp|Q5RBW7|LMO3_PONAB LIM domain only protein 3 OS=Pongo abelii GN=LMO3 PE=2 SV=1
Length = 145
Score = 206 bits (524), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 95/123 (77%), Positives = 109/123 (88%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRL
Sbjct: 11 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 70
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
FG TG CAAC+K+IPAFEMVMRAK+NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ D
Sbjct: 71 FGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 130
Query: 172 YEE 174
YEE
Sbjct: 131 YEE 133
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 49 GGLKECASCGKRITE-RFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 107
G CA+C K I +++A D +H DC C C+ R VG + K N+ILC+ D
Sbjct: 72 GVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTD 130
Query: 108 YLRLFGTTGY 117
Y GY
Sbjct: 131 YEEGLMKEGY 140
>sp|Q8BZL8|LMO3_MOUSE LIM domain only protein 3 OS=Mus musculus GN=Lmo3 PE=2 SV=1
Length = 145
Score = 206 bits (524), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 95/123 (77%), Positives = 109/123 (88%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRL
Sbjct: 11 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 70
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
FG TG CAAC+K+IPAFEMVMRAK+NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ D
Sbjct: 71 FGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 130
Query: 172 YEE 174
YEE
Sbjct: 131 YEE 133
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 49 GGLKECASCGKRITE-RFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 107
G CA+C K I +++A D +H DC C C+ R VG + K N+ILC+ D
Sbjct: 72 GVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTD 130
Query: 108 YLRLFGTTGY 117
Y GY
Sbjct: 131 YEEGLMKEGY 140
>sp|Q8TAP4|LMO3_HUMAN LIM domain only protein 3 OS=Homo sapiens GN=LMO3 PE=2 SV=1
Length = 145
Score = 206 bits (524), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 95/123 (77%), Positives = 109/123 (88%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRL
Sbjct: 11 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 70
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
FG TG CAAC+K+IPAFEMVMRAK+NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ D
Sbjct: 71 FGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 130
Query: 172 YEE 174
YEE
Sbjct: 131 YEE 133
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 49 GGLKECASCGKRITE-RFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 107
G CA+C K I +++A D +H DC C C+ R VG + K N+ILC+ D
Sbjct: 72 GVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTD 130
Query: 108 YLRLFGTTGY 117
Y GY
Sbjct: 131 YEEGLMKEGY 140
>sp|Q2KIA3|LMO3_BOVIN LIM domain only protein 3 OS=Bos taurus GN=LMO3 PE=2 SV=1
Length = 145
Score = 206 bits (524), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 95/123 (77%), Positives = 109/123 (88%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRL
Sbjct: 11 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 70
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
FG TG CAAC+K+IPAFEMVMRAK+NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ D
Sbjct: 71 FGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 130
Query: 172 YEE 174
YEE
Sbjct: 131 YEE 133
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 49 GGLKECASCGKRITE-RFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 107
G CA+C K I +++A D +H DC C C+ R VG + K N+ILC+ D
Sbjct: 72 GVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTD 130
Query: 108 YLRLFGTTGY 117
Y GY
Sbjct: 131 YEEGLMKEGY 140
>sp|Q503U0|LMO3_DANRE LIM domain only protein 3 OS=Danio rerio GN=lmo3 PE=2 SV=1
Length = 145
Score = 205 bits (522), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 95/123 (77%), Positives = 108/123 (87%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
K CA C ++I +R+LLKALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRL
Sbjct: 11 KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL 70
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
FG TG CAAC+K+IPAFEMVMRAK NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ D
Sbjct: 71 FGVTGNCAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTD 130
Query: 172 YEE 174
YEE
Sbjct: 131 YEE 133
Score = 38.5 bits (88), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 49 GGLKECASCGKRITE-RFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 107
G CA+C K I +++A + +H DC C C+ R VG + K N+ILC+ D
Sbjct: 72 GVTGNCAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTD 130
Query: 108 YLRLFGTTGY 117
Y GY
Sbjct: 131 YEEGLMKEGY 140
>sp|Q6DJ06|LMO42_XENTR LIM domain transcription factor LMO4.2 OS=Xenopus tropicalis
GN=lmo4.2 PE=2 SV=1
Length = 165
Score = 154 bits (388), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 66/139 (47%), Positives = 93/139 (66%)
Query: 33 TDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVG 92
+ S +Q ++ K CA CG +I +RFLL A+D +WH CLKC CC +LGE+G
Sbjct: 2 VNPGSSSQPPPVTASTLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGEIG 61
Query: 93 STLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHR 152
++ Y K+ +ILC+ DY+RLFG +G C+AC + IPA E+VMRA+ NVYHL+CF C C +R
Sbjct: 62 TSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNR 121
Query: 153 FCVGDRFYLCDNKILCEYD 171
GDRF+ + + CE+D
Sbjct: 122 LVPGDRFHYINGSLFCEHD 140
>sp|P61969|LMO4_MOUSE LIM domain transcription factor LMO4 OS=Mus musculus GN=Lmo4 PE=1
SV=1
Length = 165
Score = 153 bits (387), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 95/140 (67%), Gaps = 6/140 (4%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
++ VT G+L+ K CA CG +I +RFLL A+D +WH CLKC CC +LG++
Sbjct: 7 SSQPPPVTAGSLS------WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 60
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
G++ Y K+ +ILC+ DY+RLFG +G C+AC + IPA E+VMRA+ NVYHL+CF C C +
Sbjct: 61 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 120
Query: 152 RFCVGDRFYLCDNKILCEYD 171
R GDRF+ + + CE+D
Sbjct: 121 RLVPGDRFHYINGSLFCEHD 140
>sp|P61968|LMO4_HUMAN LIM domain transcription factor LMO4 OS=Homo sapiens GN=LMO4 PE=1
SV=1
Length = 165
Score = 153 bits (387), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 95/140 (67%), Gaps = 6/140 (4%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
++ VT G+L+ K CA CG +I +RFLL A+D +WH CLKC CC +LG++
Sbjct: 7 SSQPPPVTAGSLS------WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 60
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
G++ Y K+ +ILC+ DY+RLFG +G C+AC + IPA E+VMRA+ NVYHL+CF C C +
Sbjct: 61 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 120
Query: 152 RFCVGDRFYLCDNKILCEYD 171
R GDRF+ + + CE+D
Sbjct: 121 RLVPGDRFHYINGSLFCEHD 140
>sp|Q3SWZ8|LMO4_BOVIN LIM domain transcription factor LMO4 OS=Bos taurus GN=LMO4 PE=2
SV=1
Length = 165
Score = 153 bits (387), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 95/140 (67%), Gaps = 6/140 (4%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
++ VT G+L+ K CA CG +I +RFLL A+D +WH CLKC CC +LG++
Sbjct: 7 SSQPPPVTAGSLS------WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI 60
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
G++ Y K+ +ILC+ DY+RLFG +G C+AC + IPA E+VMRA+ NVYHL+CF C C +
Sbjct: 61 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN 120
Query: 152 RFCVGDRFYLCDNKILCEYD 171
R GDRF+ + + CE+D
Sbjct: 121 RLVPGDRFHYINGSLFCEHD 140
>sp|Q5FVB2|LMO41_XENTR LIM domain transcription factor LMO4.1 OS=Xenopus tropicalis
GN=lmo4.1 PE=2 SV=1
Length = 167
Score = 152 bits (383), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 64/123 (52%), Positives = 89/123 (72%)
Query: 49 GGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDY 108
G K CA CG +I +RFLL +++ +WH CLKC CC +LGE+G++ Y K+ +ILC+ DY
Sbjct: 19 GPPKACAGCGGKIADRFLLYSMERYWHTRCLKCSCCQAQLGEIGTSCYTKSGMILCRNDY 78
Query: 109 LRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILC 168
+RLFG++G C+AC + IPA EMVMRA+ +VYHL+CF C C +R GDRF+ + I C
Sbjct: 79 IRLFGSSGACSACGQSIPASEMVMRAQGSVYHLKCFTCATCRNRLVPGDRFHYVNGAIFC 138
Query: 169 EYD 171
E+D
Sbjct: 139 EHD 141
>sp|Q8AW92|LMO4A_XENLA LIM domain transcription factor LMO4-A OS=Xenopus laevis GN=lmo4-a
PE=2 SV=1
Length = 171
Score = 150 bits (379), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 67/138 (48%), Positives = 92/138 (66%), Gaps = 2/138 (1%)
Query: 34 DASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGS 93
+ S T + G+ K CA CG +I +RFLL ++D +WH CLKC CC +LGE+G+
Sbjct: 6 SSESTTTAVSSNGSP--PKACAGCGGKIGDRFLLYSMDRYWHTRCLKCSCCQAQLGEIGT 63
Query: 94 TLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRF 153
+ Y K+ +ILC+ DY+RLFG +G C AC + IPA EMVMRA+ +VYHL+CF C C +R
Sbjct: 64 SCYTKSGMILCRNDYIRLFGNSGACNACGQSIPASEMVMRAQGSVYHLKCFTCATCRNRL 123
Query: 154 CVGDRFYLCDNKILCEYD 171
GDRF+ + I CE+D
Sbjct: 124 VPGDRFHYVNGTIFCEHD 141
>sp|Q801P0|LMO4B_XENLA LIM domain transcription factor LMO4-B OS=Xenopus laevis GN=lmo4-b
PE=2 SV=1
Length = 171
Score = 150 bits (379), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 64/120 (53%), Positives = 86/120 (71%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
K CA CG +I +RFLL ++D +WH CLKC CC +LGE+G++ Y K+ +ILC+ DY+RL
Sbjct: 22 KACAGCGGKIADRFLLYSMDRYWHTRCLKCSCCQAQLGEIGTSCYTKSGMILCRNDYIRL 81
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
FG +G C AC + IPA EMVMRA+ +VYHL+CF C C +R GDRF+ + I CE+D
Sbjct: 82 FGNSGACNACGQSIPASEMVMRAQGSVYHLKCFTCATCRNRLVPGDRFHYVNGTIFCEHD 141
>sp|Q5M8V8|RBTN2_XENTR Rhombotin-2 OS=Xenopus tropicalis GN=lmo2 PE=2 SV=1
Length = 158
Score = 148 bits (373), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 71/125 (56%), Positives = 83/125 (66%)
Query: 50 GLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYL 109
L C C + I +R+ LKA+D +WHEDCL C C CRLGEVG LY K LC+RDYL
Sbjct: 26 SLLTCGGCQQSIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYL 85
Query: 110 RLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCE 169
RLFG G CA+C K I AFEM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE
Sbjct: 86 RLFGQDGLCASCDKRIRAFEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCE 145
Query: 170 YDYEE 174
D E
Sbjct: 146 QDIYE 150
>sp|P25791|RBTN2_HUMAN Rhombotin-2 OS=Homo sapiens GN=LMO2 PE=1 SV=1
Length = 158
Score = 147 bits (370), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 83/124 (66%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L C C + I +R+ LKA+D +WHEDCL C C CRLGEVG LY K LC+RDYLR
Sbjct: 27 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 86
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
LFG G CA+C K I A+EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE
Sbjct: 87 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQ 146
Query: 171 DYEE 174
D E
Sbjct: 147 DIYE 150
>sp|P25801|RBTN2_MOUSE Rhombotin-2 OS=Mus musculus GN=Lmo2 PE=1 SV=1
Length = 158
Score = 147 bits (370), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 83/124 (66%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L C C + I +R+ LKA+D +WHEDCL C C CRLGEVG LY K LC+RDYLR
Sbjct: 27 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 86
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
LFG G CA+C K I A+EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE
Sbjct: 87 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQ 146
Query: 171 DYEE 174
D E
Sbjct: 147 DIYE 150
>sp|Q1LZ94|RBTN2_BOVIN Rhombotin-2 OS=Bos taurus GN=LMO2 PE=2 SV=1
Length = 158
Score = 147 bits (370), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 83/124 (66%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L C C + I +R+ LKA+D +WHEDCL C C CRLGEVG LY K LC+RDYLR
Sbjct: 27 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 86
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
LFG G CA+C K I A+EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE
Sbjct: 87 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQ 146
Query: 171 DYEE 174
D E
Sbjct: 147 DIYE 150
>sp|Q9PTJ3|RBTN2_DANRE Rhombotin-2 OS=Danio rerio GN=lmo2 PE=2 SV=1
Length = 159
Score = 146 bits (369), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 83/124 (66%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L C C + I +RF LKA++ +WHEDCL C C CRLGEVG LY K LC+RDYLR
Sbjct: 27 LLTCGGCQQSIGDRFFLKAIEQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 86
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
LFG G CA+C K I AFEM MR ++ VYHLECF C C FCVGDR+ L ++ I+CE
Sbjct: 87 LFGQDGLCASCEKRIRAFEMTMRVRDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQ 146
Query: 171 DYEE 174
D E
Sbjct: 147 DIFE 150
>sp|Q90XH3|RBTN2_XENLA Rhombotin-2 OS=Xenopus laevis GN=lmo2 PE=2 SV=1
Length = 158
Score = 145 bits (365), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/125 (55%), Positives = 82/125 (65%)
Query: 50 GLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYL 109
L C C + I +R+ LKA+D +WHEDCL C C CRLGEVG LY K LC+RDYL
Sbjct: 26 SLLTCGGCQQSIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYL 85
Query: 110 RLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCE 169
RLFG G CA+C I A+EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE
Sbjct: 86 RLFGQDGLCASCDNRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCE 145
Query: 170 YDYEE 174
D E
Sbjct: 146 QDIYE 150
>sp|Q25132|LHX3_HALRO LIM/homeobox protein Lhx3 OS=Halocynthia roretzi GN=LHX3 PE=2 SV=2
Length = 692
Score = 115 bits (289), Expect = 2e-25, Method: Composition-based stats.
Identities = 53/125 (42%), Positives = 75/125 (60%), Gaps = 6/125 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +C C RI +RF+LK D WH LKC C +L E + + NL+ CK D+ +
Sbjct: 279 IPKCTGCEHRIFDRFILKVQDKPWHSQGLKCNDCSAQLSE---KCFSRGNLVFCKDDFFK 335
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
FGT C AC IP E++ RA++NVYHLE F C C+ + GD+FYL DN+++C+
Sbjct: 336 RFGTK--CTACGHGIPPTEVIRRAQDNVYHLEGFCCFLCHEKMGTGDQFYLLEDNRLVCK 393
Query: 170 YDYEE 174
DYE+
Sbjct: 394 KDYEQ 398
>sp|P36200|LHX3_XENLA LIM/homeobox protein Lhx3 OS=Xenopus laevis GN=lhx3 PE=1 SV=1
Length = 395
Score = 111 bits (277), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 76/128 (59%), Gaps = 6/128 (4%)
Query: 47 ASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKR 106
S + +CA C + I +RF+LK LD WH CLKC C +L E + + + + CK
Sbjct: 21 GSPEIPQCAGCNQHIVDRFILKVLDRHWHSKCLKCNDCQIQLAE---KCFSRGDSVYCKD 77
Query: 107 DYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNK 165
D+ + FGT CAAC + IP ++V RA+ VYHL CFAC C + GD FYL D++
Sbjct: 78 DFFKRFGTK--CAACQQGIPPTQVVRRAQEFVYHLHCFACIVCKRQLATGDEFYLMEDSR 135
Query: 166 ILCEYDYE 173
++C+ DYE
Sbjct: 136 LVCKADYE 143
>sp|P53412|LHX3_CHICK LIM/homeobox protein Lhx3 OS=Gallus gallus GN=LHX3 PE=2 SV=1
Length = 395
Score = 110 bits (276), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 74/121 (61%), Gaps = 6/121 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RF+LK LD WH CLKC C +L E + + + + CK D+ + FG
Sbjct: 28 CAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQTQLAE---KCFSRGDGVYCKEDFFKRFG 84
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDY 172
T CAAC + IP ++V RA++ VYHL CFAC C + GD FYL D++++C+ DY
Sbjct: 85 TK--CAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEFYLMEDSRLVCKADY 142
Query: 173 E 173
E
Sbjct: 143 E 143
>sp|Q9UBR4|LHX3_HUMAN LIM/homeobox protein Lhx3 OS=Homo sapiens GN=LHX3 PE=1 SV=2
Length = 397
Score = 108 bits (271), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 91/177 (51%), Gaps = 31/177 (17%)
Query: 49 GGLKE---CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCK 105
GG +E CA C + I +RF+LKALD WH CLKC C L E + + + CK
Sbjct: 23 GGTREIPLCAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCK 79
Query: 106 RDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DN 164
D+ + FGT CAAC IP ++V RA++ VYHL CFAC C + GD FYL D+
Sbjct: 80 DDFFKRFGTK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDS 137
Query: 165 KILCEYDYE---ERQVFANI-----------------AYN--PSSLAHLRRQVTLQV 199
+++C+ DYE +R+ A AYN P H+R Q++ +
Sbjct: 138 RLVCKADYETAKQREAEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSET 194
>sp|Q90421|LHX3_DANRE LIM/homeobox protein Lhx3 OS=Danio rerio GN=lhx3 PE=2 SV=1
Length = 398
Score = 108 bits (270), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 77/128 (60%), Gaps = 6/128 (4%)
Query: 47 ASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKR 106
+S + CA C + I +RF+LK LD WH CLKC C +L + + + + + CK
Sbjct: 21 SSQDIPVCAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQSQLAD---KCFSRGDSVYCKD 77
Query: 107 DYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNK 165
D+ + FGT CAAC + IP ++V RA++ VYHL CFAC C + GD +YL D++
Sbjct: 78 DFFKRFGTK--CAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEYYLMEDSR 135
Query: 166 ILCEYDYE 173
++C+ DYE
Sbjct: 136 LVCKADYE 143
>sp|P53776|LHX4_MOUSE LIM/homeobox protein Lhx4 OS=Mus musculus GN=Lhx4 PE=1 SV=4
Length = 390
Score = 108 bits (269), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 75/124 (60%), Gaps = 6/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +CA C + I ++F+LK LD WH CLKC C +L + + +A + CK D+ +
Sbjct: 27 IPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFK 83
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
FGT C AC + IP ++V +A++ VYHL CFAC CN + GD FYL D +++C+
Sbjct: 84 RFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCK 141
Query: 170 YDYE 173
DYE
Sbjct: 142 EDYE 145
>sp|Q969G2|LHX4_HUMAN LIM/homeobox protein Lhx4 OS=Homo sapiens GN=LHX4 PE=1 SV=2
Length = 390
Score = 108 bits (269), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 75/124 (60%), Gaps = 6/124 (4%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
+ +CA C + I ++F+LK LD WH CLKC C +L + + +A + CK D+ +
Sbjct: 27 IPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFK 83
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 169
FGT C AC + IP ++V +A++ VYHL CFAC CN + GD FYL D +++C+
Sbjct: 84 RFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCK 141
Query: 170 YDYE 173
DYE
Sbjct: 142 EDYE 145
>sp|P50481|LHX3_MOUSE LIM/homeobox protein Lhx3 OS=Mus musculus GN=Lhx3 PE=1 SV=1
Length = 400
Score = 107 bits (266), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 72/121 (59%), Gaps = 6/121 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RF+LKALD WH CLKC C L E + + + CK D+ + FG
Sbjct: 34 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAE---RCFSRGESVYCKDDFFKRFG 90
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDY 172
T CAAC IP ++V RA++ VYHL CFAC C + GD FYL D++++C+ DY
Sbjct: 91 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 148
Query: 173 E 173
E
Sbjct: 149 E 149
>sp|O97581|LHX3_PIG LIM/homeobox protein Lhx3 (Fragment) OS=Sus scrofa GN=LHX3 PE=2
SV=1
Length = 383
Score = 107 bits (266), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 87/169 (51%), Gaps = 28/169 (16%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +RF+LKALD WH CLKC C L E + + + CK D+ + FG
Sbjct: 16 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESLYCKDDFFKRFG 72
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDY 172
T CAAC IP ++V RA++ VYHL CFAC C + GD FYL D++++C+ DY
Sbjct: 73 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 130
Query: 173 E---ERQVFANI-----------------AYN--PSSLAHLRRQVTLQV 199
E +R+ A AYN P H+R Q++ +
Sbjct: 131 ETAKQREAEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSET 179
>sp|Q1LWV4|LHX9_DANRE LIM/homeobox protein Lhx9 OS=Danio rerio GN=lhx9 PE=2 SV=1
Length = 396
Score = 101 bits (252), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 70/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 71 CAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF 128
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA+++VYHL CF C CN GD F + DN + C +
Sbjct: 129 -SVQRCARCHLGISASEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRVHF 187
Query: 173 E 173
E
Sbjct: 188 E 188
>sp|Q90881|LHX9_CHICK LIM/homeobox protein Lhx9 OS=Gallus gallus GN=LHX9 PE=2 SV=2
Length = 397
Score = 100 bits (248), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 71 CAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF 128
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA+ +VYHL CF C CN GD F + DN + C +
Sbjct: 129 -SVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRAHF 187
Query: 173 E 173
E
Sbjct: 188 E 188
>sp|A2I8Z7|LHX9_ASTFA LIM/homeobox protein Lhx9 OS=Astyanax fasciatus GN=lhx9 PE=2 SV=1
Length = 377
Score = 99.8 bits (247), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 70/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 52 CAGCGSKISDRYYLLAVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF 109
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA+++VYHL CF C CN GD F + +N + C +
Sbjct: 110 -SVQRCARCHLGISASEMVMRARDSVYHLSCFTCTSCNKTLTTGDHFGMRENLVYCRAHF 168
Query: 173 E 173
E
Sbjct: 169 E 169
>sp|Q9WUH2|LHX9_MOUSE LIM/homeobox protein Lhx9 OS=Mus musculus GN=Lhx9 PE=1 SV=3
Length = 397
Score = 99.8 bits (247), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 77/145 (53%), Gaps = 12/145 (8%)
Query: 38 VTQGALAGGASGGLKE--------CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG 89
+T+G G G+ CA CG +I++R+ L A+D WH CLKC C+C+L
Sbjct: 47 LTKGTQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLA 104
Query: 90 -EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 148
E T + K I CK DY R F + CA C I A EMVMRA+++VYHL CF C
Sbjct: 105 LESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCST 163
Query: 149 CNHRFCVGDRFYLCDNKILCEYDYE 173
CN GD F + D+ + C +E
Sbjct: 164 CNKTLTTGDHFGMKDSLVYCRAHFE 188
>sp|Q8TE12|LMX1A_HUMAN LIM homeobox transcription factor 1-alpha OS=Homo sapiens GN=LMX1A
PE=2 SV=1
Length = 382
Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 88/166 (53%), Gaps = 9/166 (5%)
Query: 18 FDSLRLATHYQVDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHED 77
D L++ ++Q + T AS +L G A C C + I +RFLL+ D FWHE
Sbjct: 2 LDGLKMEENFQSAIDTSASF---SSLLGRAVSPKSVCEGCQRVILDRFLLRLNDSFWHEQ 58
Query: 78 CLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNN 137
C++C C L +T + + + CK DY +LF C C + I E VMRA+ +
Sbjct: 59 CVQCASCKEPLE---TTCFYRDKKLYCKYDYEKLFAVK--CGGCFEAIAPNEFVMRAQKS 113
Query: 138 VYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFANIA 182
VYHL CF C C + GD F L + ++LC+ DYE ER++ + ++
Sbjct: 114 VYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSLVS 159
>sp|Q9NQ69|LHX9_HUMAN LIM/homeobox protein Lhx9 OS=Homo sapiens GN=LHX9 PE=1 SV=3
Length = 397
Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 77/145 (53%), Gaps = 12/145 (8%)
Query: 38 VTQGALAGGASGGLKE--------CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG 89
+ +GA G G+ CA CG +I++R+ L A+D WH CLKC C+C+L
Sbjct: 47 LAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLA 104
Query: 90 -EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 148
E T + K I CK DY R F + CA C I A EMVMRA+++VYHL CF C
Sbjct: 105 LESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCST 163
Query: 149 CNHRFCVGDRFYLCDNKILCEYDYE 173
CN GD F + D+ + C +E
Sbjct: 164 CNKTLTTGDHFGMKDSLVYCRAHFE 188
>sp|P53409|ISL3_ONCTS Insulin gene enhancer protein ISL-3 OS=Oncorhynchus tschawytscha
GN=isl3 PE=2 SV=1
Length = 363
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 90/175 (51%), Gaps = 11/175 (6%)
Query: 29 VDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCR 87
VD+ ++S + G C CG +I ++++L+ + DL WH CLKC C
Sbjct: 2 VDIIFNSSFLGDMGDHSKKKSGFAMCVGCGSQIHDQYILRVSPDLEWHAACLKCAECSQY 61
Query: 88 LGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQ 147
L E T + + CKRDY+RLFG CA C + ++VMRA++NVYH+ECF C
Sbjct: 62 LDET-CTCFVRDGKTYCKRDYVRLFGIK--CAKCNLGFSSSDLVMRARDNVYHIECFRCS 118
Query: 148 QCNHRFCVGDRFYLCDNKILCEYDYE---ERQVFANIAYNPSSLAHLRRQVTLQV 199
C+ + GD F L D ++LC D+ ER A +P S H+ +L +
Sbjct: 119 VCSRQLLPGDEFSLRDEELLCRADHSLLMER----TSAGSPISPGHIHSNRSLHL 169
>sp|Q9UPM6|LHX6_HUMAN LIM/homeobox protein Lhx6 OS=Homo sapiens GN=LHX6 PE=2 SV=2
Length = 363
Score = 99.0 bits (245), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 48 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 107
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 108 NS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 164
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 165 QLSTGEEFGLVEEKVLCRIHYD 186
>sp|Q80W90|LHX9_RAT LIM/homeobox protein Lhx9 OS=Rattus norvegicus GN=Lhx9 PE=2 SV=1
Length = 388
Score = 99.0 bits (245), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 70/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 62 CAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF 119
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA+++VYHL CF C CN GD F + D+ + C +
Sbjct: 120 -SVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHF 178
Query: 173 E 173
E
Sbjct: 179 E 179
>sp|A0JNI8|LHX9_BOVIN LIM/homeobox protein Lhx9 OS=Bos taurus GN=LHX9 PE=2 SV=2
Length = 397
Score = 99.0 bits (245), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 76/145 (52%), Gaps = 12/145 (8%)
Query: 38 VTQGALAGGASGGLKE--------CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG 89
+ +GA G G+ CA CG +I +R+ L A+D WH CLKC C+C+L
Sbjct: 47 LAKGAQLNGRDAGMPPLSPEKPALCAGCGGKIADRYYLLAVDKQWHLRCLKC--CECKLA 104
Query: 90 -EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 148
E T + K I CK DY R F + CA C I A EMVMRA+++VYHL CF C
Sbjct: 105 LESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCST 163
Query: 149 CNHRFCVGDRFYLCDNKILCEYDYE 173
CN GD F + D+ + C +E
Sbjct: 164 CNKTLTTGDHFGMKDSLVYCRAHFE 188
>sp|Q9R1R0|LHX6_MOUSE LIM/homeobox protein Lhx6 OS=Mus musculus GN=Lhx6 PE=1 SV=2
Length = 363
Score = 98.2 bits (243), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+T + A + S G C+SCG I +R+LLK +L WH CL+C C L +
Sbjct: 48 STPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQ 107
Query: 92 GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNH 151
S Y K I CK DY FGT CA C + I A + V RA+ N YHL CFAC C
Sbjct: 108 NS-CYIKNKEIYCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKR 164
Query: 152 RFCVGDRFYLCDNKILCEYDYE 173
+ G+ F L + K+LC Y+
Sbjct: 165 QLSTGEEFGLVEEKVLCRIHYD 186
>sp|P53408|ISL2A_ONCTS Insulin gene enhancer protein ISL-2A OS=Oncorhynchus tschawytscha
GN=isl2a PE=2 SV=1
Length = 358
Score = 98.2 bits (243), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 79/145 (54%), Gaps = 4/145 (2%)
Query: 29 VDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLK-ALDLFWHEDCLKCGCCDCR 87
VD+ ++S + G+ C CG +I ++++L+ A DL WH CLKC C
Sbjct: 2 VDIIFNSSFLGDMGDHSKKKSGIAMCVGCGSQIHDQYILRVAPDLEWHAACLKCAECSQY 61
Query: 88 LGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQ 147
L E T + + CKRDY+RLFG CA C + ++VMRA++NVYH+ECF C
Sbjct: 62 LDET-CTCFVRDGKTYCKRDYVRLFGIK--CANCNIGFCSSDLVMRARDNVYHMECFRCS 118
Query: 148 QCNHRFCVGDRFYLCDNKILCEYDY 172
C+ GD F L D ++LC D+
Sbjct: 119 VCSRHLLPGDEFSLRDEELLCRADH 143
>sp|Q04650|LMX1A_MESAU LIM homeobox transcription factor 1-alpha OS=Mesocricetus auratus
GN=LMX1A PE=2 SV=1
Length = 382
Score = 97.8 bits (242), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 88/166 (53%), Gaps = 9/166 (5%)
Query: 18 FDSLRLATHYQVDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHED 77
D L++ ++Q + T AS +L G A C C + I++RFLL+ D FWHE
Sbjct: 2 LDGLKMEENFQSAIETSASF---SSLLGRAVSPKSVCEGCQRVISDRFLLRLNDSFWHEQ 58
Query: 78 CLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNN 137
C++C C L +T + + + CK Y +LF C C + I E VMRA+ +
Sbjct: 59 CVQCASCKEPLE---TTCFYRDKKLYCKYHYEKLFAVK--CGGCFEAIAPNEFVMRAQKS 113
Query: 138 VYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFANIA 182
VYHL CF C C + GD F L + ++LC+ DYE ER++ + ++
Sbjct: 114 VYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSLVS 159
>sp|Q9JKU8|LMX1A_MOUSE LIM homeobox transcription factor 1-alpha OS=Mus musculus GN=Lmx1a
PE=2 SV=1
Length = 382
Score = 97.8 bits (242), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 88/166 (53%), Gaps = 9/166 (5%)
Query: 18 FDSLRLATHYQVDLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHED 77
D L++ ++Q + T AS +L G A C C + I++RFLL+ D FWHE
Sbjct: 2 LDGLKMEENFQSAIETSASF---SSLLGRAVSPKSVCEGCQRVISDRFLLRLNDSFWHEQ 58
Query: 78 CLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNN 137
C++C C L +T + + + CK Y +LF C C + I E VMRA+ +
Sbjct: 59 CVQCASCKEPLE---TTCFYRDKKLYCKYHYEKLFAVK--CGGCFEAIAPNEFVMRAQKS 113
Query: 138 VYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFANIA 182
VYHL CF C C + GD F L + ++LC+ DYE ER++ + ++
Sbjct: 114 VYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSLVS 159
>sp|Q9Z0S2|LHX2_MOUSE LIM/homeobox protein Lhx2 OS=Mus musculus GN=Lhx2 PE=1 SV=1
Length = 406
Score = 97.8 bits (242), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 110
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA++ VYHL CF C CN GD F + D+ + C +
Sbjct: 111 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHF 169
Query: 173 E 173
E
Sbjct: 170 E 170
>sp|P50458|LHX2_HUMAN LIM/homeobox protein Lhx2 OS=Homo sapiens GN=LHX2 PE=2 SV=2
Length = 406
Score = 97.4 bits (241), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLF 112
CA CG +I++R+ L A+D WH CLKC C+C+L E T + K I CK DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 110
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
+ CA C I A EMVMRA++ VYHL CF C CN GD F + D+ + C +
Sbjct: 111 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHF 169
Query: 173 E 173
E
Sbjct: 170 E 170
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.329 0.140 0.470
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,860,326
Number of Sequences: 539616
Number of extensions: 2899435
Number of successful extensions: 10952
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 150
Number of HSP's that attempted gapping in prelim test: 9936
Number of HSP's gapped (non-prelim): 704
length of query: 204
length of database: 191,569,459
effective HSP length: 112
effective length of query: 92
effective length of database: 131,132,467
effective search space: 12064186964
effective search space used: 12064186964
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 58 (26.9 bits)