Query psy7480
Match_columns 204
No_of_seqs 215 out of 1654
Neff 8.8
Searched_HMMs 29240
Date Fri Aug 16 19:25:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7480.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7480hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xjy_A Rhombotin-2; oncoprotei 100.0 4.5E-32 1.5E-36 198.2 9.8 127 51-177 2-128 (131)
2 2xqn_T Testin, TESS; metal-bin 100.0 2.7E-31 9.2E-36 192.8 9.2 122 50-176 2-125 (126)
3 1rut_X Flinc4, fusion protein 100.0 8.2E-31 2.8E-35 202.7 6.1 130 50-179 4-133 (188)
4 2rgt_A Fusion of LIM/homeobox 100.0 2.3E-30 7.8E-35 197.0 8.1 125 49-178 4-129 (169)
5 2jtn_A LIM domain-binding prot 100.0 4.1E-29 1.4E-33 192.2 12.4 124 47-175 56-180 (182)
6 1b8t_A Protein (CRP1); LIM dom 100.0 1.8E-28 6E-33 190.2 9.7 133 48-184 4-182 (192)
7 2cup_A Skeletal muscle LIM-pro 99.9 4.8E-26 1.6E-30 158.8 7.7 98 49-150 3-101 (101)
8 1m3v_A FLIN4, fusion of the LI 99.9 1.1E-23 3.7E-28 151.8 1.0 112 49-176 3-114 (122)
9 2ehe_A Four and A half LIM dom 99.8 8.7E-21 3E-25 127.2 3.8 78 99-179 1-78 (82)
10 1j2o_A FLIN2, fusion of rhombo 99.8 2.2E-21 7.4E-26 138.1 0.6 104 50-175 2-105 (114)
11 1x63_A Skeletal muscle LIM-pro 99.8 4.7E-20 1.6E-24 123.5 6.8 77 99-178 1-77 (82)
12 2cuq_A Four and A half LIM dom 99.8 4.2E-20 1.4E-24 123.2 6.1 76 99-179 1-76 (80)
13 2egq_A FHL1 protein; LIM domai 99.8 3.5E-20 1.2E-24 122.7 5.3 73 99-174 1-76 (77)
14 1x3h_A Leupaxin; paxillin fami 99.8 8.4E-20 2.9E-24 121.7 5.5 76 99-179 1-76 (80)
15 1x6a_A LIMK-2, LIM domain kina 99.8 2.2E-19 7.4E-24 120.0 5.8 75 100-178 2-77 (81)
16 2dlo_A Thyroid receptor-intera 99.8 4E-19 1.4E-23 118.7 5.5 75 99-179 2-77 (81)
17 1v6g_A Actin binding LIM prote 99.7 1E-17 3.5E-22 111.8 4.7 72 100-175 2-73 (81)
18 1iml_A CRIP, cysteine rich int 99.7 8.2E-17 2.8E-21 106.1 5.2 71 52-126 1-72 (76)
19 2dj7_A Actin-binding LIM prote 99.7 1.4E-16 4.9E-21 106.0 6.0 69 47-120 11-79 (80)
20 1x4k_A Skeletal muscle LIM-pro 99.6 2.3E-16 7.9E-21 102.7 6.1 66 111-179 3-68 (72)
21 1wyh_A SLIM 2, skeletal muscle 99.6 3.4E-16 1.1E-20 102.0 6.2 66 111-179 3-68 (72)
22 1a7i_A QCRP2 (LIM1); LIM domai 99.6 8.8E-17 3E-21 107.2 3.2 73 49-125 5-77 (81)
23 1wig_A KIAA1808 protein; LIM d 99.6 1.8E-16 6.1E-21 103.7 4.4 63 111-177 3-65 (73)
24 1x68_A FHL5 protein; four-and- 99.6 4.2E-16 1.4E-20 102.7 6.1 70 49-122 3-75 (76)
25 1nyp_A Pinch protein; LIM doma 99.6 2.6E-16 8.8E-21 100.8 4.6 62 111-177 3-64 (66)
26 1x61_A Thyroid receptor intera 99.6 4.8E-16 1.6E-20 101.3 5.7 63 112-177 4-66 (72)
27 1x68_A FHL5 protein; four-and- 99.6 1.4E-16 4.9E-21 104.9 3.2 68 110-180 2-71 (76)
28 3f6q_B LIM and senescent cell 99.6 4.2E-16 1.4E-20 101.3 5.3 65 109-176 7-71 (72)
29 2dar_A PDZ and LIM domain prot 99.6 5.3E-16 1.8E-20 105.5 5.7 70 46-120 20-89 (90)
30 2dar_A PDZ and LIM domain prot 99.6 5.6E-16 1.9E-20 105.4 5.8 74 101-179 13-86 (90)
31 1x64_A Alpha-actinin-2 associa 99.6 7.3E-16 2.5E-20 104.6 6.3 68 47-119 21-88 (89)
32 2l4z_A DNA endonuclease RBBP8, 99.6 7E-16 2.4E-20 110.9 6.0 67 47-113 57-123 (123)
33 1x4l_A Skeletal muscle LIM-pro 99.6 4.5E-16 1.5E-20 101.4 4.2 59 117-176 7-67 (72)
34 2cu8_A Cysteine-rich protein 2 99.6 8.2E-16 2.8E-20 101.2 5.2 68 49-120 7-75 (76)
35 2d8z_A Four and A half LIM dom 99.6 1.1E-15 3.8E-20 99.0 5.3 63 111-178 3-65 (70)
36 2cur_A Skeletal muscle LIM-pro 99.6 1.1E-15 3.9E-20 98.7 5.2 60 117-179 7-66 (69)
37 2cur_A Skeletal muscle LIM-pro 99.6 7.4E-16 2.5E-20 99.5 4.1 67 49-120 3-69 (69)
38 2l3k_A Rhombotin-2, linker, LI 99.6 1.5E-15 5E-20 109.2 5.7 73 108-180 1-73 (123)
39 2iyb_E Testin, TESS, TES; LIM 99.6 1.2E-15 4.1E-20 97.5 4.4 58 117-175 4-64 (65)
40 1g47_A Pinch protein; LIM doma 99.6 1E-15 3.5E-20 101.0 4.0 60 117-177 13-72 (77)
41 1wyh_A SLIM 2, skeletal muscle 99.6 1.4E-15 4.8E-20 99.0 4.6 68 49-120 3-71 (72)
42 2d8x_A Protein pinch; LIM doma 99.6 2E-15 6.9E-20 97.7 5.3 59 117-178 7-65 (70)
43 2d8z_A Four and A half LIM dom 99.6 1.2E-15 4.1E-20 98.8 4.0 67 49-120 3-69 (70)
44 1x62_A C-terminal LIM domain p 99.6 6.3E-16 2.2E-20 102.6 2.7 67 48-119 12-78 (79)
45 1x4k_A Skeletal muscle LIM-pro 99.6 1.9E-15 6.6E-20 98.3 4.8 67 50-120 4-71 (72)
46 1x4l_A Skeletal muscle LIM-pro 99.6 2.1E-15 7.2E-20 98.2 4.4 64 49-114 3-69 (72)
47 2d8y_A Eplin protein; LIM doma 99.6 1.8E-15 6.3E-20 103.0 4.3 69 49-121 13-81 (91)
48 2co8_A NEDD9 interacting prote 99.6 4.1E-15 1.4E-19 99.3 5.5 66 47-114 11-78 (82)
49 2ehe_A Four and A half LIM dom 99.5 4.2E-15 1.4E-19 99.2 5.3 69 48-120 12-81 (82)
50 1g47_A Pinch protein; LIM doma 99.5 2.3E-15 7.9E-20 99.2 3.6 67 49-119 9-76 (77)
51 1nyp_A Pinch protein; LIM doma 99.5 2.6E-15 8.9E-20 96.1 3.7 63 49-114 3-65 (66)
52 1x61_A Thyroid receptor intera 99.5 3.7E-15 1.3E-19 97.0 3.9 68 49-121 3-71 (72)
53 1x62_A C-terminal LIM domain p 99.5 2.6E-15 8.8E-20 99.6 2.7 59 117-178 17-75 (79)
54 1x64_A Alpha-actinin-2 associa 99.5 7.4E-15 2.5E-19 99.6 5.1 58 117-177 27-84 (89)
55 2cor_A Pinch protein; LIM doma 99.5 7.2E-15 2.5E-19 97.5 4.7 57 117-177 17-73 (79)
56 2d8x_A Protein pinch; LIM doma 99.5 8E-15 2.7E-19 94.9 4.5 63 49-114 3-65 (70)
57 2dj7_A Actin-binding LIM prote 99.5 7.3E-15 2.5E-19 97.7 4.3 61 116-179 16-76 (80)
58 2cu8_A Cysteine-rich protein 2 99.5 9.5E-15 3.3E-19 96.1 4.8 65 111-179 7-72 (76)
59 1x3h_A Leupaxin; paxillin fami 99.5 7.8E-15 2.7E-19 97.4 3.6 67 49-120 13-79 (80)
60 2cor_A Pinch protein; LIM doma 99.5 1.5E-14 5.2E-19 95.9 4.9 64 47-114 11-74 (79)
61 1iml_A CRIP, cysteine rich int 99.5 1.3E-14 4.6E-19 95.4 4.6 67 116-184 1-68 (76)
62 2cup_A Skeletal muscle LIM-pro 99.5 1.1E-14 3.7E-19 100.9 4.3 68 117-185 7-74 (101)
63 2cuq_A Four and A half LIM dom 99.5 1.1E-14 3.8E-19 96.6 3.9 67 49-120 13-79 (80)
64 2dlo_A Thyroid receptor-intera 99.5 1E-14 3.6E-19 97.1 3.7 67 49-120 13-80 (81)
65 1a7i_A QCRP2 (LIM1); LIM domai 99.5 1.4E-14 4.7E-19 96.5 4.1 65 117-183 9-73 (81)
66 2l4z_A DNA endonuclease RBBP8, 99.5 1.7E-14 5.7E-19 103.6 4.3 59 117-176 63-122 (123)
67 1b8t_A Protein (CRP1); LIM dom 99.5 2.2E-14 7.6E-19 110.7 5.0 73 49-125 113-185 (192)
68 1wig_A KIAA1808 protein; LIM d 99.5 2.9E-14 9.8E-19 93.1 4.6 64 49-114 3-66 (73)
69 1x63_A Skeletal muscle LIM-pro 99.5 3.5E-14 1.2E-18 94.6 4.5 68 48-119 12-80 (82)
70 2xqn_T Testin, TESS; metal-bin 99.5 7.7E-14 2.6E-18 100.5 6.4 66 117-184 5-70 (126)
71 1j2o_A FLIN2, fusion of rhombo 99.5 4.2E-14 1.4E-18 100.2 4.7 67 116-183 4-71 (114)
72 2d8y_A Eplin protein; LIM doma 99.4 5.4E-14 1.8E-18 95.7 4.1 62 117-180 17-78 (91)
73 3f6q_B LIM and senescent cell 99.4 5.1E-14 1.7E-18 91.3 3.5 63 49-113 9-72 (72)
74 2l3k_A Rhombotin-2, linker, LI 99.4 1.4E-13 4.9E-18 98.7 5.7 74 52-128 9-83 (123)
75 1m3v_A FLIN4, fusion of the LI 99.4 7.5E-14 2.6E-18 100.1 3.9 67 117-184 7-76 (122)
76 1x6a_A LIMK-2, LIM domain kina 99.4 9.6E-14 3.3E-18 92.3 3.4 68 48-119 12-80 (81)
77 2iyb_E Testin, TESS, TES; LIM 99.4 1.3E-13 4.3E-18 87.9 3.4 59 51-111 2-64 (65)
78 2xjy_A Rhombotin-2; oncoprotei 99.4 4.9E-13 1.7E-17 96.8 6.6 62 116-178 3-65 (131)
79 2co8_A NEDD9 interacting prote 99.4 4.1E-14 1.4E-18 94.4 0.6 59 116-176 16-76 (82)
80 2egq_A FHL1 protein; LIM domai 99.4 1.9E-13 6.5E-18 90.0 3.3 60 49-110 13-76 (77)
81 2jtn_A LIM domain-binding prot 99.4 1.4E-12 4.7E-17 99.8 7.3 80 100-184 44-126 (182)
82 1rut_X Flinc4, fusion protein 99.3 1.5E-12 5.3E-17 100.0 5.9 61 117-178 7-68 (188)
83 2rgt_A Fusion of LIM/homeobox 99.3 4.9E-12 1.7E-16 95.5 5.4 65 117-184 8-72 (169)
84 1v6g_A Actin binding LIM prote 99.2 1.1E-11 3.6E-16 82.3 4.7 64 49-114 13-76 (81)
85 1zfo_A LAsp-1; LIM domain, zin 97.9 2.5E-06 8.6E-11 45.6 1.2 29 51-79 3-31 (31)
86 1zfo_A LAsp-1; LIM domain, zin 97.6 1.4E-05 4.9E-10 42.6 1.1 27 117-144 5-31 (31)
87 4ap4_A E3 ubiquitin ligase RNF 90.1 0.21 7.1E-06 34.7 3.0 94 79-176 8-110 (133)
88 1t1h_A Gspef-atpub14, armadill 86.6 0.5 1.7E-05 29.6 2.8 47 78-127 8-55 (78)
89 2d8t_A Dactylidin, ring finger 85.3 0.63 2.2E-05 28.7 2.8 31 96-126 30-60 (71)
90 2ect_A Ring finger protein 126 83.9 0.94 3.2E-05 28.3 3.2 28 100-127 37-64 (78)
91 4ayc_A E3 ubiquitin-protein li 83.2 0.61 2.1E-05 33.0 2.3 45 79-126 54-98 (138)
92 1iym_A EL5; ring-H2 finger, ub 82.0 1.2 4E-05 25.6 2.9 27 99-125 27-53 (55)
93 2csy_A Zinc finger protein 183 81.5 0.48 1.6E-05 30.0 1.1 45 79-126 16-60 (81)
94 2ysl_A Tripartite motif-contai 81.0 1 3.5E-05 27.7 2.5 46 79-127 21-69 (73)
95 2ecy_A TNF receptor-associated 80.9 0.45 1.5E-05 28.8 0.7 46 79-127 16-62 (66)
96 2djb_A Polycomb group ring fin 80.1 0.69 2.4E-05 28.5 1.4 46 79-127 16-62 (72)
97 1jm7_B BARD1, BRCA1-associated 78.3 1.3 4.5E-05 30.2 2.5 45 78-127 22-67 (117)
98 2y43_A E3 ubiquitin-protein li 78.2 0.94 3.2E-05 29.8 1.7 45 79-126 23-68 (99)
99 2ckl_A Polycomb group ring fin 77.6 1.2 4E-05 29.9 2.1 46 79-127 16-62 (108)
100 2jrp_A Putative cytoplasmic pr 77.2 4.4 0.00015 26.0 4.6 31 117-155 33-63 (81)
101 2ecw_A Tripartite motif-contai 76.9 0.97 3.3E-05 28.5 1.4 31 97-127 35-71 (85)
102 2cs3_A Protein C14ORF4, MY039 76.9 2 7E-05 27.5 2.8 51 49-106 13-63 (93)
103 2kre_A Ubiquitin conjugation f 76.7 2.3 7.8E-05 28.3 3.3 49 76-127 27-75 (100)
104 2egp_A Tripartite motif-contai 76.6 1 3.6E-05 28.0 1.5 30 98-127 29-65 (79)
105 3l11_A E3 ubiquitin-protein li 76.2 1.4 4.6E-05 29.9 2.1 45 79-126 16-61 (115)
106 2ep4_A Ring finger protein 24; 75.9 1.5 5.2E-05 27.0 2.1 29 99-127 36-64 (74)
107 4ap4_A E3 ubiquitin ligase RNF 75.8 1.6 5.6E-05 29.9 2.5 72 53-127 50-125 (133)
108 2ecv_A Tripartite motif-contai 75.5 0.9 3.1E-05 28.6 1.0 30 98-127 36-71 (85)
109 2ecm_A Ring finger and CHY zin 75.5 1.2 4.1E-05 25.6 1.5 29 98-126 26-54 (55)
110 2kiz_A E3 ubiquitin-protein li 74.7 1.3 4.4E-05 26.9 1.6 27 100-126 36-62 (69)
111 2eqg_A Tumor necrosis factor, 74.2 1 3.5E-05 25.2 0.8 19 158-176 20-39 (49)
112 2ct0_A Non-SMC element 1 homol 73.4 2.3 7.8E-05 26.8 2.5 18 47-64 11-28 (74)
113 2ecn_A Ring finger protein 141 73.4 1.1 3.7E-05 27.3 0.9 45 79-127 16-60 (70)
114 1wgm_A Ubiquitin conjugation f 72.9 2.3 7.9E-05 28.2 2.5 49 76-127 20-69 (98)
115 2yur_A Retinoblastoma-binding 72.7 1.2 4.2E-05 27.6 1.1 46 79-127 16-64 (74)
116 2gvi_A Conserved hypothetical 72.5 1.4 4.8E-05 33.5 1.5 30 144-174 173-202 (204)
117 3fl2_A E3 ubiquitin-protein li 71.9 1.6 5.6E-05 29.9 1.7 46 79-127 53-99 (124)
118 3lrq_A E3 ubiquitin-protein li 71.5 1.3 4.4E-05 29.4 1.0 46 79-127 23-70 (100)
119 1bor_A Transcription factor PM 71.2 1.8 6.3E-05 25.2 1.6 42 79-126 7-48 (56)
120 2kr4_A Ubiquitin conjugation f 70.9 1.3 4.6E-05 28.4 1.0 49 76-127 12-60 (85)
121 2jne_A Hypothetical protein YF 70.2 6.7 0.00023 26.0 4.2 31 117-155 63-93 (101)
122 3hct_A TNF receptor-associated 70.2 1.3 4.3E-05 30.3 0.7 46 79-127 19-65 (118)
123 1jjd_A Metallothionein, SMTA; 70.0 2.8 9.5E-05 24.8 2.1 29 145-174 9-38 (55)
124 2xeu_A Ring finger protein 4; 69.5 1.1 3.8E-05 26.5 0.3 49 79-127 4-56 (64)
125 2e5r_A Dystrobrevin alpha; ZZ 68.5 7.4 0.00025 23.5 3.9 39 134-175 4-45 (63)
126 3ng2_A RNF4, snurf, ring finge 67.9 0.89 3E-05 27.7 -0.4 31 97-127 33-63 (71)
127 1x4j_A Ring finger protein 38; 67.5 5.2 0.00018 24.5 3.3 29 99-127 44-72 (75)
128 2ct2_A Tripartite motif protei 67.3 1.9 6.7E-05 27.3 1.2 33 95-127 33-68 (88)
129 1jm7_A BRCA1, breast cancer ty 67.1 1.8 6.1E-05 28.9 1.0 46 79-127 22-70 (112)
130 2l0b_A E3 ubiquitin-protein li 67.0 2.8 9.7E-05 27.1 2.0 29 98-126 60-88 (91)
131 2ckl_B Ubiquitin ligase protei 67.0 2.2 7.5E-05 30.9 1.5 47 78-127 54-102 (165)
132 2ea6_A Ring finger protein 4; 66.8 0.85 2.9E-05 27.5 -0.7 30 97-126 38-67 (69)
133 4ic3_A E3 ubiquitin-protein li 66.3 4.1 0.00014 25.2 2.5 42 79-127 25-67 (74)
134 1rmd_A RAG1; V(D)J recombinati 65.8 2 6.8E-05 29.1 1.0 46 79-127 24-70 (116)
135 1z6u_A NP95-like ring finger p 64.6 2.5 8.6E-05 30.3 1.4 46 79-127 79-125 (150)
136 1chc_A Equine herpes virus-1 r 64.5 3 0.0001 25.0 1.6 46 80-127 7-52 (68)
137 3ztg_A E3 ubiquitin-protein li 63.3 1.8 6.1E-05 27.9 0.4 44 79-125 14-60 (92)
138 3vk6_A E3 ubiquitin-protein li 62.9 4.2 0.00014 27.2 2.1 64 81-153 4-71 (101)
139 3hcs_A TNF receptor-associated 62.0 2.2 7.6E-05 31.0 0.7 46 79-127 19-65 (170)
140 3knv_A TNF receptor-associated 55.6 2.4 8.2E-05 30.1 -0.0 45 79-126 32-77 (141)
141 4gne_A Histone-lysine N-methyl 54.4 17 0.00057 24.5 4.1 52 49-125 13-68 (107)
142 2c2l_A CHIP, carboxy terminus 54.0 5.4 0.00019 31.0 1.8 50 75-127 205-255 (281)
143 2ysj_A Tripartite motif-contai 53.6 4.2 0.00014 24.0 0.9 14 97-110 36-49 (63)
144 2ysm_A Myeloid/lymphoid or mix 52.2 19 0.00064 24.1 4.1 94 50-173 6-103 (111)
145 2bay_A PRE-mRNA splicing facto 52.1 5.9 0.0002 23.6 1.4 47 79-128 4-51 (61)
146 3nw0_A Non-structural maintena 51.3 5.6 0.00019 30.9 1.4 11 117-127 219-229 (238)
147 1g25_A CDK-activating kinase a 51.1 7.3 0.00025 23.1 1.7 50 79-128 4-56 (65)
148 2ecg_A Baculoviral IAP repeat- 50.9 5 0.00017 24.8 0.9 41 80-127 27-68 (75)
149 2dmj_A Poly (ADP-ribose) polym 49.3 6.7 0.00023 26.4 1.4 29 117-145 27-65 (106)
150 1v9x_A Poly (ADP-ribose) polym 48.4 7.6 0.00026 26.6 1.6 29 117-145 22-60 (114)
151 2ecj_A Tripartite motif-contai 47.9 5.4 0.00018 22.9 0.7 12 52-63 16-27 (58)
152 4g9i_A Hydrogenase maturation 46.9 15 0.00052 33.6 3.7 87 46-153 101-188 (772)
153 2f42_A STIP1 homology and U-bo 43.0 8.7 0.0003 28.5 1.3 49 76-127 104-153 (179)
154 1wfl_A Zinc finger protein 216 43.0 40 0.0014 21.1 4.1 14 49-62 23-36 (74)
155 2vpb_A Hpygo1, pygopus homolog 42.3 10 0.00036 23.0 1.4 27 117-143 10-39 (65)
156 1weo_A Cellulose synthase, cat 41.3 12 0.0004 24.4 1.5 12 164-175 42-53 (93)
157 3od8_A Poly [ADP-ribose] polym 39.6 9.1 0.00031 26.3 0.9 13 117-129 40-52 (116)
158 2gvi_A Conserved hypothetical 39.6 7.9 0.00027 29.3 0.6 30 79-110 173-202 (204)
159 2yho_A E3 ubiquitin-protein li 39.3 20 0.00069 22.3 2.5 41 80-127 20-61 (79)
160 2ea5_A Cell growth regulator w 39.0 18 0.0006 21.9 2.1 29 95-127 29-58 (68)
161 3odc_A Poly [ADP-ribose] polym 38.7 10 0.00035 25.7 1.0 13 117-129 21-33 (111)
162 3t6p_A Baculoviral IAP repeat- 38.0 26 0.00087 28.7 3.5 42 79-127 296-338 (345)
163 1e4u_A Transcriptional repress 37.9 11 0.00036 23.7 0.9 29 99-127 33-62 (78)
164 2das_A Zinc finger MYM-type pr 37.9 20 0.00068 21.5 2.0 28 144-171 21-51 (62)
165 2vje_B MDM4 protein; proto-onc 36.1 13 0.00045 22.0 1.1 29 98-126 26-55 (63)
166 2yu4_A E3 SUMO-protein ligase 35.6 36 0.0012 21.8 3.4 34 142-177 6-40 (94)
167 1uw0_A DNA ligase III; DNA rep 35.6 11 0.00039 25.7 0.9 13 117-129 17-29 (117)
168 3ttc_A HYPF, transcriptional r 35.3 11 0.00038 33.7 0.9 87 46-153 12-99 (657)
169 1wfp_A Zinc finger (AN1-like) 34.6 55 0.0019 20.4 3.8 16 47-62 21-36 (74)
170 1m5h_A Formylmethanofuran--tet 34.2 12 0.00041 29.7 0.9 18 3-20 136-153 (297)
171 1ftr_A FTR, formylmethanofuran 33.2 12 0.0004 29.7 0.7 18 3-20 139-156 (296)
172 2dip_A Zinc finger SWIM domain 33.1 41 0.0014 22.2 3.3 35 139-175 28-65 (98)
173 1m5s_A Formylmethanofuran--tet 33.0 12 0.00041 29.7 0.7 18 3-20 136-153 (297)
174 2ds5_A CLPX, ATP-dependent CLP 32.9 46 0.0016 19.1 3.1 32 144-175 12-43 (51)
175 2vje_A E3 ubiquitin-protein li 32.9 15 0.00051 21.8 1.0 29 98-126 27-56 (64)
176 2cot_A Zinc finger protein 435 31.8 27 0.00092 20.8 2.1 40 49-89 16-57 (77)
177 2d8s_A Cellular modulator of i 30.4 53 0.0018 20.5 3.4 31 49-79 13-49 (80)
178 1ovx_A ATP-dependent CLP prote 29.8 46 0.0016 20.4 2.8 32 144-175 19-50 (67)
179 1wg2_A Zinc finger (AN1-like) 28.8 51 0.0018 19.9 2.9 14 49-62 13-26 (64)
180 2d8v_A Zinc finger FYVE domain 28.2 12 0.00042 22.9 -0.0 14 162-175 25-38 (67)
181 2epr_A POZ-, at HOOK-, and zin 28.0 19 0.00065 19.2 0.8 15 50-64 11-25 (48)
182 2e6s_A E3 ubiquitin-protein li 27.6 66 0.0022 20.0 3.4 45 100-145 9-57 (77)
183 3vth_A Hydrogenase maturation 27.5 26 0.00088 32.0 2.0 88 45-153 105-193 (761)
184 2lv2_A Insulinoma-associated p 26.7 25 0.00087 22.2 1.3 40 49-89 26-67 (85)
185 1pft_A TFIIB, PFTFIIBN; N-term 26.6 24 0.00081 19.8 1.1 7 80-86 7-13 (50)
186 2cs2_A Poly [ADP-ribose] polym 26.3 22 0.00076 24.9 1.0 13 117-129 29-41 (134)
187 3gj5_B Nuclear pore complex pr 25.9 32 0.0011 18.0 1.4 26 99-124 5-30 (34)
188 3d00_A Tungsten formylmethanof 25.8 15 0.00053 27.4 0.2 25 143-174 163-187 (191)
189 3htk_C E3 SUMO-protein ligase 25.7 42 0.0014 26.5 2.6 32 78-112 181-213 (267)
190 1wev_A Riken cDNA 1110020M19; 25.5 23 0.00079 22.7 1.0 58 117-180 18-78 (88)
191 2ebq_A Nuclear pore complex pr 25.2 33 0.0011 19.4 1.4 29 99-127 9-37 (47)
192 1wim_A KIAA0161 protein; ring 24.8 51 0.0017 20.9 2.6 33 144-176 6-39 (94)
193 2dmi_A Teashirt homolog 3; zin 24.6 16 0.00055 23.8 0.0 11 143-153 80-90 (115)
194 2lo3_A SAGA-associated factor 24.1 19 0.00066 19.9 0.3 20 48-67 14-33 (44)
195 2y1n_A E3 ubiquitin-protein li 23.9 31 0.0011 28.8 1.7 46 79-127 333-379 (389)
196 1znf_A 31ST zinc finger from X 23.0 28 0.00096 15.3 0.8 10 144-153 2-11 (27)
197 2xb1_A Pygopus homolog 2, B-ce 22.8 48 0.0016 22.0 2.2 51 117-175 5-62 (105)
198 3gj3_B Nuclear pore complex pr 22.8 39 0.0013 17.5 1.3 25 100-124 6-30 (33)
199 2ebr_A Nuclear pore complex pr 22.6 33 0.0011 19.4 1.1 31 97-127 7-37 (47)
200 1x6e_A Zinc finger protein 24; 22.0 22 0.00075 20.9 0.3 40 49-89 12-53 (72)
201 2hf1_A Tetraacyldisaccharide-1 21.6 37 0.0013 20.7 1.3 24 79-107 9-32 (68)
202 2jny_A Uncharacterized BCR; st 21.6 38 0.0013 20.7 1.3 24 79-107 11-34 (67)
203 1ard_A Yeast transcription fac 21.5 30 0.001 15.4 0.8 10 144-153 3-12 (29)
204 2jr6_A UPF0434 protein NMA0874 21.4 39 0.0014 20.6 1.4 10 79-88 9-18 (68)
205 2kvh_A Zinc finger and BTB dom 21.0 26 0.00089 15.6 0.4 10 144-153 4-13 (27)
206 2js4_A UPF0434 protein BB2007; 20.8 36 0.0012 20.9 1.1 9 80-88 10-18 (70)
No 1
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.97 E-value=4.5e-32 Score=198.15 Aligned_cols=127 Identities=55% Similarity=1.169 Sum_probs=116.0
Q ss_pred CccccccccccccceeEeecCccccccCccccCCCcccCcCCCeEEeeCCeecccccccccccCcccccccCCccCCCce
Q psy7480 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 130 (204)
Q Consensus 51 ~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~~~~~C~~C~~~I~~~~~ 130 (204)
.++|.+|+++|.+.+++.++++.||++||+|..|+.+|.+.+..|+.++|++||..||.++|++.++|..|+++|.+.+.
T Consensus 2 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~e~ 81 (131)
T 2xjy_A 2 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEM 81 (131)
T ss_dssp CCBBTTTCCBCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECTTSE
T ss_pred cccCcCCCCEeCCcEEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCccce
Confidence 46899999999998778999999999999999999999743467999999999999999999864589999999988778
Q ss_pred EEecCCcccccCccccccCCccccCCCeEEEeCCeeecHHHHHHHhh
Q psy7480 131 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQV 177 (204)
Q Consensus 131 ~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~ 177 (204)
+|.+.++.||++||+|..|+++|..+..|++.++++||..||.+++.
T Consensus 82 ~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~C~~c~~~~~~ 128 (131)
T 2xjy_A 82 TMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTK 128 (131)
T ss_dssp EEEETTEEEEGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGHHHHHH
T ss_pred eEeeCCceECccCcccCCCCCCCCCCCEEEEECCEEEcHHHHHHHhh
Confidence 99999999999999999999999668889999999999999998864
No 2
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.97 E-value=2.7e-31 Score=192.79 Aligned_cols=122 Identities=24% Similarity=0.517 Sum_probs=113.0
Q ss_pred CCccccccccccccceeEeecCccccccCccccCCCcccCcCCCeEEeeCCeecccccccccccCcccccccCCccCCCc
Q psy7480 50 GLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 129 (204)
Q Consensus 50 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~~~~~C~~C~~~I~~~~ 129 (204)
..++|.+|+++|.+++++.++|+.||++||+|..|+++|. +..|+.++|++||..||.++|++ +|.+|+++|.+.+
T Consensus 2 ~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~--~~~f~~~~g~~yC~~cy~~~~~~--~C~~C~~~I~~~~ 77 (126)
T 2xqn_T 2 EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILA--GEIYVMVNDKPVCKPCYVKNHAV--VCQGCHNAIDPEV 77 (126)
T ss_dssp CCCBBTTTSSBCCSSCEEEETTEEECGGGSBCTTTCCBCT--TSEEEEETTEEEEHHHHHHHSCC--BCTTTCSBCCTTS
T ss_pred cCCCCccCCCEeCCceEEeeCCCCccCCCCCcCCCCCCCC--cCEEEeECCEEechHHhCcCcCc--cCcccCCcCCcCc
Confidence 4578999999999877899999999999999999999997 46799999999999999999998 9999999999767
Q ss_pred eEEecCCcccc--cCccccccCCccccCCCeEEEeCCeeecHHHHHHHh
Q psy7480 130 MVMRAKNNVYH--LECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQ 176 (204)
Q Consensus 130 ~~~~~~~~~~H--~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~ 176 (204)
.+|.+.++.|| ++||+|..|+++| .+..|++.+|++||+.++.++|
T Consensus 78 ~~~~a~~~~~H~~~~CF~C~~C~~~l-~~~~f~~~~~~~yC~~~~~~~f 125 (126)
T 2xqn_T 78 QRVTYNNFSWHASTECFLCSCCSKCL-IGQKFMPVEGMVFCSVECKKRM 125 (126)
T ss_dssp CEEEETTEEEESSTTTSBCTTTCCBC-TTSEEEEETTEEESSHHHHHSC
T ss_pred eEEECCCCEeeCCCCCcCcCCCCCcc-CCCeeEeECCEEcchHHhhhhc
Confidence 89999999999 9999999999999 6889999999999998888764
No 3
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.96 E-value=8.2e-31 Score=202.69 Aligned_cols=130 Identities=48% Similarity=1.080 Sum_probs=115.9
Q ss_pred CCccccccccccccceeEeecCccccccCccccCCCcccCcCCCeEEeeCCeecccccccccccCcccccccCCccCCCc
Q psy7480 50 GLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 129 (204)
Q Consensus 50 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~~~~~C~~C~~~I~~~~ 129 (204)
..++|.+|+++|.+.+++.++++.||++||+|..|+.+|...+..|+.++|++||..||.++|++.++|..|+++|.+.+
T Consensus 4 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~e 83 (188)
T 1rut_X 4 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPASE 83 (188)
T ss_dssp CCCBBTTTCCBCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECTTS
T ss_pred CCCcCccCCCEeCCceeEEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccccCc
Confidence 46789999999998877899999999999999999999973245799999999999999999997336999999998777
Q ss_pred eEEecCCcccccCccccccCCccccCCCeEEEeCCeeecHHHHHHHhhhh
Q psy7480 130 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFA 179 (204)
Q Consensus 130 ~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~ 179 (204)
.+|.+.++.||++||+|..|+++|..+..|+..++++||+.||.+++...
T Consensus 84 ~~i~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~c~~~~~~~~ 133 (188)
T 1rut_X 84 LVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTALING 133 (188)
T ss_dssp EEEEETTEEECGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGCCTTTC--
T ss_pred EEEEcCCCEEeCCCCeECCCCCCCCCCCeEEEECCeEECHHHHHHHhccc
Confidence 88999999999999999999999965788999999999999998876433
No 4
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.96 E-value=2.3e-30 Score=196.99 Aligned_cols=125 Identities=43% Similarity=0.941 Sum_probs=110.8
Q ss_pred CCCccccccccccccceeEeecCccccccCccccCCCcccCcCCCeEEeeCCeecccccccccccCcccccccCCccCCC
Q psy7480 49 GGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 128 (204)
Q Consensus 49 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~~~~~C~~C~~~I~~~ 128 (204)
...++|.+|+++|.+.+++.++|+.||++||+|..|+.+|.. .. +.++|++||..||.++|++ +|.+|+++|.+.
T Consensus 4 ~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~--~~-f~~~g~~yC~~~y~~~f~~--~C~~C~~~I~~~ 78 (169)
T 2rgt_A 4 PEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAE--RC-FSRGESVYCKDDFFKRFGT--KCAACQLGIPPT 78 (169)
T ss_dssp ---CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCS--CC-EESSSCEECHHHHHHHHSC--BCTTTCCBCCTT
T ss_pred CCCCccccCCCccCCcEEEEECCcEEccccCccCCCCCcCCC--CC-cccCCeeeecccccccccc--cccccccccCCC
Confidence 346799999999999877899999999999999999999983 33 6899999999999999998 999999999887
Q ss_pred ceEEecCCcccccCccccccCCccccCCCeEEE-eCCeeecHHHHHHHhhh
Q psy7480 129 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYL-CDNKILCEYDYEERQVF 178 (204)
Q Consensus 129 ~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~-~~~~~~C~~c~~~~~~~ 178 (204)
+.++.+.++.||++||+|..|+++|..|+.|+. .+|++||+.||.+++..
T Consensus 79 ~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~~~~ 129 (169)
T 2rgt_A 79 QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQG 129 (169)
T ss_dssp SEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHHHHC
T ss_pred cEEEEcCCceEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHHHHhhc
Confidence 778899999999999999999999965778875 58999999999988643
No 5
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.96 E-value=4.1e-29 Score=192.23 Aligned_cols=124 Identities=44% Similarity=0.968 Sum_probs=111.4
Q ss_pred CCCCCccccccccccccceeEeecCccccccCccccCCCcccCcCCCeEEeeCCeecccccccccccCcccccccCCccC
Q psy7480 47 ASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIP 126 (204)
Q Consensus 47 ~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~~~~~C~~C~~~I~ 126 (204)
.....++|.+|+++|.+.+++.++++.||+.||+|..|+++|.. .. |.++|++||..||.++|++ +|..|+++|.
T Consensus 56 ~~~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~--~~-f~~~g~~yC~~~y~~~f~~--kC~~C~~~I~ 130 (182)
T 2jtn_A 56 GTPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAE--RC-FSRGESVYCKDDFFKRFGT--KCAACQLGIP 130 (182)
T ss_dssp CCCSCCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSS--CC-EEETTEEECHHHHHHTTSC--CCTTTCCCCC
T ss_pred CCCCCCcCccCCCCccCceeEEecCCeEccccCccCCCCCccCC--Cc-eeECCEeeecCcccccccc--ccccCCCccC
Confidence 45667899999999999877899999999999999999999983 33 5899999999999999998 9999999998
Q ss_pred CCceEEecCCcccccCccccccCCccccCCCeEEE-eCCeeecHHHHHHH
Q psy7480 127 AFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYL-CDNKILCEYDYEER 175 (204)
Q Consensus 127 ~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~-~~~~~~C~~c~~~~ 175 (204)
+.+.++.+.++.||++||+|..|+++|..+..|+. .+|++||+.||.++
T Consensus 131 ~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC~~cy~~~ 180 (182)
T 2jtn_A 131 PTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETA 180 (182)
T ss_dssp SSCCCCEETTEECCTTTCCCTTTCCCCCTTCEEEECTTSCEECHHHHHHH
T ss_pred CCceEEecCCCCEEeCCCcCCCCCCCCCCCCceEEccCCEEECHHHHHHh
Confidence 86667889999999999999999999965778875 58999999999865
No 6
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.95 E-value=1.8e-28 Score=190.18 Aligned_cols=133 Identities=22% Similarity=0.454 Sum_probs=114.7
Q ss_pred CCCCccccccccccccceeEeecCccccccCccccCCCcccCcCCCeEEeeCCeecccccccccccCc------------
Q psy7480 48 SGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTT------------ 115 (204)
Q Consensus 48 ~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~~~------------ 115 (204)
..+.++|.+|+++|...+.+.++++.||++||+|..|+.+|.. ..|+.++|++||+.||.++|++.
T Consensus 4 ~~~~~~C~~C~~~I~~~~~v~a~g~~wH~~CF~C~~C~~~L~~--~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~~g~~~ 81 (192)
T 1b8t_A 4 WGGGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDS--TTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLS 81 (192)
T ss_dssp CCCCEECTTTCCEECSSCCEEETTEEECTTTCBCTTTCCBCCS--SSEEEETTEEEEHHHHHHHHSCCCCCCCCCCCCCC
T ss_pred CCCCCcCccCCCeecceeEEEeCCceecCCCCcCcccCCcCCC--CeeEecCCEeeChhhhHhhcCccccccccccccEe
Confidence 3456899999999987667889999999999999999999984 46899999999999999998761
Q ss_pred ----------------------------------ccccccCCccCCCceEEecCCcccccCccccccCCccccCCCeEEE
Q psy7480 116 ----------------------------------GYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYL 161 (204)
Q Consensus 116 ----------------------------------~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~ 161 (204)
++|.+|+++|.+. ..|.+.++.||++||+|..|+++| .+..|+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~C~~C~~~I~~~-~~v~a~~~~~H~~CF~C~~C~~~L-~~~~~~~ 159 (192)
T 1b8t_A 82 TDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAA-EKVIGAGKSWHKSCFRCAKCGKSL-ESTTLAD 159 (192)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECTTTSCEECSS-SCEEETTEEECTTTCBCTTTCCBC-CSSSEEE
T ss_pred cCCCcccccccccccccCCCCcCccccccccCCCCcCCCCCCEecCc-EEEecCCCccchhcCCccccCCCC-CCCcccc
Confidence 1388999999864 456799999999999999999999 5567999
Q ss_pred eCCeeecHHHHHHHhhhhcccCC
Q psy7480 162 CDNKILCEYDYEERQVFANIAYN 184 (204)
Q Consensus 162 ~~~~~~C~~c~~~~~~~~~~~~~ 184 (204)
.+|++||+.||.++|........
T Consensus 160 ~~g~~yC~~cy~~~f~~kc~~C~ 182 (192)
T 1b8t_A 160 KDGEIYCKGCYAKNFGPKGFGFG 182 (192)
T ss_dssp ETTEEEEHHHHHHHTCCCCCCCC
T ss_pred cCCEEeCHHHHHHhcCCcCCCCC
Confidence 99999999999999876665554
No 7
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.93 E-value=4.8e-26 Score=158.85 Aligned_cols=98 Identities=30% Similarity=0.574 Sum_probs=89.9
Q ss_pred CCCcccccccccccc-ceeEeecCccccccCccccCCCcccCcCCCeEEeeCCeecccccccccccCcccccccCCccCC
Q psy7480 49 GGLKECASCGKRITE-RFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 127 (204)
Q Consensus 49 ~~~~~C~~C~~~I~~-~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~~~~~C~~C~~~I~~ 127 (204)
.+.++|.+|+++|.. ..++.++++.||+.||+|..|+++|. +..|+.++|++||..||.++|++ +|.+|+++|.+
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~--~~~~~~~~g~~yC~~cy~~~~~~--~C~~C~~~I~~ 78 (101)
T 2cup_A 3 SGSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLA--NETFVAKDNKILCNKCTTREDSP--KCKGCFKAIVA 78 (101)
T ss_dssp SCCCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTT--SSCCEEETTEEECHHHHTTCCCC--BCSSSCCBCCS
T ss_pred CCCCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCC--cCeeECcCCEEEChhHhhhhcCC--ccccCCCcccc
Confidence 456899999999984 56899999999999999999999997 46689999999999999999998 99999999986
Q ss_pred CceEEecCCcccccCccccccCC
Q psy7480 128 FEMVMRAKNNVYHLECFACQQCN 150 (204)
Q Consensus 128 ~~~~~~~~~~~~H~~Cf~C~~C~ 150 (204)
.+.+|.++++.||++||+|..|+
T Consensus 79 ~~~~~~a~~~~~H~~CF~C~~C~ 101 (101)
T 2cup_A 79 GDQNVEYKGTVWHKDCFSGPSSG 101 (101)
T ss_dssp SSCEEESSSCEEETTTCCCTTCC
T ss_pred CCeEEEeCCcchHHhCCCCCCCC
Confidence 56899999999999999999996
No 8
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.87 E-value=1.1e-23 Score=151.83 Aligned_cols=112 Identities=33% Similarity=0.743 Sum_probs=95.9
Q ss_pred CCCccccccccccccceeEeecCccccccCccccCCCcccCcCCCeEEeeCCeecccccccccccCcccccccCCccCCC
Q psy7480 49 GGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 128 (204)
Q Consensus 49 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~~~~~C~~C~~~I~~~ 128 (204)
...++|.+|+++|.+.+++.++++.||++||+|..|+.+|.+.+..|+.++|++||..||.++|++.++|++|+++|.+
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~- 81 (122)
T 1m3v_A 3 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG- 81 (122)
T ss_dssp SCCCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCC-
T ss_pred CCCCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCc-
Confidence 4568999999999998778999999999999999999999632356899999999999999999976689999999986
Q ss_pred ceEEecCCcccccCccccccCCccccCCCeEEEeCCeeecHHHHHHHh
Q psy7480 129 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQ 176 (204)
Q Consensus 129 ~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~ 176 (204)
..+.+.++ ..| .|+.|+..++++||..||.+++
T Consensus 82 -~~~~~~g~-------------~~l-~g~~f~~~~~~~yC~~~~~~~~ 114 (122)
T 1m3v_A 82 -GDVMVVGE-------------PTL-MGGEFGDEDERLITRLENTQFD 114 (122)
T ss_dssp -EESSSSSS-------------SSC-CSCTTCCTTCCCCEECTTTTTT
T ss_pred -hheEEcCC-------------cCC-CCCccEecCCEeEccCcchhch
Confidence 44555553 245 7889999999999999988764
No 9
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=8.7e-21 Score=127.15 Aligned_cols=78 Identities=21% Similarity=0.387 Sum_probs=71.2
Q ss_pred CCeecccccccccccCcccccccCCccCCCceEEecCCcccccCccccccCCccccCCCeEEEeCCeeecHHHHHHHhhh
Q psy7480 99 ANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVF 178 (204)
Q Consensus 99 ~g~~~C~~cy~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~ 178 (204)
+|++||+.||.++|++ +|.+|+++|.+.+.+|.+.++.||++||+|+.|+++| .+..|+..++++||+.||.+++..
T Consensus 1 ~g~~yC~~~y~~~~~~--~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L-~~~~f~~~~~~~~C~~c~~~~~~~ 77 (82)
T 2ehe_A 1 GSSGSSGPCYDNTFAN--TCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSL-ADEPFTCQDSELLCNDCYCSAFSS 77 (82)
T ss_dssp CCCCCCCCCCCCCCSC--BCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBC-SSCCEEEETTEEEETTTSSCCGGG
T ss_pred CCceechhHhCcccCC--cCccCCCccccCcEEEEeCCccccccCCeecCCCCcc-CCCccEeeCCEEECHHHHhhhcCC
Confidence 5789999999999998 9999999998656889999999999999999999999 677899999999999999887654
Q ss_pred h
Q psy7480 179 A 179 (204)
Q Consensus 179 ~ 179 (204)
.
T Consensus 78 ~ 78 (82)
T 2ehe_A 78 G 78 (82)
T ss_dssp S
T ss_pred C
Confidence 3
No 10
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.81 E-value=2.2e-21 Score=138.13 Aligned_cols=104 Identities=39% Similarity=0.764 Sum_probs=88.0
Q ss_pred CCccccccccccccceeEeecCccccccCccccCCCcccCcCCCeEEeeCCeecccccccccccCcccccccCCccCCCc
Q psy7480 50 GLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 129 (204)
Q Consensus 50 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~~~~~C~~C~~~I~~~~ 129 (204)
..++|.+|+++|.+.+++.++++.||+.||+|..|+.+|.+.+..|+.++|++||..||.++|++ +|..|.. +
T Consensus 2 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~--~c~~c~~---~-- 74 (114)
T 1j2o_A 2 SLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGS--GGHMGSG---G-- 74 (114)
T ss_dssp CCBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTS--CCSSCBS---C--
T ss_pred cCCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCc--ccCcCCC---C--
Confidence 35789999999998878999999999999999999999974335789999999999999999999 9988862 2
Q ss_pred eEEecCCcccccCccccccCCccccCCCeEEEeCCeeecHHHHHHH
Q psy7480 130 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEER 175 (204)
Q Consensus 130 ~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~ 175 (204)
.+|. |+.++..|+.|++.++++||..|+.++
T Consensus 75 ~~~~---------------~~~~~~~g~~f~~~~~~~~C~~~~~~~ 105 (114)
T 1j2o_A 75 DVMV---------------VGEPTLMGGEFGDEDERLITRLENTQF 105 (114)
T ss_dssp SCCC---------------SSCSSTTSSBCCCSSSCCCEEEECTTC
T ss_pred ceeE---------------cCCccCCCCeeEEcCCEeecchhhhcc
Confidence 2332 445554788999999999999998875
No 11
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.81 E-value=4.7e-20 Score=123.54 Aligned_cols=77 Identities=21% Similarity=0.335 Sum_probs=70.0
Q ss_pred CCeecccccccccccCcccccccCCccCCCceEEecCCcccccCccccccCCccccCCCeEEEeCCeeecHHHHHHHhhh
Q psy7480 99 ANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVF 178 (204)
Q Consensus 99 ~g~~~C~~cy~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~ 178 (204)
++.+||+.||.+++++ +|.+|+++|.+.+.+|.+.++.||++||+|..|+++| .+..|+..++++||+.||.++|..
T Consensus 1 ~~~~yC~~cy~~~~~~--~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~~~~yC~~cy~~~f~~ 77 (82)
T 1x63_A 1 GSSGSSGKCTTREDSP--KCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVI-GTGSFFPKGEDFYCVTCHETKFAS 77 (82)
T ss_dssp CCSCCCCCCCSCCCSC--BCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCC-TTSCEEEETTEEEEHHHHHHHTSC
T ss_pred CCCcCchhHHccccCC--cCccCCcccccCceEEEECccccccccCchhhCCCcc-CCCccEeeCCEEECHHHHHHHhCC
Confidence 3679999999999998 9999999998767889999999999999999999999 556899999999999999988543
No 12
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.80 E-value=4.2e-20 Score=123.20 Aligned_cols=76 Identities=21% Similarity=0.405 Sum_probs=69.4
Q ss_pred CCeecccccccccccCcccccccCCccCCCceEEecCCcccccCccccccCCccccCCCeEEEeCCeeecHHHHHHHhhh
Q psy7480 99 ANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVF 178 (204)
Q Consensus 99 ~g~~~C~~cy~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~ 178 (204)
+|++||+.||.+++++ +|.+|+++|.+ ..|.+.++.||++||+|..|+++| .+..|+..++++||+.||.++|..
T Consensus 1 gg~~yC~~cy~~~~~~--~C~~C~~~I~~--~~v~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~~~~yC~~cy~~~f~~ 75 (80)
T 2cuq_A 1 GSSGSSGPCYENKFAP--RCARCSKTLTQ--GGVTYRDQPWHRECLVCTGCQTPL-AGQQFTSRDEDPYCVACFGELFAS 75 (80)
T ss_dssp CCCCSCCCCCCCCSSC--CCTTTCCCCCS--CCEESSSSEECTTTCBCSSSCCBC-TTCCEEECSSSEEEHHHHHHHTTC
T ss_pred CCcEEcHHHHccccCC--cCCCCCCEecC--cEEEECCchhhhhhCCcccCCCcC-CCCeeEeECCEEECHHHHHHHcCC
Confidence 4789999999999998 99999999976 578999999999999999999999 677899999999999999998654
Q ss_pred h
Q psy7480 179 A 179 (204)
Q Consensus 179 ~ 179 (204)
.
T Consensus 76 ~ 76 (80)
T 2cuq_A 76 G 76 (80)
T ss_dssp S
T ss_pred C
Confidence 3
No 13
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=3.5e-20 Score=122.70 Aligned_cols=73 Identities=19% Similarity=0.429 Sum_probs=67.3
Q ss_pred CCeecccccccccccCcccccccCCccCC---CceEEecCCcccccCccccccCCccccCCCeEEEeCCeeecHHHHHH
Q psy7480 99 ANLILCKRDYLRLFGTTGYCAACTKVIPA---FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 174 (204)
Q Consensus 99 ~g~~~C~~cy~~~~~~~~~C~~C~~~I~~---~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~ 174 (204)
++++||+.||.+++++ +|++|+++|.+ .+.+|.+.++.||++||+|..|+++| .+..|+..++++||+.||.+
T Consensus 1 g~~~yC~~cy~~~~~~--~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L-~~~~f~~~~~~~yC~~cy~~ 76 (77)
T 2egq_A 1 GSSGSSGDCYKNFVAK--KCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNL-ANKRFVFHQEQVYCPDCAKK 76 (77)
T ss_dssp CCSSCCTTCCCSCCCC--CCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBC-TTSCCCEETTEECCHHHHHH
T ss_pred CCCeEchhHhchhhCc--cCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCC-CCCccEeECCEEEChHHhcc
Confidence 4689999999999998 99999999986 45789999999999999999999999 67789999999999999975
No 14
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.79 E-value=8.4e-20 Score=121.71 Aligned_cols=76 Identities=26% Similarity=0.624 Sum_probs=68.9
Q ss_pred CCeecccccccccccCcccccccCCccCCCceEEecCCcccccCccccccCCccccCCCeEEEeCCeeecHHHHHHHhhh
Q psy7480 99 ANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVF 178 (204)
Q Consensus 99 ~g~~~C~~cy~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~ 178 (204)
+|++||+.||.+++++ +|.+|+++|.+ .+|.+.++.||++||+|..|+++| .+..|+..++++||+.||.++|..
T Consensus 1 gg~~yC~~~y~~~~~~--~C~~C~~~I~~--~~v~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~~~~yC~~~y~~~f~~ 75 (80)
T 1x3h_A 1 GSSGSSGKDFLAMFSP--KCGGCNRPVLE--NYLSAMDTVWHPECFVCGDCFTSF-STGSFFELDGRPFCELHYHHRRGS 75 (80)
T ss_dssp CCCCCCCCCCCCCCSC--BCTTTCCBCCS--SCEEETTEEECTTTCBCSSSCCBS-CSSCCEESSSCEECHHHHHHHHSS
T ss_pred CCCccchhHHhhhcCC--ccccCCCeecc--eeEEECCCeEecCcCChhhCCCCC-CCCcEEeECCEEECHHHHHHHcCC
Confidence 4789999999999998 99999999986 678999999999999999999999 555799999999999999998654
Q ss_pred h
Q psy7480 179 A 179 (204)
Q Consensus 179 ~ 179 (204)
.
T Consensus 76 ~ 76 (80)
T 1x3h_A 76 G 76 (80)
T ss_dssp S
T ss_pred C
Confidence 4
No 15
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.78 E-value=2.2e-19 Score=120.00 Aligned_cols=75 Identities=28% Similarity=0.496 Sum_probs=67.9
Q ss_pred CeecccccccccccCcccccccCCccCCCceEEecCCcccccCccccccCCccccCCCeEEE-eCCeeecHHHHHHHhhh
Q psy7480 100 NLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYL-CDNKILCEYDYEERQVF 178 (204)
Q Consensus 100 g~~~C~~cy~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~-~~~~~~C~~c~~~~~~~ 178 (204)
+.+||+.||.++|++ +|.+|+++|.+ .+|.+.++.||++||+|..|+++|..+..|++ .++++||+.||.++|..
T Consensus 2 ~~~yC~~~y~~~~~~--~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~~ 77 (81)
T 1x6a_A 2 SSGSSGKDYWGKFGE--FCHGCSLLMTG--PFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSG 77 (81)
T ss_dssp CCCCCCCCSSCCSSC--BCTTTCCBCCS--CCBCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHCT
T ss_pred CCccchhHHhhhcCC--cCccCCCCcCc--eEEEECCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhcC
Confidence 578999999999998 99999999984 78999999999999999999999965678884 89999999999988643
No 16
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.76 E-value=4e-19 Score=118.70 Aligned_cols=75 Identities=24% Similarity=0.456 Sum_probs=66.9
Q ss_pred CCeecccccccccccCcccccccCCccCCCceEEecCCcccccCccccccCCccccCCCeEEEe-CCeeecHHHHHHHhh
Q psy7480 99 ANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYEERQV 177 (204)
Q Consensus 99 ~g~~~C~~cy~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~-~~~~~C~~c~~~~~~ 177 (204)
+|++||+.||. .+++ +|.+|+++|.+ .+|.+.++.||++||+|..|+++| .+..|+.. +|++||+.||.++|.
T Consensus 2 ~g~~yC~~~y~-~~~~--~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~~L-~~~~f~~~~~g~~yC~~cy~~~f~ 75 (81)
T 2dlo_A 2 SSGSSGEGCYV-ATLE--KCATCSQPILD--RILRAMGKAYHPGCFTCVVCHRGL-DGIPFTVDATSQIHCIEDFHRKFA 75 (81)
T ss_dssp CCCCCCCCCCC-SSCC--BCTTTCCBCCS--CCEEETTEEECTTTCBCSSSCCBC-TTSCEECCTTCCCEEHHHHHHHTT
T ss_pred cCCEECHHHhh-cCCC--ccccCCCeecc--eeEEECCccccHHhcCcccCCCcc-CCCeeEECCCCEEECHHHHHHHhc
Confidence 68999999999 6777 99999999975 689999999999999999999999 67788876 799999999999865
Q ss_pred hh
Q psy7480 178 FA 179 (204)
Q Consensus 178 ~~ 179 (204)
..
T Consensus 76 ~~ 77 (81)
T 2dlo_A 76 SG 77 (81)
T ss_dssp SS
T ss_pred Cc
Confidence 43
No 17
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.70 E-value=1e-17 Score=111.82 Aligned_cols=72 Identities=31% Similarity=0.581 Sum_probs=62.8
Q ss_pred CeecccccccccccCcccccccCCccCCCceEEecCCcccccCccccccCCccccCCCeEEEeCCeeecHHHHHHH
Q psy7480 100 NLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEER 175 (204)
Q Consensus 100 g~~~C~~cy~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~ 175 (204)
+.+||..||.++|++ +|..|+++|.+ .+|.+.++.||++||+|..|+++|..+..|...++.+||..||.++
T Consensus 2 ~~~yC~~dy~~~~~~--~C~~C~~~I~~--~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~ 73 (81)
T 1v6g_A 2 SSGSSGLDYQRLYGT--RCFSCDQFIEG--EVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPV 73 (81)
T ss_dssp CCCCCCSCGGGSCCC--BCTTTCCBCCS--CCEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCC
T ss_pred CCCcchHHHHhHhCC--cCccccCEecc--ceEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhccc
Confidence 468999999999998 99999999985 6889999999999999999999995555555566678999999765
No 18
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=8.2e-17 Score=106.08 Aligned_cols=71 Identities=23% Similarity=0.412 Sum_probs=64.0
Q ss_pred ccccccccccccceeEeecCccccccCccccCCCcccCcCCCeEEeeCCeeccc-ccccccccCcccccccCCccC
Q psy7480 52 KECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCK-RDYLRLFGTTGYCAACTKVIP 126 (204)
Q Consensus 52 ~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~~~g~~~C~-~cy~~~~~~~~~C~~C~~~I~ 126 (204)
++|.+|+++|...+.+.++++.||++||+|..|+.+|.. ..|+.++|++||. .||.++|++ +|.+|++.+.
T Consensus 1 p~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~--~~~~~~~g~~yC~~~cy~~~f~~--~C~~C~~~~~ 72 (76)
T 1iml_A 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTS--GGHAEHEGKPYCNHPCYSAMFGP--KGFGRGGAES 72 (76)
T ss_dssp CBCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCT--TTEEEETTEEEETTTHHHHHSSC--CCSSCCCSSS
T ss_pred CcCCCCCCEEECceEEEECCccccCCCCCccccCccCCC--CceECcCCeEeeCHHHHHHHhCc--cCCCcCCcee
Confidence 579999999996657899999999999999999999984 4689999999999 699999998 9999997664
No 19
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=1.4e-16 Score=106.00 Aligned_cols=69 Identities=33% Similarity=0.641 Sum_probs=61.5
Q ss_pred CCCCCccccccccccccceeEeecCccccccCccccCCCcccCcCCCeEEeeCCeecccccccccccCcccccc
Q psy7480 47 ASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAA 120 (204)
Q Consensus 47 ~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~~~~~C~~ 120 (204)
.....++|.+|+++|...+.+.++++.||++||+|..|+..|. + .|+.+++++||..||.++|++ +|+.
T Consensus 11 ~~~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~--~-~~~~~~g~~yC~~~y~~~fg~--~C~~ 79 (80)
T 2dj7_A 11 KIRGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILT--G-EYISKDGVPYCESDYHAQFGS--GPSS 79 (80)
T ss_dssp CCSSCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCS--S-CCEEETTEEECTTHHHHHTTC--CSTT
T ss_pred CCCCCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcC--C-CeEEECCEEECHHHHHHHcCC--CCCC
Confidence 3456789999999999776789999999999999999999997 2 489999999999999999998 8864
No 20
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=2.3e-16 Score=102.74 Aligned_cols=66 Identities=26% Similarity=0.461 Sum_probs=58.5
Q ss_pred cccCcccccccCCccCCCceEEecCCcccccCccccccCCccccCCCeEEEeCCeeecHHHHHHHhhhh
Q psy7480 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFA 179 (204)
Q Consensus 111 ~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~ 179 (204)
+|++ +|..|+++|.+.+.+|.+.++.||++||+|..|+++| .+..|+..++.+||+.||.+++...
T Consensus 3 ~~~~--~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~~~~yC~~cy~~~f~~~ 68 (72)
T 1x4k_A 3 SGSS--GCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPI-GTKSFIPKDNQNFCVPCYEKQHASG 68 (72)
T ss_dssp SCCC--CBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCC-CSSSEEEETTEEEEHHHHHHHTSSC
T ss_pred ccCC--CCccCCCcccCCceEEEECcCeecccCCcccccCCcc-CCCccCccCCeEECHHHHhHHhCCC
Confidence 5666 9999999998766799999999999999999999999 5568999999999999999886443
No 21
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=3.4e-16 Score=101.96 Aligned_cols=66 Identities=18% Similarity=0.355 Sum_probs=58.2
Q ss_pred cccCcccccccCCccCCCceEEecCCcccccCccccccCCccccCCCeEEEeCCeeecHHHHHHHhhhh
Q psy7480 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFA 179 (204)
Q Consensus 111 ~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~ 179 (204)
++++ +|..|+++|.+.+.+|.+.++.||++||+|..|+++| .+..|+..++.+||+.||.++|...
T Consensus 3 ~~~~--~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~~~~yC~~cy~~~f~~~ 68 (72)
T 1wyh_A 3 SGSS--GCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPL-GSRSFVPDKGAHYCVPCYENKFASG 68 (72)
T ss_dssp CCCC--BCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBT-TTSCEEEETTEEEEHHHHHHHTSCC
T ss_pred ccCC--CCccCCCccccCccEEEECccccCcccCeECCCCCcC-CCCccCCcCCeEECHHHHHHHccCc
Confidence 4566 9999999998656899999999999999999999999 5668999999999999999886443
No 22
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.63 E-value=8.8e-17 Score=107.23 Aligned_cols=73 Identities=21% Similarity=0.421 Sum_probs=55.7
Q ss_pred CCCccccccccccccceeEeecCccccccCccccCCCcccCcCCCeEEeeCCeecccccccccccCcccccccCCcc
Q psy7480 49 GGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVI 125 (204)
Q Consensus 49 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~~~~~C~~C~~~I 125 (204)
.+.++|.+|+++|...+.+.++++.||++||+|..|+++|.. ..|+.+++++||..||.++|++ +|.+|+...
T Consensus 5 ~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~--~~~~~~~~~~yC~~cy~~~f~~--~c~gcg~g~ 77 (81)
T 1a7i_A 5 GGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDS--TTVAIHDAEVYCKSCYGKKYGP--KGYGYGQGA 77 (81)
T ss_dssp ---CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECS--SCCEEETTEEECSHHHHHHCC------------
T ss_pred CCCCcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCC--CCeEeeCCEEECHHHHHHHhCC--cccccCCcc
Confidence 456789999999987667899999999999999999999974 4689999999999999999998 999998754
No 23
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.63 E-value=1.8e-16 Score=103.70 Aligned_cols=63 Identities=25% Similarity=0.497 Sum_probs=56.5
Q ss_pred cccCcccccccCCccCCCceEEecCCcccccCccccccCCccccCCCeEEEeCCeeecHHHHHHHhh
Q psy7480 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQV 177 (204)
Q Consensus 111 ~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~ 177 (204)
+|++ +|.+|+++|.+ .+|.++++.||++||+|..|+++|..+..|+..++++||..||.+++.
T Consensus 3 ~~~~--~C~~C~~~I~~--~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~ 65 (73)
T 1wig_A 3 SGSS--GCDSCEKYITG--RVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAART 65 (73)
T ss_dssp CSCC--SCSSSCCCCSS--CCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSS
T ss_pred cCcC--CcccCCCEecC--eeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhc
Confidence 4666 99999999986 788999999999999999999999547889999999999999988744
No 24
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.63 E-value=4.2e-16 Score=102.67 Aligned_cols=70 Identities=23% Similarity=0.536 Sum_probs=63.0
Q ss_pred CCCcccccccccccc---ceeEeecCccccccCccccCCCcccCcCCCeEEeeCCeecccccccccccCcccccccC
Q psy7480 49 GGLKECASCGKRITE---RFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACT 122 (204)
Q Consensus 49 ~~~~~C~~C~~~I~~---~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~~~~~C~~C~ 122 (204)
...++|.+|+++|.+ ..++.++++.||++||+|..|+.+|. +..|+.+++++||..||.++|++ +|+.++
T Consensus 3 ~~~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~--~~~f~~~~g~~yC~~cy~~~f~~--~C~~~s 75 (76)
T 1x68_A 3 SGSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLV--GKGFLTQNKEIFCQKCGSGMDTD--ISGPSS 75 (76)
T ss_dssp TCCCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCS--SSCEEEETTEEEETTTTCCCCCC--SSSSSC
T ss_pred ccCCCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCC--CCceEeECCEEECHHHhhhhhCC--cCCCCC
Confidence 356789999999996 35799999999999999999999997 46799999999999999999998 998875
No 25
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.62 E-value=2.6e-16 Score=100.84 Aligned_cols=62 Identities=29% Similarity=0.602 Sum_probs=55.7
Q ss_pred cccCcccccccCCccCCCceEEecCCcccccCccccccCCccccCCCeEEEeCCeeecHHHHHHHhh
Q psy7480 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQV 177 (204)
Q Consensus 111 ~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~ 177 (204)
++++ +|.+|+++|.+ .+|.+.++.||++||+|..|+++| .+..|+..+|.+||+.||.++|.
T Consensus 3 ~~~~--~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~g~~yC~~~y~~~f~ 64 (66)
T 1nyp_A 3 MGVP--ICGACRRPIEG--RVVNAMGKQWHVEHFVCAKCEKPF-LGHRHYERKGLAYCETHYNQLFG 64 (66)
T ss_dssp CCCC--EETTTTEECCS--CEECCTTSBEETTTCBCTTTCCBC-SSSCCEEETTEEECHHHHHHHCS
T ss_pred cCCC--CCcccCCEecc--eEEEECccccccCcCEECCCCCCC-CCCceEeECCcEECHHHHHHHhC
Confidence 4555 99999999984 689999999999999999999999 67789999999999999998753
No 26
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.62 E-value=4.8e-16 Score=101.26 Aligned_cols=63 Identities=24% Similarity=0.550 Sum_probs=56.9
Q ss_pred ccCcccccccCCccCCCceEEecCCcccccCccccccCCccccCCCeEEEeCCeeecHHHHHHHhh
Q psy7480 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQV 177 (204)
Q Consensus 112 ~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~ 177 (204)
+++ +|.+|+++|.+.+.+|.+.++.||++||+|..|+++| .+..|+..++.+||+.||.+++.
T Consensus 4 ~~~--~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 4 GSS--GCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQL-RGQHFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp CCC--CCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBC-TTSCEEESSSCEEEHHHHHHHHH
T ss_pred CCC--CCccCCCccCCCceEEEECCCeEcccCCcccccCCcC-CcCcCEeeCCeEECHHHHHHHHc
Confidence 445 9999999998756789999999999999999999999 78889999999999999998863
No 27
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.62 E-value=1.4e-16 Score=104.91 Aligned_cols=68 Identities=24% Similarity=0.459 Sum_probs=59.3
Q ss_pred ccccCcccccccCCccCC--CceEEecCCcccccCccccccCCccccCCCeEEEeCCeeecHHHHHHHhhhhc
Q psy7480 110 RLFGTTGYCAACTKVIPA--FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFAN 180 (204)
Q Consensus 110 ~~~~~~~~C~~C~~~I~~--~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~ 180 (204)
++|++ +|.+|+++|.+ .+.+|.+.++.||++||+|..|+++| .+..|+..++++||+.||.++|....
T Consensus 2 ~~~~~--~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L-~~~~f~~~~g~~yC~~cy~~~f~~~C 71 (76)
T 1x68_A 2 SSGSS--GCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSL-VGKGFLTQNKEIFCQKCGSGMDTDIS 71 (76)
T ss_dssp TTCCC--CCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBC-SSSCEEEETTEEEETTTTCCCCCCSS
T ss_pred CccCC--CCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcC-CCCceEeECCEEECHHHhhhhhCCcC
Confidence 35666 99999999986 55789999999999999999999999 67789999999999999988764433
No 28
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.62 E-value=4.2e-16 Score=101.33 Aligned_cols=65 Identities=25% Similarity=0.573 Sum_probs=57.2
Q ss_pred cccccCcccccccCCccCCCceEEecCCcccccCccccccCCccccCCCeEEEeCCeeecHHHHHHHh
Q psy7480 109 LRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQ 176 (204)
Q Consensus 109 ~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~ 176 (204)
...+++ +|.+|+++|.+.+.++.+.++.||++||+|..|+++|. +..|+..+|++||+.||.++|
T Consensus 7 ~~~~~~--~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~-~~~~~~~~g~~yC~~~y~~lf 71 (72)
T 3f6q_B 7 QGSASA--TCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFP-EGLFYEFEGRKYCEHDFQMLF 71 (72)
T ss_dssp CCCTTC--BCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCG-GGCCEEETTEEECHHHHHHHT
T ss_pred cCcCCc--cchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCC-CCCeEeECCeEeCHHHHHHhh
Confidence 345566 99999999998777889999999999999999999994 447999999999999999875
No 29
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.61 E-value=5.3e-16 Score=105.52 Aligned_cols=70 Identities=21% Similarity=0.455 Sum_probs=61.8
Q ss_pred CCCCCCccccccccccccceeEeecCccccccCccccCCCcccCcCCCeEEeeCCeecccccccccccCcccccc
Q psy7480 46 GASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAA 120 (204)
Q Consensus 46 ~~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~~~~~C~~ 120 (204)
......++|.+|+++|.+. .+.++++.||++||+|..|++.|.. ..|+.+++++||..||.++|++ +|+.
T Consensus 20 ~~~~~~~~C~~C~~~I~~~-~v~a~~~~~H~~CF~C~~C~~~L~~--~~f~~~~g~~yC~~cy~~~f~~--~c~s 89 (90)
T 2dar_A 20 PAGKRTPMCAHCNQVIRGP-FLVALGKSWHPEEFNCAHCKNTMAY--IGFVEEKGALYCELCYEKFFAS--GPSS 89 (90)
T ss_dssp CTTTCCCBBSSSCCBCCSC-EEEETTEEECTTTCBCSSSCCBCSS--SCBEESSSCEECHHHHHHHTSC--CCCC
T ss_pred CCCCCCCCCccCCCEecce-EEEECCccccccCCccCCCCCCCCC--CEeEeECCEEECHHHHHHHcCC--CCCC
Confidence 3456778999999999765 6889999999999999999999983 5689999999999999999998 8863
No 30
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.61 E-value=5.6e-16 Score=105.38 Aligned_cols=74 Identities=22% Similarity=0.320 Sum_probs=62.4
Q ss_pred eecccccccccccCcccccccCCccCCCceEEecCCcccccCccccccCCccccCCCeEEEeCCeeecHHHHHHHhhhh
Q psy7480 101 LILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFA 179 (204)
Q Consensus 101 ~~~C~~cy~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~ 179 (204)
....+..+...+.+ +|..|+++|.+ ++|.+.++.||++||+|..|+++| .+..|+..++++||+.||.++|...
T Consensus 13 ~~~~~~~~~~~~~~--~C~~C~~~I~~--~~v~a~~~~~H~~CF~C~~C~~~L-~~~~f~~~~g~~yC~~cy~~~f~~~ 86 (90)
T 2dar_A 13 VQRAEHIPAGKRTP--MCAHCNQVIRG--PFLVALGKSWHPEEFNCAHCKNTM-AYIGFVEEKGALYCELCYEKFFASG 86 (90)
T ss_dssp CBCCEEECTTTCCC--BBSSSCCBCCS--CEEEETTEEECTTTCBCSSSCCBC-SSSCBEESSSCEECHHHHHHHTSCC
T ss_pred hhhcccCCCCCCCC--CCccCCCEecc--eEEEECCccccccCCccCCCCCCC-CCCEeEeECCEEECHHHHHHHcCCC
Confidence 33444556667777 99999999964 788999999999999999999999 6678999999999999999986443
No 31
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.61 E-value=7.3e-16 Score=104.61 Aligned_cols=68 Identities=19% Similarity=0.446 Sum_probs=60.4
Q ss_pred CCCCCccccccccccccceeEeecCccccccCccccCCCcccCcCCCeEEeeCCeecccccccccccCccccc
Q psy7480 47 ASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCA 119 (204)
Q Consensus 47 ~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~~~~~C~ 119 (204)
......+|.+|+++|.+. ++.++++.||++||+|..|++.|.. ..|+.+++++||..||.++|++ ++.
T Consensus 21 ~~~~~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~~--~~~~~~~g~~yC~~~y~~~f~p--~~~ 88 (89)
T 1x64_A 21 SAQRMPLCDKCGSGIVGA-VVKARDKYRHPECFVCADCNLNLKQ--KGYFFVEGELYCETHARARTSG--PSS 88 (89)
T ss_dssp CCCSCCBCTTTCCBCCSC-CEESSSCEECTTTCCCSSSCCCTTT--SCCEEETTEEECHHHHHHHSSS--CCC
T ss_pred CCCcCCCcccCCCEeccc-EEEECCceECccCCEecCCCCCCCC--CCeEeECCEEECHHHHHHHhCC--CCC
Confidence 445678999999999985 6889999999999999999999973 4688999999999999999998 664
No 32
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.61 E-value=7e-16 Score=110.87 Aligned_cols=67 Identities=49% Similarity=1.173 Sum_probs=59.4
Q ss_pred CCCCCccccccccccccceeEeecCccccccCccccCCCcccCcCCCeEEeeCCeeccccccccccc
Q psy7480 47 ASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113 (204)
Q Consensus 47 ~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~ 113 (204)
.....++|.+|+++|.+.+++.++++.||+.||+|..|+..|.+.+..|+.++|++||..||.++|+
T Consensus 57 ~~~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 57 GGLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp SCSSCSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred cCccCCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence 3456789999999999987799999999999999999999997334578999999999999999885
No 33
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=4.5e-16 Score=101.42 Aligned_cols=59 Identities=27% Similarity=0.569 Sum_probs=54.3
Q ss_pred cccccCCccCC--CceEEecCCcccccCccccccCCccccCCCeEEEeCCeeecHHHHHHHh
Q psy7480 117 YCAACTKVIPA--FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQ 176 (204)
Q Consensus 117 ~C~~C~~~I~~--~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~ 176 (204)
+|.+|+++|.+ .+.+|.+.++.||++||+|..|+++| .+..|+..++++||+.||.+++
T Consensus 7 ~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L-~~~~f~~~~g~~yC~~c~~~~~ 67 (72)
T 1x4l_A 7 GCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSL-VGRGFLTERDDILCPDCGKDIS 67 (72)
T ss_dssp SBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBC-TTSCCEECSSSEECHHHHHTCC
T ss_pred CCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcC-CCCccEeECCEEEChhHcCccc
Confidence 99999999986 45789999999999999999999999 6788999999999999998874
No 34
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=8.2e-16 Score=101.24 Aligned_cols=68 Identities=26% Similarity=0.491 Sum_probs=60.8
Q ss_pred CCCccccccccccccceeEeecCccccccCccccCCCcccCcCCCeEEeeCCeeccc-ccccccccCcccccc
Q psy7480 49 GGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCK-RDYLRLFGTTGYCAA 120 (204)
Q Consensus 49 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~~~g~~~C~-~cy~~~~~~~~~C~~ 120 (204)
...++|.+|+++|...+.+.++++.||++||+|..|+.+|.. ..|+.+++++||. .||.++|++ +|.+
T Consensus 7 ~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~--~~~~~~~g~~yC~~~cy~~~f~~--kc~g 75 (76)
T 2cu8_A 7 GMASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTP--GGHAEHDGKPFCHKPCYATLFGS--GPSS 75 (76)
T ss_dssp CCCCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCT--TSCEEETTEEECTTTHHHHHSCS--SCSC
T ss_pred CCCCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCC--CceEeECCEEecchHHHHHhccc--ccCC
Confidence 456899999999996667889999999999999999999983 5689999999999 799999998 8863
No 35
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=1.1e-15 Score=98.97 Aligned_cols=63 Identities=24% Similarity=0.477 Sum_probs=55.8
Q ss_pred cccCcccccccCCccCCCceEEecCCcccccCccccccCCccccCCCeEEEeCCeeecHHHHHHHhhh
Q psy7480 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVF 178 (204)
Q Consensus 111 ~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~ 178 (204)
.+++ +|..|+++|.+ ..|.+.++.||++||+|..|+++| .+..|+..++++||+.||.++|..
T Consensus 3 ~~~~--~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~~~~yC~~cy~~~f~~ 65 (70)
T 2d8z_A 3 SGSS--GCVQCKKPITT--GGVTYREQPWHKECFVCTACRKQL-SGQRFTARDDFAYCLNCFCDLYAS 65 (70)
T ss_dssp CCCC--BCSSSCCBCCS--SEEESSSSEEETTTSBCSSSCCBC-TTSCCEESSSSEECHHHHHHHTCC
T ss_pred CCCC--CCcccCCeecc--ceEEECccccCCCCCccCCCCCcC-CcCceEeeCCeEECHHHHHHHhcc
Confidence 3455 99999999976 568999999999999999999999 677899999999999999988643
No 36
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=1.1e-15 Score=98.66 Aligned_cols=60 Identities=23% Similarity=0.591 Sum_probs=54.4
Q ss_pred cccccCCccCCCceEEecCCcccccCccccccCCccccCCCeEEEeCCeeecHHHHHHHhhhh
Q psy7480 117 YCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFA 179 (204)
Q Consensus 117 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~ 179 (204)
+|..|+++|.+ ..|.+.++.||++||+|..|+++| .+..|++.++++||+.||.++|...
T Consensus 7 ~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~~~~yC~~cy~~~f~~~ 66 (69)
T 2cur_A 7 GCVKCNKAITS--GGITYQDQPWHADCFVCVTCSKKL-AGQRFTAVEDQYYCVDCYKNFVSGP 66 (69)
T ss_dssp CCSSSCCCCCT--TCEEETTEEECTTTTBCTTTCCBC-TTSCEEECSSCEEEHHHHHHHHTCS
T ss_pred CCcccCCEeCc--ceEEECccccccCcCEECCCCCCC-CCCccEeECCEEECHHHhHHHhcCC
Confidence 99999999976 578899999999999999999999 6778999999999999999886543
No 37
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=7.4e-16 Score=99.53 Aligned_cols=67 Identities=25% Similarity=0.538 Sum_probs=60.4
Q ss_pred CCCccccccccccccceeEeecCccccccCccccCCCcccCcCCCeEEeeCCeecccccccccccCcccccc
Q psy7480 49 GGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAA 120 (204)
Q Consensus 49 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~~~~~C~~ 120 (204)
.+.++|.+|+++|.+. .+.++++.||++||+|..|+.+|. +..|+.+++++||..||.++|++ +|++
T Consensus 3 ~~~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~--~~~~~~~~~~~yC~~cy~~~f~~--~C~g 69 (69)
T 2cur_A 3 SGSSGCVKCNKAITSG-GITYQDQPWHADCFVCVTCSKKLA--GQRFTAVEDQYYCVDCYKNFVSG--PSSG 69 (69)
T ss_dssp CCCCCCSSSCCCCCTT-CEEETTEEECTTTTBCTTTCCBCT--TSCEEECSSCEEEHHHHHHHHTC--SCCC
T ss_pred CCcCCCcccCCEeCcc-eEEECccccccCcCEECCCCCCCC--CCccEeECCEEECHHHhHHHhcC--CCCC
Confidence 3567899999999976 688999999999999999999997 46689999999999999999998 8864
No 38
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.58 E-value=1.5e-15 Score=109.22 Aligned_cols=73 Identities=52% Similarity=1.047 Sum_probs=63.3
Q ss_pred ccccccCcccccccCCccCCCceEEecCCcccccCccccccCCccccCCCeEEEeCCeeecHHHHHHHhhhhc
Q psy7480 108 YLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFAN 180 (204)
Q Consensus 108 y~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~ 180 (204)
|.++|++.++|..|+++|.+.+.+|.+.++.||++||+|..|+++|..+..|+..++.+||..||.+++....
T Consensus 1 Y~r~fg~~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~~~ 73 (123)
T 2l3k_A 1 YLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKING 73 (123)
T ss_dssp CCSSSSSSCCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHHHT
T ss_pred ChhhhCCCCcccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhcccc
Confidence 5567775448999999998766888999999999999999999999667789999999999999999875444
No 39
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.58 E-value=1.2e-15 Score=97.46 Aligned_cols=58 Identities=22% Similarity=0.548 Sum_probs=53.1
Q ss_pred cccccCCccCCCceEEecCCcccc--cCccccccCCccccCCCeEEEeCCeeec-HHHHHHH
Q psy7480 117 YCAACTKVIPAFEMVMRAKNNVYH--LECFACQQCNHRFCVGDRFYLCDNKILC-EYDYEER 175 (204)
Q Consensus 117 ~C~~C~~~I~~~~~~~~~~~~~~H--~~Cf~C~~C~~~l~~~~~~~~~~~~~~C-~~c~~~~ 175 (204)
+|.+|+++|.+.+..|.+.++.|| ++||+|..|+++| .+..|+..+|++|| ..||.++
T Consensus 4 ~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L-~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCL-IGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp ECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBC-TTSCCEEETTEEESSHHHHHTT
T ss_pred CCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcC-CCCceEEECCEEecCHHHhhhh
Confidence 899999999864579999999999 9999999999999 77889999999999 9998754
No 40
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=1e-15 Score=100.96 Aligned_cols=60 Identities=27% Similarity=0.661 Sum_probs=54.5
Q ss_pred cccccCCccCCCceEEecCCcccccCccccccCCccccCCCeEEEeCCeeecHHHHHHHhh
Q psy7480 117 YCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQV 177 (204)
Q Consensus 117 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~ 177 (204)
+|.+|+++|.+.+.++.+.++.||++||+|..|+++| .+..|+..+|.+||+.||.++|.
T Consensus 13 ~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~g~~yC~~~y~~~f~ 72 (77)
T 1g47_A 13 TCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQF-PEGLFYEFEGRKYCEHDFQMLFA 72 (77)
T ss_dssp BCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCC-GGGCSEEETTEEECHHHHHHHCC
T ss_pred CchhcCCccCCCceEEEeCccEeccccCeECCCCCCC-CCCCeEeECCeEeCHHHHHHHhh
Confidence 9999999998666788999999999999999999999 44479999999999999998854
No 41
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=1.4e-15 Score=98.98 Aligned_cols=68 Identities=24% Similarity=0.525 Sum_probs=60.8
Q ss_pred CCCccccccccccccc-eeEeecCccccccCccccCCCcccCcCCCeEEeeCCeecccccccccccCcccccc
Q psy7480 49 GGLKECASCGKRITER-FLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAA 120 (204)
Q Consensus 49 ~~~~~C~~C~~~I~~~-~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~~~~~C~~ 120 (204)
...++|.+|+++|... .++.++++.||++||+|..|+.+|.. ..|+.+++++||..||.++|++ +|+.
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~--~~~~~~~~~~yC~~cy~~~f~~--~C~~ 71 (72)
T 1wyh_A 3 SGSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGS--RSFVPDKGAHYCVPCYENKFAS--GPSS 71 (72)
T ss_dssp CCCCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTT--SCEEEETTEEEEHHHHHHHTSC--CCCC
T ss_pred ccCCCCccCCCccccCccEEEECccccCcccCeECCCCCcCCC--CccCCcCCeEECHHHHHHHccC--cCCC
Confidence 3567899999999974 68899999999999999999999983 5689999999999999999998 8863
No 42
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.57 E-value=2e-15 Score=97.73 Aligned_cols=59 Identities=27% Similarity=0.527 Sum_probs=53.4
Q ss_pred cccccCCccCCCceEEecCCcccccCccccccCCccccCCCeEEEeCCeeecHHHHHHHhhh
Q psy7480 117 YCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVF 178 (204)
Q Consensus 117 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~ 178 (204)
+|..|+++|.+ .+|.+.++.||++||+|..|+++| .+..|+..++++||+.||.+++..
T Consensus 7 ~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~~L-~~~~f~~~~g~~yC~~c~~~~~~~ 65 (70)
T 2d8x_A 7 GCHQCGEFIIG--RVIKAMNNSWHPECFRCDLCQEVL-ADIGFVKNAGRHLCRPCHNREKAS 65 (70)
T ss_dssp BCSSSCCBCCS--CCEEETTEEECTTTSBCSSSCCBC-SSSCCEEETTEEECHHHHHHHHCC
T ss_pred cCccCCCEecc--eEEEECcccccccCCEeCCCCCcC-CCCccEeECCeEECHHHhhhhcCC
Confidence 89999999975 688999999999999999999999 555799999999999999988643
No 43
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.57 E-value=1.2e-15 Score=98.77 Aligned_cols=67 Identities=22% Similarity=0.567 Sum_probs=60.1
Q ss_pred CCCccccccccccccceeEeecCccccccCccccCCCcccCcCCCeEEeeCCeecccccccccccCcccccc
Q psy7480 49 GGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAA 120 (204)
Q Consensus 49 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~~~~~C~~ 120 (204)
.+.++|.+|+++|.+. .+.++++.||++||+|..|+++|. +..|+.+++++||..||.++|++ +|+.
T Consensus 3 ~~~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~--~~~~~~~~~~~yC~~cy~~~f~~--~c~~ 69 (70)
T 2d8z_A 3 SGSSGCVQCKKPITTG-GVTYREQPWHKECFVCTACRKQLS--GQRFTARDDFAYCLNCFCDLYAS--GPSS 69 (70)
T ss_dssp CCCCBCSSSCCBCCSS-EEESSSSEEETTTSBCSSSCCBCT--TSCCEESSSSEECHHHHHHHTCC--CCTT
T ss_pred CCCCCCcccCCeeccc-eEEECccccCCCCCccCCCCCcCC--cCceEeeCCeEECHHHHHHHhcc--ccCC
Confidence 4567899999999976 588999999999999999999997 35788999999999999999998 8863
No 44
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.57 E-value=6.3e-16 Score=102.58 Aligned_cols=67 Identities=21% Similarity=0.425 Sum_probs=59.6
Q ss_pred CCCCccccccccccccceeEeecCccccccCccccCCCcccCcCCCeEEeeCCeecccccccccccCccccc
Q psy7480 48 SGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCA 119 (204)
Q Consensus 48 ~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~~~~~C~ 119 (204)
....++|.+|+++|.+. ++.++++.||++||+|..|++.|.. ..|+.+++++||..||.++|++ ++.
T Consensus 12 ~~~~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~~--~~~~~~~g~~yC~~cy~~~~~p--~g~ 78 (79)
T 1x62_A 12 AQKLPMCDKCGTGIVGV-FVKLRDRHRHPECYVCTDCGTNLKQ--KGHFFVEDQIYCEKHARERVSG--PSS 78 (79)
T ss_dssp CCCCCCCSSSCCCCCSS-CEECSSCEECTTTTSCSSSCCCHHH--HCCEESSSCEECHHHHHHHHSS--CCC
T ss_pred CCCCCccccCCCCccCc-EEEECcceeCcCcCeeCCCCCCCCC--CCeEeECCEEECHHHHHHHhCC--CCC
Confidence 35578999999999986 7899999999999999999999973 4588999999999999999998 653
No 45
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.57 E-value=1.9e-15 Score=98.33 Aligned_cols=67 Identities=24% Similarity=0.486 Sum_probs=60.5
Q ss_pred CCccccccccccccc-eeEeecCccccccCccccCCCcccCcCCCeEEeeCCeecccccccccccCcccccc
Q psy7480 50 GLKECASCGKRITER-FLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAA 120 (204)
Q Consensus 50 ~~~~C~~C~~~I~~~-~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~~~~~C~~ 120 (204)
..++|.+|+++|.+. .++.++++.||++||+|..|+++|.. ..|+.+++++||..||.++|++ +|+.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~--~~~~~~~~~~yC~~cy~~~f~~--~C~~ 71 (72)
T 1x4k_A 4 GSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGT--KSFIPKDNQNFCVPCYEKQHAS--GPSS 71 (72)
T ss_dssp CCCCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCS--SSEEEETTEEEEHHHHHHHTSS--CCCC
T ss_pred cCCCCccCCCcccCCceEEEECcCeecccCCcccccCCccCC--CccCccCCeEECHHHHhHHhCC--CCCC
Confidence 467899999999975 57999999999999999999999984 5689999999999999999998 8863
No 46
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=2.1e-15 Score=98.19 Aligned_cols=64 Identities=27% Similarity=0.554 Sum_probs=57.8
Q ss_pred CCCcccccccccccc---ceeEeecCccccccCccccCCCcccCcCCCeEEeeCCeecccccccccccC
Q psy7480 49 GGLKECASCGKRITE---RFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGT 114 (204)
Q Consensus 49 ~~~~~C~~C~~~I~~---~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~~ 114 (204)
.+.++|.+|+++|.+ ..++.++++.||++||+|..|+.+|. +..|+.+++++||..||.++|++
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~--~~~f~~~~g~~yC~~c~~~~~~p 69 (72)
T 1x4l_A 3 SGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLV--GRGFLTERDDILCPDCGKDISGP 69 (72)
T ss_dssp SCSCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCT--TSCCEECSSSEECHHHHHTCCCS
T ss_pred CCCCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCC--CCccEeECCEEEChhHcCcccCC
Confidence 457899999999996 36789999999999999999999997 46688999999999999999997
No 47
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=1.8e-15 Score=103.01 Aligned_cols=69 Identities=23% Similarity=0.424 Sum_probs=61.7
Q ss_pred CCCccccccccccccceeEeecCccccccCccccCCCcccCcCCCeEEeeCCeecccccccccccCccccccc
Q psy7480 49 GGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAAC 121 (204)
Q Consensus 49 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~~~~~C~~C 121 (204)
....+|.+|+++|.+.+.+.++++.||+.||+|..|+..|.. ..|+.+++++||..||.++|++ +|..+
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~--~~~~~~~g~~yC~~~y~~~f~~--kc~~~ 81 (91)
T 2d8y_A 13 PARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSL--GTYASLHGRIYCKPHFNQLFKS--KGNYD 81 (91)
T ss_dssp SSSCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCT--TTCCCSSSCCCCHHHHHHHSCC--CSCCC
T ss_pred CCCCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCC--CCcEeECCEEECHHHHHHHhCC--CcCcc
Confidence 456799999999998767899999999999999999999984 4588999999999999999998 88743
No 48
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.55 E-value=4.1e-15 Score=99.34 Aligned_cols=66 Identities=20% Similarity=0.386 Sum_probs=57.1
Q ss_pred CCCCCccccccccccccceeEeecCccccccCccccCCCcccCcCCCeEE--eeCCeecccccccccccC
Q psy7480 47 ASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLY--QKANLILCKRDYLRLFGT 114 (204)
Q Consensus 47 ~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~--~~~g~~~C~~cy~~~~~~ 114 (204)
......+|.+|+++|+..+.+.++++.||.+||+|..|+..|.. ..|+ .+++++||+.||.++|.+
T Consensus 11 ~~~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~--~~~~~~~~~g~~yC~~~y~~~~~~ 78 (82)
T 2co8_A 11 EAGAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWP--GGYEQHPGDGHFYCLQHLPQTDSG 78 (82)
T ss_dssp CCCSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCT--TSEECCTTTCCCEETTTCCCCCCC
T ss_pred CCCCCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCC--CceeEeCcCCEEEChHHHHhhhcC
Confidence 44567899999999987767889999999999999999999984 4465 479999999999999875
No 49
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=4.2e-15 Score=99.19 Aligned_cols=69 Identities=23% Similarity=0.429 Sum_probs=60.8
Q ss_pred CCCCccccccccccc-cceeEeecCccccccCccccCCCcccCcCCCeEEeeCCeecccccccccccCcccccc
Q psy7480 48 SGGLKECASCGKRIT-ERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAA 120 (204)
Q Consensus 48 ~~~~~~C~~C~~~I~-~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~~~~~C~~ 120 (204)
....++|.+|+++|. +..++.++++.||+.||+|..|+.+|. +..|+.+++++||..||.++|++ +|++
T Consensus 12 ~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~--~~~f~~~~~~~~C~~c~~~~~~~--~C~~ 81 (82)
T 2ehe_A 12 NTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLA--DEPFTCQDSELLCNDCYCSAFSS--GPSS 81 (82)
T ss_dssp CCCSCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCS--SCCEEEETTEEEETTTSSCCGGG--SSCC
T ss_pred cccCCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccC--CCccEeeCCEEECHHHHhhhcCC--CCCC
Confidence 345678999999999 346788999999999999999999997 35789999999999999999998 8863
No 50
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.54 E-value=2.3e-15 Score=99.21 Aligned_cols=67 Identities=19% Similarity=0.462 Sum_probs=58.3
Q ss_pred CCCcccccccccccc-ceeEeecCccccccCccccCCCcccCcCCCeEEeeCCeecccccccccccCccccc
Q psy7480 49 GGLKECASCGKRITE-RFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCA 119 (204)
Q Consensus 49 ~~~~~C~~C~~~I~~-~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~~~~~C~ 119 (204)
...++|.+|+++|.. +.++.++++.||+.||+|..|+.+|.. ..|+.++|++||..||.++|++ +|+
T Consensus 9 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~--~~~~~~~g~~yC~~~y~~~f~~--~C~ 76 (77)
T 1g47_A 9 LASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPE--GLFYEFEGRKYCEHDFQMLFAP--CWI 76 (77)
T ss_dssp CCCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGG--GCSEEETTEEECHHHHHHHCCC--C--
T ss_pred CCCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCC--CCeEeECCeEeCHHHHHHHhhc--ccC
Confidence 456789999999985 456889999999999999999999984 4589999999999999999998 885
No 51
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.54 E-value=2.6e-15 Score=96.10 Aligned_cols=63 Identities=29% Similarity=0.707 Sum_probs=56.8
Q ss_pred CCCccccccccccccceeEeecCccccccCccccCCCcccCcCCCeEEeeCCeecccccccccccC
Q psy7480 49 GGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGT 114 (204)
Q Consensus 49 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~~ 114 (204)
...++|.+|+++|.+. .+.++++.||++||+|..|+.+|. +..|+.++|++||..||.++|++
T Consensus 3 ~~~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~--~~~~~~~~g~~yC~~~y~~~f~~ 65 (66)
T 1nyp_A 3 MGVPICGACRRPIEGR-VVNAMGKQWHVEHFVCAKCEKPFL--GHRHYERKGLAYCETHYNQLFGD 65 (66)
T ss_dssp CCCCEETTTTEECCSC-EECCTTSBEETTTCBCTTTCCBCS--SSCCEEETTEEECHHHHHHHCSC
T ss_pred cCCCCCcccCCEecce-EEEECccccccCcCEECCCCCCCC--CCceEeECCcEECHHHHHHHhCC
Confidence 3467899999999955 689999999999999999999997 35789999999999999999986
No 52
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.54 E-value=3.7e-15 Score=96.99 Aligned_cols=68 Identities=24% Similarity=0.559 Sum_probs=59.8
Q ss_pred CCCccccccccccccc-eeEeecCccccccCccccCCCcccCcCCCeEEeeCCeecccccccccccCccccccc
Q psy7480 49 GGLKECASCGKRITER-FLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAAC 121 (204)
Q Consensus 49 ~~~~~C~~C~~~I~~~-~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~~~~~C~~C 121 (204)
.+.++|.+|+++|.+. .++.++++.||+.||+|..|+.+|. +..|+.+++++||..||.++|. +|..+
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~--~~~~~~~~~~~yC~~cy~~~~~---~~~~~ 71 (72)
T 1x61_A 3 SGSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLR--GQHFYAVERRAYCEGCYVATLE---SGPSS 71 (72)
T ss_dssp SCCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCT--TSCEEESSSCEEEHHHHHHHHH---TCSSC
T ss_pred CCCCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCC--cCcCEeeCCeEECHHHHHHHHc---cCCCC
Confidence 4568999999999974 5789999999999999999999996 4679999999999999999987 56654
No 53
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=2.6e-15 Score=99.62 Aligned_cols=59 Identities=22% Similarity=0.585 Sum_probs=53.7
Q ss_pred cccccCCccCCCceEEecCCcccccCccccccCCccccCCCeEEEeCCeeecHHHHHHHhhh
Q psy7480 117 YCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVF 178 (204)
Q Consensus 117 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~ 178 (204)
+|..|+++|.+ .+|.+.++.||++||+|..|+++| .+..|+..++++||+.||.++|..
T Consensus 17 ~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~g~~yC~~cy~~~~~p 75 (79)
T 1x62_A 17 MCDKCGTGIVG--VFVKLRDRHRHPECYVCTDCGTNL-KQKGHFFVEDQIYCEKHARERVSG 75 (79)
T ss_dssp CCSSSCCCCCS--SCEECSSCEECTTTTSCSSSCCCH-HHHCCEESSSCEECHHHHHHHHSS
T ss_pred ccccCCCCccC--cEEEECcceeCcCcCeeCCCCCCC-CCCCeEeECCEEECHHHHHHHhCC
Confidence 89999999986 588999999999999999999999 566799999999999999988643
No 54
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=7.4e-15 Score=99.58 Aligned_cols=58 Identities=26% Similarity=0.680 Sum_probs=53.2
Q ss_pred cccccCCccCCCceEEecCCcccccCccccccCCccccCCCeEEEeCCeeecHHHHHHHhh
Q psy7480 117 YCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQV 177 (204)
Q Consensus 117 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~ 177 (204)
+|..|+++|.+ .+|.+.++.||++||+|..|+++| .+..|+..++.+||+.||.++|.
T Consensus 27 ~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~g~~yC~~~y~~~f~ 84 (89)
T 1x64_A 27 LCDKCGSGIVG--AVVKARDKYRHPECFVCADCNLNL-KQKGYFFVEGELYCETHARARTS 84 (89)
T ss_dssp BCTTTCCBCCS--CCEESSSCEECTTTCCCSSSCCCT-TTSCCEEETTEEECHHHHHHHSS
T ss_pred CcccCCCEecc--cEEEECCceECccCCEecCCCCCC-CCCCeEeECCEEECHHHHHHHhC
Confidence 89999999986 678999999999999999999999 56679999999999999998854
No 55
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.52 E-value=7.2e-15 Score=97.46 Aligned_cols=57 Identities=23% Similarity=0.497 Sum_probs=50.7
Q ss_pred cccccCCccCCCceEEecCCcccccCccccccCCccccCCCeEEEeCCeeecHHHHHHHhh
Q psy7480 117 YCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQV 177 (204)
Q Consensus 117 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~ 177 (204)
+|.+|+++|.+ .+|.+.++.||++||+|..|+++| .+.. +..+|.+||+.||.++|.
T Consensus 17 ~C~~C~~~I~~--~~v~a~~~~~H~~CF~C~~C~~~L-~~~~-f~~~g~~yC~~cy~~~f~ 73 (79)
T 2cor_A 17 ICQKCHAIIDE--QPLIFKNDPYHPDHFNCANCGKEL-TADA-RELKGELYCLPCHDKMGV 73 (79)
T ss_dssp BCTTTCCBCCS--CCCCCSSSCCCTTTSBCSSSCCBC-CTTC-EEETTEEECHHHHHTTSC
T ss_pred CCccCCCEecc--eEEEECcceeCCCCCEeCCCCCcc-CCCC-EeECCEEeCHHHHHHhCC
Confidence 89999999984 778999999999999999999999 4544 489999999999998753
No 56
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.52 E-value=8e-15 Score=94.89 Aligned_cols=63 Identities=29% Similarity=0.632 Sum_probs=57.0
Q ss_pred CCCccccccccccccceeEeecCccccccCccccCCCcccCcCCCeEEeeCCeecccccccccccC
Q psy7480 49 GGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGT 114 (204)
Q Consensus 49 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~~ 114 (204)
.+.++|.+|+++|.+. ++.++++.||++||+|..|+.+|.. ..|+.+++++||..||.++|++
T Consensus 3 ~~~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~~--~~f~~~~g~~yC~~c~~~~~~~ 65 (70)
T 2d8x_A 3 SGSSGCHQCGEFIIGR-VIKAMNNSWHPECFRCDLCQEVLAD--IGFVKNAGRHLCRPCHNREKAS 65 (70)
T ss_dssp CCSSBCSSSCCBCCSC-CEEETTEEECTTTSBCSSSCCBCSS--SCCEEETTEEECHHHHHHHHCC
T ss_pred CCCCcCccCCCEecce-EEEECcccccccCCEeCCCCCcCCC--CccEeECCeEECHHHhhhhcCC
Confidence 4578999999999975 6899999999999999999999984 4688899999999999999986
No 57
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.52 E-value=7.3e-15 Score=97.68 Aligned_cols=61 Identities=28% Similarity=0.560 Sum_probs=53.6
Q ss_pred ccccccCCccCCCceEEecCCcccccCccccccCCccccCCCeEEEeCCeeecHHHHHHHhhhh
Q psy7480 116 GYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFA 179 (204)
Q Consensus 116 ~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~ 179 (204)
++|..|+++|... .+|.++++.||++||+|..|+++| .+ .|+..++++||+.||.++|...
T Consensus 16 ~~C~~C~~~I~~~-~~v~a~~~~wH~~CF~C~~C~~~L-~~-~~~~~~g~~yC~~~y~~~fg~~ 76 (80)
T 2dj7_A 16 SHCAGCKEEIKHG-QSLLALDKQWHVSCFKCQTCSVIL-TG-EYISKDGVPYCESDYHAQFGSG 76 (80)
T ss_dssp SCCTTTCCCCSSS-CCEEETTEEECTTTCBCSSSCCBC-SS-CCEEETTEEECTTHHHHHTTCC
T ss_pred CCCcCcCCeeCCC-eEEEECCcccccccCCcCcCCCCc-CC-CeEEECCEEECHHHHHHHcCCC
Confidence 3899999999753 567899999999999999999999 45 6999999999999999986544
No 58
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.52 E-value=9.5e-15 Score=96.08 Aligned_cols=65 Identities=17% Similarity=0.319 Sum_probs=55.8
Q ss_pred cccCcccccccCCccCCCceEEecCCcccccCccccccCCccccCCCeEEEeCCeeecH-HHHHHHhhhh
Q psy7480 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCE-YDYEERQVFA 179 (204)
Q Consensus 111 ~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~-~c~~~~~~~~ 179 (204)
.+.+ +|.+|+++|.+. ..|.+.++.||++||+|..|+++| .+..|+..++++||+ .||.++|...
T Consensus 7 ~~~~--~C~~C~~~I~~~-~~v~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~g~~yC~~~cy~~~f~~k 72 (76)
T 2cu8_A 7 GMAS--KCPKCDKTVYFA-EKVSSLGKDWHKFCLKCERCSKTL-TPGGHAEHDGKPFCHKPCYATLFGSG 72 (76)
T ss_dssp CCCC--BCTTTCCBCCTT-TEEEETTEEEETTTCBCSSSCCBC-CTTSCEEETTEEECTTTHHHHHSCSS
T ss_pred CCCC--CCcCCCCEeECC-eEEEECCeEeeCCCCCCCCCCCcc-CCCceEeECCEEecchHHHHHhcccc
Confidence 3444 999999999853 467899999999999999999999 677899999999999 7999886443
No 59
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.50 E-value=7.8e-15 Score=97.40 Aligned_cols=67 Identities=22% Similarity=0.564 Sum_probs=60.1
Q ss_pred CCCccccccccccccceeEeecCccccccCccccCCCcccCcCCCeEEeeCCeecccccccccccCcccccc
Q psy7480 49 GGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAA 120 (204)
Q Consensus 49 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~~~~~C~~ 120 (204)
...++|.+|+++|.+. .+.++++.||+.||+|..|+.+|.. ..|+.+++++||..||.++|++ +|++
T Consensus 13 ~~~~~C~~C~~~I~~~-~v~a~~~~~H~~CF~C~~C~~~L~~--~~~~~~~~~~yC~~~y~~~f~~--~C~~ 79 (80)
T 1x3h_A 13 MFSPKCGGCNRPVLEN-YLSAMDTVWHPECFVCGDCFTSFST--GSFFELDGRPFCELHYHHRRGS--GPSS 79 (80)
T ss_dssp CCSCBCTTTCCBCCSS-CEEETTEEECTTTCBCSSSCCBSCS--SCCEESSSCEECHHHHHHHHSS--SCCC
T ss_pred hcCCccccCCCeecce-eEEECCCeEecCcCChhhCCCCCCC--CcEEeECCEEECHHHHHHHcCC--CCCC
Confidence 4467899999999986 6899999999999999999999974 4689999999999999999998 8864
No 60
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.50 E-value=1.5e-14 Score=95.88 Aligned_cols=64 Identities=19% Similarity=0.238 Sum_probs=56.4
Q ss_pred CCCCCccccccccccccceeEeecCccccccCccccCCCcccCcCCCeEEeeCCeecccccccccccC
Q psy7480 47 ASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGT 114 (204)
Q Consensus 47 ~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~~ 114 (204)
...+.++|.+|+++|.+. .+.++++.||++||+|..|+.+|.. . ++.++|++||..||.++|++
T Consensus 11 ~~~~~~~C~~C~~~I~~~-~v~a~~~~~H~~CF~C~~C~~~L~~--~-~f~~~g~~yC~~cy~~~f~p 74 (79)
T 2cor_A 11 RGLGKYICQKCHAIIDEQ-PLIFKNDPYHPDHFNCANCGKELTA--D-ARELKGELYCLPCHDKMGVS 74 (79)
T ss_dssp CCCCCCBCTTTCCBCCSC-CCCCSSSCCCTTTSBCSSSCCBCCT--T-CEEETTEEECHHHHHTTSCC
T ss_pred hccCCCCCccCCCEecce-EEEECcceeCCCCCEeCCCCCccCC--C-CEeECCEEeCHHHHHHhCCC
Confidence 344578999999999965 5889999999999999999999983 3 45999999999999999997
No 61
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.50 E-value=1.3e-14 Score=95.35 Aligned_cols=67 Identities=15% Similarity=0.298 Sum_probs=57.0
Q ss_pred ccccccCCccCCCceEEecCCcccccCccccccCCccccCCCeEEEeCCeeecH-HHHHHHhhhhcccCC
Q psy7480 116 GYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCE-YDYEERQVFANIAYN 184 (204)
Q Consensus 116 ~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~-~c~~~~~~~~~~~~~ 184 (204)
++|.+|+++|... ..|.+.++.||++||+|..|+++| .+..|+..+|.+||+ .||.++|........
T Consensus 1 p~C~~C~~~I~~~-~~v~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~g~~yC~~~cy~~~f~~~C~~C~ 68 (76)
T 1iml_A 1 PKCPKCDKEVYFA-ERVTSLGKDWHRPCLKCEKCGKTL-TSGGHAEHEGKPYCNHPCYSAMFGPKGFGRG 68 (76)
T ss_dssp CBCTTTSSBCCGG-GEEEETTEEEETTTCBCTTTCCBC-CTTTEEEETTEEEETTTHHHHHSSCCCSSCC
T ss_pred CcCCCCCCEEECc-eEEEECCccccCCCCCccccCccC-CCCceECcCCeEeeCHHHHHHHhCccCCCcC
Confidence 3899999999843 568899999999999999999999 555899999999999 699998766555443
No 62
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.50 E-value=1.1e-14 Score=100.92 Aligned_cols=68 Identities=29% Similarity=0.470 Sum_probs=60.4
Q ss_pred cccccCCccCCCceEEecCCcccccCccccccCCccccCCCeEEEeCCeeecHHHHHHHhhhhcccCCC
Q psy7480 117 YCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFANIAYNP 185 (204)
Q Consensus 117 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~~~~~~ 185 (204)
+|.+|+++|.+++.+|.+.++.||++||+|..|+++| .+..|+..+|++||+.||.+++.........
T Consensus 7 ~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~ 74 (101)
T 2cup_A 7 GCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPL-ANETFVAKDNKILCNKCTTREDSPKCKGCFK 74 (101)
T ss_dssp BCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCT-TSSCCEEETTEEECHHHHTTCCCCBCSSSCC
T ss_pred cCcccCCcccCCceEEEECccChhhcCCcccccCCCC-CcCeeECcCCEEEChhHhhhhcCCccccCCC
Confidence 9999999997555789999999999999999999999 6778999999999999999987666666553
No 63
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.50 E-value=1.1e-14 Score=96.62 Aligned_cols=67 Identities=25% Similarity=0.495 Sum_probs=60.3
Q ss_pred CCCccccccccccccceeEeecCccccccCccccCCCcccCcCCCeEEeeCCeecccccccccccCcccccc
Q psy7480 49 GGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAA 120 (204)
Q Consensus 49 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~~~~~C~~ 120 (204)
...++|.+|+++|.+. .+.++++.||++||+|..|+++|. +..|+.+++++||..||.++|++ +|+.
T Consensus 13 ~~~~~C~~C~~~I~~~-~v~a~~~~~H~~CF~C~~C~~~L~--~~~~~~~~~~~yC~~cy~~~f~~--~c~s 79 (80)
T 2cuq_A 13 KFAPRCARCSKTLTQG-GVTYRDQPWHRECLVCTGCQTPLA--GQQFTSRDEDPYCVACFGELFAS--GPSS 79 (80)
T ss_dssp CSSCCCTTTCCCCCSC-CEESSSSEECTTTCBCSSSCCBCT--TCCEEECSSSEEEHHHHHHHTTC--STTC
T ss_pred ccCCcCCCCCCEecCc-EEEECCchhhhhhCCcccCCCcCC--CCeeEeECCEEECHHHHHHHcCC--CCCC
Confidence 4568999999999886 688999999999999999999997 35789999999999999999998 8863
No 64
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.50 E-value=1e-14 Score=97.05 Aligned_cols=67 Identities=28% Similarity=0.642 Sum_probs=58.8
Q ss_pred CCCccccccccccccceeEeecCccccccCccccCCCcccCcCCCeEEee-CCeecccccccccccCcccccc
Q psy7480 49 GGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQK-ANLILCKRDYLRLFGTTGYCAA 120 (204)
Q Consensus 49 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~~-~g~~~C~~cy~~~~~~~~~C~~ 120 (204)
...++|.+|+++|.+. ++.++++.||++||+|..|+++|. +..|+.. +|++||..||.++|++ +|++
T Consensus 13 ~~~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~--~~~f~~~~~g~~yC~~cy~~~f~~--~C~~ 80 (81)
T 2dlo_A 13 ATLEKCATCSQPILDR-ILRAMGKAYHPGCFTCVVCHRGLD--GIPFTVDATSQIHCIEDFHRKFAS--GPSS 80 (81)
T ss_dssp SSCCBCTTTCCBCCSC-CEEETTEEECTTTCBCSSSCCBCT--TSCEECCTTCCCEEHHHHHHHTTS--SSCC
T ss_pred cCCCccccCCCeecce-eEEECCccccHHhcCcccCCCccC--CCeeEECCCCEEECHHHHHHHhcC--cCCC
Confidence 3578999999999976 789999999999999999999997 3556665 7899999999999998 8864
No 65
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.49 E-value=1.4e-14 Score=96.48 Aligned_cols=65 Identities=18% Similarity=0.472 Sum_probs=53.5
Q ss_pred cccccCCccCCCceEEecCCcccccCccccccCCccccCCCeEEEeCCeeecHHHHHHHhhhhcccC
Q psy7480 117 YCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFANIAY 183 (204)
Q Consensus 117 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~~~~ 183 (204)
+|..|+++|... ..+.+.++.||++||+|..|+++| .+..|+..++++||+.||.++|.......
T Consensus 9 ~C~~C~~~I~~~-~~~~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~~~~yC~~cy~~~f~~~c~gc 73 (81)
T 1a7i_A 9 KCGACGRTVYHA-EEVQCDGRSFHRCCFLCMVCRKNL-DSTTVAIHDAEVYCKSCYGKKYGPKGYGY 73 (81)
T ss_dssp BCSSSCCBCSST-TEEEETTEEEESSSEECSSSCCEE-CSSCCEEETTEEECSHHHHHHCC------
T ss_pred cCcCcCccccCc-eeEEeCCcccccccCccCCCCCCC-CCCCeEeeCCEEECHHHHHHHhCCccccc
Confidence 899999999754 478999999999999999999999 56679999999999999999876554433
No 66
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.48 E-value=1.7e-14 Score=103.63 Aligned_cols=59 Identities=27% Similarity=0.600 Sum_probs=53.2
Q ss_pred cccccCCccCCCceEEecCCcccccCccccccCCccccC-CCeEEEeCCeeecHHHHHHHh
Q psy7480 117 YCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCV-GDRFYLCDNKILCEYDYEERQ 176 (204)
Q Consensus 117 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~-~~~~~~~~~~~~C~~c~~~~~ 176 (204)
+|.+|+++|.+ ..++.+.++.||++||+|..|+++|.. +..|+.++|++||+.||.++|
T Consensus 63 ~C~~C~~~I~~-~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~F 122 (123)
T 2l4z_A 63 RCAGCGGKIAD-RFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLF 122 (123)
T ss_dssp BBSSSSSBCCS-SSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHC
T ss_pred cCcCCCCCcCC-cEEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhc
Confidence 99999999986 347899999999999999999999952 578999999999999999875
No 67
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.48 E-value=2.2e-14 Score=110.68 Aligned_cols=73 Identities=27% Similarity=0.552 Sum_probs=66.3
Q ss_pred CCCccccccccccccceeEeecCccccccCccccCCCcccCcCCCeEEeeCCeecccccccccccCcccccccCCcc
Q psy7480 49 GGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVI 125 (204)
Q Consensus 49 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~~~~~C~~C~~~I 125 (204)
.+.++|.+|+++|.+.+.+.++++.||++||+|..|+.+|.. ..|+.+++++||..||.++|++ +|.+|++++
T Consensus 113 ~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~--~~~~~~~g~~yC~~cy~~~f~~--kc~~C~~~~ 185 (192)
T 1b8t_A 113 GGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLES--TTLADKDGEIYCKGCYAKNFGP--KGFGFGQGA 185 (192)
T ss_dssp CCCEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCS--SSEEEETTEEEEHHHHHHHTCC--CCCCCCCCC
T ss_pred CCCCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCC--CcccccCCEEeCHHHHHHhcCC--cCCCCCCcc
Confidence 346789999999997767889999999999999999999973 4689999999999999999998 999999986
No 68
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.48 E-value=2.9e-14 Score=93.10 Aligned_cols=64 Identities=28% Similarity=0.459 Sum_probs=56.6
Q ss_pred CCCccccccccccccceeEeecCccccccCccccCCCcccCcCCCeEEeeCCeecccccccccccC
Q psy7480 49 GGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGT 114 (204)
Q Consensus 49 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~~ 114 (204)
.+.++|.+|+++|.+. ++.++++.||++||+|..|+.+|.. +..|+..++++||..||.+++..
T Consensus 3 ~~~~~C~~C~~~I~~~-~v~a~~~~wH~~CF~C~~C~~~L~~-~~~f~~~~~~~yC~~C~~~~~~~ 66 (73)
T 1wig_A 3 SGSSGCDSCEKYITGR-VLEAGEKHYHPSCALCVRCGQMFAE-GEEMYLQGSSIWHPACRQAARTE 66 (73)
T ss_dssp CSCCSCSSSCCCCSSC-CBCCSSCCBCTTTSCCSSSCCCCCS-SCCCEEETTEEECTTHHHHTSSS
T ss_pred cCcCCcccCCCEecCe-eEEeCCCCCCCCcCEeCCCCCCCCC-CCeeEeeCCEEEChHHChHhhcc
Confidence 4568999999999986 6889999999999999999999973 36789999999999999988764
No 69
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.47 E-value=3.5e-14 Score=94.63 Aligned_cols=68 Identities=21% Similarity=0.453 Sum_probs=59.6
Q ss_pred CCCCccccccccccccc-eeEeecCccccccCccccCCCcccCcCCCeEEeeCCeecccccccccccCccccc
Q psy7480 48 SGGLKECASCGKRITER-FLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCA 119 (204)
Q Consensus 48 ~~~~~~C~~C~~~I~~~-~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~~~~~C~ 119 (204)
....++|.+|+++|... .++.++++.||++||+|..|+++|.. ..|+.+++++||..||.++|++ +|.
T Consensus 12 ~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~--~~~~~~~~~~yC~~cy~~~f~~--~~~ 80 (82)
T 1x63_A 12 REDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGT--GSFFPKGEDFYCVTCHETKFAS--GPS 80 (82)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTT--SCEEEETTEEEEHHHHHHHTSC--CCS
T ss_pred cccCCcCccCCcccccCceEEEECccccccccCchhhCCCccCC--CccEeeCCEEECHHHHHHHhCC--CCC
Confidence 34567999999999964 46899999999999999999999984 5689999999999999999998 664
No 70
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.46 E-value=7.7e-14 Score=100.47 Aligned_cols=66 Identities=23% Similarity=0.540 Sum_probs=58.8
Q ss_pred cccccCCccCCCceEEecCCcccccCccccccCCccccCCCeEEEeCCeeecHHHHHHHhhhhcccCC
Q psy7480 117 YCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFANIAYN 184 (204)
Q Consensus 117 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~~~~~ 184 (204)
+|.+|+++|.+. .++.++|+.||++||+|..|+++| .+..|+..+|++||+.||.+++........
T Consensus 5 ~C~~C~~~I~~~-~~~~a~~~~~H~~CF~C~~C~~~L-~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~ 70 (126)
T 2xqn_T 5 RCAGCDELIFSN-EYTQAENQNWHLKHFCCFDCDSIL-AGEIYVMVNDKPVCKPCYVKNHAVVCQGCH 70 (126)
T ss_dssp BBTTTSSBCCSS-CEEEETTEEECGGGSBCTTTCCBC-TTSEEEEETTEEEEHHHHHHHSCCBCTTTC
T ss_pred CCccCCCEeCCc-eEEeeCCCCccCCCCCcCCCCCCC-CcCEEEeECCEEechHHhCcCcCccCcccC
Confidence 999999999853 588999999999999999999999 677999999999999999998766665555
No 71
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.46 E-value=4.2e-14 Score=100.22 Aligned_cols=67 Identities=24% Similarity=0.497 Sum_probs=57.6
Q ss_pred ccccccCCccCCCceEEecCCcccccCccccccCCccccC-CCeEEEeCCeeecHHHHHHHhhhhcccC
Q psy7480 116 GYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCV-GDRFYLCDNKILCEYDYEERQVFANIAY 183 (204)
Q Consensus 116 ~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~-~~~~~~~~~~~~C~~c~~~~~~~~~~~~ 183 (204)
++|.+|+++|.+ ..++.|.++.||++||+|..|+++|.. +..|+..+|++||+.||.++|.......
T Consensus 4 ~~C~~C~~~I~~-~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~c~~c 71 (114)
T 1j2o_A 4 LTCGGCQQNIGD-RYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHMG 71 (114)
T ss_dssp BCBSSSCSCBCS-SEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSCCSSC
T ss_pred CCCcCCCCeeCC-cEEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCcccCcC
Confidence 489999999986 348899999999999999999999943 4689999999999999999986654433
No 72
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.44 E-value=5.4e-14 Score=95.68 Aligned_cols=62 Identities=23% Similarity=0.589 Sum_probs=54.4
Q ss_pred cccccCCccCCCceEEecCCcccccCccccccCCccccCCCeEEEeCCeeecHHHHHHHhhhhc
Q psy7480 117 YCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFAN 180 (204)
Q Consensus 117 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~ 180 (204)
+|..|+++|.+.+ .|.+.++.||++||+|..|+++| .+..|+..++.+||+.||.++|....
T Consensus 17 ~C~~C~~~I~~~~-~v~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~g~~yC~~~y~~~f~~kc 78 (91)
T 2d8y_A 17 TCVECQKTVYPME-RLLANQQVFHISCFRCSYCNNKL-SLGTYASLHGRIYCKPHFNQLFKSKG 78 (91)
T ss_dssp BCTTTCCBCCTTS-EEECSSSEEETTTCBCTTTCCBC-CTTTCCCSSSCCCCHHHHHHHSCCCS
T ss_pred cCccCCCccCCce-eEEECCCEECCCCCeeCCCCCCC-CCCCcEeECCEEECHHHHHHHhCCCc
Confidence 8999999998644 57899999999999999999999 55569999999999999999875544
No 73
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.43 E-value=5.1e-14 Score=91.33 Aligned_cols=63 Identities=21% Similarity=0.523 Sum_probs=55.4
Q ss_pred CCCccccccccccccc-eeEeecCccccccCccccCCCcccCcCCCeEEeeCCeeccccccccccc
Q psy7480 49 GGLKECASCGKRITER-FLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113 (204)
Q Consensus 49 ~~~~~C~~C~~~I~~~-~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~ 113 (204)
...++|.+|+++|... .++.++++.||+.||+|..|+++|.. ..|+.++|++||..||.++|+
T Consensus 9 ~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~--~~~~~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 9 SASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPE--GLFYEFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp CTTCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGG--GCCEEETTEEECHHHHHHHTC
T ss_pred cCCccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCC--CCeEeECCeEeCHHHHHHhhC
Confidence 4567899999999976 45789999999999999999999984 468899999999999998875
No 74
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.43 E-value=1.4e-13 Score=98.75 Aligned_cols=74 Identities=23% Similarity=0.419 Sum_probs=65.2
Q ss_pred ccccccccccccc-eeEeecCccccccCccccCCCcccCcCCCeEEeeCCeecccccccccccCcccccccCCccCCC
Q psy7480 52 KECASCGKRITER-FLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 128 (204)
Q Consensus 52 ~~C~~C~~~I~~~-~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~~~~~C~~C~~~I~~~ 128 (204)
++|.+|+++|... .++.++++.||..||+|..|++.|.. +..|+..++++||..||.+++++ +|..++..+.+.
T Consensus 9 ~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~-g~~f~~~~g~~yC~~cy~~~~~~--~~~~~~~~~~~~ 83 (123)
T 2l3k_A 9 GLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSV-GDRYLLINSDIVCEQDIYEWTKI--NGGSGGSGGSGG 83 (123)
T ss_dssp CCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCT-TCEEEECSSSEEEGGGHHHHHHH--HTCCCCCCSCCS
T ss_pred CcccCCCCeecCCceEEEECCcccccccCccccCCCCCCC-CCcEEeeCCEEEcHHHhHHHhcc--ccCCCCCCCccC
Confidence 3899999999974 56789999999999999999999952 45799999999999999999998 999998887654
No 75
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.42 E-value=7.5e-14 Score=100.08 Aligned_cols=67 Identities=25% Similarity=0.458 Sum_probs=57.7
Q ss_pred cccccCCccCCCceEEecCCcccccCccccccCCccccC-CCeEEEeCCeeecHHHHHHHhhh--hcccCC
Q psy7480 117 YCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCV-GDRFYLCDNKILCEYDYEERQVF--ANIAYN 184 (204)
Q Consensus 117 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~-~~~~~~~~~~~~C~~c~~~~~~~--~~~~~~ 184 (204)
+|.+|+++|.+. .++.+.++.||++||+|..|+++|.. +..|+..+|++||+.||.++|.. ......
T Consensus 7 ~C~~C~~~I~~~-~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~ 76 (122)
T 1m3v_A 7 RCAGCGGKIADR-FLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGG 76 (122)
T ss_dssp CBSSSSSCCCSS-CCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSS
T ss_pred CCcccCCEeCCc-EEEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCC
Confidence 999999999863 36889999999999999999999942 46799999999999999999876 555554
No 76
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.41 E-value=9.6e-14 Score=92.30 Aligned_cols=68 Identities=15% Similarity=0.342 Sum_probs=58.0
Q ss_pred CCCCccccccccccccceeEeecCccccccCccccCCCcccCcCCCeEE-eeCCeecccccccccccCccccc
Q psy7480 48 SGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLY-QKANLILCKRDYLRLFGTTGYCA 119 (204)
Q Consensus 48 ~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~-~~~g~~~C~~cy~~~~~~~~~C~ 119 (204)
....++|.+|+++|.+. .+.++++.||++||+|..|++.|.. +..|. .+++++||..||.++|++ .|+
T Consensus 12 ~~~~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~~-g~~f~~~~~~~~~C~~c~~~~~~~--~~s 80 (81)
T 1x6a_A 12 GKFGEFCHGCSLLMTGP-FMVAGEFKYHPECFACMSCKVIIED-GDAYALVQHATLYCGKCHNEVVSG--PSS 80 (81)
T ss_dssp CCSSCBCTTTCCBCCSC-CBCCTTCCBCTTSCBCTTTCCBCCT-TSCEEECSSSCEEEHHHHHHHHCT--TSC
T ss_pred hhcCCcCccCCCCcCce-EEEECCceeccccCCccCCCCccCC-CCcEEEeeCCEEECHHHHHHHhcC--CCC
Confidence 44567899999999955 6889999999999999999999963 34566 589999999999999987 654
No 77
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.40 E-value=1.3e-13 Score=87.95 Aligned_cols=59 Identities=22% Similarity=0.587 Sum_probs=52.4
Q ss_pred Cccccccccccccc-eeEeecCcccc--ccCccccCCCcccCcCCCeEEeeCCeecc-ccccccc
Q psy7480 51 LKECASCGKRITER-FLLKALDLFWH--EDCLKCGCCDCRLGEVGSTLYQKANLILC-KRDYLRL 111 (204)
Q Consensus 51 ~~~C~~C~~~I~~~-~~~~~~~~~~H--~~Cf~C~~C~~~L~~~~~~~~~~~g~~~C-~~cy~~~ 111 (204)
.++|.+|+++|... ..+.++++.|| ++||+|..|+.+|. +..|+.++|++|| .+||.++
T Consensus 2 a~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~--~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 2 AVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLI--GQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp CEECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCT--TSCCEEETTEEESSHHHHHTT
T ss_pred cCCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCC--CCceEEECCEEecCHHHhhhh
Confidence 56899999999963 57999999999 99999999999997 4679999999999 8888754
No 78
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.39 E-value=4.9e-13 Score=96.84 Aligned_cols=62 Identities=26% Similarity=0.561 Sum_probs=55.1
Q ss_pred ccccccCCccCCCceEEecCCcccccCccccccCCccccC-CCeEEEeCCeeecHHHHHHHhhh
Q psy7480 116 GYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCV-GDRFYLCDNKILCEYDYEERQVF 178 (204)
Q Consensus 116 ~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~-~~~~~~~~~~~~C~~c~~~~~~~ 178 (204)
++|.+|+++|.+ ..++.|.++.||++||+|..|+++|.. +..|+..+|++||+.||.+++..
T Consensus 3 ~~C~~C~~~I~~-~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~ 65 (131)
T 2xjy_A 3 LTCGGCQQNIGD-RYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQ 65 (131)
T ss_dssp CBBTTTCCBCCS-SEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCC
T ss_pred ccCcCCCCEeCC-cEEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCC
Confidence 389999999986 347899999999999999999999953 56899999999999999998765
No 79
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.39 E-value=4.1e-14 Score=94.44 Aligned_cols=59 Identities=17% Similarity=0.484 Sum_probs=50.4
Q ss_pred ccccccCCccCCCceEEecCCcccccCccccccCCccccCCCeEE--EeCCeeecHHHHHHHh
Q psy7480 116 GYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFY--LCDNKILCEYDYEERQ 176 (204)
Q Consensus 116 ~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~--~~~~~~~C~~c~~~~~ 176 (204)
++|.+|+++|... +.+.+.++.||++||+|..|+++| .+..|+ ..+|++||+.||.+++
T Consensus 16 ~~C~~C~~~I~~~-e~v~a~~~~wH~~CF~C~~C~~~L-~~~~~~~~~~~g~~yC~~~y~~~~ 76 (82)
T 2co8_A 16 DLCALCGEHLYVL-ERLCVNGHFFHRSCFRCHTCEATL-WPGGYEQHPGDGHFYCLQHLPQTD 76 (82)
T ss_dssp CBCSSSCCBCCTT-TBCCBTTBCCBTTTCBCSSSCCBC-CTTSEECCTTTCCCEETTTCCCCC
T ss_pred CCCcccCCCcccc-eEEEECCCeeCCCcCEEcCCCCCc-CCCceeEeCcCCEEEChHHHHhhh
Confidence 4899999999754 356799999999999999999999 566677 4689999999998764
No 80
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=1.9e-13 Score=89.96 Aligned_cols=60 Identities=22% Similarity=0.455 Sum_probs=53.3
Q ss_pred CCCcccccccccccc----ceeEeecCccccccCccccCCCcccCcCCCeEEeeCCeecccccccc
Q psy7480 49 GGLKECASCGKRITE----RFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110 (204)
Q Consensus 49 ~~~~~C~~C~~~I~~----~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~ 110 (204)
...++|++|+++|.+ ..++.++++.||+.||+|..|+++|. +..|+.+++++||..||.+
T Consensus 13 ~~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~--~~~f~~~~~~~yC~~cy~~ 76 (77)
T 2egq_A 13 FVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLA--NKRFVFHQEQVYCPDCAKK 76 (77)
T ss_dssp CCCCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCT--TSCCCEETTEECCHHHHHH
T ss_pred hhCccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCC--CCccEeECCEEEChHHhcc
Confidence 456889999999995 46799999999999999999999997 3568899999999999965
No 81
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.35 E-value=1.4e-12 Score=99.77 Aligned_cols=80 Identities=18% Similarity=0.314 Sum_probs=62.7
Q ss_pred Ceeccccccc---ccccCcccccccCCccCCCceEEecCCcccccCccccccCCccccCCCeEEEeCCeeecHHHHHHHh
Q psy7480 100 NLILCKRDYL---RLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQ 176 (204)
Q Consensus 100 g~~~C~~cy~---~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~ 176 (204)
+..+|...+. ....+ +|.+|+++|.+ ..++.+.++.||++||+|..|+++| .+..| ..+|++||+.||.++|
T Consensus 44 ~~~~~~~~~~~~~~~~~~--~C~~C~~~I~~-~~~~~a~~~~wH~~CF~C~~C~~~L-~~~~f-~~~g~~yC~~~y~~~f 118 (182)
T 2jtn_A 44 DEGGSGGHMGSGGTPEIP--MCAGCDQHILD-RFILKALDRHWHSKCLKCSDCHVPL-AERCF-SRGESVYCKDDFFKRF 118 (182)
T ss_dssp SSCSSSSSCCCCCCCSCC--BCBTSSSBCCC-SEEEEETTEEECSSTTSCTTTCCCC-SSCCE-EETTEEECHHHHHHTT
T ss_pred cccccccccccCCCCCCC--cCccCCCCccC-ceeEEecCCeEccccCccCCCCCcc-CCCce-eECCEeeecCcccccc
Confidence 4456665554 22233 99999999986 3578899999999999999999999 45455 6899999999999997
Q ss_pred hhhcccCC
Q psy7480 177 VFANIAYN 184 (204)
Q Consensus 177 ~~~~~~~~ 184 (204)
........
T Consensus 119 ~~kC~~C~ 126 (182)
T 2jtn_A 119 GTKCAACQ 126 (182)
T ss_dssp SCCCTTTC
T ss_pred ccccccCC
Confidence 66665555
No 82
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.32 E-value=1.5e-12 Score=99.99 Aligned_cols=61 Identities=26% Similarity=0.545 Sum_probs=55.1
Q ss_pred cccccCCccCCCceEEecCCcccccCccccccCCccccC-CCeEEEeCCeeecHHHHHHHhhh
Q psy7480 117 YCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCV-GDRFYLCDNKILCEYDYEERQVF 178 (204)
Q Consensus 117 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~-~~~~~~~~~~~~C~~c~~~~~~~ 178 (204)
+|.+|+++|.+ ..++.|+++.||++||+|..|+++|.. +..|+..+|++||+.||.+++..
T Consensus 7 ~C~~C~~~I~~-~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~ 68 (188)
T 1rut_X 7 RCAGCGGKIAD-RFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN 68 (188)
T ss_dssp BBTTTCCBCCC-SEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSC
T ss_pred cCccCCCEeCC-ceeEEecCcEecccCcccCCCCcccccCCceEEEeCCcccccccccccccc
Confidence 89999999986 347899999999999999999999954 57899999999999999998765
No 83
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.26 E-value=4.9e-12 Score=95.54 Aligned_cols=65 Identities=22% Similarity=0.522 Sum_probs=55.8
Q ss_pred cccccCCccCCCceEEecCCcccccCccccccCCccccCCCeEEEeCCeeecHHHHHHHhhhhcccCC
Q psy7480 117 YCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFANIAYN 184 (204)
Q Consensus 117 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~~~~~ 184 (204)
+|.+|+++|.+ ..++.|.|+.||++||+|..|+++| .+..| ..+|.+||+.||.++|........
T Consensus 8 ~C~~C~~~I~~-~~~~~a~~~~wH~~CF~C~~C~~~L-~~~~f-~~~g~~yC~~~y~~~f~~~C~~C~ 72 (169)
T 2rgt_A 8 MCAGCDQHILD-RFILKALDRHWHSKCLKCSDCHVPL-AERCF-SRGESVYCKDDFFKRFGTKCAACQ 72 (169)
T ss_dssp BBSSSSSBCCS-SSCEECSSCEECTTTSBCTTTCCBC-CSCCE-ESSSCEECHHHHHHHHSCBCTTTC
T ss_pred ccccCCCccCC-cEEEEECCcEEccccCccCCCCCcC-CCCCc-ccCCeeeecccccccccccccccc
Confidence 89999999986 3467899999999999999999999 44444 789999999999999876666555
No 84
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.21 E-value=1.1e-11 Score=82.33 Aligned_cols=64 Identities=22% Similarity=0.424 Sum_probs=51.8
Q ss_pred CCCccccccccccccceeEeecCccccccCccccCCCcccCcCCCeEEeeCCeecccccccccccC
Q psy7480 49 GGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGT 114 (204)
Q Consensus 49 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~~ 114 (204)
...++|.+|+++|.+. ++.++++.||++||+|..|+++|.. +..+...++.+||..||.+.+..
T Consensus 13 ~~~~~C~~C~~~I~~~-~v~a~~~~wH~~CF~C~~C~~~L~~-~~~~~~~~~~~~C~~C~~~~~~~ 76 (81)
T 1v6g_A 13 LYGTRCFSCDQFIEGE-VVSALGKTYHPDCFVCAVCRLPFPP-GDRVTFNGKECMCQKCSLPVSVS 76 (81)
T ss_dssp SCCCBCTTTCCBCCSC-CEEETTEEECTTTSSCSSSCCCCCS-SSCEEEETTEEEEHHHHSCCSSC
T ss_pred HhCCcCccccCEeccc-eEEECCceeCccCCccccCCCCCCC-CCEEEeCCCCEEChhhhcccCCC
Confidence 3457899999999965 7899999999999999999999974 23344444567999999877654
No 85
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=97.93 E-value=2.5e-06 Score=45.59 Aligned_cols=29 Identities=38% Similarity=0.870 Sum_probs=26.5
Q ss_pred CccccccccccccceeEeecCccccccCc
Q psy7480 51 LKECASCGKRITERFLLKALDLFWHEDCL 79 (204)
Q Consensus 51 ~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf 79 (204)
.+.|..|++.|+..+.+.++|+.||..||
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred CCcCCccCCEEecceeEEECCeEecccCC
Confidence 46899999999998888899999999998
No 86
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=97.62 E-value=1.4e-05 Score=42.58 Aligned_cols=27 Identities=30% Similarity=0.722 Sum_probs=23.8
Q ss_pred cccccCCccCCCceEEecCCcccccCcc
Q psy7480 117 YCAACTKVIPAFEMVMRAKNNVYHLECF 144 (204)
Q Consensus 117 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf 144 (204)
+|..|++.+.+.+ .+.+.|+.||..||
T Consensus 5 ~C~~C~k~Vy~~E-k~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 5 NCARCGKIVYPTE-KVNCLDKFWHKACF 31 (31)
T ss_dssp BCSSSCSBCCGGG-CCCSSSSCCCGGGC
T ss_pred cCCccCCEEecce-eEEECCeEecccCC
Confidence 8999999998764 55688999999998
No 87
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=90.05 E-value=0.21 Score=34.68 Aligned_cols=94 Identities=13% Similarity=0.268 Sum_probs=57.3
Q ss_pred ccccCCCcccCcC----CCeEEeeCCeecccccccccccCcccccccCCccCCCceEEecCCcccccCccccccCCcccc
Q psy7480 79 LKCGCCDCRLGEV----GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFC 154 (204)
Q Consensus 79 f~C~~C~~~L~~~----~~~~~~~~g~~~C~~cy~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~ 154 (204)
+.|..|...+.+. .......-|..||..|..+.+.....|..|.+.+...+.. .. ..-.+=+.|..|...+.
T Consensus 8 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~-~l---~i~~~~~~C~iC~~~~~ 83 (133)
T 4ap4_A 8 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYH-PI---YIGSGTVSCPICMDGYS 83 (133)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEE-EC---BCSSSSCBCTTTCCBHH
T ss_pred CCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccccc-cc---ccCCCCCCCCCCCCccc
Confidence 4566666555421 1124556788888888876544334899999998753322 11 12234566888887773
Q ss_pred C----CCe-EEEeCCeeecHHHHHHHh
Q psy7480 155 V----GDR-FYLCDNKILCEYDYEERQ 176 (204)
Q Consensus 155 ~----~~~-~~~~~~~~~C~~c~~~~~ 176 (204)
. +.. ....=|..||..|..+-+
T Consensus 84 ~~~~~~~~~~~~~CgH~fc~~Ci~~~~ 110 (133)
T 4ap4_A 84 EIVQNGRLIVSTECGHVFCSQCLRDSL 110 (133)
T ss_dssp HHHHTTCCEEEETTSBEEEHHHHHHHH
T ss_pred cccccCcceEeCCCCChhhHHHHHHHH
Confidence 2 111 333459999999988654
No 88
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=86.57 E-value=0.5 Score=29.63 Aligned_cols=47 Identities=4% Similarity=0.117 Sum_probs=33.7
Q ss_pred CccccCCCcccCcCCCeEEeeCCeecccccccccccC-cccccccCCccCC
Q psy7480 78 CLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGT-TGYCAACTKVIPA 127 (204)
Q Consensus 78 Cf~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~~-~~~C~~C~~~I~~ 127 (204)
-|.|..|...+. ......-|..||..|..+.+.. ...|..|+..+..
T Consensus 8 ~~~C~IC~~~~~---~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 8 YFRCPISLELMK---DPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSCTTTSCCCS---SEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred cCCCCCcccccc---CCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 467888887775 4456678899999998765532 2378888888754
No 89
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.31 E-value=0.63 Score=28.65 Aligned_cols=31 Identities=19% Similarity=0.239 Sum_probs=19.1
Q ss_pred EeeCCeecccccccccccCcccccccCCccC
Q psy7480 96 YQKANLILCKRDYLRLFGTTGYCAACTKVIP 126 (204)
Q Consensus 96 ~~~~g~~~C~~cy~~~~~~~~~C~~C~~~I~ 126 (204)
...-|+.||..|..+.+.....|..|...|.
T Consensus 30 ~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 30 SLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp EETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred EccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 3345666777776554332237888888775
No 90
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=83.92 E-value=0.94 Score=28.30 Aligned_cols=28 Identities=14% Similarity=0.357 Sum_probs=15.1
Q ss_pred CeecccccccccccCcccccccCCccCC
Q psy7480 100 NLILCKRDYLRLFGTTGYCAACTKVIPA 127 (204)
Q Consensus 100 g~~~C~~cy~~~~~~~~~C~~C~~~I~~ 127 (204)
+..||..|..+.+.....|..|...|..
T Consensus 37 ~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 37 NHLFHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp SCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred CCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence 3444555554333222268888877754
No 91
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=83.24 E-value=0.61 Score=32.96 Aligned_cols=45 Identities=18% Similarity=0.270 Sum_probs=29.6
Q ss_pred ccccCCCcccCcCCCeEEeeCCeecccccccccccCcccccccCCccC
Q psy7480 79 LKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIP 126 (204)
Q Consensus 79 f~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~~~~~C~~C~~~I~ 126 (204)
+.|..|...+. ......-|+.||..|..+.+.....|..|..+|.
T Consensus 54 ~~C~iC~~~~~---~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 54 LQCIICSEYFI---EAVTLNCAHSFCSYCINEWMKRKIECPICRKDIK 98 (138)
T ss_dssp SBCTTTCSBCS---SEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred CCCcccCcccC---CceECCCCCCccHHHHHHHHHcCCcCCCCCCcCC
Confidence 46777777765 3455677888888887654433236777777764
No 92
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=82.04 E-value=1.2 Score=25.64 Aligned_cols=27 Identities=11% Similarity=0.196 Sum_probs=13.8
Q ss_pred CCeecccccccccccCcccccccCCcc
Q psy7480 99 ANLILCKRDYLRLFGTTGYCAACTKVI 125 (204)
Q Consensus 99 ~g~~~C~~cy~~~~~~~~~C~~C~~~I 125 (204)
-|..||..|..+.+.....|..|...|
T Consensus 27 C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 27 CGHGFHAECVDMWLGSHSTCPLCRLTV 53 (55)
T ss_dssp SCCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred CCCcccHHHHHHHHHcCCcCcCCCCEe
Confidence 344555555544332223677776655
No 93
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.51 E-value=0.48 Score=30.03 Aligned_cols=45 Identities=20% Similarity=0.423 Sum_probs=24.5
Q ss_pred ccccCCCcccCcCCCeEEeeCCeecccccccccccCcccccccCCccC
Q psy7480 79 LKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIP 126 (204)
Q Consensus 79 f~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~~~~~C~~C~~~I~ 126 (204)
+.|..|...+. ......-|+.||..|..+.+.....|..|...+.
T Consensus 16 ~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 16 FRCFICRQAFQ---NPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp SBCSSSCSBCC---SEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCcCCCchhc---CeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 34555554443 2334455666777776554432226777777764
No 94
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.99 E-value=1 Score=27.65 Aligned_cols=46 Identities=13% Similarity=0.205 Sum_probs=25.5
Q ss_pred ccccCCCcccCcCCCeEEeeCCeeccccccccccc---CcccccccCCccCC
Q psy7480 79 LKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG---TTGYCAACTKVIPA 127 (204)
Q Consensus 79 f~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~---~~~~C~~C~~~I~~ 127 (204)
+.|..|...+. ......-|+.||..|..+.+. ....|..|...|..
T Consensus 21 ~~C~IC~~~~~---~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 21 VICPICLDILQ---KPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CBCTTTCSBCS---SEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred CEeccCCcccC---CeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 34444544443 223335566677777665442 12278888888754
No 95
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.91 E-value=0.45 Score=28.84 Aligned_cols=46 Identities=22% Similarity=0.427 Sum_probs=27.9
Q ss_pred ccccCCCcccCcCCCeEEeeCCeecccccccccc-cCcccccccCCccCC
Q psy7480 79 LKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLF-GTTGYCAACTKVIPA 127 (204)
Q Consensus 79 f~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~-~~~~~C~~C~~~I~~ 127 (204)
+.|..|...+.. .....-|..||..|..+.+ .....|..|...|..
T Consensus 16 ~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 16 YKCEKCHLVLCS---PKQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp EECTTTCCEESS---CCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CCCCCCChHhcC---eeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 455566555542 2234567778888877654 222379999888854
No 96
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.09 E-value=0.69 Score=28.54 Aligned_cols=46 Identities=22% Similarity=0.409 Sum_probs=27.4
Q ss_pred ccccCCCcccCcCCCeEEe-eCCeecccccccccccCcccccccCCccCC
Q psy7480 79 LKCGCCDCRLGEVGSTLYQ-KANLILCKRDYLRLFGTTGYCAACTKVIPA 127 (204)
Q Consensus 79 f~C~~C~~~L~~~~~~~~~-~~g~~~C~~cy~~~~~~~~~C~~C~~~I~~ 127 (204)
+.|..|...+. ..... .-|+.||..|..+.+.....|..|.+.|..
T Consensus 16 ~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 16 ILCSICKGYLI---DATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62 (72)
T ss_dssp GSCTTTSSCCS---SCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred CCCCCCChHHH---CcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence 45555655554 22333 566777877776544322378888888854
No 97
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=78.26 E-value=1.3 Score=30.16 Aligned_cols=45 Identities=22% Similarity=0.391 Sum_probs=32.1
Q ss_pred CccccCCCcccCcCCCeEEe-eCCeecccccccccccCcccccccCCccCC
Q psy7480 78 CLKCGCCDCRLGEVGSTLYQ-KANLILCKRDYLRLFGTTGYCAACTKVIPA 127 (204)
Q Consensus 78 Cf~C~~C~~~L~~~~~~~~~-~~g~~~C~~cy~~~~~~~~~C~~C~~~I~~ 127 (204)
-+.|..|...+. ..... .-|+.||..|....+.. .|..|..++..
T Consensus 22 ~~~C~IC~~~~~---~pv~~~~CgH~fC~~Ci~~~~~~--~CP~Cr~~~~~ 67 (117)
T 1jm7_B 22 LLRCSRCTNILR---EPVCLGGCEHIFCSNCVSDCIGT--GCPVCYTPAWI 67 (117)
T ss_dssp TTSCSSSCSCCS---SCBCCCSSSCCBCTTTGGGGTTT--BCSSSCCBCSC
T ss_pred CCCCCCCChHhh---CccEeCCCCCHHHHHHHHHHhcC--CCcCCCCcCcc
Confidence 367777777765 33444 67888888888777665 89999888743
No 98
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=78.24 E-value=0.94 Score=29.82 Aligned_cols=45 Identities=16% Similarity=0.417 Sum_probs=26.3
Q ss_pred ccccCCCcccCcCCCeEEe-eCCeecccccccccccCcccccccCCccC
Q psy7480 79 LKCGCCDCRLGEVGSTLYQ-KANLILCKRDYLRLFGTTGYCAACTKVIP 126 (204)
Q Consensus 79 f~C~~C~~~L~~~~~~~~~-~~g~~~C~~cy~~~~~~~~~C~~C~~~I~ 126 (204)
+.|..|...+. ..... .-|+.||..|..+.+.....|..|...+.
T Consensus 23 ~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 68 (99)
T 2y43_A 23 LRCGICFEYFN---IAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVT 68 (99)
T ss_dssp TBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCcccCChhhC---CcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCC
Confidence 45666666654 23333 56677777776554432236777776664
No 99
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=77.56 E-value=1.2 Score=29.90 Aligned_cols=46 Identities=22% Similarity=0.418 Sum_probs=28.8
Q ss_pred ccccCCCcccCcCCCeEEe-eCCeecccccccccccCcccccccCCccCC
Q psy7480 79 LKCGCCDCRLGEVGSTLYQ-KANLILCKRDYLRLFGTTGYCAACTKVIPA 127 (204)
Q Consensus 79 f~C~~C~~~L~~~~~~~~~-~~g~~~C~~cy~~~~~~~~~C~~C~~~I~~ 127 (204)
+.|..|...+. ..... .-|+.||..|..+.+.....|..|...+..
T Consensus 16 ~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 16 LMCVLCGGYFI---DATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp TBCTTTSSBCS---SEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CCCccCChHHh---CcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 56777777665 34454 677788888876554322267777776643
No 100
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=77.19 E-value=4.4 Score=25.97 Aligned_cols=31 Identities=23% Similarity=0.493 Sum_probs=18.5
Q ss_pred cccccCCccCCCceEEecCCcccccCccccccCCccccC
Q psy7480 117 YCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCV 155 (204)
Q Consensus 117 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~ 155 (204)
.|..|++++ .++.+=|.. =|.|..|+..++.
T Consensus 33 fCPeCgq~L----e~lkACGA~----~yFC~~C~~LiSk 63 (81)
T 2jrp_A 33 LCPDCRQPL----QVLKACGAV----DYFCQNGHGLISK 63 (81)
T ss_dssp ECSSSCSCC----CEEEETTEE----EECCTTTTCCCCT
T ss_pred cCcchhhHH----HHHHhcCCc----CeeeccCCCEeec
Confidence 677777766 234444432 3568888887743
No 101
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=76.90 E-value=0.97 Score=28.48 Aligned_cols=31 Identities=19% Similarity=0.447 Sum_probs=17.5
Q ss_pred eeCCeecccccccccccC------cccccccCCccCC
Q psy7480 97 QKANLILCKRDYLRLFGT------TGYCAACTKVIPA 127 (204)
Q Consensus 97 ~~~g~~~C~~cy~~~~~~------~~~C~~C~~~I~~ 127 (204)
..-|+.||..|..+.+.. ...|..|...+..
T Consensus 35 ~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 35 ADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred CCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 345555666665443211 1278888887754
No 102
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=76.87 E-value=2 Score=27.47 Aligned_cols=51 Identities=16% Similarity=0.409 Sum_probs=35.7
Q ss_pred CCCccccccccccccceeEeecCccccccCccccCCCcccCcCCCeEEeeCCeecccc
Q psy7480 49 GGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKR 106 (204)
Q Consensus 49 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~~~g~~~C~~ 106 (204)
...-.|..|++.+.+.-.+.--...-|+-||.|+. ..|.. ....+.+||..
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr--~sIk~-----q~~~~EvyCPS 63 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSR--ESIKA-----QGATGEVYCPS 63 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHH--HHHHH-----HHSSSCCCCTT
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccH--HHHHh-----cCCCCcEECCC
Confidence 44567999999999985566777888999999863 23321 12456777753
No 103
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=76.74 E-value=2.3 Score=28.30 Aligned_cols=49 Identities=10% Similarity=0.021 Sum_probs=35.8
Q ss_pred ccCccccCCCcccCcCCCeEEeeCCeecccccccccccCcccccccCCccCC
Q psy7480 76 EDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 127 (204)
Q Consensus 76 ~~Cf~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~~~~~C~~C~~~I~~ 127 (204)
+.-|.|..|...+. ..+....|..||..|..+.+.....|..|+.++..
T Consensus 27 p~~~~CpI~~~~m~---dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMT---DPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCS---SEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCccc---CCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 55688888888876 56777789999998876554333478888887754
No 104
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=76.60 E-value=1 Score=28.04 Aligned_cols=30 Identities=13% Similarity=0.190 Sum_probs=16.0
Q ss_pred eCCeecccccccccccC-------cccccccCCccCC
Q psy7480 98 KANLILCKRDYLRLFGT-------TGYCAACTKVIPA 127 (204)
Q Consensus 98 ~~g~~~C~~cy~~~~~~-------~~~C~~C~~~I~~ 127 (204)
.-|+.||..|..+.+.. ...|..|...+..
T Consensus 29 ~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 29 DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 34455555555443221 1268888877754
No 105
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=76.21 E-value=1.4 Score=29.90 Aligned_cols=45 Identities=22% Similarity=0.432 Sum_probs=26.3
Q ss_pred ccccCCCcccCcCCCeEEeeCCeecccccccccccC-cccccccCCccC
Q psy7480 79 LKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGT-TGYCAACTKVIP 126 (204)
Q Consensus 79 f~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~~-~~~C~~C~~~I~ 126 (204)
|.|..|...+. ......-|+.||..|..+.+.. ...|..|...+.
T Consensus 16 ~~C~iC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 16 CQCGICMEILV---EPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HBCTTTCSBCS---SCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCccCCcccC---ceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 56666666654 2344466777777777654421 125777776663
No 106
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.85 E-value=1.5 Score=26.98 Aligned_cols=29 Identities=7% Similarity=0.290 Sum_probs=16.5
Q ss_pred CCeecccccccccccCcccccccCCccCC
Q psy7480 99 ANLILCKRDYLRLFGTTGYCAACTKVIPA 127 (204)
Q Consensus 99 ~g~~~C~~cy~~~~~~~~~C~~C~~~I~~ 127 (204)
-+..||..|..+.+.....|..|...|..
T Consensus 36 C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 36 CKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp TTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 34556666655433222268888887754
No 107
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=75.78 E-value=1.6 Score=29.88 Aligned_cols=72 Identities=17% Similarity=0.414 Sum_probs=35.1
Q ss_pred cccccccccccceeEeecCccccccCccccCCCcccCcC----CCeEEeeCCeecccccccccccCcccccccCCccCC
Q psy7480 53 ECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV----GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 127 (204)
Q Consensus 53 ~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~----~~~~~~~~g~~~C~~cy~~~~~~~~~C~~C~~~I~~ 127 (204)
.|..|.+.+....+... .....=+.|..|...+... .......-|..||..|..+.......|..|...|..
T Consensus 50 ~CP~Cr~~~~~~~l~~l---~i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 50 TCPTCRKKINHKRYHPI---YIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp BCTTTCCBCTTTCEEEC---BCSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCcCcccccccc---ccCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 56677766665532211 1122334566666555310 011334456666666665433222256666666643
No 108
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.54 E-value=0.9 Score=28.63 Aligned_cols=30 Identities=10% Similarity=0.233 Sum_probs=18.2
Q ss_pred eCCeecccccccccccC------cccccccCCccCC
Q psy7480 98 KANLILCKRDYLRLFGT------TGYCAACTKVIPA 127 (204)
Q Consensus 98 ~~g~~~C~~cy~~~~~~------~~~C~~C~~~I~~ 127 (204)
.-|+.||..|..+.+.. ...|..|...+..
T Consensus 36 ~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 36 DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 45566677776543211 1278888888764
No 109
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=75.46 E-value=1.2 Score=25.56 Aligned_cols=29 Identities=14% Similarity=0.284 Sum_probs=15.4
Q ss_pred eCCeecccccccccccCcccccccCCccC
Q psy7480 98 KANLILCKRDYLRLFGTTGYCAACTKVIP 126 (204)
Q Consensus 98 ~~g~~~C~~cy~~~~~~~~~C~~C~~~I~ 126 (204)
.-+..||..|..+.+.....|..|...|.
T Consensus 26 ~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 26 PCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp TTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 34555666665543322126777776664
No 110
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=74.71 E-value=1.3 Score=26.87 Aligned_cols=27 Identities=15% Similarity=0.124 Sum_probs=13.8
Q ss_pred CeecccccccccccCcccccccCCccC
Q psy7480 100 NLILCKRDYLRLFGTTGYCAACTKVIP 126 (204)
Q Consensus 100 g~~~C~~cy~~~~~~~~~C~~C~~~I~ 126 (204)
|..||..|..+.+.....|..|...|.
T Consensus 36 ~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 36 MHLFHQVCVDQWLITNKKCPICRVDIE 62 (69)
T ss_dssp SCEEEHHHHHHHHHHCSBCTTTCSBSC
T ss_pred CCHHHHHHHHHHHHcCCCCcCcCcccc
Confidence 344555555433221126777777664
No 111
>2eqg_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=74.22 E-value=1 Score=25.22 Aligned_cols=19 Identities=32% Similarity=0.616 Sum_probs=14.9
Q ss_pred eEEE-eCCeeecHHHHHHHh
Q psy7480 158 RFYL-CDNKILCEYDYEERQ 176 (204)
Q Consensus 158 ~~~~-~~~~~~C~~c~~~~~ 176 (204)
.|++ .+-+|||.+||+++.
T Consensus 20 pF~mSVnTQP~CHEC~errq 39 (49)
T 2eqg_A 20 PFFMSVNTQPLCHECSERRQ 39 (49)
T ss_dssp CSBCCTTTTTSCHHHHHHHH
T ss_pred CeEEEecCccchHHHHHHHh
Confidence 4444 689999999999763
No 112
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.43 E-value=2.3 Score=26.79 Aligned_cols=18 Identities=17% Similarity=0.398 Sum_probs=13.6
Q ss_pred CCCCCccccccccccccc
Q psy7480 47 ASGGLKECASCGKRITER 64 (204)
Q Consensus 47 ~~~~~~~C~~C~~~I~~~ 64 (204)
.......|+.|...|...
T Consensus 11 y~~~i~~C~IC~~~i~~g 28 (74)
T 2ct0_A 11 YPDAVKICNICHSLLIQG 28 (74)
T ss_dssp CSSSSCBCSSSCCBCSSS
T ss_pred ccCCCCcCcchhhHcccC
Confidence 455677899999988754
No 113
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.37 E-value=1.1 Score=27.34 Aligned_cols=45 Identities=13% Similarity=0.265 Sum_probs=26.0
Q ss_pred ccccCCCcccCcCCCeEEeeCCeecccccccccccCcccccccCCccCC
Q psy7480 79 LKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 127 (204)
Q Consensus 79 f~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~~~~~C~~C~~~I~~ 127 (204)
+.|..|...+. . ....-|..||..|..+.+.....|..|...|..
T Consensus 16 ~~C~IC~~~~~---~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 16 EECCICMDGRA---D-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTG 60 (70)
T ss_dssp CCCSSSCCSCC---S-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTC
T ss_pred CCCeeCCcCcc---C-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccC
Confidence 34555544443 1 344556667777766544322378888888764
No 114
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=72.91 E-value=2.3 Score=28.17 Aligned_cols=49 Identities=4% Similarity=-0.105 Sum_probs=33.2
Q ss_pred ccCccccCCCcccCcCCCeEEeeCC-eecccccccccccCcccccccCCccCC
Q psy7480 76 EDCLKCGCCDCRLGEVGSTLYQKAN-LILCKRDYLRLFGTTGYCAACTKVIPA 127 (204)
Q Consensus 76 ~~Cf~C~~C~~~L~~~~~~~~~~~g-~~~C~~cy~~~~~~~~~C~~C~~~I~~ 127 (204)
+.-|.|..|...+. ..+....| ..||..|..+.+.....|..|+.++..
T Consensus 20 p~~~~CpI~~~~m~---dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMC---DPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cHhcCCcCcccccc---CCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 44578888877775 45667777 888888876554322367777777654
No 115
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=72.66 E-value=1.2 Score=27.59 Aligned_cols=46 Identities=13% Similarity=0.222 Sum_probs=26.2
Q ss_pred ccccCCCcccCcCCCeEEee-CCeecccccccccccCc--ccccccCCccCC
Q psy7480 79 LKCGCCDCRLGEVGSTLYQK-ANLILCKRDYLRLFGTT--GYCAACTKVIPA 127 (204)
Q Consensus 79 f~C~~C~~~L~~~~~~~~~~-~g~~~C~~cy~~~~~~~--~~C~~C~~~I~~ 127 (204)
+.|..|...+. ...... -|+.||..|..+.+... ..|..|.+.+..
T Consensus 16 ~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 16 LLCLICKDIMT---DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp GSCSSSCCCCT---TCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCcCCChHHh---CCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 45555655554 233444 46777777776544210 268888887543
No 116
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=72.47 E-value=1.4 Score=33.51 Aligned_cols=30 Identities=23% Similarity=0.422 Sum_probs=23.9
Q ss_pred cccccCCccccCCCeEEEeCCeeecHHHHHH
Q psy7480 144 FACQQCNHRFCVGDRFYLCDNKILCEYDYEE 174 (204)
Q Consensus 144 f~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~ 174 (204)
..|..|+... ....-...+|+++|..|+.+
T Consensus 173 ~~C~~CGE~~-~~~~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 173 VRCDVCGEYT-YEADAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp EECTTTCCEE-EGGGCEEETTEEECHHHHHC
T ss_pred eECCCCCCch-hhcceeeeCCcEEChhhhcc
Confidence 4699999988 44455667999999999875
No 117
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=71.87 E-value=1.6 Score=29.94 Aligned_cols=46 Identities=22% Similarity=0.389 Sum_probs=30.8
Q ss_pred ccccCCCcccCcCCCeEEeeCCeecccccccccccC-cccccccCCccCC
Q psy7480 79 LKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGT-TGYCAACTKVIPA 127 (204)
Q Consensus 79 f~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~~-~~~C~~C~~~I~~ 127 (204)
+.|..|...+. ......-|+.||..|....+.. ...|..|...+..
T Consensus 53 ~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 53 FQCICCQELVF---RPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp TBCTTTSSBCS---SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCcCChHHc---CcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 57777877765 3455677888888887655421 1268888887754
No 118
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=71.52 E-value=1.3 Score=29.36 Aligned_cols=46 Identities=15% Similarity=0.349 Sum_probs=29.1
Q ss_pred ccccCCCcccCcCCCeEE-eeCCeecccccccccccCc-ccccccCCccCC
Q psy7480 79 LKCGCCDCRLGEVGSTLY-QKANLILCKRDYLRLFGTT-GYCAACTKVIPA 127 (204)
Q Consensus 79 f~C~~C~~~L~~~~~~~~-~~~g~~~C~~cy~~~~~~~-~~C~~C~~~I~~ 127 (204)
+.|..|...+. .... ..-|..||..|..+.+... ..|..|..++..
T Consensus 23 ~~C~IC~~~~~---~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 23 FRCFICMEKLR---DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp TBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCccCCcccc---CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 56777777765 3444 5667788888876544321 267777777743
No 119
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=71.20 E-value=1.8 Score=25.23 Aligned_cols=42 Identities=21% Similarity=0.397 Sum_probs=24.7
Q ss_pred ccccCCCcccCcCCCeEEeeCCeecccccccccccCcccccccCCccC
Q psy7480 79 LKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIP 126 (204)
Q Consensus 79 f~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~~~~~C~~C~~~I~ 126 (204)
+.|..|...+.. .....-|..||..|..+. .. .|..|...+.
T Consensus 7 ~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~-~~--~CP~Cr~~~~ 48 (56)
T 1bor_A 7 LRCQQCQAEAKC---PKLLPCLHTLCSGCLEAS-GM--QCPICQAPWP 48 (56)
T ss_dssp SSCSSSCSSCBC---CSCSTTSCCSBTTTCSSS-SS--SCSSCCSSSS
T ss_pred CCceEeCCccCC---eEEcCCCCcccHHHHccC-CC--CCCcCCcEee
Confidence 456666555542 233445666777776552 22 7888887774
No 120
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=70.91 E-value=1.3 Score=28.42 Aligned_cols=49 Identities=8% Similarity=0.025 Sum_probs=34.0
Q ss_pred ccCccccCCCcccCcCCCeEEeeCCeecccccccccccCcccccccCCccCC
Q psy7480 76 EDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 127 (204)
Q Consensus 76 ~~Cf~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~~~~~C~~C~~~I~~ 127 (204)
+.-|.|..|...+. ..+....|..||..|..+.+.....|..|+.++..
T Consensus 12 p~~~~CpI~~~~m~---dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMT---DPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhc---CCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 44578888888876 45667788889988866544322378888877754
No 121
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=70.20 E-value=6.7 Score=26.02 Aligned_cols=31 Identities=23% Similarity=0.497 Sum_probs=20.4
Q ss_pred cccccCCccCCCceEEecCCcccccCccccccCCccccC
Q psy7480 117 YCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCV 155 (204)
Q Consensus 117 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~ 155 (204)
.|..|++++ +++.|-|.. =|.|..|+..++.
T Consensus 63 ~CPdC~q~L----evLkACGAv----dYFC~~chgLiSK 93 (101)
T 2jne_A 63 LCPDCHQPL----QVLKACGAV----DYFCQHGHGLISK 93 (101)
T ss_dssp ECTTTCSBC----EEEEETTEE----EEEETTTTEEECT
T ss_pred cCcchhhHH----HHHHHhcCc----chhhccCCceeec
Confidence 788888877 556665521 2468888887743
No 122
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=70.17 E-value=1.3 Score=30.32 Aligned_cols=46 Identities=15% Similarity=0.368 Sum_probs=29.8
Q ss_pred ccccCCCcccCcCCCeEEeeCCeecccccccccccCcc-cccccCCccCC
Q psy7480 79 LKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTG-YCAACTKVIPA 127 (204)
Q Consensus 79 f~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~~~~-~C~~C~~~I~~ 127 (204)
+.|..|...+. ......-|..||..|..+.+.... .|..|..+|..
T Consensus 19 ~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 19 YECPICLMALR---EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp GBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCcCChhhc---CeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 56677776665 334556777888888765443211 78888888754
No 123
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=69.99 E-value=2.8 Score=24.84 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=21.1
Q ss_pred ccccCCccccCCCeEEEeCCeeec-HHHHHH
Q psy7480 145 ACQQCNHRFCVGDRFYLCDNKILC-EYDYEE 174 (204)
Q Consensus 145 ~C~~C~~~l~~~~~~~~~~~~~~C-~~c~~~ 174 (204)
.|..|+..+ ....-+..+|+.|| +.|...
T Consensus 9 aC~~C~c~V-s~~eai~~dGK~YCSe~Ca~g 38 (55)
T 1jjd_A 9 ACEPCLCNV-DPSKAIDRNGLYYCSEACADG 38 (55)
T ss_dssp SSTTCCCCB-CTTTSEESSSCEESSHHHHHT
T ss_pred cCCCCeeEe-chHHhhhcCCeEEehHHHHcc
Confidence 478888888 44456668999998 777653
No 124
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=69.55 E-value=1.1 Score=26.55 Aligned_cols=49 Identities=16% Similarity=0.388 Sum_probs=27.8
Q ss_pred ccccCCCcccCcC----CCeEEeeCCeecccccccccccCcccccccCCccCC
Q psy7480 79 LKCGCCDCRLGEV----GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 127 (204)
Q Consensus 79 f~C~~C~~~L~~~----~~~~~~~~g~~~C~~cy~~~~~~~~~C~~C~~~I~~ 127 (204)
+.|..|...+... .......-|..||..|..+.+.....|..|...+..
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 3455555554310 111345567777888876544322378888888764
No 125
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.46 E-value=7.4 Score=23.53 Aligned_cols=39 Identities=23% Similarity=0.497 Sum_probs=27.8
Q ss_pred cCCcccccCccccccCCcc-ccCCCeEEEe--CCeeecHHHHHHH
Q psy7480 134 AKNNVYHLECFACQQCNHR-FCVGDRFYLC--DNKILCEYDYEER 175 (204)
Q Consensus 134 ~~~~~~H~~Cf~C~~C~~~-l~~~~~~~~~--~~~~~C~~c~~~~ 175 (204)
+.....|+ ..|..|++. | .|.+|.-. .+--+|..||...
T Consensus 4 ~~~~v~H~--~~Cd~C~~~pi-~G~RykC~~C~d~DLC~~C~~~g 45 (63)
T 2e5r_A 4 GSSGVFHP--VECSYCHSESM-MGFRYRCQQCHNYQLCQDCFWRG 45 (63)
T ss_dssp CSSSCCSC--SCCSSSCCCSS-CSCEEEESSCSSCEECHHHHHHC
T ss_pred CcCCceeC--CCCcCCCCcce-ecceEEecCCCCchhHHHHHhCC
Confidence 34556777 788888875 6 67777543 3567999999864
No 126
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=67.91 E-value=0.89 Score=27.71 Aligned_cols=31 Identities=16% Similarity=0.416 Sum_probs=18.8
Q ss_pred eeCCeecccccccccccCcccccccCCccCC
Q psy7480 97 QKANLILCKRDYLRLFGTTGYCAACTKVIPA 127 (204)
Q Consensus 97 ~~~g~~~C~~cy~~~~~~~~~C~~C~~~I~~ 127 (204)
..-|..||..|..+.+.....|..|...+..
T Consensus 33 ~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 33 TECGHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp CTTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 3455667777765543222378888887754
No 127
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.53 E-value=5.2 Score=24.52 Aligned_cols=29 Identities=10% Similarity=0.133 Sum_probs=14.2
Q ss_pred CCeecccccccccccCcccccccCCccCC
Q psy7480 99 ANLILCKRDYLRLFGTTGYCAACTKVIPA 127 (204)
Q Consensus 99 ~g~~~C~~cy~~~~~~~~~C~~C~~~I~~ 127 (204)
-+..||..|..+.+.....|..|...|..
T Consensus 44 C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 44 CNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp TTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 34445555544332211267777766643
No 128
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.34 E-value=1.9 Score=27.30 Aligned_cols=33 Identities=15% Similarity=0.393 Sum_probs=20.2
Q ss_pred EEeeCCeecccccccccccC---cccccccCCccCC
Q psy7480 95 LYQKANLILCKRDYLRLFGT---TGYCAACTKVIPA 127 (204)
Q Consensus 95 ~~~~~g~~~C~~cy~~~~~~---~~~C~~C~~~I~~ 127 (204)
....-|+.||..|..+.+.. ...|..|.+.+..
T Consensus 33 ~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 33 KLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp EECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred EECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 33455667777777654321 1278888887754
No 129
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=67.13 E-value=1.8 Score=28.95 Aligned_cols=46 Identities=28% Similarity=0.547 Sum_probs=27.7
Q ss_pred ccccCCCcccCcCCCeEEeeCCeecccccccccccCc---ccccccCCccCC
Q psy7480 79 LKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTT---GYCAACTKVIPA 127 (204)
Q Consensus 79 f~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~~~---~~C~~C~~~I~~ 127 (204)
+.|..|...+.. .....-|+.||..|..+.+... ..|..|...+..
T Consensus 22 ~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 22 LECPICLELIKE---PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp TSCSSSCCCCSS---CCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCcccChhhcC---eEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 466777666642 2334567778888876554321 157777777654
No 130
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=67.03 E-value=2.8 Score=27.06 Aligned_cols=29 Identities=17% Similarity=0.345 Sum_probs=16.4
Q ss_pred eCCeecccccccccccCcccccccCCccC
Q psy7480 98 KANLILCKRDYLRLFGTTGYCAACTKVIP 126 (204)
Q Consensus 98 ~~g~~~C~~cy~~~~~~~~~C~~C~~~I~ 126 (204)
.-|..||..|..+.+.....|..|...|.
T Consensus 60 ~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 60 PCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp TTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred CCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 34555666665443322236888877764
No 131
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=66.97 E-value=2.2 Score=30.89 Aligned_cols=47 Identities=19% Similarity=0.352 Sum_probs=33.3
Q ss_pred CccccCCCcccCcCCCeEEe-eCCeecccccccccccC-cccccccCCccCC
Q psy7480 78 CLKCGCCDCRLGEVGSTLYQ-KANLILCKRDYLRLFGT-TGYCAACTKVIPA 127 (204)
Q Consensus 78 Cf~C~~C~~~L~~~~~~~~~-~~g~~~C~~cy~~~~~~-~~~C~~C~~~I~~ 127 (204)
-+.|..|...+. ..... .-|+.||..|..+.+.. ...|..|...|..
T Consensus 54 ~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDMLK---NTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBCS---SEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCcccChHhh---CcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 367888877775 34444 77889999998765432 2379999998854
No 132
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.78 E-value=0.85 Score=27.53 Aligned_cols=30 Identities=17% Similarity=0.439 Sum_probs=17.5
Q ss_pred eeCCeecccccccccccCcccccccCCccC
Q psy7480 97 QKANLILCKRDYLRLFGTTGYCAACTKVIP 126 (204)
Q Consensus 97 ~~~g~~~C~~cy~~~~~~~~~C~~C~~~I~ 126 (204)
..-|..||..|..+.+.....|..|...|.
T Consensus 38 ~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 38 TECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp CSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 344566677776554332236888877764
No 133
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=66.27 E-value=4.1 Score=25.19 Aligned_cols=42 Identities=21% Similarity=0.370 Sum_probs=30.1
Q ss_pred ccccCCCcccCcCCCeEEeeCCee-cccccccccccCcccccccCCccCC
Q psy7480 79 LKCGCCDCRLGEVGSTLYQKANLI-LCKRDYLRLFGTTGYCAACTKVIPA 127 (204)
Q Consensus 79 f~C~~C~~~L~~~~~~~~~~~g~~-~C~~cy~~~~~~~~~C~~C~~~I~~ 127 (204)
+.|..|...+. ...+..-|+. +|..|.... . .|..|..+|..
T Consensus 25 ~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~~--~--~CP~Cr~~i~~ 67 (74)
T 4ic3_A 25 KLCKICMDRNI---AIVFVPCGHLVTCKQCAEAV--D--KCPMCYTVITF 67 (74)
T ss_dssp TBCTTTSSSBC---CEEEETTCCBCCCHHHHTTC--S--BCTTTCCBCSE
T ss_pred CCCCCCCCCCC---CEEEcCCCChhHHHHhhhcC--c--cCCCcCcCccC
Confidence 35666766654 3456677887 899997765 3 89999998853
No 134
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=65.78 E-value=2 Score=29.08 Aligned_cols=46 Identities=20% Similarity=0.509 Sum_probs=31.8
Q ss_pred ccccCCCcccCcCCCeEEeeCCeecccccccccccC-cccccccCCccCC
Q psy7480 79 LKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGT-TGYCAACTKVIPA 127 (204)
Q Consensus 79 f~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~~-~~~C~~C~~~I~~ 127 (204)
+.|..|...+. ......-|..||..|..+.+.. ...|..|..++..
T Consensus 24 ~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 24 ISCQICEHILA---DPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp TBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCcHhc---CcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 56777777765 3455677888898887654421 1279999988864
No 135
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=64.64 E-value=2.5 Score=30.27 Aligned_cols=46 Identities=22% Similarity=0.414 Sum_probs=29.4
Q ss_pred ccccCCCcccCcCCCeEEeeCCeecccccccccccCc-ccccccCCccCC
Q psy7480 79 LKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTT-GYCAACTKVIPA 127 (204)
Q Consensus 79 f~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~~~-~~C~~C~~~I~~ 127 (204)
+.|..|...+. ......-|..||..|....+... ..|..|...+..
T Consensus 79 ~~C~IC~~~~~---~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 79 FMCVCCQELVY---QPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp TBCTTTSSBCS---SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CEeecCChhhc---CCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 57777777765 34556777788888876554321 157777776653
No 136
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=64.53 E-value=3 Score=25.04 Aligned_cols=46 Identities=13% Similarity=0.256 Sum_probs=24.2
Q ss_pred cccCCCcccCcCCCeEEeeCCeecccccccccccCcccccccCCccCC
Q psy7480 80 KCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 127 (204)
Q Consensus 80 ~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~~~~~C~~C~~~I~~ 127 (204)
.|..|...+.. ......-|..||..|..+.+.....|..|...+..
T Consensus 7 ~C~IC~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 7 RCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCeeCCccccC--CcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 34445444431 12334456667777765433222268888877743
No 137
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=63.28 E-value=1.8 Score=27.90 Aligned_cols=44 Identities=14% Similarity=0.225 Sum_probs=27.6
Q ss_pred ccccCCCcccCcCCCeEEee-CCeecccccccccccC--cccccccCCcc
Q psy7480 79 LKCGCCDCRLGEVGSTLYQK-ANLILCKRDYLRLFGT--TGYCAACTKVI 125 (204)
Q Consensus 79 f~C~~C~~~L~~~~~~~~~~-~g~~~C~~cy~~~~~~--~~~C~~C~~~I 125 (204)
|.|..|...+. ...... -|+.||..|....+.. ...|..|...+
T Consensus 14 ~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 14 LLCLICKDIMT---DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp TEETTTTEECS---SCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CCCCCCChhhc---CceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 56777776665 334455 4788888887654421 12688887775
No 138
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=62.95 E-value=4.2 Score=27.19 Aligned_cols=64 Identities=14% Similarity=0.424 Sum_probs=38.1
Q ss_pred ccCCCcccCcCCCeEEeeCCeecccccccccc-cCcccccccCCccCCCceEEecCCcccccCccccc---cCCccc
Q psy7480 81 CGCCDCRLGEVGSTLYQKANLILCKRDYLRLF-GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQ---QCNHRF 153 (204)
Q Consensus 81 C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~-~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~---~C~~~l 153 (204)
|..|+.++... .-...-+.++|.+|+.... .....|..|..+|.--+.. ..|.. |.|. .|.+.+
T Consensus 4 C~~C~~Pi~iy--gRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~~--~~~~i-----f~C~~~~~Ckrty 71 (101)
T 3vk6_A 4 CDKCGLPIKVY--GRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQC--TRGSL-----FMCSIVQGCKRTY 71 (101)
T ss_dssp CTTTCSBCSEE--EEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEEE--EGGGC-----CCCCCCCCCCCCC
T ss_pred cCccCCCeEEE--eeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeEEe--ccCCE-----EECCCCCCHHHHh
Confidence 67788887521 1245567789999986521 1112799999999543322 22444 5565 465554
No 139
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=62.04 E-value=2.2 Score=30.99 Aligned_cols=46 Identities=13% Similarity=0.310 Sum_probs=25.6
Q ss_pred ccccCCCcccCcCCCeEEeeCCeecccccccccccCc-ccccccCCccCC
Q psy7480 79 LKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTT-GYCAACTKVIPA 127 (204)
Q Consensus 79 f~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~~~-~~C~~C~~~I~~ 127 (204)
|.|..|...+. ..+...-|..||..|..+.+... ..|..|..+|..
T Consensus 19 ~~C~IC~~~~~---~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 19 YECPICLMALR---EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp GBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCChhhc---CcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 45666666654 33445566667777765543211 157677666643
No 140
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=55.64 E-value=2.4 Score=30.07 Aligned_cols=45 Identities=18% Similarity=0.336 Sum_probs=33.2
Q ss_pred ccccCCCcccCcCCCeEEeeCCeecccccccccccCc-ccccccCCccC
Q psy7480 79 LKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTT-GYCAACTKVIP 126 (204)
Q Consensus 79 f~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~~~-~~C~~C~~~I~ 126 (204)
|.|..|...+. ..+...-|..||..|..+.+... ..|..|..+|.
T Consensus 32 ~~C~IC~~~~~---~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 32 YLCSACRNVLR---RPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GBCTTTCSBCS---SEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred cCCCCCChhhc---CcEECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 67888888876 44667788999999987755421 27999988763
No 141
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=54.36 E-value=17 Score=24.51 Aligned_cols=52 Identities=21% Similarity=0.352 Sum_probs=32.1
Q ss_pred CCCccccccccccccceeEeec----CccccccCccccCCCcccCcCCCeEEeeCCeecccccccccccCcccccccCCc
Q psy7480 49 GGLKECASCGKRITERFLLKAL----DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKV 124 (204)
Q Consensus 49 ~~~~~C~~C~~~I~~~~~~~~~----~~~~H~~Cf~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~~~~~C~~C~~~ 124 (204)
.....|..|+. ++.+|.-. .+.||..|+. |.. ...|.-||..| .|..|++.
T Consensus 13 ~~~~~C~~C~~---~G~ll~CD~~~Cp~~fH~~Cl~-------L~~------~P~g~W~Cp~c---------~C~~C~k~ 67 (107)
T 4gne_A 13 MHEDYCFQCGD---GGELVMCDKKDCPKAYHLLCLN-------LTQ------PPYGKWECPWH---------QCDECSSA 67 (107)
T ss_dssp SSCSSCTTTCC---CSEEEECCSTTCCCEECTGGGT-------CSS------CCSSCCCCGGG---------BCTTTCSB
T ss_pred CCCCCCCcCCC---CCcEeEECCCCCCcccccccCc-------CCc------CCCCCEECCCC---------CCCcCCCC
Confidence 34456888883 33344333 3578988763 331 23567788888 78888875
Q ss_pred c
Q psy7480 125 I 125 (204)
Q Consensus 125 I 125 (204)
.
T Consensus 68 ~ 68 (107)
T 4gne_A 68 A 68 (107)
T ss_dssp C
T ss_pred C
Confidence 4
No 142
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=53.99 E-value=5.4 Score=30.96 Aligned_cols=50 Identities=6% Similarity=-0.023 Sum_probs=36.6
Q ss_pred cccCccccCCCcccCcCCCeEEeeCCeecccccccccccC-cccccccCCccCC
Q psy7480 75 HEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGT-TGYCAACTKVIPA 127 (204)
Q Consensus 75 H~~Cf~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~~-~~~C~~C~~~I~~ 127 (204)
-+.-|.|..|...+. .++....|..||..|..+.+.. ...|..|+.++..
T Consensus 205 ~~~~~~c~i~~~~~~---dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 205 IPDYLCGKISFELMR---EPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CCSTTBCTTTCSBCS---SEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CCcccCCcCcCCHhc---CCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 456788999988886 5677789999999997654421 0148899888854
No 143
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.61 E-value=4.2 Score=23.96 Aligned_cols=14 Identities=7% Similarity=0.126 Sum_probs=7.3
Q ss_pred eeCCeecccccccc
Q psy7480 97 QKANLILCKRDYLR 110 (204)
Q Consensus 97 ~~~g~~~C~~cy~~ 110 (204)
..-|..||..|..+
T Consensus 36 ~~CgH~fC~~Ci~~ 49 (63)
T 2ysj_A 36 IDCGHNFCLKCITQ 49 (63)
T ss_dssp CTTSSEECHHHHHH
T ss_pred eCCCCcchHHHHHH
Confidence 34455556555544
No 144
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=52.17 E-value=19 Score=24.07 Aligned_cols=94 Identities=16% Similarity=0.187 Sum_probs=51.0
Q ss_pred CCccccccccccccceeEe--ecCccccccCccccCCCcccCcCCCeEEeeCCeecccccccccccCcccccccCCccCC
Q psy7480 50 GLKECASCGKRITERFLLK--ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 127 (204)
Q Consensus 50 ~~~~C~~C~~~I~~~~~~~--~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~~~~~C~~C~~~I~~ 127 (204)
....|..|+..-....++. .=++.||..|+.=. +.. ...+.-+|..|. .|..|++.-..
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~-----~~~------~~~~~W~C~~C~--------~C~~C~~~~~~ 66 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIA-----VTP------LKRAGWQCPECK--------VCQNCKQSGED 66 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCC-----CCT------TTSTTCCCTTTC--------CCTTTCCCSCC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCc-----ccc------ccccCccCCcCC--------cccccCccCCC
Confidence 4567888876532221222 23578898886422 110 123556777772 47888876532
Q ss_pred CceEEe--cCCcccccCccccccCCccccCCCeEEEeCCeeecHHHHH
Q psy7480 128 FEMVMR--AKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173 (204)
Q Consensus 128 ~~~~~~--~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~ 173 (204)
. .++. .=++.||..|..- +| .. +..+.-+|..|..
T Consensus 67 ~-~ll~Cd~C~~~yH~~Cl~p-----pl-~~----~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 67 S-KMLVCDTCDKGYHTFCLQP-----VM-KS----VPTNGWKCKNCRI 103 (111)
T ss_dssp T-TEEECSSSCCEEEGGGSSS-----CC-SS----CCSSCCCCHHHHC
T ss_pred C-CeeECCCCCcHHhHHhcCC-----cc-cc----CCCCCcCCcCCcC
Confidence 2 2332 3366789887652 33 11 1235678888743
No 145
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=52.14 E-value=5.9 Score=23.64 Aligned_cols=47 Identities=13% Similarity=0.077 Sum_probs=34.6
Q ss_pred ccccCCCcccCcCCCeEEe-eCCeecccccccccccCcccccccCCccCCC
Q psy7480 79 LKCGCCDCRLGEVGSTLYQ-KANLILCKRDYLRLFGTTGYCAACTKVIPAF 128 (204)
Q Consensus 79 f~C~~C~~~L~~~~~~~~~-~~g~~~C~~cy~~~~~~~~~C~~C~~~I~~~ 128 (204)
|.|..+...+. ..+.. .+|..|+..+..+.+...++|...++++...
T Consensus 4 ~~CpIs~~~m~---dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 4 MLCAISGKVPR---RPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE 51 (61)
T ss_dssp CCCTTTCSCCS---SEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred EEecCCCCCCC---CCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence 67888888776 45666 7999999988776554333788888888653
No 146
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=51.33 E-value=5.6 Score=30.89 Aligned_cols=11 Identities=27% Similarity=0.776 Sum_probs=8.5
Q ss_pred cccccCCccCC
Q psy7480 117 YCAACTKVIPA 127 (204)
Q Consensus 117 ~C~~C~~~I~~ 127 (204)
.|..|+.....
T Consensus 219 ~CP~C~~~W~~ 229 (238)
T 3nw0_A 219 RCPHCNDYWPH 229 (238)
T ss_dssp BCTTTCCBCCS
T ss_pred CCCCCCCCCCC
Confidence 78888888654
No 147
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=51.13 E-value=7.3 Score=23.06 Aligned_cols=50 Identities=18% Similarity=0.357 Sum_probs=29.7
Q ss_pred ccccCCCc-ccCcCCCe-EEeeCCeecccccccccccC-cccccccCCccCCC
Q psy7480 79 LKCGCCDC-RLGEVGST-LYQKANLILCKRDYLRLFGT-TGYCAACTKVIPAF 128 (204)
Q Consensus 79 f~C~~C~~-~L~~~~~~-~~~~~g~~~C~~cy~~~~~~-~~~C~~C~~~I~~~ 128 (204)
+.|..|.. .+...... ....-|..||..|..+.+.. ...|..|++.+...
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 45666666 44321111 23467788888887765321 12799999988653
No 148
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.91 E-value=5 Score=24.80 Aligned_cols=41 Identities=22% Similarity=0.396 Sum_probs=27.6
Q ss_pred cccCCCcccCcCCCeEEeeCCee-cccccccccccCcccccccCCccCC
Q psy7480 80 KCGCCDCRLGEVGSTLYQKANLI-LCKRDYLRLFGTTGYCAACTKVIPA 127 (204)
Q Consensus 80 ~C~~C~~~L~~~~~~~~~~~g~~-~C~~cy~~~~~~~~~C~~C~~~I~~ 127 (204)
.|..|...+. ...+..-|+. +|..|..+. . .|..|..+|..
T Consensus 27 ~C~IC~~~~~---~~~~~pCgH~~~C~~C~~~~--~--~CP~Cr~~i~~ 68 (75)
T 2ecg_A 27 LCKICMDRNI---AIVFVPCGHLVTCKQCAEAV--D--KCPMCYTVITF 68 (75)
T ss_dssp SCSSSCSSCC---CBCCSSSCCCCBCHHHHHHC--S--BCTTTCCBCCC
T ss_pred CCCcCCCCCC---CEEEecCCCHHHHHHHhhCC--C--CCccCCceecC
Confidence 5666655554 2344566777 888888643 2 89999998854
No 149
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=49.32 E-value=6.7 Score=26.40 Aligned_cols=29 Identities=31% Similarity=0.731 Sum_probs=17.7
Q ss_pred cccccCCccCCCceEEe----c---C---CcccccCccc
Q psy7480 117 YCAACTKVIPAFEMVMR----A---K---NNVYHLECFA 145 (204)
Q Consensus 117 ~C~~C~~~I~~~~~~~~----~---~---~~~~H~~Cf~ 145 (204)
.|..|+..|.-++.-|. . . ..-||..||.
T Consensus 27 ~Ck~C~~kI~KgelRig~~v~~~~~~g~~~~W~H~~Cf~ 65 (106)
T 2dmj_A 27 SCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFW 65 (106)
T ss_dssp BCSSSCCBCCTTCEEEEEEEEETTTTEEEEEEEETTHHH
T ss_pred cchhhCCccCCCCEEEEEEecCCCCCCCcCEeECcCccc
Confidence 79999999965432111 1 1 1346888876
No 150
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=48.37 E-value=7.6 Score=26.56 Aligned_cols=29 Identities=21% Similarity=0.407 Sum_probs=17.7
Q ss_pred cccccCCccCCCceEEec-------C---CcccccCccc
Q psy7480 117 YCAACTKVIPAFEMVMRA-------K---NNVYHLECFA 145 (204)
Q Consensus 117 ~C~~C~~~I~~~~~~~~~-------~---~~~~H~~Cf~ 145 (204)
.|..|+..|.-++.-|.. . ..-||..||.
T Consensus 22 ~Ck~Ck~kI~KgeLRiG~~v~~~~~dG~~~~W~H~~Cf~ 60 (114)
T 1v9x_A 22 SCKTCKSVINKENFRLGKLVQSTHFDGIMPMWNHASCIL 60 (114)
T ss_dssp BCSSSCCBCCSSSEEEEECCCCSSSSCCCCEEEEHHHHH
T ss_pred CchhhCCccCCCCEEEEEEecCcccCCCcceeECccccc
Confidence 799999988654432221 1 2246888876
No 151
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.91 E-value=5.4 Score=22.85 Aligned_cols=12 Identities=25% Similarity=0.678 Sum_probs=6.1
Q ss_pred cccccccccccc
Q psy7480 52 KECASCGKRITE 63 (204)
Q Consensus 52 ~~C~~C~~~I~~ 63 (204)
..|..|...+.+
T Consensus 16 ~~C~IC~~~~~~ 27 (58)
T 2ecj_A 16 ASCSVCLEYLKE 27 (58)
T ss_dssp CBCSSSCCBCSS
T ss_pred CCCccCCcccCc
Confidence 345555554443
No 152
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=46.95 E-value=15 Score=33.56 Aligned_cols=87 Identities=18% Similarity=0.374 Sum_probs=55.2
Q ss_pred CCCCCCccccccccccccceeEeecCccccccCccccCCCcccCcCCCeEEeeCCeecccccc-cccccCcccccccCCc
Q psy7480 46 GASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDY-LRLFGTTGYCAACTKV 124 (204)
Q Consensus 46 ~~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~~~g~~~C~~cy-~~~~~~~~~C~~C~~~ 124 (204)
...+...+|..|-+.|.+. .++.|+--=..|..||-.+. +....||=..-. ...|. .|..|.+
T Consensus 101 ~i~pD~a~C~~Cl~e~~dp-----~~rry~ypF~nCt~CGPR~t-------ii~~lPYDR~~TsM~~F~---mC~~C~~- 164 (772)
T 4g9i_A 101 IIPPDIAICDDCLRELFDP-----TNKRYMYPFIVCTNCGPRFT-------IIEDLPYDRENTTMKEFP---MCDFCRS- 164 (772)
T ss_dssp CCCCCCCCCHHHHHHHSST-----TSTTTTCTTCCCTTSSCCGG-------GCCSSSCCGGGSGGGGSC---CCHHHHH-
T ss_pred ccCCchhhhHHHHHHhcCC-----CCCccCCccccCCCCCchhh-------hhhcCCCCCCCCcCCCCC---CChhHHH-
Confidence 3456788999999888775 36777766678999987654 112233222111 12232 5777754
Q ss_pred cCCCceEEecCCcccccCccccccCCccc
Q psy7480 125 IPAFEMVMRAKNNVYHLECFACQQCNHRF 153 (204)
Q Consensus 125 I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l 153 (204)
++-.-.++.||.+=..|..|+-.|
T Consensus 165 -----EY~dp~dRRfhAqp~aC~~CGP~l 188 (772)
T 4g9i_A 165 -----EYEDPLNRRYHAEPTACPVCGPSY 188 (772)
T ss_dssp -----HHHCSSSTTTTCTTCCCTTTSCCE
T ss_pred -----HhCCCCCCCCcCCCCCCccCCceE
Confidence 344455778888888888888766
No 153
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=43.04 E-value=8.7 Score=28.47 Aligned_cols=49 Identities=6% Similarity=-0.011 Sum_probs=35.8
Q ss_pred ccCccccCCCcccCcCCCeEEeeCCeecccccccccccCc-ccccccCCccCC
Q psy7480 76 EDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTT-GYCAACTKVIPA 127 (204)
Q Consensus 76 ~~Cf~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~~~-~~C~~C~~~I~~ 127 (204)
+.-|.|..|...+. .++....|..||..|....+... ..|..|+.++..
T Consensus 104 p~~f~CPI~~elm~---DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMR---EPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCC---CCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 56688999988886 56777899999998876544210 158888888754
No 154
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=43.00 E-value=40 Score=21.06 Aligned_cols=14 Identities=21% Similarity=0.539 Sum_probs=9.7
Q ss_pred CCCccccccccccc
Q psy7480 49 GGLKECASCGKRIT 62 (204)
Q Consensus 49 ~~~~~C~~C~~~I~ 62 (204)
.....|..|++.|.
T Consensus 23 ~~~nRC~~CrKkvg 36 (74)
T 1wfl_A 23 PKKNRCFMCRKKVG 36 (74)
T ss_dssp SCTTBCSSSCCBCG
T ss_pred CcCCcChhhCCccc
Confidence 34567888888655
No 155
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=42.28 E-value=10 Score=23.00 Aligned_cols=27 Identities=19% Similarity=0.443 Sum_probs=17.7
Q ss_pred cccccCCccCCCceEEecC---CcccccCc
Q psy7480 117 YCAACTKVIPAFEMVMRAK---NNVYHLEC 143 (204)
Q Consensus 117 ~C~~C~~~I~~~~~~~~~~---~~~~H~~C 143 (204)
.|..|++++.+.+..|.-. ..-||..|
T Consensus 10 ~C~~C~~p~~~~~~mI~CD~~C~~WfH~~C 39 (65)
T 2vpb_A 10 PCGICTNEVNDDQDAILCEASCQKWFHRIC 39 (65)
T ss_dssp BCTTTCSBCCTTSCEEEBTTTTCCEEEHHH
T ss_pred cCccCCCccCCCCCeEecccCccccCchhc
Confidence 6888888886554555554 45567655
No 156
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=41.31 E-value=12 Score=24.44 Aligned_cols=12 Identities=25% Similarity=0.224 Sum_probs=8.9
Q ss_pred CeeecHHHHHHH
Q psy7480 164 NKILCEYDYEER 175 (204)
Q Consensus 164 ~~~~C~~c~~~~ 175 (204)
+.++|+.||+-.
T Consensus 42 ~FPvCrpCyEYE 53 (93)
T 1weo_A 42 GFPACRPCYEYE 53 (93)
T ss_dssp CCCCCHHHHHHH
T ss_pred CChhhHHHHHHH
Confidence 457899999744
No 157
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A*
Probab=39.59 E-value=9.1 Score=26.28 Aligned_cols=13 Identities=31% Similarity=0.741 Sum_probs=10.4
Q ss_pred cccccCCccCCCc
Q psy7480 117 YCAACTKVIPAFE 129 (204)
Q Consensus 117 ~C~~C~~~I~~~~ 129 (204)
.|..|++.|..++
T Consensus 40 ~Ck~C~~kI~Kge 52 (116)
T 3od8_A 40 SCKKCSESIPKDS 52 (116)
T ss_dssp BCTTTCCBCCTTS
T ss_pred cCcccCCccCCCC
Confidence 7999999997544
No 158
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=39.57 E-value=7.9 Score=29.25 Aligned_cols=30 Identities=23% Similarity=0.421 Sum_probs=20.6
Q ss_pred ccccCCCcccCcCCCeEEeeCCeecccccccc
Q psy7480 79 LKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110 (204)
Q Consensus 79 f~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~ 110 (204)
..|..|+....+ ......+|+.+|..|+.+
T Consensus 173 ~~C~~CGE~~~~--~~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 173 VRCDVCGEYTYE--ADAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp EECTTTCCEEEG--GGCEEETTEEECHHHHHC
T ss_pred eECCCCCCchhh--cceeeeCCcEEChhhhcc
Confidence 467777776653 334567888888888754
No 159
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=39.32 E-value=20 Score=22.32 Aligned_cols=41 Identities=15% Similarity=0.281 Sum_probs=29.5
Q ss_pred cccCCCcccCcCCCeEEeeCCee-cccccccccccCcccccccCCccCC
Q psy7480 80 KCGCCDCRLGEVGSTLYQKANLI-LCKRDYLRLFGTTGYCAACTKVIPA 127 (204)
Q Consensus 80 ~C~~C~~~L~~~~~~~~~~~g~~-~C~~cy~~~~~~~~~C~~C~~~I~~ 127 (204)
.|..|-.... ...+..-|+. +|..|..... .|..|..+|..
T Consensus 20 ~C~IC~~~~~---~~v~~pCgH~~~C~~C~~~~~----~CP~Cr~~i~~ 61 (79)
T 2yho_A 20 LCMVCCEEEI---NSTFCPCGHTVCCESCAAQLQ----SCPVCRSRVEH 61 (79)
T ss_dssp BCTTTSSSBC---CEEEETTCBCCBCHHHHTTCS----BCTTTCCBCCE
T ss_pred EeEEeCcccC---cEEEECCCCHHHHHHHHHhcC----cCCCCCchhhC
Confidence 5666666554 4456677877 8999987652 79999999854
No 160
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.04 E-value=18 Score=21.88 Aligned_cols=29 Identities=14% Similarity=0.368 Sum_probs=20.3
Q ss_pred EEeeCCee-cccccccccccCcccccccCCccCC
Q psy7480 95 LYQKANLI-LCKRDYLRLFGTTGYCAACTKVIPA 127 (204)
Q Consensus 95 ~~~~~g~~-~C~~cy~~~~~~~~~C~~C~~~I~~ 127 (204)
.+..-|+. +|..|.... . .|..|..+|..
T Consensus 29 v~~pCgH~~~C~~C~~~~--~--~CP~CR~~i~~ 58 (68)
T 2ea5_A 29 VLLPCRHTCLCDGCVKYF--Q--QCPMCRQFVQE 58 (68)
T ss_dssp EETTTTBCCSCTTHHHHC--S--SCTTTCCCCCC
T ss_pred EEECCCChhhhHHHHhcC--C--CCCCCCcchhc
Confidence 44555666 788887743 2 79999999954
No 161
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A
Probab=38.72 E-value=10 Score=25.74 Aligned_cols=13 Identities=23% Similarity=0.506 Sum_probs=10.1
Q ss_pred cccccCCccCCCc
Q psy7480 117 YCAACTKVIPAFE 129 (204)
Q Consensus 117 ~C~~C~~~I~~~~ 129 (204)
.|..|+..|..++
T Consensus 21 ~Ck~C~~kI~Kg~ 33 (111)
T 3odc_A 21 TCKGCMEKIEKGQ 33 (111)
T ss_dssp BCTTTCCBCCTTC
T ss_pred cccccCCCccCCc
Confidence 7999999996543
No 162
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=37.97 E-value=26 Score=28.72 Aligned_cols=42 Identities=19% Similarity=0.444 Sum_probs=32.3
Q ss_pred ccccCCCcccCcCCCeEEeeCCee-cccccccccccCcccccccCCccCC
Q psy7480 79 LKCGCCDCRLGEVGSTLYQKANLI-LCKRDYLRLFGTTGYCAACTKVIPA 127 (204)
Q Consensus 79 f~C~~C~~~L~~~~~~~~~~~g~~-~C~~cy~~~~~~~~~C~~C~~~I~~ 127 (204)
+.|..|-..+. ...+..-|+. +|..|.... . .|..|..+|..
T Consensus 296 ~~C~IC~~~~~---~~v~lpCgH~~fC~~C~~~~--~--~CP~CR~~i~~ 338 (345)
T 3t6p_A 296 RTCKVCMDKEV---SVVFIPCGHLVVCQECAPSL--R--KCPICRGIIKG 338 (345)
T ss_dssp CBCTTTSSSBC---CEEEETTCCEEECTTTGGGC--S--BCTTTCCBCCE
T ss_pred CCCCccCCcCC---ceEEcCCCChhHhHHHHhcC--C--cCCCCCCCccC
Confidence 57777877665 4566678888 999998866 3 89999999953
No 163
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=37.89 E-value=11 Score=23.71 Aligned_cols=29 Identities=28% Similarity=0.642 Sum_probs=17.3
Q ss_pred CCeeccccccccccc-CcccccccCCccCC
Q psy7480 99 ANLILCKRDYLRLFG-TTGYCAACTKVIPA 127 (204)
Q Consensus 99 ~g~~~C~~cy~~~~~-~~~~C~~C~~~I~~ 127 (204)
-|..+|..|+.+... ....|..|.+++..
T Consensus 33 CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 33 CGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp TSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred CCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 455566666655431 01278888888854
No 164
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=37.87 E-value=20 Score=21.46 Aligned_cols=28 Identities=18% Similarity=0.529 Sum_probs=16.6
Q ss_pred cccccCCccccCCCeEEEe--CCeeec-HHH
Q psy7480 144 FACQQCNHRFCVGDRFYLC--DNKILC-EYD 171 (204)
Q Consensus 144 f~C~~C~~~l~~~~~~~~~--~~~~~C-~~c 171 (204)
..|+.|+++|..|..-|-. .-++|| ..|
T Consensus 21 v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~C 51 (62)
T 2das_A 21 ITCANCKKPLQKGQTAYQRKGSAHLFCSTTC 51 (62)
T ss_dssp CBCTTTCCBCCTTSCCEECTTCCCEESSHHH
T ss_pred cChhhccchhhcCceeeeecCchhheechHH
Confidence 3577888888666554443 245665 344
No 165
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=36.09 E-value=13 Score=22.02 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=20.0
Q ss_pred eCCee-cccccccccccCcccccccCCccC
Q psy7480 98 KANLI-LCKRDYLRLFGTTGYCAACTKVIP 126 (204)
Q Consensus 98 ~~g~~-~C~~cy~~~~~~~~~C~~C~~~I~ 126 (204)
.-|.. +|..|..+.......|..|.++|.
T Consensus 26 pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 26 RTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp TEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 55665 788887655422237999999995
No 166
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.58 E-value=36 Score=21.76 Aligned_cols=34 Identities=9% Similarity=-0.013 Sum_probs=26.5
Q ss_pred CccccccCCccccCCCeEEE-eCCeeecHHHHHHHhh
Q psy7480 142 ECFACQQCNHRFCVGDRFYL-CDNKILCEYDYEERQV 177 (204)
Q Consensus 142 ~Cf~C~~C~~~l~~~~~~~~-~~~~~~C~~c~~~~~~ 177 (204)
.=|.|..|...+ .+.+.. ..|..||+.|..+-+.
T Consensus 6 ~~~~CPI~~~~~--~dPV~~~~cGh~f~r~cI~~~l~ 40 (94)
T 2yu4_A 6 SGFTCPITKEEM--KKPVKNKVCGHTYEEDAIVRMIE 40 (94)
T ss_dssp SCCBCTTTCSBC--SSEEEESSSCCEEEHHHHHHHHH
T ss_pred cEeECcCcCchh--cCCEEcCCCCCeecHHHHHHHHH
Confidence 347899998887 557777 4899999999876653
No 167
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12
Probab=35.57 E-value=11 Score=25.72 Aligned_cols=13 Identities=23% Similarity=0.322 Sum_probs=9.9
Q ss_pred cccccCCccCCCc
Q psy7480 117 YCAACTKVIPAFE 129 (204)
Q Consensus 117 ~C~~C~~~I~~~~ 129 (204)
.|..|+..|.-++
T Consensus 17 ~Ck~C~~kI~Kge 29 (117)
T 1uw0_A 17 GCKKCKEKIVKGV 29 (117)
T ss_dssp ECTTSSCEECTTC
T ss_pred cchhhCcccCCCC
Confidence 7888998886543
No 168
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=35.28 E-value=11 Score=33.74 Aligned_cols=87 Identities=16% Similarity=0.337 Sum_probs=54.2
Q ss_pred CCCCCCccccccccccccceeEeecCccccccCccccCCCcccCcCCCeEEeeCCeecccccc-cccccCcccccccCCc
Q psy7480 46 GASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDY-LRLFGTTGYCAACTKV 124 (204)
Q Consensus 46 ~~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~~~g~~~C~~cy-~~~~~~~~~C~~C~~~ 124 (204)
...+...+|..|-+.|.+. .++.|+--=..|..||-.+. +....+|=..-. ...|. .|..|.+
T Consensus 12 ~i~pD~a~C~~Cl~e~~dp-----~~Rry~YpF~nCt~CGPR~t-------ii~~lPYDR~~TsM~~F~---mC~~C~~- 75 (657)
T 3ttc_A 12 QIVPDAATCPACLAEMNTP-----GERRYRYPFINCTHCGPRFT-------IIRAMPYDRPFTVMAAFP---LCPACDK- 75 (657)
T ss_dssp CCCCCBCCCHHHHHHHTST-----TSTTTTCTTCCBTTBBCSGG-------GBSSSSCSGGGBGGGGSC---CCHHHHH-
T ss_pred ccCCchhhhHHHHHHhcCC-----CCcccCCccccCcCCCchHH-------hcccCCCCCCCCcccCCC---CChHHHH-
Confidence 3556778999999988775 36777777778999987654 112223222111 12232 5777754
Q ss_pred cCCCceEEecCCcccccCccccccCCccc
Q psy7480 125 IPAFEMVMRAKNNVYHLECFACQQCNHRF 153 (204)
Q Consensus 125 I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l 153 (204)
++-.-.++.||.+=..|..|+-.|
T Consensus 76 -----EY~dp~dRRfHAqp~aCp~CGP~l 99 (657)
T 3ttc_A 76 -----EYRDPLDRRFHAQPVACPECGPYL 99 (657)
T ss_dssp -----HHHCTTSTTTTCTTCCCTTTSCCE
T ss_pred -----HhCCCCCCcCcCCCCcCcccCccc
Confidence 333455677888777777787765
No 169
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=34.64 E-value=55 Score=20.41 Aligned_cols=16 Identities=25% Similarity=0.652 Sum_probs=10.6
Q ss_pred CCCCCccccccccccc
Q psy7480 47 ASGGLKECASCGKRIT 62 (204)
Q Consensus 47 ~~~~~~~C~~C~~~I~ 62 (204)
.......|..|++.+.
T Consensus 21 ~k~~~~RC~~C~kkvg 36 (74)
T 1wfp_A 21 PKSTATRCLSCNKKVG 36 (74)
T ss_dssp TTCCCCBCSSSCCBCT
T ss_pred CcccCccchhhcCccc
Confidence 3445667888887654
No 170
>1m5h_A Formylmethanofuran--tetrahydromethanopterin formyltransferase; alpha/beta sandwich; 2.00A {Archaeoglobus fulgidus} SCOP: d.58.33.1 d.58.33.1
Probab=34.21 E-value=12 Score=29.72 Aligned_cols=18 Identities=11% Similarity=0.388 Sum_probs=15.4
Q ss_pred ccceeeeccCCccccccc
Q psy7480 3 TRRMWYIDICDYRSYFDS 20 (204)
Q Consensus 3 ~~~~~~~~~~~~~~~~~s 20 (204)
.|++||+++||=....+.
T Consensus 136 grr~wriPVMdGEF~~E~ 153 (297)
T 1m5h_A 136 GRKCWAVPMMEGDFIIEN 153 (297)
T ss_dssp TEEEEEEECSSSEEEEES
T ss_pred CEEEEEeeeccCcEEEEE
Confidence 599999999998887744
No 171
>1ftr_A FTR, formylmethanofuran\:tetrahydromethanopterin formyltransferase; methanogenesis, archae, acyltransferase, hyperthermophilic, halophilic; 1.70A {Methanopyrus kandleri} SCOP: d.58.33.1 d.58.33.1 PDB: 2fhj_A* 2fhk_A*
Probab=33.23 E-value=12 Score=29.71 Aligned_cols=18 Identities=17% Similarity=0.469 Sum_probs=15.4
Q ss_pred ccceeeeccCCccccccc
Q psy7480 3 TRRMWYIDICDYRSYFDS 20 (204)
Q Consensus 3 ~~~~~~~~~~~~~~~~~s 20 (204)
.|++||+++||=....+.
T Consensus 139 grr~wrIPVMdGEF~~E~ 156 (296)
T 1ftr_A 139 GRKVWKIPVVEGEFIVED 156 (296)
T ss_dssp TEEEEEEEETTEEEEEES
T ss_pred CEEEEEeeeccCcEEEEE
Confidence 599999999998887744
No 172
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=33.09 E-value=41 Score=22.16 Aligned_cols=35 Identities=20% Similarity=0.469 Sum_probs=19.8
Q ss_pred cccCccccccCCc-cccCCCeEEEe--CCeeecHHHHHHH
Q psy7480 139 YHLECFACQQCNH-RFCVGDRFYLC--DNKILCEYDYEER 175 (204)
Q Consensus 139 ~H~~Cf~C~~C~~-~l~~~~~~~~~--~~~~~C~~c~~~~ 175 (204)
.|.. +.|..|+. +| .|.+|.=. .+.-+|..||...
T Consensus 28 ~H~g-v~Cd~C~~~pI-~G~RykC~~C~d~DLC~~C~~~~ 65 (98)
T 2dip_A 28 KHLG-IPCNNCKQFPI-EGKCYKCTECIEYHLCQECFDSY 65 (98)
T ss_dssp SCCC-CCCSSSCCSSC-CSCEEEESSSSSCEEEHHHHHTT
T ss_pred ccCC-CCCcCCCCCCc-ccCeEECCCCCCccHHHHHHccC
Confidence 4443 55566654 34 45455432 2455899998764
No 173
>1m5s_A Formylmethanofuran--tetrahydromethanopterin formyltransferase; alpha/beta sandwich; 1.85A {Methanosarcina barkeri} SCOP: d.58.33.1 d.58.33.1
Probab=32.95 E-value=12 Score=29.72 Aligned_cols=18 Identities=11% Similarity=0.217 Sum_probs=15.4
Q ss_pred ccceeeeccCCccccccc
Q psy7480 3 TRRMWYIDICDYRSYFDS 20 (204)
Q Consensus 3 ~~~~~~~~~~~~~~~~~s 20 (204)
.|++||+++||=....+.
T Consensus 136 grr~wriPVMdGEFl~E~ 153 (297)
T 1m5s_A 136 GRKVYKVPIMEGDFLAEE 153 (297)
T ss_dssp TEEEEEEEETTEEEEEES
T ss_pred CEEEEEeeeccCcEEEEE
Confidence 599999999998887744
No 174
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=32.93 E-value=46 Score=19.12 Aligned_cols=32 Identities=9% Similarity=0.190 Sum_probs=20.3
Q ss_pred cccccCCccccCCCeEEEeCCeeecHHHHHHH
Q psy7480 144 FACQQCNHRFCVGDRFYLCDNKILCEYDYEER 175 (204)
Q Consensus 144 f~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~ 175 (204)
.+|+.|++.-........-.+...|..|-..-
T Consensus 12 ~~CSFCGk~~~ev~~LIaGpgv~IC~eCi~~~ 43 (51)
T 2ds5_A 12 LYCSFCGKSQHEVRKLIAGPSVYICDECVDLC 43 (51)
T ss_dssp CBCTTTCCBTTTSSCEEECSSCEEEHHHHHHH
T ss_pred cEecCCCCCHHHhcccCCCCCCEehHHHHHHH
Confidence 36888888763333444334667899887643
No 175
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=32.92 E-value=15 Score=21.84 Aligned_cols=29 Identities=21% Similarity=0.340 Sum_probs=19.2
Q ss_pred eCCee-cccccccccccCcccccccCCccC
Q psy7480 98 KANLI-LCKRDYLRLFGTTGYCAACTKVIP 126 (204)
Q Consensus 98 ~~g~~-~C~~cy~~~~~~~~~C~~C~~~I~ 126 (204)
.-|.. +|..|..+.......|..|..+|.
T Consensus 27 pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 27 KTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp TEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 45555 677777654432237999999984
No 176
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=31.85 E-value=27 Score=20.76 Aligned_cols=40 Identities=25% Similarity=0.360 Sum_probs=21.1
Q ss_pred CCCccccccccccccceeEeecCcccc--ccCccccCCCcccC
Q psy7480 49 GGLKECASCGKRITERFLLKALDLFWH--EDCLKCGCCDCRLG 89 (204)
Q Consensus 49 ~~~~~C~~C~~~I~~~~~~~~~~~~~H--~~Cf~C~~C~~~L~ 89 (204)
...-.|..|++.......+.. -...| ..-|.|..|++.+.
T Consensus 16 ~~~~~C~~C~~~f~~~~~l~~-H~~~h~~~~~~~C~~C~~~f~ 57 (77)
T 2cot_A 16 RRRYKCDECGKSFSHSSDLSK-HRRTHTGEKPYKCDECGKAFI 57 (77)
T ss_dssp SCSSBCSSSCCBCSCHHHHHH-HHTTTCCSCSEECSSSCCEES
T ss_pred CCCEECCCCCcccCCHHHHHH-HHHHcCCCcCeeCCCCCCccC
Confidence 345678888877654421111 01112 23477777777654
No 177
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.36 E-value=53 Score=20.47 Aligned_cols=31 Identities=23% Similarity=0.385 Sum_probs=16.9
Q ss_pred CCCccccccccccccc-eeEeec-----CccccccCc
Q psy7480 49 GGLKECASCGKRITER-FLLKAL-----DLFWHEDCL 79 (204)
Q Consensus 49 ~~~~~C~~C~~~I~~~-~~~~~~-----~~~~H~~Cf 79 (204)
.....|..|....... .++..= ...||..|+
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl 49 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACL 49 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHH
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHH
Confidence 3456799998766433 222211 155666665
No 178
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=29.82 E-value=46 Score=20.35 Aligned_cols=32 Identities=9% Similarity=0.190 Sum_probs=20.5
Q ss_pred cccccCCccccCCCeEEEeCCeeecHHHHHHH
Q psy7480 144 FACQQCNHRFCVGDRFYLCDNKILCEYDYEER 175 (204)
Q Consensus 144 f~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~ 175 (204)
..|+.|++.-........-.+...|..|...-
T Consensus 19 ~~CSFCGK~e~eV~~LIaGpgvyICdeCI~~c 50 (67)
T 1ovx_A 19 LYCSFCGKSQHEVRKLIAGPSVYICDECVDLC 50 (67)
T ss_dssp CCCTTTCCCTTTSSSEEECSSCEEEHHHHHHH
T ss_pred cEecCCCCCHHHHcccCCCCCCChhHHHHHHH
Confidence 36888888763333444334667899997654
No 179
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=28.76 E-value=51 Score=19.95 Aligned_cols=14 Identities=29% Similarity=0.638 Sum_probs=9.7
Q ss_pred CCCccccccccccc
Q psy7480 49 GGLKECASCGKRIT 62 (204)
Q Consensus 49 ~~~~~C~~C~~~I~ 62 (204)
.....|..|++.+.
T Consensus 13 ~~~~rC~~C~kkvg 26 (64)
T 1wg2_A 13 RPNNRCFSCNKKVG 26 (64)
T ss_dssp CCSCSCTTTCCCCT
T ss_pred CcCCcChhhCCccc
Confidence 34567888888654
No 180
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=28.21 E-value=12 Score=22.87 Aligned_cols=14 Identities=29% Similarity=0.821 Sum_probs=11.3
Q ss_pred eCCeeecHHHHHHH
Q psy7480 162 CDNKILCEYDYEER 175 (204)
Q Consensus 162 ~~~~~~C~~c~~~~ 175 (204)
-+|.+||..||.+.
T Consensus 25 CdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 25 CDGDLYCARCFREG 38 (67)
T ss_dssp TTSEEECSSHHHHH
T ss_pred CCCceehHHHHHHH
Confidence 35778999999875
No 181
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=28.03 E-value=19 Score=19.24 Aligned_cols=15 Identities=27% Similarity=0.572 Sum_probs=9.0
Q ss_pred CCccccccccccccc
Q psy7480 50 GLKECASCGKRITER 64 (204)
Q Consensus 50 ~~~~C~~C~~~I~~~ 64 (204)
..-.|..|++.....
T Consensus 11 k~~~C~~C~k~f~~~ 25 (48)
T 2epr_A 11 KQVACEICGKIFRDV 25 (48)
T ss_dssp CSEEETTTTEEESSH
T ss_pred cCeeCCCCCcccCCH
Confidence 345677777765443
No 182
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.56 E-value=66 Score=20.02 Aligned_cols=45 Identities=20% Similarity=0.203 Sum_probs=20.8
Q ss_pred CeecccccccccccC--cccccccCCccCCCceEEe--cCCcccccCccc
Q psy7480 100 NLILCKRDYLRLFGT--TGYCAACTKVIPAFEMVMR--AKNNVYHLECFA 145 (204)
Q Consensus 100 g~~~C~~cy~~~~~~--~~~C~~C~~~I~~~~~~~~--~~~~~~H~~Cf~ 145 (204)
+.++|..|..+.... .-.|..|++.-.+. .+|. .=+..||..|..
T Consensus 9 ~~~~c~~C~~~~~w~C~~c~C~vC~~~~~~~-~ll~CD~C~~~yH~~Cl~ 57 (77)
T 2e6s_A 9 NDTECDLCGGDPEKKCHSCSCRVCGGKHEPN-MQLLCDECNVAYHIYCLN 57 (77)
T ss_dssp CCCCCTTTCSCSSSCCSSSSCSSSCCCCCST-TEEECSSSCCEEETTSSS
T ss_pred CCccChhhcCCCCeECCCCCCcCcCCcCCCC-CEEEcCCCCccccccccC
Confidence 455555554432110 00466676643332 2222 234567877754
No 183
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=27.51 E-value=26 Score=31.98 Aligned_cols=88 Identities=16% Similarity=0.431 Sum_probs=52.7
Q ss_pred CCCCCCCccccccccccccceeEeecCccccccCccccCCCcccCcCCCeEEeeCCeecccccc-cccccCcccccccCC
Q psy7480 45 GGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDY-LRLFGTTGYCAACTK 123 (204)
Q Consensus 45 ~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~~~~g~~~C~~cy-~~~~~~~~~C~~C~~ 123 (204)
....+...+|..|-+.|.+. .++.|+--=..|..||-.+. +....||=..-. ...|. .|..|.+
T Consensus 105 ~~i~pD~a~C~~Cl~e~~dp-----~~Rry~ypF~nCt~CGPR~t-------ii~~lPYDR~~TsM~~F~---mC~~C~~ 169 (761)
T 3vth_A 105 VPVSPDMGVCEDCLRELKDP-----KDRRYRYPFINCTNCGPRFS-------IIEDIPYDRAKTSMKVFP---MCEKCSR 169 (761)
T ss_dssp CCCCCCBCCCHHHHHHHTCT-----TSTTTTCTTCCBTTBBCSGG-------GBCSSSCCGGGBGGGGSC---CCHHHHH
T ss_pred cccCCCccccHHHHHHhcCC-----CccccCCCcccCCCCCcchh-------hhccCCCCCCCCccccCC---CCHHHHH
Confidence 34556788999999988775 36777777778999986654 112222221111 12222 5666653
Q ss_pred ccCCCceEEecCCcccccCccccccCCccc
Q psy7480 124 VIPAFEMVMRAKNNVYHLECFACQQCNHRF 153 (204)
Q Consensus 124 ~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l 153 (204)
++-.-.++.||.+=..|..|+-.|
T Consensus 170 ------EY~dp~~RRfhAqp~aC~~CGP~l 193 (761)
T 3vth_A 170 ------EYHDPHDRRFHAQPVACFDCGPSL 193 (761)
T ss_dssp ------HHTCTTSTTTTCTTCCCTTTSCCE
T ss_pred ------HhcCcccccccCCCCcCCccCCee
Confidence 233345677777777777776655
No 184
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=26.67 E-value=25 Score=22.18 Aligned_cols=40 Identities=15% Similarity=0.359 Sum_probs=22.4
Q ss_pred CCCccccccccccccceeEeecCcccc--ccCccccCCCcccC
Q psy7480 49 GGLKECASCGKRITERFLLKALDLFWH--EDCLKCGCCDCRLG 89 (204)
Q Consensus 49 ~~~~~C~~C~~~I~~~~~~~~~~~~~H--~~Cf~C~~C~~~L~ 89 (204)
...-+|..|++.......+.. -...| ..-|.|..|++.+.
T Consensus 26 ~~~h~C~~Cgk~F~~~~~L~~-H~~~H~~~k~~~C~~C~k~F~ 67 (85)
T 2lv2_A 26 AECHLCPVCGESFASKGAQER-HLRLLHAAQVFPCKYCPATFY 67 (85)
T ss_dssp CTTEECTTSCCEESSHHHHHH-HHHTTSCSSSEECTTSSCEES
T ss_pred CCCEECCCCCCCcCcHHHHhh-hhhhccCCCccCCCCCCCEeC
Confidence 344678999887765421111 01112 23578888887764
No 185
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=26.64 E-value=24 Score=19.84 Aligned_cols=7 Identities=29% Similarity=1.094 Sum_probs=3.3
Q ss_pred cccCCCc
Q psy7480 80 KCGCCDC 86 (204)
Q Consensus 80 ~C~~C~~ 86 (204)
.|..|+.
T Consensus 7 ~CP~C~~ 13 (50)
T 1pft_A 7 VCPACES 13 (50)
T ss_dssp SCTTTSC
T ss_pred eCcCCCC
Confidence 4555544
No 186
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis, apoptosis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.28 E-value=22 Score=24.94 Aligned_cols=13 Identities=23% Similarity=0.506 Sum_probs=10.2
Q ss_pred cccccCCccCCCc
Q psy7480 117 YCAACTKVIPAFE 129 (204)
Q Consensus 117 ~C~~C~~~I~~~~ 129 (204)
.|..|+..|.-++
T Consensus 29 ~CK~C~~kI~Kge 41 (134)
T 2cs2_A 29 TCKGCMEKIEKGQ 41 (134)
T ss_dssp BCSSSCCBCCTTS
T ss_pred cchhcCCcccCCC
Confidence 7999999986543
No 187
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=25.91 E-value=32 Score=18.01 Aligned_cols=26 Identities=15% Similarity=0.278 Sum_probs=16.7
Q ss_pred CCeecccccccccccCcccccccCCc
Q psy7480 99 ANLILCKRDYLRLFGTTGYCAACTKV 124 (204)
Q Consensus 99 ~g~~~C~~cy~~~~~~~~~C~~C~~~ 124 (204)
.|.--|..|+.+..+..-+|..|..+
T Consensus 5 ~G~W~C~~C~v~N~~~~~kC~aCet~ 30 (34)
T 3gj5_B 5 SGSWDCEVCLVQNKADSTKCIACESA 30 (34)
T ss_dssp -CCEECTTTCCEECSSCSBCTTTCCB
T ss_pred CCceECCeeEeECccccCEEcccCCc
Confidence 34445888887766554478888754
No 188
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=25.76 E-value=15 Score=27.36 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=18.5
Q ss_pred ccccccCCccccCCCeEEEeCCeeecHHHHHH
Q psy7480 143 CFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 174 (204)
Q Consensus 143 Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~ 174 (204)
=..|..|+...... |+.+|..|+.+
T Consensus 163 ~~~C~~CGE~~~~~-------g~~~C~~C~~~ 187 (191)
T 3d00_A 163 IVLCPQCREAYPAQ-------DGELCLSCQGG 187 (191)
T ss_dssp EEECTTTCCEEEGG-------GCSSCHHHHTT
T ss_pred CEECCcCCCChhhC-------CCcCCccccCC
Confidence 34699998876222 88999999864
No 189
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=25.69 E-value=42 Score=26.45 Aligned_cols=32 Identities=16% Similarity=0.173 Sum_probs=23.4
Q ss_pred CccccCCCcccCcCCCeEEe-eCCeecccccccccc
Q psy7480 78 CLKCGCCDCRLGEVGSTLYQ-KANLILCKRDYLRLF 112 (204)
Q Consensus 78 Cf~C~~C~~~L~~~~~~~~~-~~g~~~C~~cy~~~~ 112 (204)
=|.|..|...+. .++.. .-|+.||..|..+.+
T Consensus 181 el~CPIcl~~f~---DPVts~~CGHsFcR~cI~~~~ 213 (267)
T 3htk_C 181 ELTCPITCKPYE---APLISRKCNHVFDRDGIQNYL 213 (267)
T ss_dssp CSBCTTTSSBCS---SEEEESSSCCEEEHHHHHHHS
T ss_pred eeECcCccCccc---CCeeeCCCCCcccHHHHHHHH
Confidence 378888888886 45554 678888988876654
No 190
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=25.46 E-value=23 Score=22.74 Aligned_cols=58 Identities=16% Similarity=0.276 Sum_probs=29.7
Q ss_pred cccccCCccCC-CceEEe--cCCcccccCccccccCCccccCCCeEEEeCCeeecHHHHHHHhhhhc
Q psy7480 117 YCAACTKVIPA-FEMVMR--AKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFAN 180 (204)
Q Consensus 117 ~C~~C~~~I~~-~~~~~~--~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~ 180 (204)
.|..|+..-.. .+.+|. .-+..||..|.. -+| ......+..+.-||..|-.+......
T Consensus 18 ~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~-----Ppl-~~~~~~~p~g~W~C~~C~~~~~~~~~ 78 (88)
T 1wev_A 18 ACVVCRQMTVASGNQLVECQECHNLYHQDCHK-----PQV-TDKEVNDPRLVWYCARCTRQMKRMAQ 78 (88)
T ss_dssp SCSSSCCCCCCTTCCEEECSSSCCEEETTTSS-----SCC-CHHHHHCTTCCCCCHHHHHHHCCSTT
T ss_pred cCCCCCCCCCCCCCceEECCCCCCeEcCccCC-----Ccc-cccccCCCCCCeeCccccchhhhhcc
Confidence 67777765321 112322 235678888754 233 11001123567789999776543333
No 191
>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.22 E-value=33 Score=19.44 Aligned_cols=29 Identities=17% Similarity=0.233 Sum_probs=21.3
Q ss_pred CCeecccccccccccCcccccccCCccCC
Q psy7480 99 ANLILCKRDYLRLFGTTGYCAACTKVIPA 127 (204)
Q Consensus 99 ~g~~~C~~cy~~~~~~~~~C~~C~~~I~~ 127 (204)
.|.--|..|+....+...+|..|+.+=.+
T Consensus 9 ~g~W~C~~C~v~N~a~~~kC~aCetpKpg 37 (47)
T 2ebq_A 9 IGTWDCDTCLVQNKPEAIKCVACETPKPG 37 (47)
T ss_dssp SSSEECSSSCCEECSSCSBCSSSCCBCSC
T ss_pred CCceECCeeeccCccCCceecCcCCCCCC
Confidence 45566888988877665689999876543
No 192
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=24.75 E-value=51 Score=20.88 Aligned_cols=33 Identities=15% Similarity=0.285 Sum_probs=20.3
Q ss_pred cccccCCccccCCCeEEEe-CCeeecHHHHHHHh
Q psy7480 144 FACQQCNHRFCVGDRFYLC-DNKILCEYDYEERQ 176 (204)
Q Consensus 144 f~C~~C~~~l~~~~~~~~~-~~~~~C~~c~~~~~ 176 (204)
|.|..|-..+.....+.+. =|+.||..|+..-+
T Consensus 6 ~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~ 39 (94)
T 1wim_A 6 SGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYV 39 (94)
T ss_dssp CCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHH
T ss_pred cCCcccCcccccccceEcCCCCCcccHHHHHHHH
Confidence 4577777666222223333 48899999986554
No 193
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.57 E-value=16 Score=23.76 Aligned_cols=11 Identities=36% Similarity=1.062 Sum_probs=8.4
Q ss_pred ccccccCCccc
Q psy7480 143 CFACQQCNHRF 153 (204)
Q Consensus 143 Cf~C~~C~~~l 153 (204)
=|.|..|++.+
T Consensus 80 ~~~C~~C~k~f 90 (115)
T 2dmi_A 80 VLKCMYCGHSF 90 (115)
T ss_dssp SCBCSSSCCBC
T ss_pred ceECCCCCCcc
Confidence 47788888876
No 194
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=24.08 E-value=19 Score=19.87 Aligned_cols=20 Identities=20% Similarity=0.507 Sum_probs=14.3
Q ss_pred CCCCccccccccccccceeE
Q psy7480 48 SGGLKECASCGKRITERFLL 67 (204)
Q Consensus 48 ~~~~~~C~~C~~~I~~~~~~ 67 (204)
...-.+|.+|++||.-..++
T Consensus 14 ~~~YRvC~~CgkPi~lsAIv 33 (44)
T 2lo3_A 14 PIQYRVCEKCGKPLALTAIV 33 (44)
T ss_dssp CCCEEECTTTCCEEETTTHH
T ss_pred cccchhhcccCCcchHHHHH
Confidence 34567899999999765433
No 195
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=23.93 E-value=31 Score=28.76 Aligned_cols=46 Identities=13% Similarity=0.211 Sum_probs=32.5
Q ss_pred ccccCCCcccCcCCCeEEeeCCeeccccccccccc-CcccccccCCccCC
Q psy7480 79 LKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG-TTGYCAACTKVIPA 127 (204)
Q Consensus 79 f~C~~C~~~L~~~~~~~~~~~g~~~C~~cy~~~~~-~~~~C~~C~~~I~~ 127 (204)
..|..|-..+. ......-|+.+|..|...... ....|..|...|..
T Consensus 333 ~~C~ICle~~~---~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 333 QLCKICAENDK---DVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SBCTTTSSSBC---CEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCccCcCCC---CeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 46777766664 456678889999999865432 12389999999865
No 196
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=22.97 E-value=28 Score=15.29 Aligned_cols=10 Identities=30% Similarity=1.112 Sum_probs=7.6
Q ss_pred cccccCCccc
Q psy7480 144 FACQQCNHRF 153 (204)
Q Consensus 144 f~C~~C~~~l 153 (204)
|.|..|++.+
T Consensus 2 ~~C~~C~k~f 11 (27)
T 1znf_A 2 YKCGLCERSF 11 (27)
T ss_dssp CBCSSSCCBC
T ss_pred ccCCCCCCcC
Confidence 5678888776
No 197
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=22.83 E-value=48 Score=21.97 Aligned_cols=51 Identities=14% Similarity=0.328 Sum_probs=26.5
Q ss_pred cccccCCccCCCceEEecC---CcccccCccccccCCccccCCCeEE----EeCCeeecHHHHHHH
Q psy7480 117 YCAACTKVIPAFEMVMRAK---NNVYHLECFACQQCNHRFCVGDRFY----LCDNKILCEYDYEER 175 (204)
Q Consensus 117 ~C~~C~~~I~~~~~~~~~~---~~~~H~~Cf~C~~C~~~l~~~~~~~----~~~~~~~C~~c~~~~ 175 (204)
.|..|+++....+..|.-. ..-||..|.. | ....+. ..++..+|..|-.++
T Consensus 5 ~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVg-------l-t~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 5 PCGACRSEVNDDQDAILCEASCQKWFHRECTG-------M-TESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp BCTTTCSBCCTTSCEEECTTTTCCEEEGGGTT-------C-CHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCccCCCCCEEEecCCcccccccccCC-------c-CHHHHHhhccCCCCCEECccccCcC
Confidence 5778888764444455443 3446766532 2 100010 123567888886654
No 198
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=22.77 E-value=39 Score=17.51 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=15.6
Q ss_pred CeecccccccccccCcccccccCCc
Q psy7480 100 NLILCKRDYLRLFGTTGYCAACTKV 124 (204)
Q Consensus 100 g~~~C~~cy~~~~~~~~~C~~C~~~ 124 (204)
|+=-|..|+.+......+|..|..+
T Consensus 6 g~W~C~~C~~~N~~~~~kC~aC~tp 30 (33)
T 3gj3_B 6 GTWDCDTCLVQNKPEAVKCVACETP 30 (33)
T ss_dssp CCEECTTTCCEECTTCSBCTTTCCB
T ss_pred CceeCCcccCCCccccCEEcccCCC
Confidence 3344777777665544478888654
No 199
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.63 E-value=33 Score=19.38 Aligned_cols=31 Identities=16% Similarity=0.263 Sum_probs=22.4
Q ss_pred eeCCeecccccccccccCcccccccCCccCC
Q psy7480 97 QKANLILCKRDYLRLFGTTGYCAACTKVIPA 127 (204)
Q Consensus 97 ~~~g~~~C~~cy~~~~~~~~~C~~C~~~I~~ 127 (204)
...|.--|..|+.+..+...+|..|+.+=.+
T Consensus 7 ~~~gsW~C~~C~v~N~a~~~kC~aC~~pkpg 37 (47)
T 2ebr_A 7 GPEGSWDCELCLVQNKADSTKCLACESAKPG 37 (47)
T ss_dssp SCCSSCCCSSSCCCCCSSCSBCSSSCCBCCC
T ss_pred CCCCeeECCeeecCCcCCcceecCcCCCCCC
Confidence 3456667888988877665689999876543
No 200
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=21.97 E-value=22 Score=20.90 Aligned_cols=40 Identities=25% Similarity=0.402 Sum_probs=20.4
Q ss_pred CCCccccccccccccceeEeecCcccc--ccCccccCCCcccC
Q psy7480 49 GGLKECASCGKRITERFLLKALDLFWH--EDCLKCGCCDCRLG 89 (204)
Q Consensus 49 ~~~~~C~~C~~~I~~~~~~~~~~~~~H--~~Cf~C~~C~~~L~ 89 (204)
...-.|..|++.......+.. -...| ..-|.|..|++.+.
T Consensus 12 ~k~~~C~~C~k~f~~~~~L~~-H~~~h~~~~~~~C~~C~~~f~ 53 (72)
T 1x6e_A 12 EKPYGCVECGKAFSRSSILVQ-HQRVHTGEKPYKCLECGKAFS 53 (72)
T ss_dssp CCCEECSSSCCEESSHHHHHH-HHHGGGCSCCEECSSSCCEES
T ss_pred CCCccCCCCCCccCCHHHHHH-HHHhcCCCCCeECCCCCcccC
Confidence 345568888876654421111 00112 23467777776654
No 201
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=21.63 E-value=37 Score=20.73 Aligned_cols=24 Identities=29% Similarity=0.616 Sum_probs=11.3
Q ss_pred ccccCCCcccCcCCCeEEeeCCeeccccc
Q psy7480 79 LKCGCCDCRLGEVGSTLYQKANLILCKRD 107 (204)
Q Consensus 79 f~C~~C~~~L~~~~~~~~~~~g~~~C~~c 107 (204)
+.|..|+.+|. +....+.++|..|
T Consensus 9 L~CP~ck~~L~-----~~~~~~~LiC~~c 32 (68)
T 2hf1_A 9 LVCPLCKGPLV-----FDKSKDELICKGD 32 (68)
T ss_dssp CBCTTTCCBCE-----EETTTTEEEETTT
T ss_pred eECCCCCCcCe-----EeCCCCEEEcCCC
Confidence 35555655553 2222445555544
No 202
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=21.61 E-value=38 Score=20.68 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=12.2
Q ss_pred ccccCCCcccCcCCCeEEeeCCeeccccc
Q psy7480 79 LKCGCCDCRLGEVGSTLYQKANLILCKRD 107 (204)
Q Consensus 79 f~C~~C~~~L~~~~~~~~~~~g~~~C~~c 107 (204)
+.|..|+.+|. +....|.++|..|
T Consensus 11 L~CP~ck~~L~-----~~~~~g~LvC~~c 34 (67)
T 2jny_A 11 LACPKDKGPLR-----YLESEQLLVNERL 34 (67)
T ss_dssp CBCTTTCCBCE-----EETTTTEEEETTT
T ss_pred hCCCCCCCcCe-----EeCCCCEEEcCCC
Confidence 45666666553 2223455555554
No 203
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=21.55 E-value=30 Score=15.41 Aligned_cols=10 Identities=40% Similarity=1.258 Sum_probs=7.9
Q ss_pred cccccCCccc
Q psy7480 144 FACQQCNHRF 153 (204)
Q Consensus 144 f~C~~C~~~l 153 (204)
|.|..|++.+
T Consensus 3 ~~C~~C~~~f 12 (29)
T 1ard_A 3 FVCEVCTRAF 12 (29)
T ss_dssp CBCTTTCCBC
T ss_pred eECCCCCccc
Confidence 6788888876
No 204
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=21.45 E-value=39 Score=20.63 Aligned_cols=10 Identities=40% Similarity=0.630 Sum_probs=5.3
Q ss_pred ccccCCCccc
Q psy7480 79 LKCGCCDCRL 88 (204)
Q Consensus 79 f~C~~C~~~L 88 (204)
+.|..|+.+|
T Consensus 9 L~CP~ck~~L 18 (68)
T 2jr6_A 9 LVCPVTKGRL 18 (68)
T ss_dssp CBCSSSCCBC
T ss_pred eECCCCCCcC
Confidence 3555555554
No 205
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=21.05 E-value=26 Score=15.58 Aligned_cols=10 Identities=40% Similarity=1.062 Sum_probs=7.8
Q ss_pred cccccCCccc
Q psy7480 144 FACQQCNHRF 153 (204)
Q Consensus 144 f~C~~C~~~l 153 (204)
|.|..|++.+
T Consensus 4 ~~C~~C~k~f 13 (27)
T 2kvh_A 4 FSCSLCPQRS 13 (27)
T ss_dssp EECSSSSCEE
T ss_pred ccCCCcChhh
Confidence 6788888876
No 206
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=20.77 E-value=36 Score=20.92 Aligned_cols=9 Identities=44% Similarity=0.995 Sum_probs=4.2
Q ss_pred cccCCCccc
Q psy7480 80 KCGCCDCRL 88 (204)
Q Consensus 80 ~C~~C~~~L 88 (204)
.|..|+.+|
T Consensus 10 ~CP~ck~~L 18 (70)
T 2js4_A 10 VCPVCKGRL 18 (70)
T ss_dssp BCTTTCCBE
T ss_pred ECCCCCCcC
Confidence 444444444
Done!