RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7480
(204 letters)
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene,
transcription, developmental protein; 2.40A {Homo
sapiens} PDB: 2xjz_A
Length = 131
Score = 165 bits (419), Expect = 6e-53
Identities = 70/124 (56%), Positives = 83/124 (66%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L C C + I +R+ LKA+D +WHEDCL C C CRLGEVG LY K LC+RDYLR
Sbjct: 2 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 61
Query: 111 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 170
LFG G CA+C K I A+EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE
Sbjct: 62 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQ 121
Query: 171 DYEE 174
D E
Sbjct: 122 DIYE 125
Score = 46.3 bits (110), Expect = 5e-07
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 118 CAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFC-VGDRFYLCDNKILCEYDYEER 175
C C + I ++A + +H +C +C C R VG R Y + LC DY
Sbjct: 5 CGGCQQNIGD-RYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRL 62
Score = 45.5 bits (108), Expect = 8e-07
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 49 GGLKECASCGKRITERFL-LKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 107
G CASC KRI + ++ D +H +C KC C G + I+C++D
Sbjct: 64 GQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCV-GDRYLLINSDIVCEQD 122
Query: 108 YLRLFGTTG 116
G
Sbjct: 123 IYEWTKING 131
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding
protein 1; B-tandem zipper, protein binding; 1.30A {Mus
musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB:
2dfy_X 2xjz_I 2xjy_B
Length = 188
Score = 160 bits (405), Expect = 3e-50
Identities = 64/141 (45%), Positives = 91/141 (64%)
Query: 47 ASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKR 106
S K CA CG +I +RFLL A+D +WH CLKC C +LG++G++ Y K+ +ILC+
Sbjct: 1 GSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRN 60
Query: 107 DYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKI 166
DY+RLFG +G C+AC + IPA E+VMRA+ NVYHL+CF C C +R GDRF+ + +
Sbjct: 61 DYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSL 120
Query: 167 LCEYDYEERQVFANIAYNPSS 187
CE+D + ++ S
Sbjct: 121 FCEHDRPTALINGHLNSGGSG 141
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3;
intramolecular (fusion) protein-protein complex, protein
binding/transcription complex; NMR {Mus musculus}
Length = 182
Score = 150 bits (381), Expect = 1e-46
Identities = 55/131 (41%), Positives = 75/131 (57%), Gaps = 6/131 (4%)
Query: 46 GASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCK 105
G + + CA C + I +RF+LKALD WH CLKC C L E + + + CK
Sbjct: 55 GGTPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAE---RCFSRGESVYCK 111
Query: 106 RDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DN 164
D+ + FGT CAAC IP ++V RA++ VYHL CFAC C + GD FYL D+
Sbjct: 112 DDFFKRFGTK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDS 169
Query: 165 KILCEYDYEER 175
+++C+ DYE
Sbjct: 170 RLVCKADYETA 180
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein
ISL-1; protein-protein complex, LIM domain, Zn finger,
activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Length = 169
Score = 146 bits (369), Expect = 6e-45
Identities = 55/131 (41%), Positives = 76/131 (58%), Gaps = 6/131 (4%)
Query: 46 GASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCK 105
G++ + CA C + I +RF+LKALD WH CLKC C L E + + + CK
Sbjct: 1 GSTPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAE---RCFSRGESVYCK 57
Query: 106 RDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DN 164
D+ + FGT CAAC IP ++V RA++ VYHL CFAC C + GD FYL D+
Sbjct: 58 DDFFKRFGTK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDS 115
Query: 165 KILCEYDYEER 175
+++C+ DYE
Sbjct: 116 RLVCKADYETA 126
Score = 62.6 bits (152), Expect = 1e-12
Identities = 18/100 (18%), Positives = 30/100 (30%), Gaps = 5/100 (5%)
Query: 54 CASCGKRIT-ERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLF 112
CA+C I + + +A D +H C C C +L + + ++CK DY
Sbjct: 68 CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAK 127
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHR 152
M A + H +
Sbjct: 128 QGG--SGGSGGSGG--GTPMVAASPERHDGGLQANPVEVQ 163
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion,
acrosom; 2.62A {Homo sapiens}
Length = 126
Score = 107 bits (270), Expect = 1e-30
Identities = 29/124 (23%), Positives = 46/124 (37%), Gaps = 7/124 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I +A + WH C CD L G + +CK Y++
Sbjct: 6 CAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILA--GEIYVMVNDKPVCKPCYVKNHA 63
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHL--ECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
C C I + N +H ECF C C+ +G +F + + C +
Sbjct: 64 V--VCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCL-IGQKFMPVEGMVFCSVE 120
Query: 172 YEER 175
++R
Sbjct: 121 CKKR 124
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the
N-terminal LIM domain of LMO4...; fusion protein, LMO
proteins, metal binding protein; NMR {Mus musculus}
SCOP: g.39.1.3 g.39.1.3
Length = 122
Score = 105 bits (264), Expect = 7e-30
Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 16/128 (12%)
Query: 47 ASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKR 106
S K CA CG +I +RFLL A+D +WH CLKC C +LG++G++ Y K+ +ILC+
Sbjct: 1 GSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRN 60
Query: 107 DYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKI 166
DY+RLFG +G + + ++++ +G F D ++
Sbjct: 61 DYIRLFGNSGAGGSGGHMGSGGDVMV----------------VGEPTLMGGEFGDEDERL 104
Query: 167 LCEYDYEE 174
+ + +
Sbjct: 105 ITRLENTQ 112
Score = 48.8 bits (116), Expect = 5e-08
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 118 CAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFC-VGDRFYLCDNKILCEYDYEER 175
CA C I ++ A ++ +H C C C + +G Y ILC DY
Sbjct: 8 CAGCGGKIAD-RFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRL 65
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1;
LIM-interaction-domain (LID), metal binding protein; NMR
{Mus musculus} SCOP: g.39.1.3 g.39.1.3
Length = 114
Score = 105 bits (262), Expect = 1e-29
Identities = 43/105 (40%), Positives = 56/105 (53%)
Query: 49 GGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDY 108
G L C C + I +R+ LKA+D +WHEDCL C C CRLGEVG LY K LC+RDY
Sbjct: 1 GSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDY 60
Query: 109 LRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRF 153
LRL G+ G+ + V+ E + E + N +F
Sbjct: 61 LRLGGSGGHMGSGGDVMVVGEPTLMGGEFGDEDERLITRLENTQF 105
Score = 44.7 bits (105), Expect = 1e-06
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFC-VGDRFYLCDNKILCEYD 171
G+ C C + I ++A + +H +C +C C R VG R Y + LC D
Sbjct: 1 GSLLTCGGCQQNIGD-RYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRD 59
Query: 172 YEERQ 176
Y
Sbjct: 60 YLRLG 64
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1,
LIM domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Length = 101
Score = 101 bits (254), Expect = 2e-28
Identities = 30/104 (28%), Positives = 41/104 (39%), Gaps = 5/104 (4%)
Query: 47 ASGGLKECASCGKRIT-ERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCK 105
S G C C K I + + + FWH+ C +C C L T K N ILC
Sbjct: 1 GSSGSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLA--NETFVAKDNKILCN 58
Query: 106 RDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQC 149
+ R C C K I A + + K V+H +CF+
Sbjct: 59 KCTTREDSPK--CKGCFKAIVAGDQNVEYKGTVWHKDCFSGPSS 100
Score = 50.9 bits (122), Expect = 5e-09
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 118 CAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEER 175
C C K I A + KN +H CF C +C H + F DNKILC
Sbjct: 8 CVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPL-ANETFVAKDNKILCNKCTTRE 64
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1;
LMO2(LIM2)-LDB1(LID), chimera, fusion protein,
oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Length = 123
Score = 101 bits (253), Expect = 4e-28
Identities = 38/83 (45%), Positives = 46/83 (55%)
Query: 108 YLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKIL 167
YLRLFG G CA+C K I A+EM MR K+ VYHLECF C C F VGDR+ L ++ I+
Sbjct: 1 YLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIV 60
Query: 168 CEYDYEERQVFANIAYNPSSLAH 190
CE D E +
Sbjct: 61 CEQDIYEWTKINGGSGGSGGSGG 83
Score = 56.6 bits (136), Expect = 8e-11
Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Query: 49 GGLKECASCGKRIT-ERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 107
G CASC KRI ++ D +H +C KC C VG + I+C++D
Sbjct: 6 GQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHF-SVGDRYLLINSDIVCEQD 64
Query: 108 YLRLFGTTGYCAAC 121
G
Sbjct: 65 IYEWTKINGGSGGS 78
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4;
protein-protein interaction, LIM-interaction DOM LMO4,
RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo
sapiens}
Length = 123
Score = 91.7 bits (227), Expect = 3e-24
Identities = 35/82 (42%), Positives = 49/82 (59%)
Query: 32 TTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEV 91
+ G G K CA CG +I +RFLL A+D +WH CLKC C +LG++
Sbjct: 42 QSKLGGGGSGGHMGSGGLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDI 101
Query: 92 GSTLYQKANLILCKRDYLRLFG 113
G++ Y K+ +ILC+ DY+RLFG
Sbjct: 102 GTSSYTKSGMILCRNDYIRLFG 123
Score = 50.5 bits (120), Expect = 1e-08
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 118 CAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFC-VGDRFYLCDNKILCEYDYEER 175
CA C I ++ A ++ +H C C C + +G Y ILC DY
Sbjct: 64 CAGCGGKIAD-RFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRL 121
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 80
Score = 74.4 bits (183), Expect = 4e-18
Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 5/73 (6%)
Query: 48 SGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 107
G CA C + I L ALD WH C KC C L K + C+ D
Sbjct: 12 IRGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTG---EYISKDGVPYCESD 68
Query: 108 YLRLFGTTGYCAA 120
Y FG+ ++
Sbjct: 69 YHAQFGSG--PSS 79
Score = 45.5 bits (108), Expect = 3e-07
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 118 CAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEER 175
CA C + I + A + +H+ CF CQ C+ + D CE DY +
Sbjct: 18 CAGCKEEI-KHGQSLLALDKQWHVSCFKCQTCSVIL--TGEYISKDGVPYCESDYHAQ 72
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 81
Score = 72.5 bits (178), Expect = 2e-17
Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 100 NLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRF 159
+ +DY FG C C+ ++ M A YH ECFAC C GD +
Sbjct: 2 SSGSSGKDYWGKFGEF--CHGCSLLMT--GPFMVAGEFKYHPECFACMSCKVIIEDGDAY 57
Query: 160 YLCDN-KILCEYDYEER 175
L + + C + E
Sbjct: 58 ALVQHATLYCGKCHNEV 74
Score = 44.8 bits (106), Expect = 6e-07
Identities = 10/61 (16%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C C +T F+ A + +H +C C C + + + + + C + + +
Sbjct: 18 CHGCSLLMTGPFM-VAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVS 76
Query: 114 T 114
Sbjct: 77 G 77
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain,
ablim2, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 81
Score = 66.7 bits (163), Expect = 4e-15
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 107 DYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKI 166
DY RL+GT C +C + I V+ A YH +CF C C F GDR +
Sbjct: 9 DYQRLYGTR--CFSCDQFIE--GEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKEC 64
Query: 167 LCEYDYEE 174
+C+
Sbjct: 65 MCQKCSLP 72
Score = 42.9 bits (101), Expect = 3e-06
Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C SC + I + AL +H DC C C G + +C++ L +
Sbjct: 18 CFSCDQFIEGEVV-SALGKTYHPDCFVCAVCRLPFPP-GDRVTFNGKECMCQKCSLPVSV 75
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting
protein 1, zyxin related protein 1 (ZRP-1), structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 65.9 bits (161), Expect = 5e-15
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 114 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 173
+ C C + + + A + V+H+ CF C C + G FY + + CE Y
Sbjct: 4 GSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLR-GQHFYAVERRAYCEGCYV 62
Query: 174 ER 175
Sbjct: 63 AT 64
Score = 52.4 bits (126), Expect = 7e-10
Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 3/74 (4%)
Query: 47 ASGGLKECASCGKRIT-ERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCK 105
S G C CG+ + + + ALD +H C C C +L G Y C+
Sbjct: 1 GSSGSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLR--GQHFYAVERRAYCE 58
Query: 106 RDYLRLFGTTGYCA 119
Y+ +
Sbjct: 59 GCYVATLESGPSSG 72
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM
domains protein 1, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 62.0 bits (151), Expect = 3e-13
Identities = 16/72 (22%), Positives = 24/72 (33%), Gaps = 3/72 (4%)
Query: 104 CKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD 163
+ R C C K I A + + K V+H +CF C C F+
Sbjct: 6 SGKCTTREDSPK--CKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVI-GTGSFFPKG 62
Query: 164 NKILCEYDYEER 175
C +E +
Sbjct: 63 EDFYCVTCHETK 74
Score = 47.7 bits (114), Expect = 5e-08
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 7/69 (10%)
Query: 54 CASCGKRIT--ERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
C C K I ++ + + WH+DC C C +G + + K C +
Sbjct: 18 CKGCFKAIVAGDQNV-EYKGTVWHKDCFTCSNCKQVIG--TGSFFPKGEDFYCVTCHETK 74
Query: 112 FGTTGYCAA 120
F + ++
Sbjct: 75 FASG--PSS 81
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1;
ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK,
IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Length = 72
Score = 61.3 bits (149), Expect = 3e-13
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 115 TGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 174
+ C C E ++ + +YH +CF C QC +F FY + + CE+D++
Sbjct: 11 SATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFP-EGLFYEFEGRKYCEHDFQM 69
Score = 46.6 bits (111), Expect = 1e-07
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 54 CASCGKRITER-FLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLF 112
C C ++ + +HE C C C + Y+ C+ D+ LF
Sbjct: 14 CERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFP--EGLFYEFEGRKYCEHDFQMLF 71
Query: 113 G 113
Sbjct: 72 A 72
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 77
Score = 60.9 bits (148), Expect = 6e-13
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 103 LCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC 162
+ + L + C C E ++ + +YH +CF C QC +F FY
Sbjct: 1 ISEFMANALA--SATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQF-PEGLFYEF 57
Query: 163 DNKILCEYDYEE 174
+ + CE+D++
Sbjct: 58 EGRKYCEHDFQM 69
Score = 45.5 bits (108), Expect = 3e-07
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 54 CASCGKRITER-FLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLF 112
C C ++ + +HE C C C + Y+ C+ D+ LF
Sbjct: 14 CERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFP--EGLFYEFEGRKYCEHDFQMLF 71
Query: 113 G 113
Sbjct: 72 A 72
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting
protein 1, zyxin related protein 1 (ZRP-1), structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 81
Score = 59.7 bits (145), Expect = 1e-12
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 110
L++CA+C + I +R L +A+ +H C C C L + T + I C D+ R
Sbjct: 15 LEKCATCSQPILDRIL-RAMGKAYHPGCFTCVVCHRGLDGIPFT-VDATSQIHCIEDFHR 72
Query: 111 LFGTTGYCAA 120
F + ++
Sbjct: 73 KFAS--GPSS 80
Score = 45.1 bits (107), Expect = 5e-07
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 118 CAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYEER 175
CA C++ I + ++RA YH CF C C+ G F + ++I C D+ +
Sbjct: 18 CATCSQPI--LDRILRAMGKAYHPGCFTCVVCHRGL-DGIPFTVDATSQIHCIEDFHRK 73
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM
domain 3, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: g.39.1.3 g.39.1.3
Length = 89
Score = 60.2 bits (146), Expect = 1e-12
Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 5/88 (5%)
Query: 33 TDASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVG 92
+ VT+ G++ + C CG I + KA D + H +C C C+ L + G
Sbjct: 7 GVRAPVTKVHGGAGSAQRMPLCDKCGSGIVGAVV-KARDKYRHPECFVCADCNLNLKQKG 65
Query: 93 STLYQKANLILCKRDYLRLFGTTGYCAA 120
+ + C+ +
Sbjct: 66 Y--FFVEGELYCETHARARTSGP--SSG 89
Score = 51.7 bits (124), Expect = 2e-09
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 118 CAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEER 175
C C I V++A++ H ECF C CN ++ + ++ CE R
Sbjct: 28 CDKCGSGI--VGAVVKARDKYRHPECFVCADCNLNL-KQKGYFFVEGELYCETHARAR 82
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 80
Score = 58.5 bits (142), Expect = 4e-12
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 104 CKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD 163
+D+L +F C C + + E + A + V+H ECF C C F F+ D
Sbjct: 6 SGKDFLAMFSPK--CGGCNRPV--LENYLSAMDTVWHPECFVCGDCFTSF-STGSFFELD 60
Query: 164 NKILCEYDYEER 175
+ CE Y R
Sbjct: 61 GRPFCELHYHHR 72
Score = 51.2 bits (123), Expect = 3e-09
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C C + + E +L A+D WH +C CG C + ++ C+ Y G
Sbjct: 18 CGGCNRPVLENYL-SAMDTVWHPECFVCGDCFTSFS--TGSFFELDGRPFCELHYHHRRG 74
Query: 114 TTGYCAA 120
+ ++
Sbjct: 75 SG--PSS 79
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 57.4 bits (139), Expect = 9e-12
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 118 CAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEER 175
C C K I M K + +H CF C +C F DN+ C YE++
Sbjct: 8 CQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPI-GTKSFIPKDNQNFCVPCYEKQ 64
Score = 49.7 bits (119), Expect = 8e-09
Identities = 17/75 (22%), Positives = 25/75 (33%), Gaps = 5/75 (6%)
Query: 47 ASGGLKECASCGKRIT-ERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCK 105
S G C C K I ++ WHE C C C +G + K N C
Sbjct: 1 GSSGSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIG--TKSFIPKDNQNFCV 58
Query: 106 RDYLRLFGTTGYCAA 120
Y + + ++
Sbjct: 59 PCYEKQHASG--PSS 71
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding
protein, zinc finger; NMR {Coturnix japonica} SCOP:
g.39.1.3 g.39.1.3 PDB: 2o10_A
Length = 81
Score = 57.4 bits (139), Expect = 1e-11
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 48 SGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 107
GG +C +CG+ + ++ +H C C C L +T+ + CK
Sbjct: 4 WGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLD--STTVAIHDAEVYCKSC 61
Query: 108 YLRLFGTTGY 117
Y + +G GY
Sbjct: 62 YGKKYGPKGY 71
Score = 42.4 bits (100), Expect = 5e-06
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
+G C AC + + E V +H CF C C + D ++ C+
Sbjct: 4 WGGGNKCGACGRTVYHAEEVQ-CDGRSFHRCCFLCMVCRKNL-DSTTVAIHDAEVYCKSC 61
Query: 172 YEER 175
Y ++
Sbjct: 62 YGKK 65
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1,
skeletal muscle LIM- protein 1, SLIM 1, structural
genomics NPPSFA; NMR {Homo sapiens}
Length = 77
Score = 57.1 bits (138), Expect = 1e-11
Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 6/76 (7%)
Query: 102 ILCKRDYLRLFGTTGYCAACTKVIPAF---EMVMRAKNNVYHLECFACQQCNHRFCVGDR 158
Y CA C I F V+ + +H CF C++C+ R
Sbjct: 4 GSSGDCYKNFVAKK--CAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNL-ANKR 60
Query: 159 FYLCDNKILCEYDYEE 174
F ++ C ++
Sbjct: 61 FVFHQEQVYCPDCAKK 76
Score = 39.8 bits (93), Expect = 4e-05
Identities = 13/62 (20%), Positives = 18/62 (29%), Gaps = 6/62 (9%)
Query: 54 CASCGKRIT----ERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYL 109
CA C IT ++ WH+ C C C L + C
Sbjct: 18 CAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLA--NKRFVFHQEQVYCPDCAK 75
Query: 110 RL 111
+L
Sbjct: 76 KL 77
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 80
Score = 57.3 bits (139), Expect = 1e-11
Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 5/72 (6%)
Query: 104 CKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD 163
Y F CA C+K + + + ++ +H EC C C G +F D
Sbjct: 6 SGPCYENKFAPR--CARCSKTL--TQGGVTYRDQPWHRECLVCTGCQTPL-AGQQFTSRD 60
Query: 164 NKILCEYDYEER 175
C + E
Sbjct: 61 EDPYCVACFGEL 72
Score = 50.0 bits (120), Expect = 7e-09
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C K +T+ + D WH +CL C C L G + C + LF
Sbjct: 18 CARCSKTLTQGGV-TYRDQPWHRECLVCTGCQTPLA--GQQFTSRDEDPYCVACFGELFA 74
Query: 114 TTGYCAA 120
+ ++
Sbjct: 75 S--GPSS 79
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein
2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 82
Score = 56.0 bits (135), Expect = 4e-11
Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 104 CKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD 163
Y F T CA C ++I + ++ +H CF C +C + F D
Sbjct: 6 SGPCYDNTFANT--CAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSL-ADEPFTCQD 62
Query: 164 NKILCEYDYEER 175
+++LC Y
Sbjct: 63 SELLCNDCYCSA 74
Score = 51.0 bits (122), Expect = 3e-09
Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 5/68 (7%)
Query: 54 CASCGKRIT-ERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLF 112
CA C + I + L D +HE C +C C L + + +LC Y F
Sbjct: 18 CAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSL--ADEPFTCQDSELLCNDCYCSAF 75
Query: 113 GTTGYCAA 120
+ ++
Sbjct: 76 SS--GPSS 81
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 72
Score = 55.5 bits (134), Expect = 5e-11
Identities = 12/58 (20%), Positives = 18/58 (31%), Gaps = 1/58 (1%)
Query: 118 CAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEER 175
C+AC + + + +H CF C C F C YE +
Sbjct: 8 CSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPL-GSRSFVPDKGAHYCVPCYENK 64
Score = 51.2 bits (123), Expect = 2e-09
Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 5/75 (6%)
Query: 47 ASGGLKECASCGKRITE-RFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCK 105
S G C++CG+ + L+ WHE C C C+ LG + C
Sbjct: 1 GSSGSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLG--SRSFVPDKGAHYCV 58
Query: 106 RDYLRLFGTTGYCAA 120
Y F + ++
Sbjct: 59 PCYENKFASG--PSS 71
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM
domain protein CLP-36, contractIle protein, structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 79
Score = 55.1 bits (133), Expect = 7e-11
Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 5/77 (6%)
Query: 44 AGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLIL 103
+ G + L C CG I F+ K D H +C C C L + G + + I
Sbjct: 8 SIGNAQKLPMCDKCGTGIVGVFV-KLRDRHRHPECYVCTDCGTNLKQKGH--FFVEDQIY 64
Query: 104 CKRDYLRLFGTTGYCAA 120
C++ +
Sbjct: 65 CEKHARERVSGP--SSG 79
Score = 49.0 bits (117), Expect = 1e-08
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 118 CAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEER 175
C C I + ++ ++ H EC+ C C + +++I CE ER
Sbjct: 18 CDKCGTGI--VGVFVKLRDRHRHPECYVCTDCGTNL-KQKGHFFVEDQIYCEKHARER 72
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3,
LIM-domain protein DRAL, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 70
Score = 54.7 bits (132), Expect = 1e-10
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 5/74 (6%)
Query: 47 ASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKR 106
S G C C K IT + + WH++C C C +L G + + C
Sbjct: 1 GSSGSSGCVQCKKPITTGGV-TYREQPWHKECFVCTACRKQLS--GQRFTARDDFAYCLN 57
Query: 107 DYLRLFGTTGYCAA 120
+ L+ + ++
Sbjct: 58 CFCDLYAS--GPSS 69
Score = 50.0 bits (120), Expect = 5e-09
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 115 TGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 174
+ C C K I + + +H ECF C C + G RF D+ C + +
Sbjct: 5 SSGCVQCKKPI--TTGGVTYREQPWHKECFVCTACRKQL-SGQRFTARDDFAYCLNCFCD 61
Query: 175 R 175
Sbjct: 62 L 62
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 70
Score = 54.4 bits (131), Expect = 1e-10
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 47 ASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKR 106
S G C CG+ I R + KA++ WH +C +C C L ++G + A LC+
Sbjct: 1 GSSGSSGCHQCGEFIIGRVI-KAMNNSWHPECFRCDLCQEVLADIG--FVKNAGRHLCRP 57
Query: 107 DYLRLFGTTGYC 118
+ R +
Sbjct: 58 CHNREKASGPSS 69
Score = 52.4 bits (126), Expect = 6e-10
Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 118 CAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEER 175
C C + I V++A NN +H ECF C C F + LC +
Sbjct: 8 CHQCGEFI--IGRVIKAMNNSWHPECFRCDLCQEVL-ADIGFVKNAGRHLCRPCHNRE 62
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 90
Score = 54.0 bits (130), Expect = 3e-10
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
CA C + I FL AL WH + C C + +G ++ + C+ Y + F
Sbjct: 28 CAHCNQVIRGPFL-VALGKSWHPEEFNCAHCKNTMAYIGF--VEEKGALYCELCYEKFFA 84
Query: 114 TTGYCAA 120
+ ++
Sbjct: 85 SG--PSS 89
Score = 53.6 bits (129), Expect = 4e-10
Identities = 18/83 (21%), Positives = 27/83 (32%), Gaps = 4/83 (4%)
Query: 93 STLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHR 152
+ + L+ T CA C +VI + A +H E F C C +
Sbjct: 4 GSSGDQDTLVQRAEHIPA-GKRTPMCAHCNQVI--RGPFLVALGKSWHPEEFNCAHCKNT 60
Query: 153 FCVGDRFYLCDNKILCEYDYEER 175
F + CE YE+
Sbjct: 61 M-AYIGFVEEKGALYCELCYEKF 82
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Length = 66
Score = 52.3 bits (126), Expect = 6e-10
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C +C + I R + A+ WH + C C+ G Y++ L C+ Y +LFG
Sbjct: 8 CGACRRPIEGRVV-NAMGKQWHVEHFVCAKCEKPFL--GHRHYERKGLAYCETHYNQLFG 64
Query: 114 T 114
Sbjct: 65 D 65
Score = 50.7 bits (122), Expect = 3e-09
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 118 CAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQV 177
C AC + I V+ A +H+E F C +C F G R Y CE Y +
Sbjct: 8 CGACRRPI--EGRVVNAMGKQWHVEHFVCAKCEKPFL-GHRHYERKGLAYCETHYNQL-- 62
Query: 178 FANI 181
F ++
Sbjct: 63 FGDV 66
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle;
NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Length = 192
Score = 55.4 bits (133), Expect = 7e-10
Identities = 19/118 (16%), Positives = 36/118 (30%), Gaps = 4/118 (3%)
Query: 48 SGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 107
GG K+C C K + ++ +H+ C C C L +T+ + I CK
Sbjct: 4 WGGGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNL--DSTTVAVHGDEIYCKSC 61
Query: 108 YLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNK 165
Y + +G + + E + + N + +
Sbjct: 62 YGKKYGPK--GKGKGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSDG 117
Score = 52.3 bits (125), Expect = 8e-09
Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 4/68 (5%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
C CG+ + + WH+ C +C C L +TL K I CK Y + FG
Sbjct: 118 CPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLE--STTLADKDGEIYCKGCYAKNFG 175
Query: 114 TTGYCAAC 121
Sbjct: 176 PK--GFGF 181
Score = 46.9 bits (111), Expect = 6e-07
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
+G C C K + E V + + + +H CF C C + ++I C+
Sbjct: 4 WGGGKKCGVCQKAVYFAEEV-QCEGSSFHKSCFLCMVCKKNL-DSTTVAVHGDEIYCKSC 61
Query: 172 YEER 175
Y ++
Sbjct: 62 YGKK 65
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 91
Score = 52.5 bits (126), Expect = 9e-10
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Query: 48 SGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 107
+ + C C K + L A +H C +C C+ +L T I CK
Sbjct: 12 APARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLS--LGTYASLHGRIYCKPH 69
Query: 108 YLRLFGTTG 116
+ +LF + G
Sbjct: 70 FNQLFKSKG 78
Score = 44.1 bits (104), Expect = 1e-06
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
C C K + E ++ A V+H+ CF C CN++ +G + +I C+
Sbjct: 12 APARETCVECQKTVYPMERLL-ANQQVFHISCFRCSYCNNKLSLGT-YASLHGRIYCKPH 69
Query: 172 YEE 174
+ +
Sbjct: 70 FNQ 72
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein
1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 69
Score = 51.2 bits (123), Expect = 2e-09
Identities = 18/68 (26%), Positives = 21/68 (30%), Gaps = 3/68 (4%)
Query: 47 ASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKR 106
S G C C K IT + D WH DC C C +L G + C
Sbjct: 1 GSSGSSGCVKCNKAITSGGI-TYQDQPWHADCFVCVTCSKKLA--GQRFTAVEDQYYCVD 57
Query: 107 DYLRLFGT 114
Y
Sbjct: 58 CYKNFVSG 65
Score = 50.5 bits (121), Expect = 4e-09
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 118 CAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEER 175
C C K I + ++ +H +CF C C+ + G RF +++ C Y+
Sbjct: 8 CVKCNKAI--TSGGITYQDQPWHADCFVCVTCSKKL-AGQRFTAVEDQYYCVDCYKNF 62
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 76
Score = 50.5 bits (121), Expect = 5e-09
Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
Query: 44 AGGASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLIL 103
+ G+SG +C C K + + +L WH+ CLKC C L +
Sbjct: 2 SSGSSGMASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLT--PGGHAEHDGKPF 59
Query: 104 CKRD-YLRLFGTTGY 117
C + Y LFG+
Sbjct: 60 CHKPCYATLFGSGPS 74
Score = 41.2 bits (97), Expect = 9e-06
Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 2/61 (3%)
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 171
G C C K + E V + +H C C++C+ G D K C
Sbjct: 6 SGMASKCPKCDKTVYFAEKVS-SLGKDWHKFCLKCERCSKTLTPG-GHAEHDGKPFCHKP 63
Query: 172 Y 172
Sbjct: 64 C 64
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 49.0 bits (117), Expect = 1e-08
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 117 YCAACTKVIPAF--EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 174
CA CT I + + +H +CF C++C+ VG F + ILC ++
Sbjct: 7 GCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSL-VGRGFLTERDDILCPDCGKD 65
Query: 175 R 175
Sbjct: 66 I 66
Score = 48.3 bits (115), Expect = 3e-08
Identities = 19/70 (27%), Positives = 25/70 (35%), Gaps = 5/70 (7%)
Query: 47 ASGGLKECASCGKRITERF---LLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLIL 103
S G CA C I+ + + WH DC C C L VG + + IL
Sbjct: 1 GSSGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSL--VGRGFLTERDDIL 58
Query: 104 CKRDYLRLFG 113
C + G
Sbjct: 59 CPDCGKDISG 68
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM
domain protein; NMR {Rattus rattus} SCOP: g.39.1.3
g.39.1.3
Length = 76
Score = 48.1 bits (115), Expect = 3e-08
Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 3/65 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD-YLRLF 112
C C K + + +L WH CLKC C L + C Y +F
Sbjct: 3 CPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLT--SGGHAEHEGKPYCNHPCYSAMF 60
Query: 113 GTTGY 117
G G+
Sbjct: 61 GPKGF 65
Score = 37.3 bits (87), Expect = 3e-04
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Query: 118 CAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 172
C C K + E V + +H C C++C G + K C +
Sbjct: 3 CPKCDKEVYFAERVT-SLGKDWHRPCLKCEKCGKTLTSG-GHAEHEGKPYCNHPC 55
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN
actin- interacting protein, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 76
Score = 46.4 bits (110), Expect = 1e-07
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 117 YCAACTKVIPAFEM--VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCE 169
C AC+K I + +++ +H ECF C +C+ VG F + +I C+
Sbjct: 7 GCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSL-VGKGFLTQNKEIFCQ 60
Score = 43.7 bits (103), Expect = 1e-06
Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 5/68 (7%)
Query: 48 SGGLKECASCGKRITERF---LLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILC 104
S G C +C K I+ + D WH +C CG C L VG + I C
Sbjct: 2 SSGSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSL--VGKGFLTQNKEIFC 59
Query: 105 KRDYLRLF 112
++ +
Sbjct: 60 QKCGSGMD 67
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains;
zinc finger protein, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 44.2 bits (104), Expect = 9e-07
Identities = 14/70 (20%), Positives = 23/70 (32%)
Query: 47 ASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKR 106
+G CA CG+ + L F+H C +C C+ L G + C +
Sbjct: 11 EAGAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQ 70
Query: 107 DYLRLFGTTG 116
+
Sbjct: 71 HLPQTDSGPS 80
Score = 38.4 bits (89), Expect = 1e-04
Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 2/64 (3%)
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGD-RFYLCDNKILCEY 170
G CA C + + E + + +H CF C C G + D C
Sbjct: 12 AGAGDLCALCGEHLYVLERLC-VNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQ 70
Query: 171 DYEE 174
+
Sbjct: 71 HLPQ 74
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 73
Score = 43.6 bits (102), Expect = 1e-06
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 118 CAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILC 168
C +C K I V+ A YH C C +C F G+ YL + I
Sbjct: 8 CDSCEKYIT--GRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWH 56
Score = 37.8 bits (87), Expect = 2e-04
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 47 ASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKR 106
S G C SC K IT R L +A + +H C C C E G +Y + + I
Sbjct: 1 GSSGSSGCDSCEKYITGRVL-EAGEKHYHPSCALCVRCGQMFAE-GEEMYLQGSSIWHPA 58
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His
protein, LIM and senescent cell antigen-like domains 1,
structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 79
Score = 40.9 bits (96), Expect = 1e-05
Identities = 12/66 (18%), Positives = 20/66 (30%), Gaps = 4/66 (6%)
Query: 47 ASGGLKECASCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKR 106
G C C I E+ L + +H D C C L + + C
Sbjct: 11 RGLGKYICQKCHAIIDEQPL-IFKNDPYHPDHFNCANCGKELTADA---RELKGELYCLP 66
Query: 107 DYLRLF 112
+ ++
Sbjct: 67 CHDKMG 72
Score = 40.2 bits (94), Expect = 2e-05
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 4/60 (6%)
Query: 115 TGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 174
C C +I E + KN+ YH + F C C ++ C +++
Sbjct: 15 KYICQKCHAIID--EQPLIFKNDPYHPDHFNCANCGKEL--TADARELKGELYCLPCHDK 70
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.0 bits (98), Expect = 8e-05
Identities = 30/169 (17%), Positives = 52/169 (30%), Gaps = 58/169 (34%)
Query: 16 SYFDSLR-LATHYQV---DLTTDASSVTQGALAGGASGGLKECASCGKRITERFLLKALD 71
YF+ LR L Y V DL ++ L E E+ + L+
Sbjct: 168 DYFEELRDLYQTYHVLVGDLIKFSAET------------LSELIRTTLD-AEKVFTQGLN 214
Query: 72 LF-W--------HEDCLKCGCCDCRLGEVGSTLYQKAN-LILCK---------RDYLRLF 112
+ W +D L + + Q A+ ++ K R YL+
Sbjct: 215 ILEWLENPSNTPDKDYL----LSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLK-- 268
Query: 113 GTTGYCAACTKVIPA------------FEMVMRAKNNVYHLECFACQQC 149
G TG+ ++ A F V +A ++ + C +
Sbjct: 269 GATGHSQG---LVTAVAIAETDSWESFFVSVRKAITVLFFIGV-RCYEA 313
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM
domain EVH1 DO cell motility, phosphorylation,
cytoskeleton; 2.35A {Homo sapiens}
Length = 65
Score = 34.8 bits (80), Expect = 0.002
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 117 YCAACTKVIPAFEMVMRAKNNVYHL--ECFACQQCNHRFCVGDRFYLCDNKILC 168
C C I + N +H ECF C C+ +G +F + + C
Sbjct: 4 VCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCL-IGQKFMPVEGMVFC 56
Score = 32.1 bits (73), Expect = 0.018
Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 5/59 (8%)
Query: 52 KECASCGKRI-TERFLLKALDLFWH--EDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 107
C C I E + + WH +C C CC L +G ++ C +
Sbjct: 3 VVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCL--IGQKFMPVEGMVFCSVE 59
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus
scrofa} SCOP: g.39.1.4
Length = 31
Score = 25.4 bits (55), Expect = 1.9
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDC 78
CA CGK + + LD FWH+ C
Sbjct: 4 PNCARCGKIVYPTEKVNCLDKFWHKAC 30
>1pyb_A Methionyl-tRNA synthetase beta subunit; oligonucleotide,
oligosaccharide-binding fold, OB-fold, beta-barrel, RNA
binding protein; 2.50A {Aquifex aeolicus} SCOP: b.40.4.4
Length = 111
Score = 27.2 bits (61), Expect = 2.0
Identities = 10/18 (55%), Positives = 10/18 (55%), Gaps = 2/18 (11%)
Query: 173 EERQVFANIA--YNPSSL 188
EER V A IA Y P L
Sbjct: 44 EERTVVAGIAKYYTPEEL 61
>2cwp_A Metrs related protein; structural GEN riken structural
genomics/proteomics initiative, RSGI; 2.10A {Pyrococcus
horikoshii}
Length = 112
Score = 26.4 bits (59), Expect = 3.0
Identities = 7/18 (38%), Positives = 8/18 (44%), Gaps = 2/18 (11%)
Query: 173 EERQVFANIA--YNPSSL 188
EER + IA P L
Sbjct: 44 EERTIVTGIADQIPPEEL 61
>1h1o_A Cytochrome C-552; electron transport, electron transfer, heme; HET:
HEM; 2.13A {Thiobacillus ferrooxidans} SCOP: a.3.1.4
a.3.1.4
Length = 183
Score = 26.8 bits (59), Expect = 4.2
Identities = 7/48 (14%), Positives = 12/48 (25%)
Query: 10 DICDYRSYFDSLRLATHYQVDLTTDASSVTQGALAGGASGGLKECASC 57
I YF++ + A G + + C C
Sbjct: 75 KITALADYFNAQKPPMQSSGIKHAGAKEGKAIFNQGVTNEQIPACMEC 122
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger,
transferase-structural protein; 1.47A {Homo sapiens}
PDB: 2ln0_A
Length = 112
Score = 25.4 bits (55), Expect = 8.7
Identities = 15/81 (18%), Positives = 24/81 (29%), Gaps = 7/81 (8%)
Query: 83 CCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLE 142
C C + + + LI C +C K P + ++ +E
Sbjct: 8 CSFCLGTKEQNREKKPEELISCAD------CGNSGHPSCLKFSPELTVRVK-ALRWQCIE 60
Query: 143 CFACQQCNHRFCVGDRFYLCD 163
C C C + D CD
Sbjct: 61 CKTCSSCRDQGKNADNMLFCD 81
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family;
enzyme-substrate complex, protein binding,
transcription; HET: ALY MES; 2.00A {Archaeoglobus
fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Length = 253
Score = 26.0 bits (58), Expect = 9.1
Identities = 6/29 (20%), Positives = 10/29 (34%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCLKCG 82
C C + ++ + C KCG
Sbjct: 126 CLDCHETYDWSEFVEDFNKGEIPRCRKCG 154
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.329 0.140 0.470
Gapped
Lambda K H
0.267 0.0538 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,231,192
Number of extensions: 180544
Number of successful extensions: 1029
Number of sequences better than 10.0: 1
Number of HSP's gapped: 876
Number of HSP's successfully gapped: 119
Length of query: 204
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 115
Effective length of database: 4,216,824
Effective search space: 484934760
Effective search space used: 484934760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.4 bits)