RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7480
(204 letters)
>d1rutx2 g.39.1.3 (X:49-82) LIM only 4 (Lmo4) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 34
Score = 60.2 bits (146), Expect = 1e-13
Identities = 17/34 (50%), Positives = 26/34 (76%)
Query: 80 KCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 113
KC C +LG++G++ Y K+ +ILC+ DY+RLFG
Sbjct: 1 KCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 34
>d1j2oa2 g.39.1.3 (A:31-63) Rhombotin-2 (Lmo2) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 33
Score = 59.9 bits (145), Expect = 2e-13
Identities = 21/33 (63%), Positives = 22/33 (66%)
Query: 79 LKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 111
L C C CRLGEVG LY K LC+RDYLRL
Sbjct: 1 LSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRL 33
>d1rutx3 g.39.1.3 (X:83-113) LIM only 4 (Lmo4) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 31
Score = 54.7 bits (132), Expect = 1e-11
Identities = 19/30 (63%), Positives = 25/30 (83%)
Query: 115 TGYCAACTKVIPAFEMVMRAKNNVYHLECF 144
+G C+AC + IPA E+VMRA+ NVYHL+CF
Sbjct: 2 SGACSACGQSIPASELVMRAQGNVYHLKCF 31
>d1j2oa1 g.39.1.3 (A:1-30) Rhombotin-2 (Lmo2) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 30
Score = 49.8 bits (119), Expect = 1e-09
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 49 GGLKECASCGKRITERFLLKALDLFWHEDC 78
G L C C + I +R+ LKA+D +WHEDC
Sbjct: 1 GSLLTCGGCQQNIGDRYFLKAIDQYWHEDC 30
>d1rutx1 g.39.1.3 (X:19-48) LIM only 4 (Lmo4) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 30
Score = 48.6 bits (116), Expect = 3e-09
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDCL 79
K CA CG +I +RFLL A+D +WH CL
Sbjct: 3 KRCAGCGGKIADRFLLYAMDSYWHSRCL 30
>d1x3ha1 g.39.1.3 (A:8-42) Leupaxin {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 34.2 bits (79), Expect = 5e-04
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 106 RDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECF 144
+D+L +F C C + + E + A + V+H ECF
Sbjct: 1 KDFLAMFSPK--CGGCNRPVL--ENYLSAMDTVWHPECF 35
Score = 27.7 bits (62), Expect = 0.11
Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 54 CASCGKRITERFLLKALDLFWHEDC 78
C C + + E + L A+D WH +C
Sbjct: 11 CGGCNRPVLENY-LSAMDTVWHPEC 34
>d2dara2 g.39.1.3 (A:8-52) PDZ and LIM domain protein 5, Enigma
{Human (Homo sapiens) [TaxId: 9606]}
Length = 45
Score = 32.8 bits (75), Expect = 0.002
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 34 DASSVTQGALAGGASGGLKECASCGKRITERFLLKALDLFWHEDC 78
D ++ Q A A CA C + I FL+ AL WH +
Sbjct: 1 DQDTLVQRAEHIPAGKRTPMCAHCNQVIRGPFLV-ALGKSWHPEE 44
>d1rutx4 g.39.1.3 (X:114-146) LIM only 4 (Lmo4) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 33
Score = 29.9 bits (67), Expect = 0.019
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 145 ACQQCNHRFCVGDRFYLCDNKILCEYD 171
C C +R GDRF+ + + CE+D
Sbjct: 1 TCSTCRNRLVPGDRFHYINGSLFCEHD 27
>d2dj7a2 g.39.1.3 (A:8-43) Actin-binding LIM protein 3, abLIM-3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 28.3 bits (63), Expect = 0.062
Identities = 12/30 (40%), Positives = 13/30 (43%)
Query: 50 GLKECASCGKRITERFLLKALDLFWHEDCL 79
G CA C + I L ALD WH C
Sbjct: 7 GPSHCAGCKEEIKHGQSLLALDKQWHVSCF 36
>d1x63a1 g.39.1.3 (A:8-44) Four and a half LIM domains protein 1,
FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 37
Score = 28.2 bits (63), Expect = 0.072
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 108 YLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECF 144
R C C K I A + + K V+H +CF
Sbjct: 3 TTREDSPK--CKGCFKAIVAGDQNVEYKGTVWHKDCF 37
>d1g47a2 g.39.1.3 (A:36-70) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 28.1 bits (63), Expect = 0.074
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 144 FACQQCNHRFCVGDRFYLCDNKILCEYDYEER 175
F C QC +F FY + + CE+D++
Sbjct: 1 FVCAQCFQQF-PEGLFYEFEGRKYCEHDFQML 31
>d1b8ta4 g.39.1.3 (A:144-192) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 49
Score = 27.4 bits (61), Expect = 0.20
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 83 CCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGY 117
C C +TL K I CK Y + FG G+
Sbjct: 2 CAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGF 36
>d1b8ta3 g.39.1.3 (A:101-143) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 43
Score = 27.1 bits (60), Expect = 0.24
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 112 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECF 144
G + C C + + A E V+ +H CF
Sbjct: 12 VGGSDGCPRCGQAVYAAEKVI-GAGKSWHKSCF 43
Score = 25.6 bits (56), Expect = 0.77
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 49 GGLKECASCGKRITERFLLKALDLFWHEDC 78
GG C CG+ + + WH+ C
Sbjct: 13 GGSDGCPRCGQAVYAAEKVIGAGKSWHKSC 42
>d1b48a1 a.45.1.1 (A:80-222) Class alpha GST {Mouse (Mus musculus),
(a1-4) [TaxId: 10090]}
Length = 143
Score = 28.5 bits (63), Expect = 0.29
Identities = 14/88 (15%), Positives = 29/88 (32%)
Query: 106 RDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNK 165
+D + + + K ++ RAK + + + F VG++ D +
Sbjct: 21 QDLMMMIAVAPFKTPKEKEESYDLILSRAKTRYFPVFEKILKDHGEAFLVGNQLSWADIQ 80
Query: 166 ILCEYDYEERQVFANIAYNPSSLAHLRR 193
+L E ++ P A R
Sbjct: 81 LLEAILMVEELSAPVLSDFPLLQAFKTR 108
>d2dloa1 g.39.1.3 (A:8-42) Thyroid receptor interacting protein 6,
TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 26.7 bits (59), Expect = 0.29
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 118 CAACTKVIPAFEMVMRAKNNVYHLECF 144
CA C++ I + ++RA YH CF
Sbjct: 11 CATCSQPI--LDRILRAMGKAYHPGCF 35
Score = 25.5 bits (56), Expect = 0.73
Identities = 10/28 (35%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 51 LKECASCGKRITERFLLKALDLFWHEDC 78
L++CA+C + I +R +L+A+ +H C
Sbjct: 8 LEKCATCSQPILDR-ILRAMGKAYHPGC 34
>d2co8a2 g.39.1.3 (A:8-43) Nedd9 interacting protein with calponin
homology, NICAL (MICAL1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 36
Score = 26.3 bits (58), Expect = 0.33
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 48 SGGLKECASCGKRITERFLLKALDLFWHEDC 78
+G CA CG+ + L F+H C
Sbjct: 5 AGAGDLCALCGEHLYVLERLCVNGHFFHRSC 35
Score = 23.6 bits (51), Expect = 3.2
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 113 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECF 144
G CA C + + E + + +H CF
Sbjct: 6 GAGDLCALCGEHLYVLERLC-VNGHFFHRSCF 36
>d1x3ha2 g.39.1.3 (A:43-74) Leupaxin {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 25.5 bits (56), Expect = 0.57
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 146 CQQCNHRFCVGDRFYLCDNKILCEYDYEERQ 176
C C F G F+ D + CE Y R+
Sbjct: 2 CGDCFTSFSTGS-FFELDGRPFCELHYHHRR 31
>d1zfoa_ g.39.1.4 (A:) LASP-1 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 30
Score = 25.2 bits (55), Expect = 0.83
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 52 KECASCGKRITERFLLKALDLFWHEDC 78
CA CGK + + LD FWH+ C
Sbjct: 3 PNCARCGKIVYPTEKVNCLDKFWHKAC 29
>d2cu8a1 g.39.1.3 (A:8-37) Cysteine-rich (intestinal) protein,
CRP, CRIP {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 24.4 bits (53), Expect = 1.4
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 52 KECASCGKRI--TERFLLKALDLFWHEDCL 79
+C C K + E+ + +L WH+ CL
Sbjct: 3 SKCPKCDKTVYFAEK--VSSLGKDWHKFCL 30
>d2d8ya1 g.39.1.3 (A:9-43) Eplin, LIMA1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 35
Score = 24.3 bits (53), Expect = 2.0
Identities = 7/25 (28%), Positives = 9/25 (36%)
Query: 54 CASCGKRITERFLLKALDLFWHEDC 78
C C K + L A +H C
Sbjct: 10 CVECQKTVYPMERLLANQQVFHISC 34
>d2d8xa2 g.39.1.3 (A:8-32) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 23.7 bits (51), Expect = 2.6
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 54 CASCGKRITERFLLKALDLFWHEDCL 79
C CG+ I R ++KA++ WH +C
Sbjct: 1 CHQCGEFIIGR-VIKAMNNSWHPECF 25
>d2hanb1 g.39.1.2 (B:5-87) Ecdysone receptor DNA-binding domain
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 83
Score = 24.9 bits (54), Expect = 2.8
Identities = 9/36 (25%), Positives = 11/36 (30%)
Query: 143 CFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVF 178
C C+ R Y C CE D R+
Sbjct: 20 CEGCKGFFRRSVTKSAVYCCKFGRACEMDMYMRRKC 55
>d1b8ta2 g.39.1.3 (A:36-100) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 65
Score = 24.4 bits (53), Expect = 3.0
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 83 CCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGY 117
C C+ +T+ + I CK Y + +G G
Sbjct: 2 CMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGK 36
>d1k3ya1 a.45.1.1 (A:81-222) Class alpha GST {Human (Homo sapiens),
(a1-1) [TaxId: 9606]}
Length = 142
Score = 25.5 bits (55), Expect = 3.2
Identities = 14/88 (15%), Positives = 26/88 (29%)
Query: 106 RDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNK 165
D + C K + + KN + + + VG++ D
Sbjct: 20 ADLGEMILLLPVCPPEEKDAKLALIKEKIKNRYFPAFEKVLKSHGQDYLVGNKLSRADIH 79
Query: 166 ILCEYDYEERQVFANIAYNPSSLAHLRR 193
++ Y E + I+ P A R
Sbjct: 80 LVELLYYVEELDSSLISSFPLLKALKTR 107
>d1v6ga2 g.39.1.3 (A:42-81) Actin-binding LIM protein 2, abLIM2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 40
Score = 23.0 bits (49), Expect = 6.1
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 144 FACQQCNHRFCVGDRFYLCDNKILCEY 170
F C C F GDR + +C+
Sbjct: 1 FVCAVCRLPFPPGDRVTFNGKECMCQK 27
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.329 0.140 0.470
Gapped
Lambda K H
0.267 0.0421 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 824,773
Number of extensions: 38122
Number of successful extensions: 277
Number of sequences better than 10.0: 1
Number of HSP's gapped: 276
Number of HSP's successfully gapped: 62
Length of query: 204
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 123
Effective length of database: 1,295,466
Effective search space: 159342318
Effective search space used: 159342318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (24.2 bits)