BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7482
(327 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 74/284 (26%), Positives = 132/284 (46%), Gaps = 32/284 (11%)
Query: 4 LTQTFVTHSHTASVRSVA--ATSKLAASSGADETVVLYDMVKRKQSGALMQ----HEGTI 57
L QT HS +SVR VA + AS+ D+TV L++ ++G L+Q H ++
Sbjct: 90 LLQTLTGHS--SSVRGVAFSPDGQTIASASDDKTVKLWN-----RNGQLLQTLTGHSSSV 142
Query: 58 TCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVG 117
+ F+P+G + S SDD ++ ++ L+ L + ++V ++ P G+ S
Sbjct: 143 WGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS---SSVWGVAFSPDGQTIASAS 199
Query: 118 KDKTLRTWNLVKGRSAYITNLSS--YGVGFENLDSVVWSPEGLLYAIPIQNKAVVFSVEK 175
DKT++ WN +T SS GV F SP+G A +K V
Sbjct: 200 DDKTVKLWNRNGQLLQTLTGHSSSVRGVAF--------SPDGQTIASASDDKTVKLWNRN 251
Query: 176 AGVLQTLKS-ESKVHSVCFLNE-TTVCTGNEESAITAYNLTDGSHLWQIKASASRIKGLV 233
+LQTL S V+ V F + T+ + +++ + +N +G L + +S + G+
Sbjct: 252 GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVA 310
Query: 234 FFSIPQETTVCTGNEESAITAYNLTDGSHLWHIKASASRIKGLA 277
F P T+ + +++ + +N +G HL + +S + G+A
Sbjct: 311 FS--PDGQTIASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVA 351
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/305 (23%), Positives = 137/305 (44%), Gaps = 30/305 (9%)
Query: 4 LTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQ----HEGTITC 59
L QT HS + + + + AS+ D+TV L++ ++G L+Q H ++
Sbjct: 172 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-----RNGQLLQTLTGHSSSVRG 226
Query: 60 LKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKD 119
+ F+P+G + S SDD ++ ++ L+ L + ++VN ++ P G+ S D
Sbjct: 227 VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS---SSVNGVAFRPDGQTIASASDD 283
Query: 120 KTLRTWNLVKGRSAYITNLSS--YGVGFENLDSVVWSPEGLLYAIPIQNKAVVFSVEKAG 177
KT++ WN +T SS +GV F SP+G A +K V
Sbjct: 284 KTVKLWNRNGQLLQTLTGHSSSVWGVAF--------SPDGQTIASASDDKTVKLWNRNGQ 335
Query: 178 VLQTLKS-ESKVHSVCFLNE-TTVCTGNEESAITAYNLTDGSHLWQIKASASRIKGLVFF 235
LQTL S V V F + T+ + +++ + +N +G L + +S ++G+ F
Sbjct: 336 HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFS 394
Query: 236 SIPQETTVCTGNEESAITAYNLTDGSHLWHIKASASRIKGLASHRNHLICITSAGDLVV- 294
P T+ + +++ + +N +G L + +S + G+A + +++ D V
Sbjct: 395 --PDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVK 451
Query: 295 -WELN 298
W N
Sbjct: 452 LWNRN 456
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 114/259 (44%), Gaps = 27/259 (10%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQ----HEGTITCLK 61
QT HS + + + + AS+ D+TV L++ ++G L+Q H ++ +
Sbjct: 338 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-----RNGQLLQTLTGHSSSVRGVA 392
Query: 62 FTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKT 121
F+P+G + S SDD ++ ++ L+ L + ++V ++ P + S DKT
Sbjct: 393 FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS---SSVWGVAFSPDDQTIASASDDKT 449
Query: 122 LRTWNLVKGRSAYITNLSS--YGVGFENLDSVVWSPEGLLYAIPIQNKAVVFSVEKAGVL 179
++ WN +T SS GV F SP+G A +K V +L
Sbjct: 450 VKLWNRNGQLLQTLTGHSSSVRGVAF--------SPDGQTIASASDDKTVKLWNRNGQLL 501
Query: 180 QTLKS-ESKVHSVCFLNE-TTVCTGNEESAITAYNLTDGSHLWQIKASASRIKGLVFFSI 237
QTL S V V F + T+ + +++ + +N +G L + +S + G+ F
Sbjct: 502 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFS-- 558
Query: 238 PQETTVCTGNEESAITAYN 256
P T+ + + + + +N
Sbjct: 559 PDGQTIASASSDKTVKLWN 577
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 106/237 (44%), Gaps = 19/237 (8%)
Query: 45 KQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHI 104
K+ L H ++ + F+P+G + S SDD ++ ++ L+ L + ++V +
Sbjct: 7 KERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS---SSVWGV 63
Query: 105 SIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNLSS--YGVGFENLDSVVWSPEGLLYAI 162
+ P G+ S DKT++ WN +T SS GV F SP+G A
Sbjct: 64 AFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAF--------SPDGQTIAS 115
Query: 163 PIQNKAVVFSVEKAGVLQTLKS-ESKVHSVCFLNE-TTVCTGNEESAITAYNLTDGSHLW 220
+K V +LQTL S V V F + T+ + +++ + +N +G L
Sbjct: 116 ASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQ 174
Query: 221 QIKASASRIKGLVFFSIPQETTVCTGNEESAITAYNLTDGSHLWHIKASASRIKGLA 277
+ +S + G+ F P T+ + +++ + +N +G L + +S ++G+A
Sbjct: 175 TLTGHSSSVWGVAFS--PDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVA 228
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 22/172 (12%)
Query: 4 LTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQ----HEGTITC 59
L QT HS + + + + AS+ D+TV L++ ++G L+Q H ++
Sbjct: 418 LLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-----RNGQLLQTLTGHSSSVRG 472
Query: 60 LKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKD 119
+ F+P+G + S SDD ++ ++ L+ L + ++V ++ P G+ S D
Sbjct: 473 VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS---SSVRGVAFSPDGQTIASASDD 529
Query: 120 KTLRTWNLVKGRSAYITNLSS--YGVGFENLDSVVWSPEGLLYAIPIQNKAV 169
KT++ WN +T SS +GV F SP+G A +K V
Sbjct: 530 KTVKLWNRNGQLLQTLTGHSSSVWGVAF--------SPDGQTIASASSDKTV 573
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 66/129 (51%), Gaps = 16/129 (12%)
Query: 4 LTQTFVTHSHTASVRSVA--ATSKLAASSGADETVVLYDMVKRKQSGALMQ----HEGTI 57
L QT HS +SVR VA + AS+ D+TV L++ ++G L+Q H ++
Sbjct: 459 LLQTLTGHS--SSVRGVAFSPDGQTIASASDDKTVKLWN-----RNGQLLQTLTGHSSSV 511
Query: 58 TCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVG 117
+ F+P+G + S SDD ++ ++ L+ L + ++V ++ P G+ S
Sbjct: 512 RGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS---SSVWGVAFSPDGQTIASAS 568
Query: 118 KDKTLRTWN 126
DKT++ WN
Sbjct: 569 SDKTVKLWN 577
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
+T HS+ + S L S DE+V ++D+ K L H ++ + F +
Sbjct: 100 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 159
Query: 66 GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
GS ++S S DG I+ S Q K V+ + P+GK L+ D TL+ W
Sbjct: 160 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 218
Query: 126 NLVKGR 131
+ KG+
Sbjct: 219 DYSKGK 224
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Query: 2 YTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLK 61
Y L T H+ S + + ASS AD+ + ++ K + H+ I+ +
Sbjct: 12 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 71
Query: 62 FTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKT 121
++ + + L+S SDD ++ I+ V S + K K H V + +P L +S D++
Sbjct: 72 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGH-SNYVFCCNFNPQSNLIVSGSFDES 129
Query: 122 LRTWNLVKGR 131
+R W++ G+
Sbjct: 130 VRIWDVKTGK 139
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
+T HS+ + S L S DE+V ++D+ K L H ++ + F +
Sbjct: 101 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 160
Query: 66 GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
GS ++S S DG I+ S Q K V+ + P+GK L+ D TL+ W
Sbjct: 161 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 219
Query: 126 NLVKGR 131
+ KG+
Sbjct: 220 DYSKGK 225
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Query: 2 YTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLK 61
Y L T H+ S + + ASS AD+ + ++ K + H+ I+ +
Sbjct: 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 72
Query: 62 FTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKT 121
++ + + L+S SDD ++ I+ V S + K K H V + +P L +S D++
Sbjct: 73 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGH-SNYVFCCNFNPQSNLIVSGSFDES 130
Query: 122 LRTWNLVKGR 131
+R W++ G+
Sbjct: 131 VRIWDVKTGK 140
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
+T HS+ + S L S DE+V ++D+ K L H ++ + F +
Sbjct: 97 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 156
Query: 66 GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
GS ++S S DG I+ S Q K V+ + P+GK L+ D TL+ W
Sbjct: 157 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 215
Query: 126 NLVKGR 131
+ KG+
Sbjct: 216 DYSKGK 221
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Query: 2 YTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLK 61
Y L T H+ S + + ASS AD+ + ++ K + H+ I+ +
Sbjct: 9 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 68
Query: 62 FTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKT 121
++ + + L+S SDD ++ I+ V S + K K H V + +P L +S D++
Sbjct: 69 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGH-SNYVFCCNFNPQSNLIVSGSFDES 126
Query: 122 LRTWNLVKGR 131
+R W++ G+
Sbjct: 127 VRIWDVKTGK 136
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
+T HS+ + S L S DE+V ++D+ K L H ++ + F +
Sbjct: 101 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 160
Query: 66 GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
GS ++S S DG I+ S Q K V+ + P+GK L+ D TL+ W
Sbjct: 161 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 219
Query: 126 NLVKGR 131
+ KG+
Sbjct: 220 DYSKGK 225
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Query: 2 YTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLK 61
Y L T H+ S + + ASS AD+ + ++ K + H+ I+ +
Sbjct: 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 72
Query: 62 FTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKT 121
++ + + L+S SDD ++ I+ V S + K K H V + +P L +S D++
Sbjct: 73 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGH-SNYVFCCNFNPQSNLIVSGSFDES 130
Query: 122 LRTWNLVKGR 131
+R W++ G+
Sbjct: 131 VRIWDVKTGK 140
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
+T HS+ + S L S DE+V ++D+ K L H ++ + F +
Sbjct: 107 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 166
Query: 66 GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
GS ++S S DG I+ S Q K V+ + P+GK L+ D TL+ W
Sbjct: 167 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Query: 126 NLVKGR 131
+ KG+
Sbjct: 226 DYSKGK 231
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Query: 2 YTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLK 61
Y L T H+ S + + ASS AD+ + ++ K + H+ I+ +
Sbjct: 19 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 78
Query: 62 FTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKT 121
++ + + L+S SDD ++ I+ V S + K K H V + +P L +S D++
Sbjct: 79 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGH-SNYVFCCNFNPQSNLIVSGSFDES 136
Query: 122 LRTWNLVKGR 131
+R W++ G+
Sbjct: 137 VRIWDVKTGK 146
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 98/209 (46%), Gaps = 13/209 (6%)
Query: 13 HTASVRSVAATSK--LAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI 70
H+A V VA ++ A S+ D ++ L+++ + + H + + F+P+ ++
Sbjct: 66 HSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIV 125
Query: 71 SCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPS--GKLALSVGKDKTLRTWNLV 128
S D ++ ++ V + L + AH V+ + PS + +S G D ++ W+L
Sbjct: 126 SGGRDNALRVWNVKGECMHTLSRGAHT-DWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLA 184
Query: 129 KGRSAYITNLSSYGVGFENLDSVVWSPEGLLYAIPIQNK-AVVFSVEKAGVLQTLKSESK 187
GR +T+L + + SV SP+G L A ++ A ++ + K L + + +
Sbjct: 185 TGR--LVTDLKGH---TNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAP 239
Query: 188 VHSVCF-LNETTVCTGNEESAITAYNLTD 215
++ +CF N +C E+ I ++L +
Sbjct: 240 INQICFSPNRYWMCAATEK-GIRIFDLEN 267
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 78/179 (43%), Gaps = 15/179 (8%)
Query: 13 HTASVRSVA--ATSKLAASSGADETVVLYDMVKRKQSGALMQ--HEGTITCLKFTP--EG 66
HT V SVA ++ S G D + +++ VK + L + H ++C++F+P +
Sbjct: 108 HTKDVLSVAFSPDNRQIVSGGRDNALRVWN-VKGECMHTLSRGAHTDWVSCVRFSPSLDA 166
Query: 67 SHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWN 126
++S D + ++ + + +L K H V +++ P G L S KD R W+
Sbjct: 167 PVIVSGGWDNLVKVWDLATGRLVTDLK-GHT-NYVTSVTVSPDGSLCASSDKDGVARLWD 224
Query: 127 LVKGRSAYITNLSSYGVGFENLDSVVWSPEGLLYAIPIQNKAVVFSVEKAGVLQTLKSE 185
L KG + LS G ++ + +SP + +F +E ++ L E
Sbjct: 225 LTKGEA-----LSEMAAGAP-INQICFSPNRYWMCAATEKGIRIFDLENKDIIVELAPE 277
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
+T HS+ + S L S DE+V ++D+ K L H ++ + F +
Sbjct: 107 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 166
Query: 66 GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
GS ++S S DG I+ S Q K V+ + P+GK L+ D TL+ W
Sbjct: 167 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Query: 126 NLVKGR 131
+ KG+
Sbjct: 226 DYSKGK 231
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Query: 2 YTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLK 61
Y L T H+ S + + ASS AD+ + ++ K + H+ I+ +
Sbjct: 19 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 78
Query: 62 FTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKT 121
++ + + L+S SDD ++ I+ V S + K K H V + +P L +S D++
Sbjct: 79 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGH-SNYVFCCNFNPQSNLIVSGSFDES 136
Query: 122 LRTWNLVKGR 131
+R W++ G+
Sbjct: 137 VRIWDVKTGK 146
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
+T HS+ + S L S DE+V ++D+ K L H ++ + F +
Sbjct: 102 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 161
Query: 66 GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
GS ++S S DG I+ S Q K V+ + P+GK L+ D TL+ W
Sbjct: 162 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 220
Query: 126 NLVKGR 131
+ KG+
Sbjct: 221 DYSKGK 226
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Query: 2 YTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLK 61
Y L T H+ S + + ASS AD+ + ++ K + H+ I+ +
Sbjct: 14 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 73
Query: 62 FTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKT 121
++ + + L+S SDD ++ I+ V S + K K H V + +P L +S D++
Sbjct: 74 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGH-SNYVFCCNFNPQSNLIVSGSFDES 131
Query: 122 LRTWNLVKGR 131
+R W++ G+
Sbjct: 132 VRIWDVKTGK 141
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
+T HS+ + S L S DE+V ++D+ K L H ++ + F +
Sbjct: 118 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 177
Query: 66 GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
GS ++S S DG I+ S Q K V+ + P+GK L+ D TL+ W
Sbjct: 178 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 236
Query: 126 NLVKGR 131
+ KG+
Sbjct: 237 DYSKGK 242
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Query: 2 YTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLK 61
Y L T H+ S + + ASS AD+ + ++ K + H+ I+ +
Sbjct: 30 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 89
Query: 62 FTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKT 121
++ + + L+S SDD ++ I+ V S + K K H V + +P L +S D++
Sbjct: 90 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGH-SNYVFCCNFNPQSNLIVSGSFDES 147
Query: 122 LRTWNLVKGR 131
+R W++ G+
Sbjct: 148 VRIWDVKTGK 157
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
+T HS+ + S L S DE+V ++D+ K L H ++ + F +
Sbjct: 125 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 184
Query: 66 GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
GS ++S S DG I+ S Q K V+ + P+GK L+ D TL+ W
Sbjct: 185 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 243
Query: 126 NLVKGR 131
+ KG+
Sbjct: 244 DYSKGK 249
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Query: 2 YTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLK 61
Y L T H+ S + + ASS AD+ + ++ K + H+ I+ +
Sbjct: 37 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 96
Query: 62 FTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKT 121
++ + + L+S SDD ++ I+ V S + K K H V + +P L +S D++
Sbjct: 97 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGH-SNYVFCCNFNPQSNLIVSGSFDES 154
Query: 122 LRTWNLVKGR 131
+R W++ G+
Sbjct: 155 VRIWDVKTGK 164
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
+T HS+ + S L S DE+V ++D+ K L H ++ + F +
Sbjct: 107 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 166
Query: 66 GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
GS ++S S DG I+ S Q K V+ + P+GK L+ D TL+ W
Sbjct: 167 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Query: 126 NLVKGR 131
+ KG+
Sbjct: 226 DYSKGK 231
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Query: 2 YTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLK 61
Y L T H+ S + + ASS AD+ + ++ K + H+ I+ +
Sbjct: 19 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 78
Query: 62 FTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKT 121
++ + + L+S SDD ++ I+ V S + K K H V + +P L +S D++
Sbjct: 79 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGH-SNYVFCCNFNPQSNLIVSGSFDES 136
Query: 122 LRTWNLVKGR 131
+R W++ G+
Sbjct: 137 VRIWDVKTGK 146
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
+T HS+ + S L S DE+V ++D+ K L H ++ + F +
Sbjct: 106 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 165
Query: 66 GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
GS ++S S DG I+ S Q K V+ + P+GK L+ D TL+ W
Sbjct: 166 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 224
Query: 126 NLVKGR 131
+ KG+
Sbjct: 225 DYSKGK 230
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Query: 2 YTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLK 61
Y L T H+ S + + ASS AD+ + ++ K + H+ I+ +
Sbjct: 18 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 77
Query: 62 FTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKT 121
++ + + L+S SDD ++ I+ V S + K K H V + +P L +S D++
Sbjct: 78 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGH-SNYVFCCNFNPQSNLIVSGSFDES 135
Query: 122 LRTWNLVKGR 131
+R W++ G+
Sbjct: 136 VRIWDVKTGK 145
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
+T HS+ + S L S DE+V ++D+ K L H ++ + F +
Sbjct: 123 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 182
Query: 66 GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
GS ++S S DG I+ S Q K V+ + P+GK L+ D TL+ W
Sbjct: 183 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 241
Query: 126 NLVKGR 131
+ KG+
Sbjct: 242 DYSKGK 247
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Query: 2 YTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLK 61
Y L T H+ S + + ASS AD+ + ++ K + H+ I+ +
Sbjct: 35 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 94
Query: 62 FTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKT 121
++ + + L+S SDD ++ I+ V S + K K H V + +P L +S D++
Sbjct: 95 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGH-SNYVFCCNFNPQSNLIVSGSFDES 152
Query: 122 LRTWNLVKGR 131
+R W++ G+
Sbjct: 153 VRIWDVKTGK 162
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
+T HS+ + S L S DE+V ++D+ K L H ++ + F +
Sbjct: 104 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 163
Query: 66 GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
GS ++S S DG I+ S Q K V+ + P+GK L+ D TL+ W
Sbjct: 164 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 126 NLVKGR 131
+ KG+
Sbjct: 223 DYSKGK 228
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 89/210 (42%), Gaps = 16/210 (7%)
Query: 13 HTASVRSVA--ATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI 70
H + VA + S L S+ D+T+ ++D+ K L H + C F P+ + ++
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 126
Query: 71 SCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG 130
S S D S+ I+ V + + K AH V+ + + G L +S D R W+ G
Sbjct: 127 SGSFDESVRIWDVKTGKCLKTL-PAH-SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 131 RS-AYITNLSSYGVGFENLDSVVWSPEG-LLYAIPIQNKAVVFSVEKAGVLQTLKSESKV 188
+ + + + V F V +SP G + A + N ++ K L+T
Sbjct: 185 QCLKTLIDDDNPPVSF-----VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 239
Query: 189 HSVCFLNETT-----VCTGNEESAITAYNL 213
F N + + +G+E++ + +NL
Sbjct: 240 KYCIFANFSVTGGKWIVSGSEDNLVYIWNL 269
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Query: 2 YTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLK 61
Y L T H+ S + + A+S AD+ + ++ K + H+ I+ +
Sbjct: 16 YALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVA 75
Query: 62 FTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKT 121
++ + + L+S SDD ++ I+ V S + K K H V + +P L +S D++
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGH-SNYVFCCNFNPQSNLIVSGSFDES 133
Query: 122 LRTWNLVKGR 131
+R W++ G+
Sbjct: 134 VRIWDVKTGK 143
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
+T HS+ + S L S DE+V ++D+ K L H ++ + F +
Sbjct: 104 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 163
Query: 66 GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
GS ++S S DG I+ S Q K V+ + P+GK L+ D TL+ W
Sbjct: 164 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 126 NLVKGR 131
+ KG+
Sbjct: 223 DYSKGK 228
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Query: 2 YTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLK 61
Y L T H+ S + + ASS AD+ + ++ K + H+ I+ +
Sbjct: 16 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 75
Query: 62 FTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKT 121
++ + + L+S SDD ++ I+ V S + K K H V + +P L +S D++
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGH-SNYVFCCNFNPQSNLIVSGSFDES 133
Query: 122 LRTWNLVKGR 131
+R W++ G+
Sbjct: 134 VRIWDVKTGK 143
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
+T HS+ + S L S DE+V ++D+ K L H ++ + F +
Sbjct: 104 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 163
Query: 66 GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
GS ++S S DG I+ S Q K V+ + P+GK L+ D TL+ W
Sbjct: 164 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 126 NLVKGR 131
+ KG+
Sbjct: 223 DYSKGK 228
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Query: 2 YTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLK 61
Y L T H+ S + + ASS AD+ + ++ K + H+ I+ +
Sbjct: 16 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 75
Query: 62 FTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKT 121
++ + + L+S SDD ++ I+ V S + K K H V + +P L +S D++
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGH-SNYVFCCNFNPQSNLIVSGSFDES 133
Query: 122 LRTWNLVKGR 131
+R W++ G+
Sbjct: 134 VRIWDVKTGK 143
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 70/163 (42%), Gaps = 14/163 (8%)
Query: 28 ASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQ 87
A+ AD+ V ++D K +H + C FT + +HL+ + GS F + W
Sbjct: 680 ATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLAT--GSNDFF-LKLWD 736
Query: 88 L-EKLFKKAHKG--TAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNLSSYGVG 144
L +K + G +VNH P +L S D TLR W++ N+ + +
Sbjct: 737 LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLS 796
Query: 145 FENLDSVV--------WSPEGLLYAIPIQNKAVVFSVEKAGVL 179
E+ V WS +G + +NK ++F + +G+L
Sbjct: 797 SEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLL 839
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 78/187 (41%), Gaps = 21/187 (11%)
Query: 4 LTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFT 63
+ + F H T ++++ + +S+ AD+T ++ L H G + C F+
Sbjct: 1084 IERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFS 1143
Query: 64 PEGSHLISCSDDGSIAIFRVGSWQLEKLFKK--AHKGTA-----VNHISIHPSGKLALSV 116
+G L + D+G I I+ V QL +GTA V + P K +S
Sbjct: 1144 LDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA 1203
Query: 117 GKDKTLRTWNLVKGRSAYITNLSSYGVGFENLDSVVWSPEGLLYAIPIQNKAVVFSVEKA 176
G L+ WN+ G S+ ++ NL + SP+ Y + + N +++
Sbjct: 1204 G--GYLKWWNVATGDSS-----QTFYTNGTNLKKIHVSPDFRTY-VTVDNLGILY----- 1250
Query: 177 GVLQTLK 183
+LQ L+
Sbjct: 1251 -ILQVLE 1256
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 4 LTQTFVTHSHTASVRSVAATSK--LAASSGADETVVLYDMVKRKQSGALMQHEGTITCLK 61
L T+ HS + S L A+ D + L+D+ +++ + H ++ +
Sbjct: 698 LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCR 757
Query: 62 FTPEGSHLISCSDDGSIAIFRVGS 85
F+P+ L SCS DG++ ++ V S
Sbjct: 758 FSPDDELLASCSADGTLRLWDVRS 781
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 54/268 (20%), Positives = 111/268 (41%), Gaps = 35/268 (13%)
Query: 4 LTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFT 63
L + H T + LA + + V L+++ R + H + + F+
Sbjct: 839 LAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFS 898
Query: 64 PEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVN-----HISIHPSGKLALSVGK 118
P+GS ++ SDD +I ++ KK K +A+ + + + L+V
Sbjct: 899 PDGSSFLTASDDQTIRVWET---------KKVCKNSAIVLKQEIDVVFQENETMVLAV-- 947
Query: 119 DKTLRTWNLVKGRSAYITNLSSYGVGF----ENLDSVVWSPE-GLLYAIPIQNKAVVFSV 173
+R L+ G++ I L V +L+ V + E G + I + N VFS
Sbjct: 948 -DNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNR-VFS- 1004
Query: 174 EKAGVLQTLKSESKVHSVCFLNE-TTVCTGNEESAITAYNLTDGSHLWQIKASASRIKGL 232
+GV + V + F + T+ + +E+S I +N G +++ ++A +K
Sbjct: 1005 --SGV----GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKD- 1056
Query: 233 VFFSIPQETTVCTGNEESAITAYNLTDG 260
F + Q++ + + + + + +N+ G
Sbjct: 1057 --FRLLQDSRLLSWSFDGTVKVWNVITG 1082
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 70/163 (42%), Gaps = 14/163 (8%)
Query: 28 ASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQ 87
A+ AD+ V ++D K +H + C FT + +HL+ + GS F + W
Sbjct: 673 ATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLAT--GSNDFF-LKLWD 729
Query: 88 L-EKLFKKAHKG--TAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNLSSYGVG 144
L +K + G +VNH P +L S D TLR W++ N+ + +
Sbjct: 730 LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLS 789
Query: 145 FENLDSVV--------WSPEGLLYAIPIQNKAVVFSVEKAGVL 179
E+ V WS +G + +NK ++F + +G+L
Sbjct: 790 SEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLL 832
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 78/187 (41%), Gaps = 21/187 (11%)
Query: 4 LTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFT 63
+ + F H T ++++ + +S+ AD+T ++ L H G + C F+
Sbjct: 1077 IERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFS 1136
Query: 64 PEGSHLISCSDDGSIAIFRVGSWQLEKLFK--KAHKGTA-----VNHISIHPSGKLALSV 116
+G L + D+G I I+ V QL +GTA V + P K +S
Sbjct: 1137 LDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA 1196
Query: 117 GKDKTLRTWNLVKGRSAYITNLSSYGVGFENLDSVVWSPEGLLYAIPIQNKAVVFSVEKA 176
G L+ WN+ G S+ ++ NL + SP+ Y + + N +++
Sbjct: 1197 G--GYLKWWNVATGDSS-----QTFYTNGTNLKKIHVSPDFRTY-VTVDNLGILY----- 1243
Query: 177 GVLQTLK 183
+LQ L+
Sbjct: 1244 -ILQVLE 1249
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 4 LTQTFVTHSHTASVRSVAATSK--LAASSGADETVVLYDMVKRKQSGALMQHEGTITCLK 61
L T+ HS + S L A+ D + L+D+ +++ + H ++ +
Sbjct: 691 LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCR 750
Query: 62 FTPEGSHLISCSDDGSIAIFRVGS 85
F+P+ L SCS DG++ ++ V S
Sbjct: 751 FSPDDELLASCSADGTLRLWDVRS 774
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 54/268 (20%), Positives = 111/268 (41%), Gaps = 35/268 (13%)
Query: 4 LTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFT 63
L + H T + LA + + V L+++ R + H + + F+
Sbjct: 832 LAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFS 891
Query: 64 PEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVN-----HISIHPSGKLALSVGK 118
P+GS ++ SDD +I ++ KK K +A+ + + + L+V
Sbjct: 892 PDGSSFLTASDDQTIRVWET---------KKVCKNSAIVLKQEIDVVFQENETMVLAV-- 940
Query: 119 DKTLRTWNLVKGRSAYITNLSSYGVGF----ENLDSVVWSPE-GLLYAIPIQNKAVVFSV 173
+R L+ G++ I L V +L+ V + E G + I + N VFS
Sbjct: 941 -DNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNR-VFS- 997
Query: 174 EKAGVLQTLKSESKVHSVCFLNE-TTVCTGNEESAITAYNLTDGSHLWQIKASASRIKGL 232
+GV + V + F + T+ + +E+S I +N G +++ ++A +K
Sbjct: 998 --SGV----GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKD- 1049
Query: 233 VFFSIPQETTVCTGNEESAITAYNLTDG 260
F + Q++ + + + + + +N+ G
Sbjct: 1050 --FRLLQDSRLLSWSFDGTVKVWNVITG 1075
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 68/138 (49%), Gaps = 15/138 (10%)
Query: 3 TLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVK--RKQSGALMQHEGTITCL 60
T + FV H + + ++ S+GA+ + L++++ + S H ++C+
Sbjct: 109 TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCV 168
Query: 61 KFTP----------EGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSG 110
+++P + S DG + ++ ++Q+ FK AH+ + VNH+SI P+G
Sbjct: 169 RYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFK-AHE-SNVNHLSISPNG 225
Query: 111 KLALSVGKDKTLRTWNLV 128
K + GKDK L W+++
Sbjct: 226 KYIATGGKDKKLLIWDIL 243
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 14/110 (12%)
Query: 32 ADETVVLYDMVKRKQSGALMQHEGTITCL------KFTPEGSHLISCSDDGSIAIFRVGS 85
AD + + +VKR G L H +T + K + LIS S D ++ I+++
Sbjct: 2 ADNSSLDIQVVKR---GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYE 58
Query: 86 WQLEKLFKKAHKG-TAVNH----ISIHPSGKLALSVGKDKTLRTWNLVKG 130
+ F HK T NH +++ A+S DKTLR W+L G
Sbjct: 59 EEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTG 108
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/82 (20%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 2 YTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLK 61
+ + TF H + S++ K A+ G D+ ++++D++ TI +
Sbjct: 203 FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIA 262
Query: 62 FTPEGSHLISCSDDGSIAIFRV 83
F P+ + +D G + IF +
Sbjct: 263 FNPKLQWVAVGTDQG-VKIFNL 283
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 71/162 (43%), Gaps = 13/162 (8%)
Query: 4 LTQTFVTHSHTASVRSV----AATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITC 59
L Q+F H H A V + + T S G D+ +++DM + A HE +
Sbjct: 188 LLQSF--HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNS 245
Query: 60 LKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKD 119
+++ P G S SDD + ++ + + + ++ K + + SG+L + D
Sbjct: 246 VRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYND 305
Query: 120 KTLRTWNLVKGRSAYITNLSSYGVGFEN-LDSVVWSPEGLLY 160
T+ W+++KG I G EN + ++ SP+G +
Sbjct: 306 YTINVWDVLKGSRVSIL------FGHENRVSTLRVSPDGTAF 341
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 65/150 (43%), Gaps = 12/150 (8%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQ----HEGTITCLK 61
++ H++ S S + ++ D T L+D+ +SG L+Q H + CL
Sbjct: 148 KSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDV----ESGQLLQSFHGHGADVLCLD 203
Query: 62 FTPE--GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKD 119
P G+ +S D ++ + S Q + F + H+ + VN + +PSG S D
Sbjct: 204 LAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF-ETHE-SDVNSVRYYPSGDAFASGSDD 261
Query: 120 KTLRTWNLVKGRSAYITNLSSYGVGFENLD 149
T R ++L R I + S G ++D
Sbjct: 262 ATCRLYDLRADREVAIYSKESIIFGASSVD 291
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 15/126 (11%)
Query: 40 DMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGT 99
+M +K+S A+ H ++ FT +++ S DG+ A++ V S QL + F G
Sbjct: 142 NMAAKKKSVAM--HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHG--HGA 197
Query: 100 AVNHISIHPS--GKLALSVGKDKTLRTWNLVKGR--SAYITNLSSYGVGFENLDSVVWSP 155
V + + PS G +S G DK W++ G+ A+ T+ S +++SV + P
Sbjct: 198 DVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHES-------DVNSVRYYP 250
Query: 156 EGLLYA 161
G +A
Sbjct: 251 SGDAFA 256
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 36/67 (53%)
Query: 15 ASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSD 74
AS + + +L + D T+ ++D++K + L HE ++ L+ +P+G+ S S
Sbjct: 287 ASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSW 346
Query: 75 DGSIAIF 81
D ++ ++
Sbjct: 347 DHTLRVW 353
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 9 VTHSHTASVRSVA--ATSKLAASSGADETVVLYDMVKRKQ--SGALMQHEGTITCLKFTP 64
V +SHT V+ V + +L AS+ D+TV LY + L HE T+ L F P
Sbjct: 145 VLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDP 204
Query: 65 EGSHLISCSDDGSIAIFR 82
G L SCSDD ++ I+R
Sbjct: 205 SGQRLASCSDDRTVRIWR 222
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 9/120 (7%)
Query: 60 LKFTPEGSHLISCSDDGSIAIFRV--GSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVG 117
L + P G+ L SC D I I+ SW + + + H+ T V ++ P G S
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRT-VRKVAWSPCGNYLASAS 80
Query: 118 KDKTLRTWNLVKGRSAYITNLSSYGVGFEN-LDSVVWSPEGLLYAIPIQNKAV-VFSVEK 175
D T W + +T L G EN + SV W+P G L A ++K+V V+ V++
Sbjct: 81 FDATTCIWKKNQDDFECVTTLE----GHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDE 136
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Query: 53 HEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKL 112
H+ T+ + ++P G++L S S D + I++ E + V ++ PSG L
Sbjct: 60 HQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNL 119
Query: 113 ALSVGKDKTLRTWNLVKGRSAY--ITNLSSYGVGFENLDSVVWSPEGLLYA 161
+ +DK++ W V Y ++ L+S+ +++ VVW P L A
Sbjct: 120 LATCSRDKSVWVWE-VDEEDEYECVSVLNSHT---QDVKHVVWHPSQELLA 166
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 9/120 (7%)
Query: 13 HTASVRSVA--ATSKLAASSGADETVVLYDMVKRKQS---GALMQHEGTITCLKFTPEGS 67
H V+SVA + L A+ D++V ++++ + + L H + + + P
Sbjct: 104 HENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE 163
Query: 68 HLISCSDDGSIAIFRV--GSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
L S S D ++ ++R W + H+ T V ++ PSG+ S D+T+R W
Sbjct: 164 LLASASYDDTVKLYREEEDDWVCCATLE-GHEST-VWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 53 HEGTITCLKFTP-EGSHLISCSDDGSIAIFR 82
H + C+ + P E L SCSDDG +A ++
Sbjct: 302 HSQDVNCVAWNPKEPGLLASCSDDGEVAFWK 332
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 95 AHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNLSSYGVGFENLDSVVWS 154
AH + ++ +P+G L S G D+ +R W +G S ++ S G + V WS
Sbjct: 13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWG-TEGDSWICKSVLSEGHQ-RTVRKVAWS 70
Query: 155 PEG 157
P G
Sbjct: 71 PCG 73
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 1/126 (0%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
+T HS+ + S L S DE+V ++D+ L H ++ + F +
Sbjct: 104 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRD 163
Query: 66 GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
GS ++S S DG I+ S Q K V+ + P+GK L+ D TL+ W
Sbjct: 164 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 126 NLVKGR 131
+ KG+
Sbjct: 223 DYSKGK 228
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 60/129 (46%), Gaps = 2/129 (1%)
Query: 2 YTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLK 61
Y L T H+ S + + ASS AD+ + ++ K + H+ I+ +
Sbjct: 16 YALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 75
Query: 62 FTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKT 121
++ + + L+S SDD ++ I+ V S + K K H V + +P L +S D++
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGH-SNYVFCCNFNPQSNLIVSGSFDES 133
Query: 122 LRTWNLVKG 130
+R W++ G
Sbjct: 134 VRIWDVKTG 142
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/147 (21%), Positives = 64/147 (43%), Gaps = 8/147 (5%)
Query: 91 LFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNLSSYGVGFENLDS 150
+F A AV+ + P+G+ S DK ++ W G+ + +S + +G +
Sbjct: 19 MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISD--- 73
Query: 151 VVWSPEGLLYAIPIQNKAV-VFSVEKAGVLQTLKSESKVHSVCFLNETT--VCTGNEESA 207
V WS + L +K + ++ V L+TLK S C N + + +G+ + +
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 208 ITAYNLTDGSHLWQIKASASRIKGLVF 234
+ +++ G L + A + + + F
Sbjct: 134 VRIWDVKTGMCLKTLPAHSDPVSAVHF 160
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 4/115 (3%)
Query: 13 HTASVRSVA--ATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI 70
HT SV+ ++ + KL AS AD T+ L+D + + H+ ++ + P G H++
Sbjct: 149 HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIV 208
Query: 71 SCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
S S D +I ++ V + K F H+ V + + G L S D+T+R W
Sbjct: 209 SASRDKTIKMWEVQTGYCVKTF-TGHR-EWVRMVRPNQDGTLIASCSNDQTVRVW 261
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 58/158 (36%), Gaps = 22/158 (13%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
+TF H + L AS D+TV ++ + ++ L +H + C+ + PE
Sbjct: 228 KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPE 287
Query: 66 GSH--------------------LISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHIS 105
S+ L+S S D +I ++ V + L V +
Sbjct: 288 SSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC--LMTLVGHDNWVRGVL 345
Query: 106 IHPSGKLALSVGKDKTLRTWNLVKGRSAYITNLSSYGV 143
H GK LS DKTLR W+ R N + V
Sbjct: 346 FHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFV 383
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 26 LAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGS 85
+ S+ D T+ ++D L H ++ + F G L SCS D +I ++
Sbjct: 122 VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181
Query: 86 WQ-LEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG 130
++ + + H V+ +SI P+G +S +DKT++ W + G
Sbjct: 182 FECIRTMHGHDHN---VSSVSIMPNGDHIVSASRDKTIKMWEVQTG 224
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 49 ALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHP 108
AL H +T + F P S ++S S+D +I ++ + E+ K H +V IS
Sbjct: 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL-KGHTD-SVQDISFDH 160
Query: 109 SGKLALSVGKDKTLRTWNL 127
SGKL S D T++ W+
Sbjct: 161 SGKLLASCSADMTIKLWDF 179
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 101/223 (45%), Gaps = 18/223 (8%)
Query: 5 TQTFVTHSHTASVRSVAAT--SKLAASSGADETVVLYDMV---KRKQSGALMQHEGTITC 59
T+ FV HT V SVA + ++ S+ D T+ L++ + K S H ++C
Sbjct: 465 TRRFV--GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSC 522
Query: 60 LKFTPEGSH--LISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVG 117
++F+P ++S S D ++ ++ + + +L H G V+ +++ P G L S G
Sbjct: 523 VRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA-GHTGY-VSTVAVSPDGSLCASGG 580
Query: 118 KDKTLRTWNLVKGRSAYITNLSSYGVGFENLDSVVWSPEGLLYAIPIQNKAVVFSVEKAG 177
KD + W+L +G+ Y +S + ++ +SP ++ ++ +E
Sbjct: 581 KDGVVLLWDLAEGKKLYSLEANSV------IHALCFSPNRYWLCAATEHGIKIWDLESKS 634
Query: 178 VLQTLKSESKVHSVCFLNETTVCTGNEESAITAYNLT-DGSHL 219
+++ LK + K + N T + T+ N + DGS L
Sbjct: 635 IVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTL 677
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 45/218 (20%), Positives = 94/218 (43%), Gaps = 29/218 (13%)
Query: 2 YTLTQTFVT-HSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCL 60
Y + Q +T HSH +++ + A S D + L+D+ + + H + +
Sbjct: 419 YGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSV 478
Query: 61 KFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKG--TAVNHISIHPS--GKLALSV 116
F+ + ++S S D +I ++ + + + +G V+ + P+ +S
Sbjct: 479 AFSLDNRQIVSASRDRTIKLWNTLG-ECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSA 537
Query: 117 GKDKTLRTWNL--------VKGRSAYITNLSSYGVGFENLDSVVWSPEGLLYAIPIQNKA 168
DKT++ WNL + G + Y++ +V SP+G L A ++
Sbjct: 538 SWDKTVKVWNLSNCKLRSTLAGHTGYVS-------------TVAVSPDGSLCASGGKDGV 584
Query: 169 V-VFSVEKAGVLQTLKSESKVHSVCF-LNETTVCTGNE 204
V ++ + + L +L++ S +H++CF N +C E
Sbjct: 585 VLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAATE 622
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 4 LTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFT 63
L T H+ S +V+ L AS G D V+L+D+ + K+ +L + I L F+
Sbjct: 553 LRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL-EANSVIHALCFS 611
Query: 64 PEGSHLISCSDDGSIAIFRVGSWQLE 89
P L + ++ G + W LE
Sbjct: 612 PNRYWLCAATEHG------IKIWDLE 631
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 72/172 (41%), Gaps = 14/172 (8%)
Query: 19 SVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSI 78
+ + + A+ D+ V +++ + + +H + C FT HL+ + GS
Sbjct: 670 AFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLAT--GSS 727
Query: 79 AIFRVGSWQL-EKLFKKAHKG--TAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYI 135
F + W L +K + G +VNH P KL S D TL+ W+
Sbjct: 728 DCF-LKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKS 786
Query: 136 TNLSSYGVGF----ENLDSVV----WSPEGLLYAIPIQNKAVVFSVEKAGVL 179
N+ + + E+++ +V WS +G + +NK +F + +G+L
Sbjct: 787 INVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLL 838
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 8/119 (6%)
Query: 15 ASVRSVAATSKLAASSGADET--VVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISC 72
A V + L + DE + + ++V + + QH+ T+ ++FT + LIS
Sbjct: 968 AQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISS 1027
Query: 73 SDDGSIAIFRVGSWQLEK-LFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG 130
SDD I +V +WQL+K +F + H+ T V + + +L LS D T++ WN++ G
Sbjct: 1028 SDDAEI---QVWNWQLDKCIFLRGHQET-VKDFRLLKNSRL-LSWSFDGTVKVWNIITG 1081
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 80/184 (43%), Gaps = 20/184 (10%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
+ FV H T ++ + +S+ AD+T ++ L H G + C F+ +
Sbjct: 1085 KDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVD 1144
Query: 66 GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNH------ISIHPSGKLALSVGKD 119
+ L + D+G I I+ V + +L L + A H + P GK+ +S G
Sbjct: 1145 STLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAG-- 1202
Query: 120 KTLRTWNLVKGRSAYITNLSSYGVGFENLDSVVWSPEGLLYAIPIQNKAVVFSVEKAGVL 179
++ WN+V G S+ ++ NL + SP+ Y + + N +++ +L
Sbjct: 1203 GYIKWWNVVTGESS-----QTFYTNGTNLKKIHVSPDFKTY-VTVDNLGILY------IL 1250
Query: 180 QTLK 183
QTL+
Sbjct: 1251 QTLE 1254
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 4 LTQTFVTHSHTASVRSVAATSK--LAASSGADETVVLYDMVKRKQSGALMQHEGTITCLK 61
L T+ HS + +S L A+ +D + L+D+ +++ + H ++ +
Sbjct: 697 LVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCR 756
Query: 62 FTPEGSHLISCSDDGSIAIFRVGS 85
F+P+ L SCS DG++ ++ S
Sbjct: 757 FSPDDKLLASCSADGTLKLWDATS 780
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 9/118 (7%)
Query: 20 VAATSKLAASSGADETVVLYDMVKRKQSGALMQ-----HEGTITCLKFTPEGSHLISCSD 74
V +KL A D ++ + + +K L + H + F+ +G + SC
Sbjct: 582 VYQQAKLQAKQEVDNGMLYLEWINKKNITNLSRLVVRPHTDAVYHACFSEDGQRIASCGA 641
Query: 75 DGSIAIFRVGSWQLEKLFK-KAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGR 131
D ++ +F+ + EKL + KAH+ + + + + DK ++ WN + G
Sbjct: 642 DKTLQVFKAETG--EKLLEIKAHEDEVLC-CAFSTDDRFIATCSVDKKVKIWNSMTGE 696
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 44/220 (20%), Positives = 84/220 (38%), Gaps = 32/220 (14%)
Query: 11 HSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI 70
H T + + LA + + V L++ R + H + + F+P+GS +
Sbjct: 845 HHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFL 904
Query: 71 SCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVN-----HISIHPSGKLALSVGKDKTLRTW 125
+ SDD +I ++ KK K +AV + + + L+V +R
Sbjct: 905 TSSDDQTIRLWET---------KKVCKNSAVMLKQEVDVVFQENEVMVLAVDH---IRRL 952
Query: 126 NLVKGRSAYITNLSSYGVGFENLDSVVWSPEGLLYAIPIQNKAV-VFSVEKAGVLQTLKS 184
L+ GR+ I L+ V SP A +N A+ + + + Q+
Sbjct: 953 QLINGRTGQIDYLTEAQVS-----CCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQ 1007
Query: 185 ESKV--HSVCFLNETTVCTGNEESAITAYNLTDGSHLWQI 222
K H +E T+ + ++++ I +N WQ+
Sbjct: 1008 HKKTVWHIQFTADEKTLISSSDDAEIQVWN-------WQL 1040
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 13 HTASVRSVA--ATSKLAASSGADETVVLYDMVKRKQSGAL-------MQHEGTITCLKFT 63
HT V SV L AS+G D T+VLY+ V ++G + H G++ L ++
Sbjct: 189 HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS 248
Query: 64 PEGSHLISCSDDGSIAIFRVGSWQLEK 90
P+G+ + S S D +I I+ V + ++EK
Sbjct: 249 PDGTKIASASADKTIKIWNVATLKVEK 275
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Query: 30 SGADE-TVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIF------R 82
SG+D+ TV +++ K +H + +++ P+GS S DG+I ++ +
Sbjct: 165 SGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK 224
Query: 83 VGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNL 127
G ++ + L AH G+ V ++ P G S DKT++ WN+
Sbjct: 225 TGVFEDDSLKNVAHSGS-VFGLTWSPDGTKIASASADKTIKIWNV 268
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 71/161 (44%), Gaps = 16/161 (9%)
Query: 36 VVLYDMVKRKQSGALMQHEGTITCLKFTPEGS-HLISCSDDGSIAIFRVGSWQLEKLFKK 94
V L+D +G L + + F P +IS SDD ++AIF ++ + F +
Sbjct: 131 VFLFDT--GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE 188
Query: 95 AHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG------RSAYITNLSSYGVGFENL 148
K V+ + +P G L S G D T+ +N V G + N++ G F
Sbjct: 189 HTK--FVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVF--- 243
Query: 149 DSVVWSPEGLLYAIPIQNKAV-VFSVEKAGVLQTLKSESKV 188
+ WSP+G A +K + +++V V +T+ +++
Sbjct: 244 -GLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI 283
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 151 VVWSPEGLLYAI-PIQNKAVVFSVEKAG----VLQTLKSESKVHSVCFLNETTVCTGNEE 205
V WSP+ + A + N +V+++ K +++ + S V+SV +LNETT+ + ++
Sbjct: 542 VSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQD 601
Query: 206 SAITAYNL 213
S I +N+
Sbjct: 602 SNIKFWNV 609
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 1/126 (0%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
+T HS+ + S L S DE+V ++D+ L H ++ + F +
Sbjct: 104 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRD 163
Query: 66 GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
GS ++S S DG I+ S Q K V+ + P+GK L+ D L+ W
Sbjct: 164 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNDLKLW 222
Query: 126 NLVKGR 131
+ KG+
Sbjct: 223 DYSKGK 228
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 60/129 (46%), Gaps = 2/129 (1%)
Query: 2 YTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLK 61
Y L T H+ S + + ASS AD+ + ++ K + H+ I+ +
Sbjct: 16 YALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 75
Query: 62 FTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKT 121
++ + + L+S SDD ++ I+ V S + K K H V + +P L +S D++
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGH-SNYVFCCNFNPQSNLIVSGSFDES 133
Query: 122 LRTWNLVKG 130
+R W++ G
Sbjct: 134 VRIWDVKTG 142
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/147 (21%), Positives = 64/147 (43%), Gaps = 8/147 (5%)
Query: 91 LFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNLSSYGVGFENLDS 150
+F A AV+ + P+G+ S DK ++ W G+ + +S + +G +
Sbjct: 19 MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISD--- 73
Query: 151 VVWSPEGLLYAIPIQNKAV-VFSVEKAGVLQTLKSESKVHSVCFLNETT--VCTGNEESA 207
V WS + L +K + ++ V L+TLK S C N + + +G+ + +
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 208 ITAYNLTDGSHLWQIKASASRIKGLVF 234
+ +++ G L + A + + + F
Sbjct: 134 VRIWDVKTGMCLKTLPAHSDPVSAVHF 160
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 92/201 (45%), Gaps = 15/201 (7%)
Query: 60 LKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKD 119
L +P+ SC DG+IA++ + + L + F+ G + I I G + G D
Sbjct: 147 LAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC--IDISNDGTKLWTGGLD 204
Query: 120 KTLRTWNLVKGRSAYITNLSSYGVGFENLDSVVWSPEGLLYAIPIQNKAV-VFSVEKAGV 178
T+R+W+L +GR + +S + S+ + P G A+ +++ V V V K
Sbjct: 205 NTVRSWDLREGRQLQQHDFTS------QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK 258
Query: 179 LQTLKSESKVHSVCF--LNETTVCTGNEESAITAYNLTDGSHLWQIKASASRIKGLVFFS 236
Q ES V S+ F + V TG +++ + A+ G+ ++Q K S+S + +
Sbjct: 259 YQLHLHESCVLSLKFAYCGKWFVSTG-KDNLLNAWRTPYGASIFQSKESSSVLSCDISV- 316
Query: 237 IPQETTVCTGNEESAITAYNL 257
+ + TG+ + T Y +
Sbjct: 317 --DDKYIVTGSGDKKATVYEV 335
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 87/186 (46%), Gaps = 9/186 (4%)
Query: 11 HSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI 70
HSH S +++ + A S D T+ L+D+ + + H + + F+ + ++
Sbjct: 62 HSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIV 121
Query: 71 SCSDDGSIAIFR-VGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVK 129
S S D +I ++ +G + + + + S + S + +S G DK ++ WNL
Sbjct: 122 SGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 181
Query: 130 GRSAYITNLSSYGVGFEN-LDSVVWSPEGLLYAIPIQN-KAVVFSVEKAGVLQTLKSESK 187
+ L + +G L++V SP+G L A ++ +A+++ + + L TL
Sbjct: 182 CK------LKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI 235
Query: 188 VHSVCF 193
++++CF
Sbjct: 236 INALCF 241
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 87/186 (46%), Gaps = 9/186 (4%)
Query: 11 HSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI 70
HSH S +++ + A S D T+ L+D+ + + H + + F+ + ++
Sbjct: 85 HSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIV 144
Query: 71 SCSDDGSIAIFR-VGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVK 129
S S D +I ++ +G + + + + S + S + +S G DK ++ WNL
Sbjct: 145 SGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 204
Query: 130 GRSAYITNLSSYGVGFEN-LDSVVWSPEGLLYAIPIQN-KAVVFSVEKAGVLQTLKSESK 187
+ L + +G L++V SP+G L A ++ +A+++ + + L TL
Sbjct: 205 CK------LKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI 258
Query: 188 VHSVCF 193
++++CF
Sbjct: 259 INALCF 264
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 93/197 (47%), Gaps = 19/197 (9%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
++F HSH ++ A A S+ D+T+ L+D+ + + H+ + + +
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK 118
Query: 66 GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLA------LSVGKD 119
S +IS S D +I ++ + L L H V+ + + P+ K +S G D
Sbjct: 119 ASMIISGSRDKTIKVWTIKGQCLATLL--GHNDW-VSQVRVVPNEKADDDSVTIISAGND 175
Query: 120 KTLRTWNL--VKGRSAYITNLSSYGVGFENLDSVVWSPEGLLYAIPIQN-KAVVFSVEKA 176
K ++ WNL + + +I + S N++++ SP+G L A ++ + +++++
Sbjct: 176 KMVKAWNLNQFQIEADFIGHNS-------NINTLTASPDGTLIASAGKDGEIMLWNLAAK 228
Query: 177 GVLQTLKSESKVHSVCF 193
+ TL ++ +V S+ F
Sbjct: 229 KAMYTLSAQDEVFSLAF 245
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 93/197 (47%), Gaps = 19/197 (9%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
++F HSH ++ A A S+ D+T+ L+D+ + + H+ + + +
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK 118
Query: 66 GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLA------LSVGKD 119
S +IS S D +I ++ + L L H V+ + + P+ K +S G D
Sbjct: 119 ASMIISGSRDKTIKVWTIKGQCLATLL--GHN-DWVSQVRVVPNEKADDDSVTIISAGND 175
Query: 120 KTLRTWNL--VKGRSAYITNLSSYGVGFENLDSVVWSPEGLLYAIPIQN-KAVVFSVEKA 176
K ++ WNL + + +I + S N++++ SP+G L A ++ + +++++
Sbjct: 176 KMVKAWNLNQFQIEADFIGHNS-------NINTLTASPDGTLIASAGKDGEIMLWNLAAK 228
Query: 177 GVLQTLKSESKVHSVCF 193
+ TL ++ +V S+ F
Sbjct: 229 KAMYTLSAQDEVFSLAF 245
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 93/197 (47%), Gaps = 19/197 (9%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
++F HSH ++ A A S+ D+T+ L+D+ + + H+ + + +
Sbjct: 53 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK 112
Query: 66 GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLA------LSVGKD 119
S +IS S D +I ++ + L L H V+ + + P+ K +S G D
Sbjct: 113 ASMIISGSRDKTIKVWTIKGQCLATLL--GHN-DWVSQVRVVPNEKADDDSVTIISAGND 169
Query: 120 KTLRTWNL--VKGRSAYITNLSSYGVGFENLDSVVWSPEGLLYAIPIQN-KAVVFSVEKA 176
K ++ WNL + + +I + S N++++ SP+G L A ++ + +++++
Sbjct: 170 KMVKAWNLNQFQIEADFIGHNS-------NINTLTASPDGTLIASAGKDGEIMLWNLAAK 222
Query: 177 GVLQTLKSESKVHSVCF 193
+ TL ++ +V S+ F
Sbjct: 223 KAMYTLSAQDEVFSLAF 239
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 93/197 (47%), Gaps = 19/197 (9%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
++F HSH ++ A A S+ D+T+ L+D+ + + H+ + + +
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK 118
Query: 66 GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLA------LSVGKD 119
S +IS S D +I ++ + L L H V+ + + P+ K +S G D
Sbjct: 119 ASMIISGSRDKTIKVWTIKGQCLATLL--GHN-DWVSQVRVVPNEKADDDSVTIISAGND 175
Query: 120 KTLRTWNL--VKGRSAYITNLSSYGVGFENLDSVVWSPEGLLYAIPIQN-KAVVFSVEKA 176
K ++ WNL + + +I + S N++++ SP+G L A ++ + +++++
Sbjct: 176 KMVKAWNLNQFQIEADFIGHNS-------NINTLTASPDGTLIASAGKDGEIMLWNLAAK 228
Query: 177 GVLQTLKSESKVHSVCF 193
+ TL ++ +V S+ F
Sbjct: 229 KAMYTLSAQDEVFSLAF 245
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 93/197 (47%), Gaps = 19/197 (9%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
++F HSH ++ A A S+ D+T+ L+D+ + + H+ + + +
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK 118
Query: 66 GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLA------LSVGKD 119
S +IS S D +I ++ + L L H V+ + + P+ K +S G D
Sbjct: 119 ASMIISGSRDKTIKVWTIKGQCLATLL--GHN-DWVSQVRVVPNEKADDDSVTIISAGND 175
Query: 120 KTLRTWNL--VKGRSAYITNLSSYGVGFENLDSVVWSPEGLLYAIPIQN-KAVVFSVEKA 176
K ++ WNL + + +I + S N++++ SP+G L A ++ + +++++
Sbjct: 176 KMVKAWNLNQFQIEADFIGHNS-------NINTLTASPDGTLIASAGKDGEIMLWNLAAK 228
Query: 177 GVLQTLKSESKVHSVCF 193
+ TL ++ +V S+ F
Sbjct: 229 KAMYTLSAQDEVFSLAF 245
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 91/197 (46%), Gaps = 19/197 (9%)
Query: 6 QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
++F HSH ++ A A S+ D+T+ L+D+ + + H+ + + +
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKK 118
Query: 66 GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLA------LSVGKD 119
S +IS S D +I ++ + L L H V+ + + P+ K +S G D
Sbjct: 119 ASXIISGSRDKTIKVWTIKGQCLATLL--GHN-DWVSQVRVVPNEKADDDSVTIISAGND 175
Query: 120 KTLRTWNL--VKGRSAYITNLSSYGVGFENLDSVVWSPEGLLYAIPIQNKAV-VFSVEKA 176
K ++ WNL + + +I + S N++++ SP+G L A ++ + ++++
Sbjct: 176 KXVKAWNLNQFQIEADFIGHNS-------NINTLTASPDGTLIASAGKDGEIXLWNLAAK 228
Query: 177 GVLQTLKSESKVHSVCF 193
TL ++ +V S+ F
Sbjct: 229 KAXYTLSAQDEVFSLAF 245
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 2/125 (1%)
Query: 13 HTASVRSV--AATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI 70
HT V S+ A ++L S D + L+D+ + HE I + F P G+
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 71 SCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG 130
+ SDD + +F + + Q + + + +S SG+L L+ D W+ +K
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 131 RSAYI 135
A +
Sbjct: 303 DRAGV 307
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 3/104 (2%)
Query: 24 SKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRV 83
+++ SSG D T L+D+ +Q+ H G + L P+ +S + D S ++ V
Sbjct: 155 NQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Query: 84 GSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNL 127
+ F H+ + +N I P+G + D T R ++L
Sbjct: 214 REGMCRQTF-TGHE-SDINAICFFPNGNAFATGSDDATCRLFDL 255
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 2/125 (1%)
Query: 13 HTASVRSV--AATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI 70
HT V S+ A ++L S D + L+D+ + HE I + F P G+
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 71 SCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG 130
+ SDD + +F + + Q + + + +S SG+L L+ D W+ +K
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 131 RSAYI 135
A +
Sbjct: 303 DRAGV 307
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 3/104 (2%)
Query: 24 SKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRV 83
+++ SSG D T L+D+ +Q+ H G + L P+ +S + D S ++ V
Sbjct: 155 NQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Query: 84 GSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNL 127
+ F H+ + +N I P+G + D T R ++L
Sbjct: 214 REGMCRQTF-TGHE-SDINAICFFPNGNAFATGSDDATCRLFDL 255
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 2/123 (1%)
Query: 13 HTASVRSV--AATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI 70
HT V S+ A ++L S D + L+D+ + HE I + F P G+
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 71 SCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG 130
+ SDD + +F + + Q + + + +S SG+L L+ D W+ +K
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 131 RSA 133
A
Sbjct: 303 DRA 305
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 3/104 (2%)
Query: 24 SKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRV 83
+++ SSG D T L+D+ +Q+ H G + L P+ +S + D S ++ V
Sbjct: 155 NQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Query: 84 GSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNL 127
+ F H+ + +N I P+G + D T R ++L
Sbjct: 214 REGMCRQTF-TGHE-SDINAICFFPNGNAFATGSDDATCRLFDL 255
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 2/123 (1%)
Query: 13 HTASVRSV--AATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI 70
HT V S+ A ++L S D + L+D+ + HE I + F P G+
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 71 SCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG 130
+ SDD + +F + + Q + + + +S SG+L L+ D W+ +K
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 131 RSA 133
A
Sbjct: 303 DRA 305
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 3/104 (2%)
Query: 24 SKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRV 83
+++ SSG D T L+D+ +Q+ H G + L P+ +S + D S ++ V
Sbjct: 155 NQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Query: 84 GSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNL 127
+ F H+ + +N I P+G + D T R ++L
Sbjct: 214 REGMCRQTF-TGHE-SDINAICFFPNGNAFATGSDDATCRLFDL 255
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 2/125 (1%)
Query: 13 HTASVRSV--AATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI 70
HT V S+ A ++L S D + L+D+ + HE I + F P G+
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 253
Query: 71 SCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG 130
+ SDD + +F + + Q + + + +S SG+L L+ D W+ +K
Sbjct: 254 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 313
Query: 131 RSAYI 135
A +
Sbjct: 314 DRAGV 318
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 3/104 (2%)
Query: 24 SKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRV 83
+++ SSG D T L+D+ +Q+ H G + L P+ +S + D S ++ V
Sbjct: 166 NQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 224
Query: 84 GSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNL 127
+ F H+ + +N I P+G + D T R ++L
Sbjct: 225 REGMCRQTF-TGHE-SDINAICFFPNGNAFATGSDDATCRLFDL 266
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/215 (20%), Positives = 90/215 (41%), Gaps = 13/215 (6%)
Query: 1 KYTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCL 60
K TL + HT SV + ++ + +D TV ++D+ + L+ H + L
Sbjct: 160 KNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHL 219
Query: 61 KFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKG--TAVNHISIHPSGKLALSVGK 118
+F +++CS D SIA++ + S + ++ G AVN + K +S
Sbjct: 220 RFN--NGMMVTCSKDRSIAVWDMAS-PTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG 274
Query: 119 DKTLRTWNLVKGRSAYITNLSSYGVGFENLDSVVWSPEGLLYAIPIQNKAVVFSVEKAGV 178
D+T++ WN ++ L+ + G L + L+ + N ++ +E
Sbjct: 275 DRTIKVWN--TSTCEFVRTLNGHKRGIACLQ----YRDRLVVSGSSDNTIRLWDIECGAC 328
Query: 179 LQTLKSESKVHSVCFLNETTVCTGNEESAITAYNL 213
L+ L+ ++ + + +G + I ++L
Sbjct: 329 LRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDL 363
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 58/137 (42%), Gaps = 25/137 (18%)
Query: 11 HSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQ----HEGTITCLKFTPEG 66
+ H + + +L S +D T+ L+D+ + GA ++ HE + C++F +
Sbjct: 293 NGHKRGIACLQYRDRLVVSGSSDNTIRLWDI----ECGACLRVLEGHEELVRCIRF--DN 346
Query: 67 SHLISCSDDGSIAIFRVGSWQL-EKLFKKAHKGTAVNHISIHPSGKL---------ALSV 116
++S + DG I + W L L +A GT + SG++ +S
Sbjct: 347 KRIVSGAYDGKIKV-----WDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSS 401
Query: 117 GKDKTLRTWNLVKGRSA 133
D T+ W+ + +A
Sbjct: 402 SHDDTILIWDFLNDPAA 418
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/225 (16%), Positives = 95/225 (42%), Gaps = 13/225 (5%)
Query: 33 DETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLF 92
D T+ ++D + L H G++ CL++ + +I+ S D ++ ++ V + ++ L
Sbjct: 152 DNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM--LN 207
Query: 93 KKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNLSSYGVGFENLDSVV 152
H AV H+ + + ++ KD+++ W++ S L VG +VV
Sbjct: 208 TLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMA---SPTDITLRRVLVGHRAAVNVV 262
Query: 153 WSPEGLLYAIPIQNKAVVFSVEKAGVLQTLKSESKVHSVCFLNETTVCTGNEESAITAYN 212
+ + + V++ ++TL + + + V +G+ ++ I ++
Sbjct: 263 DFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWD 322
Query: 213 LTDGSHLWQIKASASRIKGLVFFSIPQETTVCTGNEESAITAYNL 257
+ G+ L ++ ++ + F + +G + I ++L
Sbjct: 323 IECGACLRVLEGHEELVRCIRF----DNKRIVSGAYDGKIKVWDL 363
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/239 (20%), Positives = 100/239 (41%), Gaps = 34/239 (14%)
Query: 11 HSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI 70
+ HT++VR + K S D T+ ++D+ + LM H + C+++ +G ++
Sbjct: 196 YGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVV 253
Query: 71 SCSDDGSIAIFRVGSWQLE-KLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVK 129
S + D F V W E + +G S+ G +S D ++R W++
Sbjct: 254 SGAYD-----FMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVET 308
Query: 130 GRSAY-ITNLSSYGVGFENLDSVVWSPEGLLYAIPIQNKAVVFSVEKAGVLQTLKSESKV 188
G + +T S G E D+++ S + ++ ++ LQTL+ +K
Sbjct: 309 GNCIHTLTGHQSLTSGMELKDNILVSGNA-------DSTVKIWDIKTGQCLQTLQGPNKH 361
Query: 189 HSV--CF-LNETTVCTGNEESAITAYNLTDGSHL---------------WQIKASASRI 229
S C N+ V T +++ + ++L G + W+I+AS +++
Sbjct: 362 QSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKL 420
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 47/292 (16%), Positives = 105/292 (35%), Gaps = 44/292 (15%)
Query: 13 HTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISC 72
HT V S + S D T+ +++ + L H T+ C+ + ++S
Sbjct: 158 HTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK--RVVSG 215
Query: 73 SDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWN------ 126
S D ++ ++ + + Q + G + G+ +S D ++ W+
Sbjct: 216 SRDATLRVWDIETGQCLHVL----MGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETC 271
Query: 127 --LVKGRSAYITNLSSYGVGFENLDSVVWSPEGLLYAIPIQNKAVVFSVEKAGVLQTLKS 184
++G + + Y + F+ + V S + V+ VE + TL
Sbjct: 272 LHTLQGHTNRV-----YSLQFDGIHVVSGS---------LDTSIRVWDVETGNCIHTLTG 317
Query: 185 ESKVHSVCFLNETTVCTGNEESAITAYNLTDGSHLWQIKASASRIKGLVFFSIPQETTVC 244
+ S L + + +GN +S + +++ G L ++ + + V
Sbjct: 318 HQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF-NKNFVI 376
Query: 245 TGNEESAITAYNLTDGSHL---------------WHIKASASRIKGLASHRN 281
T +++ + ++L G + W I+AS +++ RN
Sbjct: 377 TSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRN 428
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 15/137 (10%)
Query: 2 YTLTQTFVTHSHTASVRSVAA---TSKLAASSGADETVVLY------DMVKRKQSGALMQ 52
+TL +H ++RSVA TS LAA S D TV ++ D A+++
Sbjct: 46 FTLIDVLDETAHKKAIRSVAWRPHTSLLAAGS-FDSTVSIWAKEESADRTFEMDLLAIIE 104
Query: 53 -HEGTITCLKFTPEGSHLISCSDDGSIAIFRV---GSWQLEKLFKKAHKGTAVNHISIHP 108
HE + + ++ +G +L +CS D S+ I+ G + E + V H+ HP
Sbjct: 105 GHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGE-EYECISVLQEHSQDVKHVIWHP 163
Query: 109 SGKLALSVGKDKTLRTW 125
S L S D T+R W
Sbjct: 164 SEALLASSSYDDTVRIW 180
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 11/137 (8%)
Query: 9 VTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSH 68
V H ASVR+V+ + S D T++++D+ + K L H I + E
Sbjct: 265 VLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKR 324
Query: 69 LISCSDDGSIAIFRVGSWQLE--KLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW- 125
IS S D +I I W LE +L TA+ + + S K +S D ++R W
Sbjct: 325 CISASXDTTIRI-----WDLENGELXYTLQGHTALVGL-LRLSDKFLVSAAADGSIRGWD 378
Query: 126 --NLVKGRSAYITNLSS 140
+ + S + TNLS+
Sbjct: 379 ANDYSRKFSYHHTNLSA 395
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 55/289 (19%), Positives = 117/289 (40%), Gaps = 29/289 (10%)
Query: 13 HTASVRSVAATSKLAASSGADETVV-LYDMVKRKQSGALMQHEGTITCLKFTPEGSHLIS 71
H SV + +GAD+ + +YD + +K L H+G + LK+ G L+S
Sbjct: 120 HXTSVITCLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYA-HGGILVS 178
Query: 72 CSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGR 131
S D ++ ++ + +F+ + I + + K ++ +D TL W L K
Sbjct: 179 GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES 238
Query: 132 SAYITNLSSYGVGFENLDSVVWSPEGLLYAIPIQNKAVVFSVEKAGVLQTLKSESKVHSV 191
S + +G E D L++ P +N V GVL+ + + S
Sbjct: 239 S-----VPDHG---EEHDY------PLVFHTPEENPYFV------GVLRGHXASVRTVSG 278
Query: 192 CFLNETTVCTGNEESAITAYNLTDGSHLWQIKASASRIKGLVFFSIPQETTVC-TGNEES 250
+ V +G+ ++ + +++ L+ + RI ++ E C + + ++
Sbjct: 279 ---HGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIY---DHERKRCISASXDT 332
Query: 251 AITAYNLTDGSHLWHIKASASRIKGLASHRNHLICITSAGDLVVWELNE 299
I ++L +G + ++ + + L L+ + G + W+ N+
Sbjct: 333 TIRIWDLENGELXYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAND 381
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 11/137 (8%)
Query: 9 VTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSH 68
V H ASVR+V+ + S D T++++D+ + K L H I + E
Sbjct: 265 VLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKR 324
Query: 69 LISCSDDGSIAIFRVGSWQLE--KLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW- 125
IS S D +I I W LE +L TA+ + + S K +S D ++R W
Sbjct: 325 CISASMDTTIRI-----WDLENGELMYTLQGHTALVGL-LRLSDKFLVSAAADGSIRGWD 378
Query: 126 --NLVKGRSAYITNLSS 140
+ + S + TNLS+
Sbjct: 379 ANDYSRKFSYHHTNLSA 395
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 55/289 (19%), Positives = 119/289 (41%), Gaps = 29/289 (10%)
Query: 13 HTASVRSVAATSKLAASSGADETVV-LYDMVKRKQSGALMQHEGTITCLKFTPEGSHLIS 71
H SV + +GAD+ ++ +YD + +K L H+G + LK+ G L+S
Sbjct: 120 HMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA-HGGILVS 178
Query: 72 CSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGR 131
S D ++ ++ + +F+ + I + + K ++ +D TL W L K
Sbjct: 179 GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES 238
Query: 132 SAYITNLSSYGVGFENLDSVVWSPEGLLYAIPIQNKAVVFSVEKAGVLQTLKSESKVHSV 191
S + +G E D L++ P +N V GVL+ + + S
Sbjct: 239 S-----VPDHG---EEHDY------PLVFHTPEENPYFV------GVLRGHMASVRTVSG 278
Query: 192 CFLNETTVCTGNEESAITAYNLTDGSHLWQIKASASRIKGLVFFSIPQETTVC-TGNEES 250
+ V +G+ ++ + +++ L+ + RI ++ E C + + ++
Sbjct: 279 ---HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIY---DHERKRCISASMDT 332
Query: 251 AITAYNLTDGSHLWHIKASASRIKGLASHRNHLICITSAGDLVVWELNE 299
I ++L +G ++ ++ + + L L+ + G + W+ N+
Sbjct: 333 TIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAND 381
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 13 HTASVRSVAATS---KLAASSGADETVVLYDM-VKRKQSGALMQHEGTITCLKFTPEGSH 68
HTA V S++ S + S D TV L+D+ + + HEG I +KF P+G
Sbjct: 204 HTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQR 263
Query: 69 LISCSDDGSIAIFRV 83
+ SDDG+ +F +
Sbjct: 264 FGTGSDDGTCRLFDM 278
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 50 LMQHEGTITCLKFTPEGSHLISCSDDGSIAIF 81
L H G + L +TPE + ++S S DG + ++
Sbjct: 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVW 93
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 31 GADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEK 90
G + +Y + ++ +G L+ H G I+ L+F L+S SDDG++ I+ G+ +
Sbjct: 224 GPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQN 283
Query: 91 LFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNL 127
F H + V+ + ++ S+ D ++R W+L
Sbjct: 284 CF-YGHSQSIVSASWVGDDKVISCSM--DGSVRLWSL 317
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 10/115 (8%)
Query: 17 VRSV--AATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSD 74
+RSV + K A+ D + ++D+ RK L HE I L + P G L+S S
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 75 DGSIAI--FRVGSWQLEKLFKKAHKGTAVNHISIHP-SGKLALSVGKDKTLRTWN 126
D ++ I R G L + V +++ P GK + D+ +R W+
Sbjct: 186 DRTVRIWDLRTGQCSLTLSIED-----GVTTVAVSPGDGKYIAAGSLDRAVRVWD 235
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 71/152 (46%), Gaps = 16/152 (10%)
Query: 12 SHTASVRSVAATSKLAASSGADETVVLYDM-VKRKQSGALMQHEGTITCLKFTPEGSHLI 70
SH+A V S++ S + +S + +D+ V L H + L++ P+G HL
Sbjct: 107 SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLA 166
Query: 71 SCSDDGSIAIFRV----GSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVG---KDKTLR 123
S +D + ++ G W + F + H+G AV ++ P L+ G D+ +R
Sbjct: 167 SGGNDNLVNVWPSAPGEGGWVPLQTFTQ-HQG-AVKAVAWCPWQSNVLATGGGTSDRHIR 224
Query: 124 TWNLVKGRSAYITNLSSYGVGFENLDSVVWSP 155
WN+ G A ++ + ++ + S++WSP
Sbjct: 225 IWNVCSG--ACLSAVDAH----SQVCSILWSP 250
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 12/133 (9%)
Query: 11 HSHTASV---RSVAATSKLAASSGADETVVLY--DMVKRKQSGALMQHEGTITCLKFTPE 65
+H ASV + V+ + ++ AD+T+ L+ D V + SG H + L +
Sbjct: 139 QAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGI---HNDVVRHLAVVDD 195
Query: 66 GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
G H ISCS+DG I + + + + + + H+ + V I + P+G + +S G+D+T+R W
Sbjct: 196 G-HFISCSNDGLIKLVDXHTGDVLRTY-EGHE-SFVYCIKLLPNGDI-VSCGEDRTVRIW 251
Query: 126 NLVKGRSAYITNL 138
+ G + L
Sbjct: 252 SKENGSLKQVITL 264
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 71/152 (46%), Gaps = 16/152 (10%)
Query: 12 SHTASVRSVAATSKLAASSGADETVVLYDM-VKRKQSGALMQHEGTITCLKFTPEGSHLI 70
SH+A V S++ S + +S + +D+ V L H + L++ P+G HL
Sbjct: 187 SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLA 246
Query: 71 SCSDDGSIAIFRV----GSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVG---KDKTLR 123
S +D + ++ G W + F + H+G AV ++ P L+ G D+ +R
Sbjct: 247 SGGNDNLVNVWPSAPGEGGWVPLQTFTQ-HQG-AVKAVAWCPWQSNVLATGGGTSDRHIR 304
Query: 124 TWNLVKGRSAYITNLSSYGVGFENLDSVVWSP 155
WN+ G A ++ + ++ + S++WSP
Sbjct: 305 IWNVCSG--ACLSAVDAH----SQVCSILWSP 330
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 71/152 (46%), Gaps = 16/152 (10%)
Query: 12 SHTASVRSVAATSKLAASSGADETVVLYDM-VKRKQSGALMQHEGTITCLKFTPEGSHLI 70
SH+A V S++ S + +S + +D+ V L H + L++ P+G HL
Sbjct: 198 SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLA 257
Query: 71 SCSDDGSIAIFRV----GSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVG---KDKTLR 123
S +D + ++ G W + F + H+G AV ++ P L+ G D+ +R
Sbjct: 258 SGGNDNLVNVWPSAPGEGGWVPLQTFTQ-HQG-AVKAVAWCPWQSNVLATGGGTSDRHIR 315
Query: 124 TWNLVKGRSAYITNLSSYGVGFENLDSVVWSP 155
WN+ G A ++ + ++ + S++WSP
Sbjct: 316 IWNVCSG--ACLSAVDAH----SQVCSILWSP 341
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 80/182 (43%), Gaps = 9/182 (4%)
Query: 19 SVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSI 78
++ T +AASS D + L+D+ KQ ++ L F+P+ +L + + G +
Sbjct: 87 DISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKV 146
Query: 79 AIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNL 138
IF V S + E + +G + I+ P GK S D + +++ G+ + L
Sbjct: 147 NIFGVESGKKE--YSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGK--LLHTL 202
Query: 139 SSYGVGFENLDSVVWSPEGLLYAIPIQNKAV-VFSVEKAGVLQTLKSE-SKVHSVCFLNE 196
+ + S+ +SP+ L + + ++ V+ A + TL S V +V F +
Sbjct: 203 EGHAMPIR---SLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 259
Query: 197 TT 198
T
Sbjct: 260 DT 261
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 54/116 (46%), Gaps = 4/116 (3%)
Query: 13 HTASVRSV--AATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI 70
H +RS+ + S+L ++ D + +YD+ +G L H + + F P+ +H +
Sbjct: 205 HAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFV 264
Query: 71 SCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWN 126
S S D S+ ++ VG+ F V + + +G +SVG D+ + ++
Sbjct: 265 SSSSDKSVKVWDVGTRTCVHTFFDHQD--QVWGVKYNGNGSKIVSVGDDQEIHIYD 318
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 53 HEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKL 112
H IT LKF P G LIS S D + I+ V + H+ T V I+I G+
Sbjct: 138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL-IGHRAT-VTDIAIIDRGRN 195
Query: 113 ALSVGKDKTLRTWNLVKGRSAYITN 137
LS D T+R W G + + N
Sbjct: 196 VLSASLDGTIRLWECGTGTTIHTFN 220
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 29 SSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQL 88
SS D + ++ + L+ H T+T + G +++S S DG+I ++ G+
Sbjct: 156 SSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTT 215
Query: 89 EKLF-KKAHKGTAVNHISIHPSGKLALSVGKDKTL 122
F +K + VN I AL VG D+ L
Sbjct: 216 IHTFNRKENPHDGVNSI--------ALFVGTDRQL 242
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 53 HEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKL 112
H IT LKF P G LIS S D + I+ V + H+ T V I+I G+
Sbjct: 135 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL-IGHRAT-VTDIAIIDRGRN 192
Query: 113 ALSVGKDKTLRTWNLVKGRSAYITN 137
LS D T+R W G + + N
Sbjct: 193 VLSASLDGTIRLWECGTGTTIHTFN 217
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 29 SSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQL 88
SS D + ++ + L+ H T+T + G +++S S DG+I ++ G+
Sbjct: 153 SSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTT 212
Query: 89 EKLF-KKAHKGTAVNHISIHPSGKLALSVGKDKTL 122
F +K + VN I AL VG D+ L
Sbjct: 213 IHTFNRKENPHDGVNSI--------ALFVGTDRQL 239
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 9/125 (7%)
Query: 13 HTASVRSVA---ATSKLAASSGADETVVLYDMVKR---KQSGALMQHEGTITCLKFTPEG 66
HTA V V+ L S D+ ++++D K S ++ H + CL F P
Sbjct: 226 HTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYS 285
Query: 67 SHLISC-SDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLAL-SVGKDKTLRT 124
+++ S D ++A++ + + +L+ ++HK + + P + L S G D+ L
Sbjct: 286 EFILATGSADKTVALWDLRNLKLKLHSFESHK-DEIFQVQWSPHNETILASSGTDRRLNV 344
Query: 125 WNLVK 129
W+L K
Sbjct: 345 WDLSK 349
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 98 GTAVNHISIHPSG-KLALSVGKDKTLRTWNL 127
G A+N + HP L LSV KD LR WN+
Sbjct: 114 GNAINELKFHPRDPNLLLSVSKDHALRLWNI 144
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 98 GTAVNHISIHPSG-KLALSVGKDKTLRTWNL 127
G A+N + HP L LSV KD LR WN+
Sbjct: 115 GNAINELKFHPRDPNLLLSVSKDHALRLWNI 145
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 98 GTAVNHISIHPSG-KLALSVGKDKTLRTWNL 127
G A+N + HP L LSV KD LR WN+
Sbjct: 114 GNAINELKFHPRDPNLLLSVSKDHALRLWNI 144
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 98 GTAVNHISIHPSG-KLALSVGKDKTLRTWNL 127
G A+N + HP L LSV KD LR WN+
Sbjct: 110 GNAINELKFHPRDPNLLLSVSKDHALRLWNI 140
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 18/135 (13%)
Query: 2 YTLTQTFVTHSHTASVRSVAATSKLAASSGA-DETVVLYDMVKRKQSGALM--QHEGTIT 58
+ L QTF H H + +SG D TV ++ + + + L Q G
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 59 CLKFT-PEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHIS------IHPSGK 111
+ P+ ++I+ SDD +I I W + K+ T H+S HP+
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKI-----WDYQT---KSCVATLEGHMSNVSFAVFHPTLP 241
Query: 112 LALSVGKDKTLRTWN 126
+ +S +D TL+ WN
Sbjct: 242 IIISGSEDGTLKIWN 256
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 2/126 (1%)
Query: 1 KYTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCL 60
K + +TF S T ++ V L++ + + ++ E +
Sbjct: 2 KLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAG 61
Query: 61 KFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDK 120
KF + +I SDD I +F + EK+ + I++HP+ LS D
Sbjct: 62 KFIARKNWIIVGSDDFRIRVFNYNT--GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDL 119
Query: 121 TLRTWN 126
T++ WN
Sbjct: 120 TVKLWN 125
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 29 SSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQL 88
++ D T+ ++D + L H ++ F P +IS S+DG++ I+ ++++
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262
Query: 89 EKLFKKAHKGTAVNHISIHPSGK 111
EK + + I+ HP+G+
Sbjct: 263 EKTLNVGLERSWC--IATHPTGR 283
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 18/135 (13%)
Query: 2 YTLTQTFVTHSHTASVRSVAATSKLAASSGA-DETVVLYDMVKRKQSGALM--QHEGTIT 58
+ L QTF H H + +SG D TV ++ + + + L Q G
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 59 CLKFT-PEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHIS------IHPSGK 111
+ P+ ++I+ SDD +I I W + K+ T H+S HP+
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKI-----WDYQT---KSCVATLEGHMSNVSFAVFHPTLP 241
Query: 112 LALSVGKDKTLRTWN 126
+ +S +D TL+ WN
Sbjct: 242 IIISGSEDGTLKIWN 256
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 2/126 (1%)
Query: 1 KYTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCL 60
K + +TF S T ++ V L++ + + ++ E +
Sbjct: 2 KLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAG 61
Query: 61 KFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDK 120
KF + +I SDD I +F + EK+ + I++HP+ LS D
Sbjct: 62 KFIARKNWIIVGSDDFRIRVFNYNT--GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDL 119
Query: 121 TLRTWN 126
T++ WN
Sbjct: 120 TVKLWN 125
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 29 SSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQL 88
++ D T+ ++D + L H ++ F P +IS S+DG++ I+ ++++
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262
Query: 89 EKLFKKAHKGTAVNHISIHPSGK 111
EK + + I+ HP+G+
Sbjct: 263 EKTLNVGLERSWC--IATHPTGR 283
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 98 GTAVNHISIHPSG-KLALSVGKDKTLRTWNL 127
G A+N + HP L LSV KD LR WN+
Sbjct: 151 GNAINELKFHPRDPNLLLSVSKDHALRLWNI 181
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 2 YTLTQTFVTHSHTASVRSVAATSKLAASSGA-DETVVLYDMVKRKQSGALMQ-HEGTITC 59
+ L QTF H H + +SG D TV ++ + + + L E +
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 60 LKFTP--EGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHIS------IHPSGK 111
+ + P + ++I+ SDD +I I W + K+ T H+S HP+
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKI-----WDYQT---KSCVATLEGHMSNVSFAVFHPTLP 241
Query: 112 LALSVGKDKTLRTWN 126
+ +S +D TL+ WN
Sbjct: 242 IIISGSEDGTLKIWN 256
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
Query: 36 VVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKA 95
V L++ + + ++ E + KF + +I SDD I +F + EK+
Sbjct: 37 VELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT--GEKVVDFE 94
Query: 96 HKGTAVNHISIHPSGKLALSVGKDKTLRTWN 126
+ I++HP+ LS D T++ WN
Sbjct: 95 AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 33 DETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLF 92
D T+ ++D + L H ++ F P +IS S+DG++ I+ ++++EK
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
Query: 93 KKAHKGTAVNHISIHPSGK 111
+ + I+ HP+G+
Sbjct: 267 NVGLERSWC--IATHPTGR 283
>pdb|4H5I|A Chain A, Crystal Structure Of The Guanine Nucleotide Exchange
Factor Sec12 (P1 Form)
pdb|4H5I|B Chain B, Crystal Structure Of The Guanine Nucleotide Exchange
Factor Sec12 (P1 Form)
pdb|4H5J|A Chain A, Crystal Structure Of The Guanine Nucleotide Exchange
Factor Sec12 (P64 Form)
pdb|4H5J|B Chain B, Crystal Structure Of The Guanine Nucleotide Exchange
Factor Sec12 (P64 Form)
Length = 365
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 57 ITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSV 116
IT +G + S+D SIA+ ++ K+FK+AH A+ ++I P SV
Sbjct: 272 ITSXDVDXKGELAVLASNDNSIALVKLKDLSXSKIFKQAH-SFAITEVTISPDSTYVASV 330
Query: 117 GKDKTLRTWNL 127
T+ L
Sbjct: 331 SAANTIHIIKL 341
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 22/137 (16%)
Query: 2 YTLTQTFVTHSHTASVRSVAATSK---LAASSGADETVVLYDMVKRKQSGALMQ-HEGTI 57
+ L QTF H H V VA K AS D TV ++ + + + L E +
Sbjct: 130 WALEQTFEGHEHF--VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGV 187
Query: 58 TCLKF--TPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHIS------IHPS 109
+ + P+ ++I+ SDD +I I W + K+ T H+S HP+
Sbjct: 188 NYVDYYPLPDKPYMITASDDLTIKI-----WDYQT---KSCVATLEGHMSNVSFAVFHPT 239
Query: 110 GKLALSVGKDKTLRTWN 126
+ +S +D TL+ WN
Sbjct: 240 LPIIISGSEDGTLKIWN 256
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 54 EGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLA 113
E + KF + +I SDD I +F + EK+ + I++HP+
Sbjct: 55 ETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT--GEKVVDFEAHPDYIRSIAVHPTKPYV 112
Query: 114 LSVGKDKTLRTWN 126
LS D T++ WN
Sbjct: 113 LSGSDDLTVKLWN 125
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 33 DETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLF 92
D T+ ++D + L H ++ F P +IS S+DG++ I+ ++++EK
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
Query: 93 KKAHKGTAVNHISIHPSGK 111
+ + I+ HP+G+
Sbjct: 267 NVGLERSWC--IATHPTGR 283
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 50 LMQHEGTITCLKFTPEGSHLISCSDDGSIAI-FRVGSWQLEKLFKKAHKGTAVNHISIHP 108
L HE +T +K+ EG L SCS D S ++ + + +L L H GT + I +
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTL--DGHTGT-IWSIDVDC 84
Query: 109 SGKLALSVGKDKTLRTWNLVKGR 131
K ++ D +++ W++ G+
Sbjct: 85 FTKYCVTGSADYSIKLWDVSNGQ 107
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 71/165 (43%), Gaps = 15/165 (9%)
Query: 9 VTHS--HTASVRSVAATSKLAASSGADETVVLYDMVKRKQS-GALMQHEGTITCLKFTPE 65
+TH A+V + K + D + YD+ + ++ HE +I+ ++F+P+
Sbjct: 170 ITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPD 229
Query: 66 GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVG----KDKT 121
++ I+ S D + + V + Q + KK +N I P + + G KD T
Sbjct: 230 LTYFITSSRDTNSFLVDVSTLQ---VLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVT 286
Query: 122 LRTWNLVKGRSAYITNLSSYGVG-----FENLDSVVWSPEGLLYA 161
+ N K + + + +G F L++V SP+G YA
Sbjct: 287 TTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYA 331
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 4 LTQTFVTHSHTASVR--SVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLK 61
L F + H V+ SV + A S G D +V ++D+ ++ + H + C+
Sbjct: 129 LVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVA 188
Query: 62 FTP-EGSHLISCSDDGSIAIF 81
P + + +SC +DG I ++
Sbjct: 189 ACPGKDTIFLSCGEDGRILLW 209
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 11/85 (12%)
Query: 49 ALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEK------LFKKAHKGTAVN 102
A +Q E +T + + E L++ SD G++ ++ + LEK F K V
Sbjct: 89 AGVQTEAGVTDVAWVSEKGILVA-SDSGAVELWEI----LEKESLLVNKFAKYEHDDIVK 143
Query: 103 HISIHPSGKLALSVGKDKTLRTWNL 127
+S+ G A+S GKD +++ W+L
Sbjct: 144 TLSVFSDGTQAVSGGKDFSVKVWDL 168
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 53 HEGTITCLKFTPEGSHLISCSDDGSIAIFRV----GSWQLEKLFKKAHKGTAVNHISIHP 108
H+ + + + G H+ +CS D I +F++ +W+L + +AH + V P
Sbjct: 8 HDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSW-RAHDSSIVAIDWASP 66
Query: 109 S-GKLALSVGKDKTLRTW 125
G++ S DKT++ W
Sbjct: 67 EYGRIIASASYDKTVKLW 84
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 72/163 (44%), Gaps = 8/163 (4%)
Query: 31 GADETVVLYDMVKRKQSGALMQH--EGT-ITCLKFTPE-GSHLISCSDDGSIAIFRVGSW 86
G D +VV Y K S + H +G+ + ++F+P+ G +I+ D I+ F S
Sbjct: 180 GDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG 239
Query: 87 QLEKLFKKAHKGT--AVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNLSSYGVG 144
+ K + + + +S S K A +VG D T+R W++ + L +G
Sbjct: 240 EFLKYIEDDQEPVQGGIFALSWLDSQKFA-TVGADATIRVWDVTTSKCVQKWTLDKQQLG 298
Query: 145 FENLDSVVWSPEGLLYAIPIQNKAVVFSVEKAGVLQTLKSESK 187
+ + VV + G + ++ + + + VL+T+ +K
Sbjct: 299 NQQV-GVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNK 340
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 53 HEGTITCLKFTPEGSHLISCSDDGSIAIFRV----GSWQLEKLFKKAHKGTAVNHISIHP 108
H+ + + + G H+ +CS D I +F++ +W+L + +AH + V P
Sbjct: 10 HDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSW-RAHDSSIVAIDWASP 68
Query: 109 S-GKLALSVGKDKTLRTW 125
G++ S DKT++ W
Sbjct: 69 EYGRIIASASYDKTVKLW 86
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 72/163 (44%), Gaps = 8/163 (4%)
Query: 31 GADETVVLYDMVKRKQSGALMQH--EGT-ITCLKFTPE-GSHLISCSDDGSIAIFRVGSW 86
G D +VV Y K S + H +G+ + ++F+P+ G +I+ D I+ F S
Sbjct: 180 GDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG 239
Query: 87 QLEKLFKKAHKGT--AVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNLSSYGVG 144
+ K + + + +S S K A +VG D T+R W++ + L +G
Sbjct: 240 EFLKYIEDDQEPVQGGIFALSWLDSQKFA-TVGADATIRVWDVTTSKCVQKWTLDKQQLG 298
Query: 145 FENLDSVVWSPEGLLYAIPIQNKAVVFSVEKAGVLQTLKSESK 187
+ + VV + G + ++ + + + VL+T+ +K
Sbjct: 299 NQQV-GVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNK 340
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 53 HEGTITCLKFTPEGSHLISCSDDGSIAIFRV----GSWQLEKLFKKAHKGTAVNHISIHP 108
H+ + + + G H+ +CS D I +F++ +W+L + +AH + V P
Sbjct: 10 HDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSW-RAHDSSIVAIDWASP 68
Query: 109 S-GKLALSVGKDKTLRTW 125
G++ S DKT++ W
Sbjct: 69 EYGRIIASASYDKTVKLW 86
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 14/126 (11%)
Query: 16 SVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDD 75
S R + AT + E L + + +++ + +I +KF+P+GS L D
Sbjct: 205 SERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS 264
Query: 76 ---GSIAIF------RVGSWQLEKLFKKAHKG-----TAVNHISIHPSGKLALSVGKDKT 121
G I ++ R+GS + +A G + V +S + SG+ S G D
Sbjct: 265 NSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGK 324
Query: 122 LRTWNL 127
LR W++
Sbjct: 325 LRFWDV 330
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 14/126 (11%)
Query: 16 SVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDD 75
S R + AT + E L + + +++ + +I +KF+P+GS L D
Sbjct: 195 SERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS 254
Query: 76 ---GSIAIF------RVGSWQLEKLFKKAHKG-----TAVNHISIHPSGKLALSVGKDKT 121
G I ++ R+GS + +A G + V +S + SG+ S G D
Sbjct: 255 NSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGK 314
Query: 122 LRTWNL 127
LR W++
Sbjct: 315 LRFWDV 320
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/62 (19%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 28 ASSGADETVVLYDMVKRKQSGALM---QHEGTITCLKFTPEGSHLISCSDDGSIAIFRVG 84
A++ D+TV ++D+ + + + + H + F+P+G+ L++ I ++
Sbjct: 267 ATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSAS 326
Query: 85 SW 86
W
Sbjct: 327 QW 328
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/62 (19%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 28 ASSGADETVVLYDMVKRKQSGALM---QHEGTITCLKFTPEGSHLISCSDDGSIAIFRVG 84
A++ D+TV ++D+ + + + + H + F+P+G+ L++ I ++
Sbjct: 267 ATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSAS 326
Query: 85 SW 86
W
Sbjct: 327 QW 328
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/62 (19%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 28 ASSGADETVVLYDMVKRKQSGALM---QHEGTITCLKFTPEGSHLISCSDDGSIAIFRVG 84
A++ D+TV ++D+ + + + + H + F+P+G+ L++ I ++
Sbjct: 268 ATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSAS 327
Query: 85 SW 86
W
Sbjct: 328 QW 329
>pdb|3FGB|A Chain A, Crystal Structure Of The Q89zh8_bactn Protein From
Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Consortium Target Btr289b.
pdb|3FGB|B Chain B, Crystal Structure Of The Q89zh8_bactn Protein From
Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Consortium Target Btr289b
Length = 361
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 18/139 (12%)
Query: 40 DMVKRKQSGA--LMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRV-----GSWQLEKLF 92
++VK K SGA Q + + C++ TP+G +L + D G+ I + E +F
Sbjct: 130 EVVKFKGSGADKERQEKPHLHCVRITPDGKYLFA-DDLGTDQIHKFIVNPNAKADNEDVF 188
Query: 93 --------KKAHKGTAVNHISIHPSGKLALSVGK-DKTLRTWNLVKGRSAYITNLSSYGV 143
K G+ H++ P+G A + + T+ + G I +++ V
Sbjct: 189 LKEGSPASYKVEAGSGPRHLTFAPNGSYAYLINELSGTVIAFEYNDGELKEIQTIAADTV 248
Query: 144 GFENLDSVVWSPEG-LLYA 161
G + + SP+G LYA
Sbjct: 249 GAKGSGDIHISPDGKFLYA 267
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex
Lacking The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex
Lacking The Arp2 Subunit
Length = 377
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/46 (21%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 45 KQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRV---GSWQ 87
K + H+ +TC+ + P+ + +++CS D + ++ G+W+
Sbjct: 46 KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWK 91
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 26 LAASSGADETVVLYDMVKRKQSGALMQ-HEGTITCLKFTPEG-SHLISCSDDGSI 78
+ A+ G D + ++D+ + +L++ HE + + F P HL +CS+DGS+
Sbjct: 251 VVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSL 305
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 57/130 (43%), Gaps = 8/130 (6%)
Query: 8 FVTHSHTASVRSVAA---TSKLAASSGA--DETVVLYDMVKRKQSGALMQHEGTITCLKF 62
F +H A+V++VA S L A+ G D+ + ++ + + +T L +
Sbjct: 253 FTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV-DAGSQVTSLIW 311
Query: 63 TPEGSHLISCS--DDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDK 120
+P ++S D +++I+ S L K T V + ++ P G++ + D+
Sbjct: 312 SPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDE 371
Query: 121 TLRTWNLVKG 130
L+ W + G
Sbjct: 372 NLKFWRVYDG 381
>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd
pdb|4AV9|A Chain A, Kluyveromyces Lactis Hsv2
pdb|4EXV|A Chain A, Structure Of Kluyveromyces Lactis Hsv2p
Length = 339
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 48 GALMQ-HEGTITCLKFTPEGSHLISCSDDGS-IAIFRVGSWQLEKLFKKAHKGTAVNHIS 105
G L++ H + ++ +G + +CS DG+ I +F+ + L + F++ T++ +
Sbjct: 172 GVLVKAHANPVKMVRLNRKGDMVATCSQDGTLIRVFQTDNGVLVREFRRGLDRTSIIDMR 231
Query: 106 IHPSGKLALSVGKDK 120
P G L+V DK
Sbjct: 232 WSPDGS-KLAVVSDK 245
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 47/124 (37%), Gaps = 12/124 (9%)
Query: 95 AHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT-----NLSSYGVGFENLD 149
AH G VN + G L+VG D +R WN G + + N S G+ F
Sbjct: 243 AHNG-KVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKF---- 297
Query: 150 SVVWSPEGLLYAIPIQNKAVVFSVEKAGVLQTLKSESKVHSVCFL--NETTVCTGNEESA 207
+V +P + V++V + LK K C N + +G+ +
Sbjct: 298 TVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCN 357
Query: 208 ITAY 211
I A+
Sbjct: 358 ILAW 361
>pdb|4HAC|A Chain A, Crystal Structure Of The Mevalonate Kinase From An
Archaeon Methanosarcina Mazei
Length = 321
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 62 FTPEGSHLISCSDDGSIAIF 81
P GSH++SCS G I +F
Sbjct: 14 LVPRGSHMVSCSAPGKIYLF 33
>pdb|2IPX|A Chain A, Human Fibrillarin
Length = 233
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 117 GKDKTLRTWNLVKGRSAYITNLSSYGVGFENLDSVVWSP 155
GK+ L T NLV G S Y S G + ++ W+P
Sbjct: 19 GKEDALVTKNLVPGESVYGEKRVSISEGDDKIEYRAWNP 57
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 28 ASSGADETVVLYDMVKRKQS--GALMQHEGTITCLKFTPE--GSHLISCSDDGSIAIFRV 83
A+ +D +V ++D+ Q L HEG + + + G+ L SCS D + I+R
Sbjct: 29 ATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWRE 88
Query: 84 GSWQLEKLFKKAHKGTAVNHISIHP 108
+ EK + A ++VN + P
Sbjct: 89 ENGTWEKSHEHAGHDSSVNSVCWAP 113
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.129 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,455,984
Number of Sequences: 62578
Number of extensions: 371454
Number of successful extensions: 1521
Number of sequences better than 100.0: 102
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 1093
Number of HSP's gapped (non-prelim): 239
length of query: 327
length of database: 14,973,337
effective HSP length: 99
effective length of query: 228
effective length of database: 8,778,115
effective search space: 2001410220
effective search space used: 2001410220
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)