RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7482
(327 letters)
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 75.5 bits (184), Expect = 4e-16
Identities = 28/137 (20%), Positives = 53/137 (38%), Gaps = 5/137 (3%)
Query: 25 KLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVG 84
+L S D + L+D+ + HE I + F P G+ + SDD + +F +
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256
Query: 85 SWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNLSSYGVG 144
+ Q + + + +S SG+L L+ D W+ +K A + V
Sbjct: 257 ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV- 315
Query: 145 FENLDSVVWSPEGLLYA 161
+ + +G+ A
Sbjct: 316 ----SCLGVTDDGMAVA 328
Score = 73.6 bits (179), Expect = 2e-15
Identities = 19/118 (16%), Positives = 40/118 (33%), Gaps = 6/118 (5%)
Query: 13 HTASVRSVA--ATSKLAASSGADETVVL--YDMVKRKQSGALMQHEGTITCLKFTPEGSH 68
H + + ++ A+ D T L + + + IT + F+ G
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 284
Query: 69 LISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWN 126
L++ DD + ++ + H V+ + + G + D L+ WN
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVLA-GHDN-RVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 57.8 bits (138), Expect = 5e-10
Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 11 HSHTASVRSVA--ATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSH 68
+ + SV+ + +L + D ++D +K ++G L H+ ++CL T +G
Sbjct: 267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMA 326
Query: 69 LISCSDDGSIAIF 81
+ + S D + I+
Sbjct: 327 VATGSWDSFLKIW 339
Score = 52.4 bits (124), Expect = 2e-08
Identities = 45/324 (13%), Positives = 91/324 (28%), Gaps = 50/324 (15%)
Query: 17 VRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDG 76
R A + L+ + + V M R+ L H I + + + L+S S DG
Sbjct: 21 ARKACADATLSQITNNIDPVGRIQMRTRRT---LRGHLAKIYAMHWGTDSRLLVSASQDG 77
Query: 77 SIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT 136
+ I+ + + + V + PSG G D +NL
Sbjct: 78 KLIIWDSYTTNKVHAIP--LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRV 135
Query: 137 NLSSYG-----------------------------------------VGFENLDSVVWSP 155
+ G + + +
Sbjct: 136 SRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 195
Query: 156 EGLLYAIPIQNKAVVFSVEKAGVLQTLKS-ESKVHSVCFL-NETTVCTGNEESAITAYNL 213
L + A ++ V + QT ES ++++CF N TG++++ ++L
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255
Query: 214 TDGSHLWQIKASASRIKGLVFFSIPQETTVCTGNEESAITAYNLTDGSHLWHIKASASRI 273
L + G ++ ++ + +R+
Sbjct: 256 RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV 315
Query: 274 KGLASHRNHLICITSAGD--LVVW 295
L + + T + D L +W
Sbjct: 316 SCLGVTDDGMAVATGSWDSFLKIW 339
Score = 27.4 bits (59), Expect = 2.6
Identities = 6/40 (15%), Positives = 13/40 (32%), Gaps = 2/40 (5%)
Query: 3 TLTQTFVTHSHTASVRSVAAT--SKLAASSGADETVVLYD 40
+ V H V + T A+ D + +++
Sbjct: 301 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 73.2 bits (178), Expect = 2e-15
Identities = 20/121 (16%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 5 TQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTP 64
+ + ++ + + + S D+T+ ++D+ L+ H+ + + F
Sbjct: 198 SYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS 257
Query: 65 EGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRT 124
G ++SC+DD ++ ++ + + K AH+ V + H + ++ D+T++
Sbjct: 258 GGKFILSCADDKTLRVWDYKNKRCMKTL-NAHEH-FVTSLDFHKTAPYVVTGSVDQTVKV 315
Query: 125 W 125
W
Sbjct: 316 W 316
Score = 60.9 bits (146), Expect = 3e-11
Identities = 52/318 (16%), Positives = 120/318 (37%), Gaps = 36/318 (11%)
Query: 6 QTFVTHSHTASVRSVA--ATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFT 63
+ + H + V V + S+ D T+ ++D L H ++ + F
Sbjct: 9 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD 68
Query: 64 PEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLR 123
G L SCS D +I ++ ++ + + +SI P+G +S +DKT++
Sbjct: 69 HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNV--SSVSIMPNGDHIVSASRDKTIK 126
Query: 124 TWNLVKGRSAYITNLSSYGVGFENLDSVVWSPEGLLYAIPIQNKAV-VFSVEKAGVLQTL 182
W + G + ++ E + V + +G L A ++ V V+ V L
Sbjct: 127 MWEVQTGY-----CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL 181
Query: 183 KSESKVH-SVCFLNETT---------------------VCTGNEESAITAYNLTDGSHLW 220
+ V + + E++ + +G+ + I ++++ G L
Sbjct: 182 REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM 241
Query: 221 QIKASASRIKGLVFFSIPQETTVCTGNEESAITAYNLTDGSHLWHIKASASRIKGLASHR 280
+ + ++G++F + + ++ + ++ + + + A + L H+
Sbjct: 242 TLVGHDNWVRGVLFH--SGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHK 299
Query: 281 NHLICITSAGD--LVVWE 296
+T + D + VWE
Sbjct: 300 TAPYVVTGSVDQTVKVWE 317
Score = 57.4 bits (137), Expect = 5e-10
Identities = 16/79 (20%), Positives = 33/79 (41%)
Query: 3 TLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKF 62
T V H + + K S D+T+ ++D ++ L HE +T L F
Sbjct: 238 MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDF 297
Query: 63 TPEGSHLISCSDDGSIAIF 81
++++ S D ++ ++
Sbjct: 298 HKTAPYVVTGSVDQTVKVW 316
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 63.7 bits (153), Expect = 5e-12
Identities = 22/134 (16%), Positives = 42/134 (31%), Gaps = 20/134 (14%)
Query: 13 HTASVRSVA--ATSKLAASSGADETVVLYDMVKRKQSGALM------------QHEGTIT 58
H SV SV + S D +V L+++ H+ +
Sbjct: 253 HKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVL 312
Query: 59 CLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGT-----AVNHISIHPSGKLA 113
+ T +++S S D + + S + + H+ + N S+ P +
Sbjct: 313 SVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ-GHRNSVISVAVANGSSLGPEYNVF 371
Query: 114 LSVGKDKTLRTWNL 127
+ D R W
Sbjct: 372 ATGSGDCKARIWKY 385
Score = 57.9 bits (138), Expect = 5e-10
Identities = 24/152 (15%), Positives = 49/152 (32%), Gaps = 18/152 (11%)
Query: 28 ASSGADETVVLYDMVKRKQSGALMQ-------HEGTITCLKFTPEGSHLISCSDDGSIAI 80
A+ D V ++D L H+ ++ + FT +G ++S S D S+ +
Sbjct: 221 AAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKL 280
Query: 81 FRV----------GSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG 130
+ + V ++ + + LS KD+ + W+ G
Sbjct: 281 WNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG 340
Query: 131 RSAYITNLSSYGV-GFENLDSVVWSPEGLLYA 161
+ V + PE ++A
Sbjct: 341 NPLLMLQGHRNSVISVAVANGSSLGPEYNVFA 372
Score = 50.2 bits (118), Expect = 1e-07
Identities = 20/95 (21%), Positives = 31/95 (32%), Gaps = 13/95 (13%)
Query: 5 TQTFVTHSHTASVRSVAAT--SKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCL-- 60
T H V SVA T + S D V+ +D L H ++ +
Sbjct: 299 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAV 358
Query: 61 ----KFTPEGSHLISCSDDGSIAIFRVGSWQLEKL 91
PE + + S D I W+ +K+
Sbjct: 359 ANGSSLGPEYNVFATGSGDCKARI-----WKYKKI 388
Score = 42.1 bits (97), Expect = 5e-05
Identities = 34/312 (10%), Positives = 100/312 (32%), Gaps = 44/312 (14%)
Query: 27 AASSGADETVVLYDMVKRKQSGA----LMQHEGTITCLKFTPEGSHLISCSDDGSIAIFR 82
A ++ +LY+ ++ + H + C+KF+ +G +L + + + ++R
Sbjct: 31 ALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNK-TTQVYR 89
Query: 83 VGSWQLEKLFKKAHKGT----------------AVNHISIHPSGKLALSVGKDKTLRTWN 126
V L + + P GK + +D+ +R W+
Sbjct: 90 VSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWD 149
Query: 127 LVKGRSAYITNLSSYGVGFENLDSVVWSPEGLLYAIPIQNKAVVFSVEKAGVLQTLKSES 186
+ + I + + ++ + +++
Sbjct: 150 IENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLT--LSIEDGV 207
Query: 187 KVHSVCFLNETTVCTGNEESAITAYNLTDGSHLWQIKASASRIKGL------VFFSIPQE 240
+V + + G+ + A+ ++ G + ++ + G V F+
Sbjct: 208 TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT-RDG 266
Query: 241 TTVCTGNEESAITAYNLTDGS------------HLWHIKASASRIKGLASHRNHLICITS 288
+V +G+ + ++ +NL + + + +A+ +N ++
Sbjct: 267 QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSG 326
Query: 289 AGD--LVVWELN 298
+ D ++ W+
Sbjct: 327 SKDRGVLFWDKK 338
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 62.5 bits (150), Expect = 1e-11
Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 3/78 (3%)
Query: 51 MQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSG 110
HE + LKF G +S D + +R +F+ +V I
Sbjct: 262 HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS--IFQSKESS-SVLSCDISVDD 318
Query: 111 KLALSVGKDKTLRTWNLV 128
K ++ DK + ++
Sbjct: 319 KYIVTGSGDKKATVYEVI 336
Score = 51.0 bits (120), Expect = 6e-08
Identities = 10/73 (13%), Positives = 24/73 (32%), Gaps = 1/73 (1%)
Query: 11 HSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI 70
H A K S+G D + + S + ++ + + +++
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWR-TPYGASIFQSKESSSVLSCDISVDDKYIV 322
Query: 71 SCSDDGSIAIFRV 83
+ S D ++ V
Sbjct: 323 TGSGDKKATVYEV 335
Score = 46.3 bits (108), Expect = 2e-06
Identities = 44/297 (14%), Positives = 96/297 (32%), Gaps = 17/297 (5%)
Query: 10 THSHTASVRSVA--ATSKLAASSGADETVVLYDMVKRKQSGALMQ-----HEGTITCLKF 62
T +H V +V ++ + G V ++D+ + Q + I K
Sbjct: 47 TLNHGEVVCAVTISNPTRHVYT-GGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKL 105
Query: 63 TPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTL 122
P+G LI + +++I+ + + + A ++I P K V
Sbjct: 106 LPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK----VCFSCCS 161
Query: 123 RTWNLVKGRSAYITNLSSYGVGFENLDSVVWSPEGLLYAIPIQNKAVVFSVEKAGVLQTL 182
V G + + L+ + N + + + LQ
Sbjct: 162 DGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH 221
Query: 183 KSESKVHSVCFLNETTVCTGNEESAITAYNLTDGSHLWQIKASASRIKGLVFFSIPQETT 242
S++ S+ + ES+ + +Q+ S + L F
Sbjct: 222 DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKF--AYCGKW 279
Query: 243 VCTGNEESAITAYNLTDGSHLWHIKASASRIKGLASHRNHLICITSAGD--LVVWEL 297
+ +++ + A+ G+ ++ K S S + + +T +GD V+E+
Sbjct: 280 FVSTGKDNLLNAWRTPYGASIFQSKES-SSVLSCDISVDDKYIVTGSGDKKATVYEV 335
Score = 45.2 bits (105), Expect = 6e-06
Identities = 12/111 (10%), Positives = 37/111 (33%), Gaps = 6/111 (5%)
Query: 20 VAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIA 79
V A ++ + ++ + + + + H + + + H+ + G +
Sbjct: 17 VTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVK 75
Query: 80 IFRVGSWQ----LEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWN 126
++ + + +L + + P G + G+ TL W+
Sbjct: 76 VWDISHPGNKSPVSQLDCLNRDN-YIRSCKLLPDGCTLIVGGEASTLSIWD 125
Score = 34.4 bits (77), Expect = 0.015
Identities = 10/79 (12%), Positives = 26/79 (32%), Gaps = 1/79 (1%)
Query: 79 AIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNL 138
A+ G + + + G V ++I + + G ++ W++ + +
Sbjct: 32 ALIGPGIPRHARQINTLNHGEVVCAVTISNPTRH-VYTGGKGCVKVWDISHPGNKSPVSQ 90
Query: 139 SSYGVGFENLDSVVWSPEG 157
+ S P+G
Sbjct: 91 LDCLNRDNYIRSCKLLPDG 109
Score = 29.4 bits (64), Expect = 0.57
Identities = 6/39 (15%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 6 QTFVTHSHTASVRSVA--ATSKLAASSGADETVVLYDMV 42
+ ++SV S K + D+ +Y+++
Sbjct: 298 ASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 59.9 bits (143), Expect = 1e-10
Identities = 12/71 (16%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 57 ITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFK-KAHKGTAVNHISIHPSGKLALS 115
I+C + + + + C ++ + I+ + ++ + K H G V + P ++
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNG-QVTGVDWAPDSNRIVT 68
Query: 116 VGKDKTLRTWN 126
G D+ W
Sbjct: 69 CGTDRNAYVWT 79
Score = 54.9 bits (130), Expect = 5e-09
Identities = 27/189 (14%), Positives = 56/189 (29%), Gaps = 5/189 (2%)
Query: 10 THS-HTASVRSVA--ATSKLAASSGADETVVLYDMV--KRKQSGALMQHEGTITCLKFTP 64
HS + A A + V +Y+ K Q L +H G +T + + P
Sbjct: 2 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP 61
Query: 65 EGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRT 124
+ + +++C D + ++ + + A + P+ K + +
Sbjct: 62 DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISI 121
Query: 125 WNLVKGRSAYITNLSSYGVGFENLDSVVWSPEGLLYAIPIQNKAVVFSVEKAGVLQTLKS 184
+ ++ + L LL A K +FS V +
Sbjct: 122 CYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAP 181
Query: 185 ESKVHSVCF 193
+ F
Sbjct: 182 TPWGSKMPF 190
Score = 38.3 bits (87), Expect = 0.001
Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 7/91 (7%)
Query: 7 TFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEG 66
+F S + D+ +G H+ +++ + G
Sbjct: 279 SFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAA-AGAGLDSLHKNSVSQISVLSGG 337
Query: 67 ----SHLISCSDDGSIAIFRVGSWQLEKLFK 93
S + DG ++I+ V S LE K
Sbjct: 338 KAKCSQFCTTGMDGGMSIWDVRS--LESALK 366
Score = 30.2 bits (66), Expect = 0.37
Identities = 43/320 (13%), Positives = 91/320 (28%), Gaps = 24/320 (7%)
Query: 3 TLTQTFVTHSHTASVRSVA--ATSKLAASSGADETVVLYDMVKR--KQSGALMQHEGTIT 58
Q H V V S + G D ++ + R K + +++
Sbjct: 40 KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAAR 99
Query: 59 CLKFTPEGSHLISCSDDGSIAIFRVGSWQ--LEKLFKKAHKGTAVNHISIHPSGKLALSV 116
C+++ P S I+I K + V + HP+ L +
Sbjct: 100 CVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG 159
Query: 117 GKDKTLRTWNLVKGRSAYITNLSSYGVGFEN------LDSVVWSPEGLLYAIPIQNKAVV 170
D R ++ + +G S G+ ++ A V
Sbjct: 160 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWV 219
Query: 171 FSVEKAGVLQTLKSESKVHSVCFLNETTVCTGNEESAITAYNLTDGSHLWQIKASASRIK 230
+ K + T ES++ A L+ ++A ++
Sbjct: 220 SHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLS 279
Query: 231 GLVFFSIPQETTVCTGNEESAITAYNLT--------DGSHLWHI-KASASRIKGLASHRN 281
+P++++ + G+ L + K S S+I L+ +
Sbjct: 280 FGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKA 339
Query: 282 HLICITSAGD---LVVWELN 298
+ G + +W++
Sbjct: 340 KCSQFCTTGMDGGMSIWDVR 359
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 57.2 bits (136), Expect = 6e-10
Identities = 27/121 (22%), Positives = 52/121 (42%), Gaps = 2/121 (1%)
Query: 13 HTASVRS-VAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLIS 71
H SV + + + D+ + +YD + +K L H+G + LK+ G L+S
Sbjct: 11 HMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH-GGILVS 69
Query: 72 CSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGR 131
S D ++ ++ + +F+ + I + + K ++ +D TL W L K
Sbjct: 70 GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES 129
Query: 132 S 132
S
Sbjct: 130 S 130
Score = 41.4 bits (95), Expect = 8e-05
Identities = 9/77 (11%), Positives = 24/77 (31%), Gaps = 2/77 (2%)
Query: 51 MQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSG 110
H ++ + +++ + I+ + S +L + ++
Sbjct: 278 SYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDAD-QIWSVNFKGKT 336
Query: 111 KLALSVGKDKTLRTWNL 127
+A +V KD L
Sbjct: 337 LVA-AVEKDGQSFLEIL 352
Score = 36.8 bits (83), Expect = 0.002
Identities = 10/71 (14%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 11 HSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGA-LMQHEGTITCLKFTPEGSHL 69
H++ +++ + + + S G++ +Y++ K A +++ I + F + +
Sbjct: 281 HTNLSAITTFYVSDNILVS-GSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LV 338
Query: 70 ISCSDDGSIAI 80
+ DG +
Sbjct: 339 AAVEKDGQSFL 349
Score = 32.2 bits (71), Expect = 0.079
Identities = 14/121 (11%), Positives = 31/121 (25%), Gaps = 4/121 (3%)
Query: 41 MVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTA 100
++ + G + K ++ T
Sbjct: 224 TIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTN 283
Query: 101 VNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNLSSYGVGFENLDSVVWSPEGLLY 160
++ I+ L G + +NL G+ + L + SV + + L+
Sbjct: 284 LSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIW----SVNFKGKTLVA 339
Query: 161 A 161
A
Sbjct: 340 A 340
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 54.1 bits (128), Expect = 7e-09
Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Query: 39 YDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKG 98
V S + H G++ L ++P+G+ + S S D +I I+ V + ++EK
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI-PVGTR 281
Query: 99 TAVNHISIHPSGKLALSVGKDKTLRTWNL 127
+ I + + +S+ + + N
Sbjct: 282 IEDQQLGIIWTKQALVSISANGFINFVNP 310
Score = 47.6 bits (111), Expect = 9e-07
Identities = 28/277 (10%), Positives = 69/277 (24%), Gaps = 9/277 (3%)
Query: 30 SGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSI-AIFRVGSWQL 88
+V + + +H T K +P G + S G++ + +
Sbjct: 34 YCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI 93
Query: 89 EKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNLSSYGVGFENL 148
K G + S ++A + L ++
Sbjct: 94 LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVD 153
Query: 149 DSVVWSPEGLLYAIPIQNKAVVFSVEKAGVLQTLKSESKVHSVCFLNETTVCTGNEESAI 208
+ + K ++ + + + + I
Sbjct: 154 FKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTI 213
Query: 209 TAYNLTDGSHLWQIKASASRIKGLVFF-----SIPQETTVCTGNEESAITAYNLTDGSHL 263
YN DG+ + + + P T + + + + I +N+
Sbjct: 214 VLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVE 273
Query: 264 WHIKAS---ASRIKGLASHRNHLICITSAGDLVVWEL 297
I + G+ + L+ I++ G +
Sbjct: 274 KTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310
Score = 44.5 bits (103), Expect = 8e-06
Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 3/72 (4%)
Query: 55 GTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLAL 114
GT L TP G + C+ S+ VGS +++ H PSG
Sbjct: 18 GTAVVLGNTPAGDKIQYCNGT-SVYTVPVGSLTDTEIYT-EHSH-QTTVAKTSPSGYYCA 74
Query: 115 SVGKDKTLRTWN 126
S +R W+
Sbjct: 75 SGDVHGNVRIWD 86
Score = 40.7 bits (93), Expect = 1e-04
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 24 SKLAASSGADETVVLYDMVKRKQSGALMQHEG-TITCLKFTPEGSHLISCSDDGSIAIF 81
AS+ AD+T+ ++++ K + L L+S S +G I
Sbjct: 250 GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308
Score = 25.6 bits (54), Expect = 9.6
Identities = 4/40 (10%), Positives = 12/40 (30%), Gaps = 1/40 (2%)
Query: 3 TLTQTFVTHS-HTASVRSVAATSKLAASSGADETVVLYDM 41
+ +T + + T + S A+ + +
Sbjct: 271 KVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 54.0 bits (128), Expect = 7e-09
Identities = 24/152 (15%), Positives = 56/152 (36%), Gaps = 3/152 (1%)
Query: 11 HSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI 70
HT V S+ S D ++ ++D+ L H+ + ++ + L+
Sbjct: 174 QGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILV 231
Query: 71 SCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG 130
S + D ++ I+ + + Q + + +K + + ++ D T++ W+L G
Sbjct: 232 SGNADSTVKIWDIKTGQCLQTLQGPNKHQ-SAVTCLQFNKNFVITSSDDGTVKLWDLKTG 290
Query: 131 RSAYITNLSSYGVGFENLDSVVWSPEGLLYAI 162
G + + S L+ A+
Sbjct: 291 EFIRNLVTLESGGSGGVVWRIRASNTKLVCAV 322
Score = 52.5 bits (124), Expect = 2e-08
Identities = 50/327 (15%), Positives = 110/327 (33%), Gaps = 21/327 (6%)
Query: 3 TLTQTFVTHSHTASVRSVAATS-KLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLK 61
L V H V + S D T+ ++ V K L+ H G + +
Sbjct: 5 ELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQ 64
Query: 62 FTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKT 121
S + G + V + +H ++ S +D T
Sbjct: 65 MRDNIIISGSTDRTLKVWNAETGECI----HTLYGHTSTVRCMHLHEKRVVSGS--RDAT 118
Query: 122 LRTWNLVKGRSAYITNLSSYGVGFENLDSVVWSPEGLLYAIPIQNKAVVFSVEKAGVLQT 181
LR W++ G+ ++ V V + + V+ E L T
Sbjct: 119 LRVWDIETGQCLHVLMGHVAAV------RCVQYDGRRVVSGAYDFMVKVWDPETETCLHT 172
Query: 182 LKSESKVHSVCFLNETTVCTGNEESAITAYNLTDGSHLWQIKASASRIKGLVFFSIPQET 241
L+ + + V +G+ +++I +++ G+ + + S G+ ++
Sbjct: 173 LQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL----KDN 228
Query: 242 TVCTGNEESAITAYNLTDGSHLWHIKASA---SRIKGLASHRNHLICITSAGDLVVWELN 298
+ +GN +S + +++ G L ++ S + L ++N +I + G + +W+L
Sbjct: 229 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK 288
Query: 299 E-DVTREPQRVSATNDGCRFTCLAIRP 324
+ R + + G +
Sbjct: 289 TGEFIRNLVTLESGGSGGVVWRIRASN 315
Score = 48.3 bits (113), Expect = 5e-07
Identities = 17/127 (13%), Positives = 42/127 (33%), Gaps = 8/127 (6%)
Query: 9 VTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQ-SGALMQHEGTITCLKFTPEGS 67
H + + + S AD TV ++D+ + ++ +
Sbjct: 212 TLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN 271
Query: 68 HLISCSDDGSIAIFRVGSWQLEKLFKKAHKGT---AVNHISIHPSGKLALSVGKDKT--- 121
+I+ SDDG++ ++ + + + + G V I + + ++ T
Sbjct: 272 FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEET 331
Query: 122 -LRTWNL 127
L +
Sbjct: 332 KLLVLDF 338
Score = 39.4 bits (90), Expect = 3e-04
Identities = 12/85 (14%), Positives = 28/85 (32%), Gaps = 5/85 (5%)
Query: 2 YTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDM-----VKRKQSGALMQHEGT 56
L + H ++V + +S D TV L+D+ ++ + G
Sbjct: 248 QCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGV 307
Query: 57 ITCLKFTPEGSHLISCSDDGSIAIF 81
+ ++ + S +G+
Sbjct: 308 VWRIRASNTKLVCAVGSRNGTEETK 332
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 51.1 bits (120), Expect = 5e-08
Identities = 27/246 (10%), Positives = 61/246 (24%), Gaps = 2/246 (0%)
Query: 53 HEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKL 112
H IT L + +G L S +G I + + + ++F H + I G L
Sbjct: 11 HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHAT-MITGIKTTSKGDL 69
Query: 113 ALSVGKDKTLRTWNLVKGRSAYITNLSSYGVGFENLDSVVWSPEGLLYAIPIQNKAVVFS 172
+V D L+ +++ +V + + A
Sbjct: 70 F-TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG 128
Query: 173 VEKAGVLQTLKSESKVHSVCFLNETTVCTGNEESAITAYNLTDGSHLWQIKASASRIKGL 232
+ S + + + A + +
Sbjct: 129 KLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFS 188
Query: 233 VFFSIPQETTVCTGNEESAITAYNLTDGSHLWHIKASASRIKGLASHRNHLICITSAGDL 292
+ T ++ ++ W + + L + +
Sbjct: 189 NNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSV 248
Query: 293 VVWELN 298
+VW +N
Sbjct: 249 IVWNMN 254
Score = 45.0 bits (104), Expect = 6e-06
Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 51 MQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEK-LFKKAHKGTAVNHISIHPS 109
H + C+ ++P+ L + S D S+ ++ + + K AH ++VN +
Sbjct: 221 TFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE 280
Query: 110 GKLALSVGKDKTLRTWNL 127
+ S G+D ++ WN+
Sbjct: 281 TTIV-SAGQDSNIKFWNV 297
Score = 41.1 bits (94), Expect = 9e-05
Identities = 37/302 (12%), Positives = 86/302 (28%), Gaps = 14/302 (4%)
Query: 3 TLTQTFVTHSHTASVRSVA--ATSKLAASSGADETVVLYDMVKRKQSGALMQ-HEGTITC 59
++ Q + H ++ +++ A K S+ A+ + +D+ + H IT
Sbjct: 3 SIDQVR--YGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITG 60
Query: 60 LKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKD 119
+K T + L + S D + + G ++ A+K ++ +
Sbjct: 61 IKTTSK-GDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACY 119
Query: 120 KTLRTWNLVKGRSAYITNLSSYGVGFENLDSVVWSPEGLLYAIPIQNKAVVFSVEKAGVL 179
K + ++ SY L + + + +
Sbjct: 120 KHIAIYS----HGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT 175
Query: 180 QTLKSESKVHSVCFLNETTVCTGNEESAITAYNLTDGSHLWQIKASASRIKGLVFFSIPQ 239
+E + V T I + + K P
Sbjct: 176 IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPD 235
Query: 240 ETTVCTGNEESAITAYNLTDGSHLWHIKASA---SRIKGLASHRNHLICITSA-GDLVVW 295
+ TG+ ++++ +N+ S I A S + + I ++ W
Sbjct: 236 NVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295
Query: 296 EL 297
+
Sbjct: 296 NV 297
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 49.8 bits (117), Expect = 1e-07
Identities = 15/92 (16%), Positives = 34/92 (36%), Gaps = 3/92 (3%)
Query: 38 LYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHK 97
+ + + + ++F+P L + DG I+ + + + + K F K ++
Sbjct: 235 RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE 294
Query: 98 GTAVNHISIHPSGKLALSVGKDKTLRTWNLVK 129
+ V I S + D T +T +
Sbjct: 295 DSVV---KIACSDNILCLATSDDTFKTNAAID 323
Score = 49.5 bits (116), Expect = 2e-07
Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 53 HEGTITCLKFTPEGSHLISCSDDGSIAIFRV--GSWQLEKLFKKAHKGTAVNHISIHPSG 110
+ I+ +K P S L+ S DGS+ +++ + ++ L +K + + +
Sbjct: 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKH-PLLCCNFIDNT 68
Query: 111 KLALSVG 117
L + VG
Sbjct: 69 DLQIYVG 75
Score = 44.1 bits (102), Expect = 1e-05
Identities = 8/72 (11%), Positives = 24/72 (33%), Gaps = 5/72 (6%)
Query: 9 VTHSHTASVRSVA--ATSKLAASSGADETVVLYDMVKRKQSGALMQ---HEGTITCLKFT 63
+ + + + + L + D ++ +Y + ++ L+Q ++ + C F
Sbjct: 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFI 65
Query: 64 PEGSHLISCSDD 75
I
Sbjct: 66 DNTDLQIYVGTV 77
Score = 35.2 bits (79), Expect = 0.008
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 94 KAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGR 131
+A K ++ I I PS L L D +L +
Sbjct: 8 QAPKDY-ISDIKIIPSKSLLLITSWDGSLTVYKFDIQA 44
Score = 31.0 bits (68), Expect = 0.18
Identities = 18/125 (14%), Positives = 29/125 (23%), Gaps = 19/125 (15%)
Query: 51 MQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAV--------- 101
E S DG +A+ + K
Sbjct: 191 GLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNL 250
Query: 102 ----NHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNLSSYGVGFENLDSVVWSPEG 157
N I P K + G D + WNL + I N + + V +
Sbjct: 251 AYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK--IKNFAKFNEDS----VVKIACSD 304
Query: 158 LLYAI 162
+ +
Sbjct: 305 NILCL 309
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 49.5 bits (116), Expect = 2e-07
Identities = 34/301 (11%), Positives = 94/301 (31%), Gaps = 14/301 (4%)
Query: 1 KYTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCL 60
+++L + + V + + S D T+ ++D + L H G++ CL
Sbjct: 2 RHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCL 61
Query: 61 KFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDK 120
++ S + G + + + + S+
Sbjct: 62 QYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWD 121
Query: 121 TLRTWNLVKGRSAYITNLSSYGVGFENLDSVVWSPEGLLYAIPIQNKAVVFSVEKAGVLQ 180
++ R + V F++ V S + + V++ ++
Sbjct: 122 MASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIK---------VWNTSTCEFVR 172
Query: 181 TLKSESKVHSVCFLNETTVCTGNEESAITAYNLTDGSHLWQIKA-----SASRIKGLVFF 235
TL + + + V +G+ ++ I +++ G+ L ++ R
Sbjct: 173 TLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIV 232
Query: 236 SIPQETTVCTGNEESAITAYNLTDGSHLWHIKASASRIKGLASHRNHLICITSAGDLVVW 295
S + + + +A+ L + + R+ L ++ + +++W
Sbjct: 233 SGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIW 292
Query: 296 E 296
+
Sbjct: 293 D 293
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 48.4 bits (113), Expect = 4e-07
Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 2/78 (2%)
Query: 51 MQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSG 110
+ E + + S D +I I+ V AHK VN++
Sbjct: 212 SWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD-GVNNLLWETPS 270
Query: 111 KLALSVGKDKTLRTWNLV 128
L S G D ++ WN+V
Sbjct: 271 TLV-SSGADACIKRWNVV 287
Score = 36.1 bits (81), Expect = 0.004
Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 11/61 (18%)
Query: 53 HEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKL 112
H IT L P LIS S DG I W + + H + + + +
Sbjct: 12 HNKGITALTVNP----LISGSYDGRIME-----WSSSSMH-QDHSN-LIVSLDNSKAQEY 60
Query: 113 A 113
+
Sbjct: 61 S 61
Score = 34.2 bits (76), Expect = 0.017
Identities = 35/280 (12%), Positives = 67/280 (23%), Gaps = 23/280 (8%)
Query: 13 HTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISC 72
H + ++ + L S D ++ + Q H I L
Sbjct: 12 HNKGITALT-VNPLI-SGSYDGRIMEWSSSSMHQD-----HSNLIVSLDN---------- 54
Query: 73 SDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRS 132
S + K G+ S + G A+ + D L G
Sbjct: 55 SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAV-LTNDDDLLILQSFTGDI 113
Query: 133 AYITNLSSYGVGFENLDSVVWSPEGLLYAIPIQNKAVVFSVEKAGVLQTLKSESKVHSVC 192
L+S G + V + S + +K +
Sbjct: 114 IKSVRLNSPGSAVSLSQNYVAVG----LEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYIS 169
Query: 193 FLNETTVCTGNEESAITAYNLTDGSHLWQIKASASRIKGLVFFSIPQETTVCTGNEESAI 252
T + + + + K P E E +
Sbjct: 170 ISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDL 229
Query: 253 TAYNLTDGS-HLWHIKASASRIKGLASHRNHLICITSAGD 291
A D + ++ +K IK L +H++ + +
Sbjct: 230 VATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP 269
Score = 26.1 bits (55), Expect = 6.2
Identities = 6/47 (12%), Positives = 16/47 (34%), Gaps = 5/47 (10%)
Query: 94 KAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNLSS 140
H + ++++P +S D + W+ + + S
Sbjct: 10 SGHNK-GITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVS 51
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 48.3 bits (113), Expect = 6e-07
Identities = 15/90 (16%), Positives = 34/90 (37%), Gaps = 4/90 (4%)
Query: 1 KYTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCL 60
Y + + SV + + ++ YD+ RK + + + +T L
Sbjct: 265 DYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK----VTEVKNNLTDL 320
Query: 61 KFTPEGSHLISCSDDGSIAIFRVGSWQLEK 90
+ + + ++ DDG I F + + E+
Sbjct: 321 RLSADRKTVMVRKDDGKIYTFPLEKPEDER 350
Score = 46.8 bits (109), Expect = 2e-06
Identities = 10/120 (8%), Positives = 31/120 (25%), Gaps = 6/120 (5%)
Query: 11 HSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI 70
+ A + + D + L + ++
Sbjct: 233 TKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQ 292
Query: 71 SCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG 130
+ G + + V + ++ ++ + + + K + D + T+ L K
Sbjct: 293 GAPEKGVLLKYDVKTRKVTEVKN------NLTDLRLSADRKTVMVRKDDGKIYTFPLEKP 346
Score = 27.1 bits (58), Expect = 3.3
Identities = 1/29 (3%), Positives = 5/29 (17%)
Query: 53 HEGTITCLKFTPEGSHLISCSDDGSIAIF 81
I ++ + +
Sbjct: 41 EPLRIRYVRRGGDTKVAFIHGTREGDFLG 69
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 47.9 bits (112), Expect = 7e-07
Identities = 19/138 (13%), Positives = 39/138 (28%), Gaps = 13/138 (9%)
Query: 1 KYTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQ------HE 54
K + +H A + SV+A + S D + ++D + H+
Sbjct: 1 KVFIATANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHK 60
Query: 55 GTITCLKF-------TPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIH 107
+ + E + + S G + +R+ K + + H
Sbjct: 61 SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKH 120
Query: 108 PSGKLALSVGKDKTLRTW 125
L D+ L
Sbjct: 121 SFWALKWGASNDRLLSHR 138
Score = 36.0 bits (81), Expect = 0.006
Identities = 30/169 (17%), Positives = 56/169 (33%), Gaps = 22/169 (13%)
Query: 10 THSHTASVRSVAATSK-LAASSGADETVVLYDMVKRKQSGALMQHE------GTITCLKF 62
+ + SV + + L A+ + TV + ++ + +I +KF
Sbjct: 180 PMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF 239
Query: 63 TPEGSHLISCSDDGSIAIFR--------------VGSWQLEKLFKKAHKGTAVNHISIHP 108
+P+GS L D S V + + + + V +S +
Sbjct: 240 SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND 299
Query: 109 SGKLALSVGKDKTLRTWNLVKGRSAYITNLSSYGVGFENLDSVVWSPEG 157
SG+ S G D LR W++ N+ + E D + G
Sbjct: 300 SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEE-DILAVDEHG 347
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 43.4 bits (100), Expect = 2e-05
Identities = 15/119 (12%), Positives = 34/119 (28%), Gaps = 7/119 (5%)
Query: 55 GTITCLKFTPEGSHLISCS-DDGSIAIFRVGSWQLEKLFK-KAHKGTAVNHISIHP--SG 110
T L + P + + + G ++ + + H + V + P
Sbjct: 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77
Query: 111 KLALSVGKDKTLRTWNLVKG---RSAYITNLSSYGVGFENLDSVVWSPEGLLYAIPIQN 166
+ S + + W S + S + V + + W EG + +
Sbjct: 78 QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG 136
Score = 43.4 bits (100), Expect = 2e-05
Identities = 9/78 (11%), Positives = 26/78 (33%), Gaps = 1/78 (1%)
Query: 51 MQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSG 110
+ + + D +I ++ V + + + + + + + +G
Sbjct: 248 QEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATG 307
Query: 111 -KLALSVGKDKTLRTWNL 127
+S+ D TL + L
Sbjct: 308 NGRIISLSLDGTLNFYEL 325
Score = 38.0 bits (86), Expect = 0.001
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 24 SKLAASSGADETVVLYDMVKRK--QSGALMQHEGTITCLKFTPEG-SHLISCSDDGSIAI 80
S+ A+ GAD T+ ++D+ K Q L + + + G +IS S DG++
Sbjct: 263 SQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNF 322
Query: 81 FRV 83
+ +
Sbjct: 323 YEL 325
Score = 37.2 bits (84), Expect = 0.002
Identities = 36/324 (11%), Positives = 83/324 (25%), Gaps = 27/324 (8%)
Query: 1 KYTLTQTF-----VTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALM---Q 52
+L + + T + T+ +A G V D K +
Sbjct: 2 SISLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGH 61
Query: 53 HEGTITCLKFTPE--GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGT------AVNHI 104
+T +KF+P +L S + G + ++ + + K ++ I
Sbjct: 62 GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 121
Query: 105 SIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNLSSYGVGFENLDSVVWSPEGLLYAIPI 164
S G+ VG+ + + + +S + P +
Sbjct: 122 SWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD 181
Query: 165 QNKAVVFSVEKAGVLQTL------KSESKVHSVCFLNETTVCTGNEESAITAYNLTDGSH 218
+ V E + G++ +
Sbjct: 182 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL 241
Query: 219 LWQIKASASRIKGLVFFSIPQETTVCTGNEESAITAYNLTDGSHLWHIKASASRIKGLA- 277
+ G+ S T ++ I +++T + ++
Sbjct: 242 KYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQV 301
Query: 278 ----SHRNHLICITSAGDLVVWEL 297
+ +I ++ G L +EL
Sbjct: 302 GVVATGNGRIISLSLDGTLNFYEL 325
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 42.9 bits (99), Expect = 3e-05
Identities = 19/111 (17%), Positives = 45/111 (40%), Gaps = 1/111 (0%)
Query: 68 HLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVG-KDKTLRTWN 126
++++ + + + ++K+ A G + P G++A + K ++L +
Sbjct: 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62
Query: 127 LVKGRSAYITNLSSYGVGFENLDSVVWSPEGLLYAIPIQNKAVVFSVEKAG 177
LV G + +LS+ ++L SP+G AI + + +
Sbjct: 63 LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQ 113
Score = 37.1 bits (84), Expect = 0.002
Identities = 10/84 (11%), Positives = 27/84 (32%), Gaps = 1/84 (1%)
Query: 10 THSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHL 69
S A + GA + +D +++ S + + + + +GS +
Sbjct: 236 VRIMDVFYFSTAVNPAKTRAFGAYNVLESFD-LEKNASIKRVPLPHSYYSVNVSTDGSTV 294
Query: 70 ISCSDDGSIAIFRVGSWQLEKLFK 93
G +A + + + +
Sbjct: 295 WLGGALGDLAAYDAETLEKKGQVD 318
Score = 32.1 bits (71), Expect = 0.074
Identities = 9/108 (8%), Positives = 25/108 (23%), Gaps = 6/108 (5%)
Query: 25 KLAASSGADETVVLYDMVKRK-QSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRV 83
A + ++ D+ + + + P + + F +
Sbjct: 210 DPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDL 267
Query: 84 GSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGR 131
K H + +++ G G L ++
Sbjct: 268 EKNASIKRVPLPH---SYYSVNVSTDGSTVWLGGALGDLAAYDAETLE 312
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 38.2 bits (88), Expect = 0.001
Identities = 16/107 (14%), Positives = 36/107 (33%), Gaps = 3/107 (2%)
Query: 56 TITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALS 115
T + E ++ D G IA+ +++++ + G AV+ + SG+
Sbjct: 22 TQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDT---GYAVHISRLSASGRYLFV 78
Query: 116 VGKDKTLRTWNLVKGRSAYITNLSSYGVGFENLDSVVWSPEGLLYAI 162
+G+D + +L + + S + E
Sbjct: 79 IGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIA 125
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 37.8 bits (86), Expect = 0.001
Identities = 14/123 (11%), Positives = 32/123 (26%), Gaps = 5/123 (4%)
Query: 10 THSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALM-QHEGTITCLKFTPEGSH 68
S ++ + A++ + D+ K +P+ +
Sbjct: 206 EFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPN 265
Query: 69 LISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLV 128
I + +A + + +L K H ++ G G L +N
Sbjct: 266 QIYGVLN-RLAKYDLKQRKLIKAANLDH---TYYCVAFDKKGDKLYLGGTFNDLAVFNPD 321
Query: 129 KGR 131
Sbjct: 322 TLE 324
Score = 34.7 bits (78), Expect = 0.011
Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 2/90 (2%)
Query: 5 TQTFVTHSHTASVRSVAATSKLA-ASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFT 63
T T T + + K G + YD+ +RK A + T C+ F
Sbjct: 242 THTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAA-NLDHTYYCVAFD 300
Query: 64 PEGSHLISCSDDGSIAIFRVGSWQLEKLFK 93
+G L +A+F + + K K
Sbjct: 301 KKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 330
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli
[TaxId: 562]}
Length = 333
Score = 37.1 bits (84), Expect = 0.002
Identities = 12/89 (13%), Positives = 29/89 (32%), Gaps = 3/89 (3%)
Query: 70 ISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGK-LALSVGKDKTLRTWNLV 128
I+ + I ++ + L + V + + P + L + V + + + +
Sbjct: 8 IASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA 67
Query: 129 KGRSAYITNLSSYGVGFENLDSVVWSPEG 157
A S G +L + +G
Sbjct: 68 PDDGALTFAAESALPG--SLTHISTDHQG 94
Score = 27.1 bits (58), Expect = 3.0
Identities = 5/32 (15%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
Query: 53 HEGTITCLKFTPEGSHLI-SCSDDGSIAIFRV 83
E G +LI + I+++ +
Sbjct: 274 TETQPRGFNVDHSGKYLIAAGQKSHHISVYEI 305
>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain
{Methylophilus methylotrophus, w3a1 [TaxId: 17]}
Length = 571
Score = 35.3 bits (80), Expect = 0.009
Identities = 20/129 (15%), Positives = 36/129 (27%), Gaps = 13/129 (10%)
Query: 147 NLDSVVWSPEGLLYAIPIQNKAVVFSVEKAGVLQTLKSESKVHSVCFLNETTVCTGNEES 206
N + PE + + + + ++ T E
Sbjct: 387 NQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGA--TLAMYPGPNGPTKKEMG 444
Query: 207 AITAYNLTDGSHLWQIKASASRIKGLVFFSIPQETT----VCTGNEESAITAYNLTDGSH 262
I A++LT G W + G + T V + + A + DG
Sbjct: 445 QIRAFDLTTGKAKWTKWEKFAAWGGTL-------YTKGGLVWYATLDGYLKALDNKDGKE 497
Query: 263 LWHIKASAS 271
LW+ K +
Sbjct: 498 LWNFKMPSG 506
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 426
Score = 34.9 bits (79), Expect = 0.013
Identities = 21/172 (12%), Positives = 49/172 (28%), Gaps = 17/172 (9%)
Query: 26 LAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGS 85
+ + + L D +K + + + + G +L+ D I + + +
Sbjct: 34 FSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWA 92
Query: 86 WQLEKLFK----KAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNLSSY 141
+ K+ + + + + + I +
Sbjct: 93 KEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM 152
Query: 142 GVGFENLDSVVWSPEGLLYAIPIQNKAVVFSVEKAGVLQTLKSESKVHSVCF 193
V D+ + PE + AI + S E + +K KV V +
Sbjct: 153 TV-----DTQTYHPEPRVAAI-------IASHEHPEFIVNVKETGKVLLVNY 192
>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain
{Methylobacterium extorquens [TaxId: 408]}
Length = 596
Score = 33.8 bits (76), Expect = 0.025
Identities = 19/129 (14%), Positives = 37/129 (28%), Gaps = 11/129 (8%)
Query: 147 NLDSVVWSPEGLLYAIPIQNKAVVFSVEKAGVLQTLKSESKVHSVCFLNETTVCTGNEES 206
N + P+ L+ + I + + + ++ +
Sbjct: 394 NQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLG 453
Query: 207 AITAYNLTDGSHLWQIKASASRIKGLVFFSIPQETT----VCTGNEESAITAYNLTDGSH 262
I AYN G + W+ + G + T V G + + A + G
Sbjct: 454 QIKAYNAITGDYKWEKMERFAVWGGTM-------ATAGDLVFYGTLDGYLKARDSDTGDL 506
Query: 263 LWHIKASAS 271
LW K +
Sbjct: 507 LWKFKIPSG 515
>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase,
N-terminal domain {Comamonas testosteroni [TaxId: 285]}
Length = 573
Score = 32.6 bits (73), Expect = 0.057
Identities = 19/139 (13%), Positives = 37/139 (26%), Gaps = 21/139 (15%)
Query: 144 GFENLDSVVWSPEGLLYAIPIQNKAVVFSVEKAGVLQTLKSESKVHSVCFLNETTV---- 199
G N + ++P+ L +P QN V +K +
Sbjct: 391 GAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEP 450
Query: 200 CTGNEESAITAYNLTDGSHLWQIK-------ASASRIKGLVFFSIPQETTVCTGNEESAI 252
+ A++ W ++ + + +VF G + +
Sbjct: 451 PKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVF----------QGTADGRL 500
Query: 253 TAYNLTDGSHLWHIKASAS 271
AY+ G LW
Sbjct: 501 VAYHAATGEKLWEAPTGTG 519
>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 582
Score = 32.6 bits (73), Expect = 0.063
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 11/68 (16%)
Query: 208 ITAYNLTDGSHLWQIKASASRIKGLVFFSIPQETT----VCTGNEESAITAYNLTDGSHL 263
+ A + G +W+ K G++ T V TG + A++ G L
Sbjct: 468 LRAMDPVSGKVVWEHKEHLPLWAGVL-------ATAGNLVFTGTGDGYFKAFDAKSGKEL 520
Query: 264 WHIKASAS 271
W + +
Sbjct: 521 WKFQTGSG 528
>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase,
N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}
Length = 560
Score = 32.6 bits (73), Expect = 0.068
Identities = 27/135 (20%), Positives = 44/135 (32%), Gaps = 20/135 (14%)
Query: 144 GFENLDSVVWSPEGLLYAIPIQNKAVVFSVEKAGVLQTLKSESKVHSVCFLNETTVCTGN 203
G N S+ ++P L IP Q V+ E + + F + T V
Sbjct: 379 GAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAG---FADATDVPAAV 435
Query: 204 EESAITAYNLTDGSHLWQIK-------ASASRIKGLVFFSIPQETTVCTGNEESAITAYN 256
A+ A++ W++ + S LVF G + AY+
Sbjct: 436 VSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVF----------QGTAAGQMHAYS 485
Query: 257 LTDGSHLWHIKASAS 271
G LW +A +
Sbjct: 486 ADKGEALWQFEAQSG 500
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 31.8 bits (70), Expect = 0.086
Identities = 5/56 (8%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Query: 39 YDMVKRKQSGALMQHEGTITCLKFTPEGSHL-ISCSDDGSIAIFRVGSWQLEKLFK 93
+ A + + TP+G + ++ S ++++ + +
Sbjct: 228 MIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283
Score = 28.3 bits (61), Expect = 1.2
Identities = 7/43 (16%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 90 KLFKKAHKGTAVNHISIHPSGK-LALSVGKDKTLRTWNLVKGR 131
K+ + G I++ P GK + +++ T+ +
Sbjct: 235 KITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNT 277
>d2rh2a1 b.34.4.1 (A:21-78) R67 dihydrofolate reductase
{Escherichia coli, plasmid PLZ1 [TaxId: 562]}
Length = 58
Score = 27.4 bits (60), Expect = 0.40
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 44 RKQSGALMQHEGTIT---CLKFTPEGSHLISCSDDGSIAIFRVGSWQ 87
RK+SGA Q G I C TPEG + S + GS+ I+ V + +
Sbjct: 11 RKKSGAAWQ--GQIVGWYCTNLTPEGYAVESEAHPGSVQIYPVAALE 55
>d1ic8a2 a.35.1.1 (A:87-180) Hepatocyte nuclear factor 1a
(LFB1/HNF1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 26.0 bits (57), Expect = 2.2
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 98 GTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGR 131
G +H+S H + + K L TW + K R
Sbjct: 52 GLNQSHLSQHLNKGTPMKTQKRAALYTWYVRKQR 85
>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing
enzyme {Neurospora crassa [TaxId: 5141]}
Length = 365
Score = 26.3 bits (57), Expect = 5.5
Identities = 7/60 (11%), Positives = 16/60 (26%), Gaps = 1/60 (1%)
Query: 53 HEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKL 112
+ I+ + F E ++ + + F V S G + +
Sbjct: 38 QDEPISWMTFDHERKNIY-GAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRA 96
>d1ni9a_ e.7.1.2 (A:) Glycerol metabolism protein GlpX {Escherichia
coli [TaxId: 562]}
Length = 328
Score = 25.6 bits (56), Expect = 8.1
Identities = 14/81 (17%), Positives = 22/81 (27%), Gaps = 6/81 (7%)
Query: 49 ALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIH- 107
A+ EGT +++ D G +EKL A I ++
Sbjct: 85 AVDPIEGTRMTAMGQANALAVLAVGDKGC--FLNAPDMYMEKL---IVGPGAKGTIDLNL 139
Query: 108 PSGKLALSVGKDKTLRTWNLV 128
P +V L
Sbjct: 140 PLADNLRNVAAALGKPLSELT 160
>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 245
Score = 25.8 bits (56), Expect = 8.3
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 17/78 (21%)
Query: 139 SSYGVGFENLDSVVWSPEGLLY--------------AIPIQNK-AVVFSVEKAGVLQTLK 183
SS G G++ + +SP+G ++ AI I+ K VVF VEK VL L
Sbjct: 1 SSIGTGYDL-SASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKL-VLSKLY 58
Query: 184 SESKVHSVCFLNETTVCT 201
E + ++
Sbjct: 59 EEGSNKRLFNVDRHVGMA 76
>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26,
N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 470
Score = 25.8 bits (55), Expect = 8.7
Identities = 10/111 (9%), Positives = 32/111 (28%), Gaps = 10/111 (9%)
Query: 118 KDKTLRTWNLVKGRSAYITNLSSYGVGFENLDSVVWSPEGLLYAIPIQNKAV-------- 169
++ + +N G S+ S++ +++ SP+G +
Sbjct: 34 QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93
Query: 170 --VFSVEKAGVLQTLKSESKVHSVCFLNETTVCTGNEESAITAYNLTDGSH 218
++ + K ++ + + V + + I +
Sbjct: 94 YDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPS 144
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.129 0.381
Gapped
Lambda K H
0.267 0.0513 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,098,146
Number of extensions: 45913
Number of successful extensions: 272
Number of sequences better than 10.0: 1
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 90
Length of query: 327
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 241
Effective length of database: 1,226,816
Effective search space: 295662656
Effective search space used: 295662656
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.7 bits)