BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7483
(230 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D87|A Chain A, Solution Structure Of The Ch Domain From Human Smoothelin
Splice Isoform L2
Length = 128
Score = 100 bits (249), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 58/86 (67%), Gaps = 9/86 (10%)
Query: 153 SASSIKDRMLSW---------NVQIDNFSTSWNDGMAFCALIHHFYPHAFDFDKLSPQQR 203
+S IK +L W +V I NFS+SW+DGMAFCAL+H+F+P AFD+ +LSPQ R
Sbjct: 4 GSSGIKQMLLDWCRAKTRGYEHVDIQNFSSSWSDGMAFCALVHNFFPEAFDYGQLSPQNR 63
Query: 204 RHNFELAFRVAEEEADLMPLLDVEDI 229
R NFE+AF AE AD LLD ED+
Sbjct: 64 RQNFEVAFSSAETHADCPQLLDTEDM 89
>pdb|2JV9|A Chain A, The Solution Structure Of Calponin Homology Domain From
Smoothelin-Like 1
pdb|2K3S|A Chain A, Haddock-Derived Structure Of The Ch-Domain Of The
Smoothelin-Like 1 Complexed With The C-Domain Of
Apocalmodulin
Length = 119
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 55/81 (67%), Gaps = 9/81 (11%)
Query: 158 KDRMLSW---------NVQIDNFSTSWNDGMAFCALIHHFYPHAFDFDKLSPQQRRHNFE 208
K+ +L W +V I NFS+SW+ GMAFCALIH F+P AFD+ +L P +RRHNF
Sbjct: 6 KNMLLEWCRAMTRNYEHVDIQNFSSSWSSGMAFCALIHKFFPEAFDYAELDPAKRRHNFT 65
Query: 209 LAFRVAEEEADLMPLLDVEDI 229
LAF AE+ AD LL+V+D+
Sbjct: 66 LAFSTAEKLADCAQLLEVDDM 86
>pdb|1BKR|A Chain A, Calponin Homology (Ch) Domain From Human Beta-Spectrin At
1.1 Angstrom Resolution
Length = 109
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 46/83 (55%), Gaps = 9/83 (10%)
Query: 156 SIKDRMLSW---------NVQIDNFSTSWNDGMAFCALIHHFYPHAFDFDKLSPQQRRHN 206
S KD +L W NV I NF+TSW DGMAF ALIH P DFDKL +N
Sbjct: 3 SAKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHYN 62
Query: 207 FELAFRVAEEEADLMPLLDVEDI 229
+ AF +AE+ L LLD EDI
Sbjct: 63 LQNAFNLAEQHLGLTKLLDPEDI 85
>pdb|1AA2|A Chain A, Calponin Homology (Ch) Domain From Human Beta-Spectrin
Length = 108
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 46/83 (55%), Gaps = 9/83 (10%)
Query: 156 SIKDRMLSW---------NVQIDNFSTSWNDGMAFCALIHHFYPHAFDFDKLSPQQRRHN 206
S KD +L W NV I NF+TSW DGMAF ALIH P DFDKL +N
Sbjct: 2 SAKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHYN 61
Query: 207 FELAFRVAEEEADLMPLLDVEDI 229
+ AF +AE+ L LLD EDI
Sbjct: 62 LQNAFNLAEQHLGLTKLLDPEDI 84
>pdb|1WYQ|A Chain A, Solution Structure Of The Second Ch Domain Of Human
Spectrin Beta Chain, Brain 2
Length = 127
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 47/86 (54%), Gaps = 9/86 (10%)
Query: 153 SASSIKDRMLSW---------NVQIDNFSTSWNDGMAFCALIHHFYPHAFDFDKLSPQQR 203
+S KD +L W NV + NF+TSW DG+AF A++H P DF+ L
Sbjct: 4 GSSGAKDALLLWCQMKTAGYPNVNVHNFTTSWRDGLAFNAIVHKHRPDLLDFESLKKCNA 63
Query: 204 RHNFELAFRVAEEEADLMPLLDVEDI 229
+N + AF +AE+E L LLD ED+
Sbjct: 64 HYNLQNAFNLAEKELGLTKLLDPEDV 89
>pdb|2EYI|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human
Alpha-Actinin 1 At 1.7 Angstrom Resolution
pdb|2EYN|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human
Alpha-Actinin 1 At 1.8 Angstrom Resolution
Length = 234
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 149 NLARSASSIKDRMLSW---------NVQIDNFSTSWNDGMAFCALIHHFYPHAFDFDKLS 199
+++ +S K+ +L W NV I NF SW DG+ FCALIH P D+ KL
Sbjct: 113 DISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPELIDYGKLR 172
Query: 200 PQQRRHNFELAFRVAEEEADLMPLLDVEDI 229
N AF VAE+ D+ +LD EDI
Sbjct: 173 KDDPLTNLNTAFDVAEKYLDIPKMLDAEDI 202
>pdb|1TJT|A Chain A, X-Ray Structure Of The Human Alpha-Actinin Isoform 3 At
2.2a Resolution
Length = 250
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 149 NLARSASSIKDRMLSW---------NVQIDNFSTSWNDGMAFCALIHHFYPHAFDFDKLS 199
+++ +S K+ +L W NV + NF TSW DG+A CALIH P D+ KL
Sbjct: 129 DISVEETSAKEGLLLWCQRKTAPYRNVNVQNFHTSWKDGLALCALIHRHRPDLIDYAKLR 188
Query: 200 PQQRRHNFELAFRVAEEEADLMPLLDVEDI 229
N AF VAE+ D+ +LD EDI
Sbjct: 189 KDDPIGNLNTAFEVAEKYLDIPKMLDAEDI 218
>pdb|1WKU|A Chain A, High Resolution Structure Of The Human Alpha-Actinin
Isoform 3
pdb|1WKU|B Chain B, High Resolution Structure Of The Human Alpha-Actinin
Isoform 3
Length = 254
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 149 NLARSASSIKDRMLSW---------NVQIDNFSTSWNDGMAFCALIHHFYPHAFDFDKLS 199
+++ +S K+ +L W NV + NF TSW DG+A CALIH P D+ KL
Sbjct: 133 DISVEETSAKEGLLLWCQRKTAPYRNVNVQNFHTSWKDGLALCALIHRHRPDLIDYAKLR 192
Query: 200 PQQRRHNFELAFRVAEEEADLMPLLDVEDI 229
N AF VAE+ D+ +LD EDI
Sbjct: 193 KDDPIGNLNTAFEVAEKYLDIPKMLDAEDI 222
>pdb|1SJJ|A Chain A, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha-
Actinin
pdb|1SJJ|B Chain B, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha-
Actinin
Length = 863
Score = 64.3 bits (155), Expect = 5e-11, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 149 NLARSASSIKDRMLSW---------NVQIDNFSTSWNDGMAFCALIHHFYPHAFDFDKLS 199
+++ +S K+ +L W NV I NF SW DG+ FCALIH P D+ KL
Sbjct: 114 DISVEETSAKEGLLLWYQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPELIDYGKLR 173
Query: 200 PQQRRHNFELAFRVAEEEADLMPLLDVEDI 229
N AF VAE+ D+ +LD EDI
Sbjct: 174 KDDPLTNLNTAFDVAEKYLDIPKMLDAEDI 203
>pdb|2R0O|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human
Alpha-Actinin-4 Mutant(K255e)
pdb|2R0O|B Chain B, Crystal Structure Of The Actin-Binding Domain Of Human
Alpha-Actinin-4 Mutant(K255e)
Length = 237
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 149 NLARSASSIKDRMLSW---------NVQIDNFSTSWNDGMAFCALIHHFYPHAFDFDKLS 199
+++ +S K+ +L W NV + NF SW DG+AF ALIH P ++DKL
Sbjct: 118 DISVEETSAKEGLLLWCQRKTAPYKNVNVQNFHISWKDGLAFNALIHRHRPELIEYDKLR 177
Query: 200 PQQRRHNFELAFRVAEEEADLMPLLDVEDI 229
N AF VAE+ D+ +LD EDI
Sbjct: 178 KDDPVTNLNNAFEVAEKYLDIPKMLDAEDI 207
>pdb|2D88|A Chain A, Solution Structure Of The Ch Domain From Human Mical-3
Protein
Length = 121
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 14/85 (16%)
Query: 149 NLARSASSIKDRMLSW---------NVQIDNFSTSWNDGMAFCALIHHFYPHAFDFDKLS 199
+ARS+ ++L W V + + + SW G+A CA+IH + P DFD L
Sbjct: 7 GVARSS-----KLLGWCQRQTDGYAGVNVTDLTMSWKSGLALCAIIHRYRPDLIDFDSLD 61
Query: 200 PQQRRHNFELAFRVAEEEADLMPLL 224
Q N +LAF +AE+E + P++
Sbjct: 62 EQNVEKNNQLAFDIAEKELGISPIM 86
>pdb|1SH5|A Chain A, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin
pdb|1SH5|B Chain B, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin
pdb|1SH6|A Chain A, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin
Length = 245
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 11/98 (11%)
Query: 143 FKITEPNLARSASSI--KDRMLSW---------NVQIDNFSTSWNDGMAFCALIHHFYPH 191
F+I++ ++ + + K+++L W ++ DNF+TSW DG F A+IH P
Sbjct: 118 FQISDIQVSGQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAIIHRHKPM 177
Query: 192 AFDFDKLSPQQRRHNFELAFRVAEEEADLMPLLDVEDI 229
D +K+ Q N + AF VAE + + LLD ED+
Sbjct: 178 LIDMNKVYRQTNLENLDQAFSVAERDLGVTRLLDPEDV 215
>pdb|2D89|A Chain A, Solution Structure Of The Ch Domain From Human Eh Domain
Binding Protein 1
Length = 119
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 33/47 (70%)
Query: 165 NVQIDNFSTSWNDGMAFCALIHHFYPHAFDFDKLSPQQRRHNFELAF 211
V+I NF+TSW +G++FCA++HHF P D+ L+PQ + N + A+
Sbjct: 27 GVKITNFTTSWRNGLSFCAILHHFRPDLIDYKSLNPQDIKENNKKAY 73
>pdb|3F7P|A Chain A, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
pdb|3F7P|B Chain B, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
Length = 296
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 11/98 (11%)
Query: 143 FKITEPNLARSASSI--KDRMLSW---------NVQIDNFSTSWNDGMAFCALIHHFYPH 191
F+I++ ++ + + K+++L W ++ DNF++SW DG F A+IH P
Sbjct: 174 FQISDIQVSGQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAIIHRHKPL 233
Query: 192 AFDFDKLSPQQRRHNFELAFRVAEEEADLMPLLDVEDI 229
D +K+ Q N + AF VAE + + LLD ED+
Sbjct: 234 LIDMNKVYRQTNLENLDQAFSVAERDLGVTRLLDPEDV 271
>pdb|2E9K|A Chain A, Solution Structure Of The Ch Domain From Human Mical-2
Length = 121
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 9/73 (12%)
Query: 160 RMLSW---------NVQIDNFSTSWNDGMAFCALIHHFYPHAFDFDKLSPQQRRHNFELA 210
++L+W +V + + +TSW G+A CA+IH F P +FD L+ N +LA
Sbjct: 13 KLLTWCQQQTEGYQHVNVTDLTTSWRSGLALCAIIHRFRPELINFDSLNEDDAVENNQLA 72
Query: 211 FRVAEEEADLMPL 223
F VAE E + P+
Sbjct: 73 FDVAEREFGIPPV 85
>pdb|1MB8|A Chain A, Crystal Structure Of The Actin Binding Domain Of Plectin
Length = 243
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 11/98 (11%)
Query: 143 FKITEPNLARSASSI--KDRMLSW---------NVQIDNFSTSWNDGMAFCALIHHFYPH 191
F+I++ ++ + + K+++L W ++ DNF++SW DG F A+IH P
Sbjct: 121 FQISDIQVSGQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAIIHRHKPL 180
Query: 192 AFDFDKLSPQQRRHNFELAFRVAEEEADLMPLLDVEDI 229
D +K+ Q N + AF VAE + + LLD ED+
Sbjct: 181 LIDMNKVYRQTNLENLDQAFSVAERDLGVTRLLDPEDV 218
>pdb|1DXX|A Chain A, N-Terminal Actin-Binding Domain Of Human Dystrophin
pdb|1DXX|B Chain B, N-Terminal Actin-Binding Domain Of Human Dystrophin
pdb|1DXX|C Chain C, N-Terminal Actin-Binding Domain Of Human Dystrophin
pdb|1DXX|D Chain D, N-Terminal Actin-Binding Domain Of Human Dystrophin
Length = 246
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 10/79 (12%)
Query: 161 MLSW---------NVQIDNFSTSWNDGMAFCALIHHFYPHAFDFDKLSPQQRR-HNFELA 210
+LSW V + NF+TSW+DG+A ALIH P FD++ + QQ E A
Sbjct: 140 LLSWVRQSTRNYPQVNVINFTTSWSDGLALNALIHSHRPDLFDWNSVVSQQSATQRLEHA 199
Query: 211 FRVAEEEADLMPLLDVEDI 229
F +A + + LLD ED+
Sbjct: 200 FNIARYQLGIEKLLDPEDV 218
>pdb|1QAG|A Chain A, Actin Binding Region Of The Dystrophin Homologue Utrophin
pdb|1QAG|B Chain B, Actin Binding Region Of The Dystrophin Homologue Utrophin
Length = 226
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Query: 161 MLSW---------NVQIDNFSTSWNDGMAFCALIHHFYPHAFDFDKLSPQQRRHNFELAF 211
+LSW V + NF+TSW DG+AF A++H P F +DK+ E AF
Sbjct: 126 LLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLFSWDKVVKXSPIERLEHAF 185
Query: 212 RVAEEEADLMPLLDVEDI 229
A+ + LLD ED+
Sbjct: 186 SKAQTYLGIEKLLDPEDV 203
>pdb|1BHD|A Chain A, Second Calponin Homology Domain From Utrophin
pdb|1BHD|B Chain B, Second Calponin Homology Domain From Utrophin
Length = 118
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Query: 161 MLSW---------NVQIDNFSTSWNDGMAFCALIHHFYPHAFDFDKLSPQQRRHNFELAF 211
+LSW V + NF+TSW DG+AF A++H P F +DK+ E AF
Sbjct: 13 LLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLFSWDKVVKMSPIERLEHAF 72
Query: 212 RVAEEEADLMPLLDVEDI 229
A+ + LLD ED+
Sbjct: 73 SKAQTYLGIEKLLDPEDV 90
>pdb|1WYL|A Chain A, Solution Structure Of The Ch Domain Of Human Nedd9
Interacting Protein With Calponin Homology And Lim
Domains
Length = 116
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
Query: 153 SASSIKDRMLSW---------NVQIDNFSTSWNDGMAFCALIHHFYPHAFDFDKLSPQQR 203
+S ++ +L W V + + S+SW DG+A CAL++ P + +L
Sbjct: 4 GSSGTQEELLRWCQEQTAGYPGVHVSDLSSSWADGLALCALVYRLQPGLLEPSELQGLGA 63
Query: 204 RHNFELAFRVAEEEADLMPLLDVEDI 229
A +VAE E + P++ + +
Sbjct: 64 LEATAWALKVAENELGITPVVSAQAV 89
>pdb|2DK9|A Chain A, Solution Structure Of Calponin Homology Domain Of Human
Mical-1
Length = 118
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%)
Query: 165 NVQIDNFSTSWNDGMAFCALIHHFYPHAFDFDKLSPQQRRHNFELAFRVAEEEADLMPLL 224
V + + S+SW DG+A CAL++ P + +L A +VAE E + P++
Sbjct: 31 GVHVSDLSSSWADGLALCALVYRLQPGLLEPSELQGLGALEATAWALKVAENELGITPVV 90
Query: 225 DVEDI 229
+ +
Sbjct: 91 SAQAV 95
>pdb|4B7L|A Chain A, Crystal Structure Of Human Filamin B Actin Binding Domain
With 1st Filamin Repeat
pdb|4B7L|B Chain B, Crystal Structure Of Human Filamin B Actin Binding Domain
With 1st Filamin Repeat
Length = 347
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Query: 158 KDRMLSW------NVQIDNFSTSWNDGMAFCALIHHFYPHAF-DFDKLSPQQRRHNFELA 210
K R+L W + I NF+ +W DG A AL+ P D++ PQ+ N A
Sbjct: 142 KQRLLGWIQNKIPYLPITNFNQNWQDGKALGALVDSCAPGLCPDWESWDPQKPVDNAREA 201
Query: 211 FRVAEE 216
+ A++
Sbjct: 202 MQQADD 207
>pdb|3FER|A Chain A, Crystal Structure Of N-Terminal Actin-Binding Domain From
Human Filamin B (Tandem Ch-Domains). Northeast
Structural Genomics Consortium Target Hr5571a.
pdb|3FER|B Chain B, Crystal Structure Of N-Terminal Actin-Binding Domain From
Human Filamin B (Tandem Ch-Domains). Northeast
Structural Genomics Consortium Target Hr5571a.
pdb|3FER|C Chain C, Crystal Structure Of N-Terminal Actin-Binding Domain From
Human Filamin B (Tandem Ch-Domains). Northeast
Structural Genomics Consortium Target Hr5571a.
pdb|3FER|D Chain D, Crystal Structure Of N-Terminal Actin-Binding Domain From
Human Filamin B (Tandem Ch-Domains). Northeast
Structural Genomics Consortium Target Hr5571a
Length = 262
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 11/69 (15%)
Query: 158 KDRMLSW------NVQIDNFSTSWNDGMAFCALIHHFYPHAF-DFDKLSPQQRRHNFELA 210
K R+L W + I NF+ +W DG A AL+ P D++ PQ+ N
Sbjct: 152 KQRLLGWIQNKIPYLPITNFNQNWQDGKALGALVDSCAPGLCPDWESWDPQKPVDN---- 207
Query: 211 FRVAEEEAD 219
R A ++AD
Sbjct: 208 AREAXQQAD 216
>pdb|2WA5|A Chain A, Crystal Structure Of Human Filamin B Actin Binding Domain
At 1.9 Angstroms Resolution
Length = 245
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Query: 158 KDRMLSW------NVQIDNFSTSWNDGMAFCALIHHFYPHAF-DFDKLSPQQRRHNFELA 210
K R+L W + I NF+ +W DG A AL+ P D++ PQ+ N A
Sbjct: 145 KQRLLGWIQNKIPYLPITNFNQNWQDGKALGALVDSCAPGLCPDWESWDPQKPVDNAREA 204
Query: 211 FRVAEE 216
+ A++
Sbjct: 205 MQQADD 210
>pdb|2WA7|A Chain A, Structure Of The M202v Mutant Of Human Filamin B Actin
Binding Domain At 1.85 Angstroms Resolution
Length = 245
Score = 31.2 bits (69), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Query: 158 KDRMLSW------NVQIDNFSTSWNDGMAFCALIHHFYPHAF-DFDKLSPQQRRHNFELA 210
K R+L W + I NF+ +W DG A AL+ P D++ PQ+ N A
Sbjct: 145 KQRLLGWIQNKIPYLPITNFNQNWQDGKALGALVDSCAPGLCPDWESWDPQKPVDNAREA 204
Query: 211 FRVAEE 216
+ A++
Sbjct: 205 VQQADD 210
>pdb|2WA6|A Chain A, Structure Of The W148r Mutant Of Human Filamin B Actin
Binding Domain At 1.95 Angstroms Resolution
Length = 245
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 168 IDNFSTSWNDGMAFCALIHHFYPHAF-DFDKLSPQQRRHNFELAFRVAEE 216
I NF+ +W DG A AL+ P D++ PQ+ N A + A++
Sbjct: 161 ITNFNQNWQDGKALGALVDSCAPGLCPDWESWDPQKPVDNAREAMQQADD 210
>pdb|2WFN|A Chain A, Filamin A Actin Binding Domain
pdb|2WFN|B Chain B, Filamin A Actin Binding Domain
Length = 278
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 7/46 (15%)
Query: 158 KDRMLSW------NVQIDNFSTSWNDGMAFCALIHHFYPHAF-DFD 196
K R+L W + I NFS W G A AL+ P D+D
Sbjct: 169 KQRLLGWIQNKLPQLPITNFSRDWQSGRALGALVDSCAPGLCPDWD 214
>pdb|3HOP|A Chain A, Structure Of The Actin-Binding Domain Of Human Filamin A
pdb|3HOP|B Chain B, Structure Of The Actin-Binding Domain Of Human Filamin A
pdb|3HOR|A Chain A, Structure Of The Actin-Binding Domain Of Human Filamin A
(Reduced)
pdb|3HOR|B Chain B, Structure Of The Actin-Binding Domain Of Human Filamin A
(Reduced)
Length = 272
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 7/46 (15%)
Query: 158 KDRMLSW------NVQIDNFSTSWNDGMAFCALIHHFYPHAF-DFD 196
K R+L W + I NFS W G A AL+ P D+D
Sbjct: 172 KQRLLGWIQNKLPQLPITNFSRDWQSGRALGALVDSCAPGLCPDWD 217
>pdb|3HOC|A Chain A, Structure Of The Actin-Binding Domain Of Human Filamin A
Mutant E254k
pdb|3HOC|B Chain B, Structure Of The Actin-Binding Domain Of Human Filamin A
Mutant E254k
Length = 272
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 7/46 (15%)
Query: 158 KDRMLSW------NVQIDNFSTSWNDGMAFCALIHHFYPHAF-DFD 196
K R+L W + I NFS W G A AL+ P D+D
Sbjct: 172 KQRLLGWIQNKLPQLPITNFSRDWQSGRALGALVDSCAPGLCPDWD 217
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.121 0.340
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,217,134
Number of Sequences: 62578
Number of extensions: 217499
Number of successful extensions: 508
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 484
Number of HSP's gapped (non-prelim): 33
length of query: 230
length of database: 14,973,337
effective HSP length: 96
effective length of query: 134
effective length of database: 8,965,849
effective search space: 1201423766
effective search space used: 1201423766
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)