RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7483
(230 letters)
>gnl|CDD|215849 pfam00307, CH, Calponin homology (CH) domain. The CH domain is
found in both cytoskeletal proteins and signal
transduction proteins. The CH domain is involved in
actin binding in some members of the family. However in
calponins there is evidence that the CH domain is not
involved in its actin binding activity. Most member
proteins have from two to four copies of the CH domain,
however some proteins such as calponin have only a
single copy.
Length = 104
Score = 74.2 bits (183), Expect = 3e-17
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 11/83 (13%)
Query: 158 KDRMLSW---------NVQIDNFSTSWNDGMAFCALIHHFYPHAFDFDKLSPQ--QRRHN 206
+ +L W + + NF DG+A CAL++ P D K++ + N
Sbjct: 1 EKALLRWINEVLGEYGGLPVTNFFEDLRDGLALCALLNKLRPGLIDLKKVNKNRFDKLEN 60
Query: 207 FELAFRVAEEEADLMPLLDVEDI 229
LA AE++ + +L+ ED+
Sbjct: 61 LNLALEFAEKKLGVPKVLEPEDL 83
>gnl|CDD|214479 smart00033, CH, Calponin homology domain. Actin binding domains
present in duplicate at the N-termini of spectrin-like
proteins (including dystrophin, alpha-actinin). These
domains cross-link actin filaments into bundles and
networks. A calponin homology domain is predicted in
yeasst Cdc24p.
Length = 101
Score = 63.1 bits (154), Expect = 3e-13
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 168 IDNFSTSWNDGMAFCALIHHFYPHAFDFDKLSPQ----QRRHNFELAFRVAEEEADLMPL 223
+ NFS+ DG+A CAL++ P D K++ ++ N LA AE+ + L
Sbjct: 19 VTNFSSDLKDGVALCALLNSLSPGLVDKKKVAASLSRFKKIENINLALSFAEKLGGKVVL 78
Query: 224 LDVEDI 229
+ ED+
Sbjct: 79 FEPEDL 84
>gnl|CDD|237981 cd00014, CH, Calponin homology domain; actin-binding domain which
may be present as a single copy or in tandem repeats
(which increases binding affinity). The CH domain is
found in cytoskeletal and signal transduction proteins,
including actin-binding proteins like spectrin,
alpha-actinin, dystrophin, utrophin, and fimbrin,
proteins essential for regulation of cell shape
(cortexillins), and signaling proteins (Vav).
Length = 107
Score = 61.2 bits (149), Expect = 2e-12
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Query: 168 IDNFSTSWNDGMAFCALIHHFYPHAFDFDK---LSPQQRRHNFELAFRVAEEEADLMP-- 222
I+NFST DG+A C L++ P D K LS +R N LA AE+ +P
Sbjct: 22 INNFSTDLKDGIALCKLLNSLSPDLIDKKKINPLSRFKRLENINLALNFAEKLG--VPVV 79
Query: 223 LLDVEDI 229
D ED+
Sbjct: 80 NFDAEDL 86
>gnl|CDD|221350 pfam11971, CAMSAP_CH, CAMSAP CH domain. This domain is the
N-terminal CH domain from the CAMSAP proteins.
Length = 85
Score = 52.3 bits (126), Expect = 3e-09
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Query: 160 RMLSWNVQIDNFSTSWNDGMAFCALIHHFYPHAFDFDK------LSPQQRRHNFELAFRV 213
R + ++N + ++DG A ALIH + P +S +N +L
Sbjct: 5 RCTPLSPPVENLTRDFSDGCALAALIHFYCPQLVPLHDICLKETMSVADSLYNIQLLQEF 64
Query: 214 AEEEADLMPL-LDVEDI 229
EE L +ED+
Sbjct: 65 CEEHLGNRCFHLTLEDL 81
>gnl|CDD|227401 COG5069, SAC6, Ca2+-binding actin-bundling protein fimbrin/plastin
(EF-Hand superfamily) [Cytoskeleton].
Length = 612
Score = 56.1 bits (135), Expect = 3e-09
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 165 NVQIDNFSTSWNDGMAFCALIHHFYPHAFDFDKLSPQQRRH--NFELAFRVAEEEADLMP 222
V +F SW DG+AF ALIH P D + L Q++ N AF A + +
Sbjct: 144 EVDTFDFFRSWRDGLAFSALIHDSRPDTLDPNVLDLQKKNKALNNFQAFENANKVIGIAR 203
Query: 223 LLDVEDI 229
L+ VEDI
Sbjct: 204 LIGVEDI 210
>gnl|CDD|226406 COG3889, COG3889, Predicted solute binding protein [General
function prediction only].
Length = 872
Score = 32.1 bits (73), Expect = 0.24
Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 10/90 (11%)
Query: 1 MQLTNSVQVPSTPASPFAKFKQLERQNSAPKAKGTSETSSAVTTTNGNVTKTEVHKRVLS 60
T + +VP +P + + S TS + TT+ +TKT + +
Sbjct: 768 TSGTFTAEVPQSPT----------KTETTLSYSAYSNTSILIETTSVVITKTVTQTQTTT 817
Query: 61 QTASTHRLTKGTSETSSAVTTTNGNVTKTE 90
+ S + T T ++S TTT+ + T T
Sbjct: 818 SSPSPTQTTSPTQTSTSTTTTTSPSQTTTG 847
>gnl|CDD|176713 cd09011, Glo_EDI_BRP_like_23, This conserved domain belongs to a
superfamily including the bleomycin resistance protein,
glyoxalase I, and type I ring-cleaving dioxygenases.
This protein family belongs to a conserved domain
superfamily that is found in a variety of structurally
related metalloproteins, including the bleomycin
resistance protein, glyoxalase I, and type I
ring-cleaving dioxygenases. A bound metal ion is
required for protein activities for the members of this
superfamily. A variety of metal ions have been found in
the catalytic centers of these proteins including
Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein
superfamily contains members with or without domain
swapping.
Length = 120
Score = 30.0 bits (68), Expect = 0.42
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 185 IHHFYPHAFDFDKLSPQQRRHNFELAFRVAEEEA---DLMPLLDVEDIH 230
+ Y K ++ +NFEL F + +A L ++E +H
Sbjct: 44 LQEGYSWLEGISKADIIEKSNNFELYFEEEDFDAFLDKLKRYDNIEYVH 92
>gnl|CDD|223681 COG0608, RecJ, Single-stranded DNA-specific exonuclease [DNA
replication, recombination, and repair].
Length = 491
Score = 29.7 bits (67), Expect = 1.4
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 177 DGMAFCALIHHFYPHA-FDFDKLSPQQRRHNFELAFRVAEEEADL 220
DG+ A++ D D P + + ++ EE ADL
Sbjct: 48 DGITSAAILAKALRRLGADVDYYIPNRFEEGYGAIRKLKEEGADL 92
>gnl|CDD|185384 PRK15487, PRK15487, O-antigen ligase RfaL; Provisional.
Length = 400
Score = 29.7 bits (67), Expect = 1.4
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Query: 38 TSSAVTTTNGNVTKTEVHKRVLSQTASTHRLTKGTSETSSAVTTTN-------GNVTKTE 90
+ V T + N T L QT S++R T GT T+ + N GN +
Sbjct: 237 AGALVFTQHNNKEDTAKLLYKLQQTDSSYRYTNGTQGTAWDLILENPIKGYGYGNDVYHD 296
Query: 91 VH-KRV 95
V+ KRV
Sbjct: 297 VYNKRV 302
>gnl|CDD|236464 PRK09318, PRK09318, bifunctional 3,4-dihydroxy-2-butanone
4-phosphate synthase/GTP cyclohydrolase II protein;
Provisional.
Length = 387
Score = 29.3 bits (66), Expect = 1.6
Identities = 9/42 (21%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 188 FYPHAFDFDKLSPQQRRHNFELAFRVAEEEADLMPLLDVEDI 229
F +A + L + H+ + ++AE+ + +P+L+++D+
Sbjct: 142 FKRYAVIVEILDEKGDSHDLDYVLKLAEKFS--LPVLEIDDV 181
>gnl|CDD|119384 cd06524, GH25_YegX-like, YegX is an uncharacterized bacterial
protein with a glycosyl hydrolase family 25 (GH25)
catalytic domain that is similar in sequence to the
CH-type (Chalaropsis-type) lysozymes of the GH25 family
of endolysins.
Length = 194
Score = 28.1 bits (63), Expect = 2.8
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 16/63 (25%)
Query: 171 FSTSWNDGMAFCALI----HHFYPHAFDFDKLSPQQRRHNFELAFRV--AEEEADLMPLL 224
F T+W G +I H + P++ P+Q+ NF DL P+L
Sbjct: 44 FPTNWE-GAKEAGIIRGAYHFYRPNS------DPKQQADNF---LNTVKLLGPGDLPPVL 93
Query: 225 DVE 227
DVE
Sbjct: 94 DVE 96
>gnl|CDD|216421 pfam01299, Lamp, Lysosome-associated membrane glycoprotein (Lamp).
Length = 305
Score = 28.2 bits (63), Expect = 3.4
Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 1/87 (1%)
Query: 35 TSETSSAVTTTNGNVTKTEVHKRVLSQTASTHRLTKGTSETSSAVTTTNGNVT-KTEVHK 93
S+T+ T+ V + T +T+R T+ + VT T +VT + +
Sbjct: 12 LSDTTLFPNATSKGVKTVTSSTDTKAPTNTTYRCVSSTTVPMTNVTVTLHDVTLQAYLSN 71
Query: 94 RVLSQTASTHRLTKANSVQVPSTPASP 120
S+T + + V + SP
Sbjct: 72 GTFSKTETRCEADTPSPTTVATPSPSP 98
>gnl|CDD|216350 pfam01183, Glyco_hydro_25, Glycosyl hydrolases family 25.
Length = 176
Score = 27.7 bits (62), Expect = 3.6
Identities = 12/45 (26%), Positives = 15/45 (33%), Gaps = 3/45 (6%)
Query: 184 LIHHFYPHAFDFDKLSPQQRRHNFELAFRVAEEEADLMPLLDVED 228
L Y H F + F V + L P+LDVE
Sbjct: 50 LKVGAY-HFARFGSSNAAAEADYF--LSNVPGDAKTLPPVLDVEW 91
>gnl|CDD|220518 pfam10008, DUF2251, Uncharacterized protein conserved in bacteria
(DUF2251). Members of this family of hypothetical
bacterial proteins have no known function.
Length = 97
Score = 26.6 bits (59), Expect = 4.4
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 153 SASSIKDRMLSWNVQIDNFSTSWNDGMAFCALIHHFYPHA-FDFDKL 198
+ + D VQI W++ AL+ + YPHA FDF +L
Sbjct: 45 NVEDVTDLHEPRKVQI-----CWSEDGYKAALLINGYPHAVFDFVRL 86
>gnl|CDD|225086 COG2175, TauD, Probable taurine catabolism dioxygenase [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 286
Score = 27.7 bits (62), Expect = 5.3
Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
Query: 90 EVHKRVLSQTASTHRLTKANSVQVPSTPASPFAKFKQLERQNSAPNARSESPLFKITEPN 149
E + +L + H + + PS P A+F+++ R+N +E P+ T P
Sbjct: 143 EPLRELLRGLPAHHSNEERFPRERPSKTERPHARFREIVRKNP----PTEHPVV-RTHPE 197
Query: 150 LARSASSIKDR 160
A + +
Sbjct: 198 TGEKALFVNEG 208
>gnl|CDD|218314 pfam04891, NifQ, NifQ. NifQ is involved in early stages of the
biosynthesis of the iron-molybdenum cofactor (FeMo-co),
which is an integral part of the active site of
dinitrogenase. The conserved C-terminal cysteine
residues may be involved in metal binding.
Length = 167
Score = 26.9 bits (60), Expect = 6.4
Identities = 13/48 (27%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 177 DGMAFCALIHHFYPHAFDFDKLSPQQRRHNFELAFRVAEEEADLMPLL 224
AL+ +P A L+ L + EEE DL LL
Sbjct: 28 SAADLAALLARHFPGA--LAALAALALALPGLLPPPLDEEEDDLRDLL 73
>gnl|CDD|219947 pfam08639, SLD3, DNA replication regulator SLD3. The SLD3 DNA
replication regulator is required for loading and
maintenance of Cdc45 on chromatin during DNA
replication.
Length = 437
Score = 27.5 bits (61), Expect = 6.4
Identities = 27/133 (20%), Positives = 48/133 (36%), Gaps = 21/133 (15%)
Query: 23 LERQNSAPKAKGTSETSSAVTTTNGNVTKTEV--------HKRVLSQTASTHRLTKGTSE 74
L+R++S S +S+ N + K +V H+ L + + K
Sbjct: 308 LKRESSENLLPSLSSRTSSDLLKNKRLQKRQVDLSDSSRQHEEKLKKKQMLNEQKKELKR 367
Query: 75 TSSAVTTTNGNVTKTEVHKRVLSQTASTHRLTKANSVQVPSTPASPFAKFKQLERQNSAP 134
SA+ +N E+ + + +TA VQV +TPA R+ A
Sbjct: 368 AISALKKSNR-----ELSSKDIVETAEKRSSQFGQGVQVTATPAG--------NRKKDAG 414
Query: 135 NARSESPLFKITE 147
+ S F ++
Sbjct: 415 LTEATSSSFPSSD 427
>gnl|CDD|221157 pfam11651, P22_CoatProtein, P22 coat protein - gene protein 5.
This family of proteins represents gene product 5 from
bacteriophage P22. This protein is involved in the
formation of the pro-capsid shells in the bacteriophage.
In total, there are 415 molecules of the coat protein
which are arranged in an icosahedral shell.
Length = 413
Score = 27.4 bits (61), Expect = 7.7
Identities = 16/94 (17%), Positives = 24/94 (25%), Gaps = 5/94 (5%)
Query: 15 SPFAKFKQLERQNSAPKAKGTSETSSAVTTTNGNVTKTEVHKRV--LSQTASTHRLTKGT 72
A F QN G+ V+ R L+ +A+T L G
Sbjct: 205 GRVAGFDFYMSQNVLRHTTGSFGGGLTVSGAGQFGVVANKDNRQATLTVSATTGALKAGD 264
Query: 73 SETSSAVTTTN---GNVTKTEVHKRVLSQTASTH 103
T + V + V + T
Sbjct: 265 IFTIAGVFAVHQITKQALGQLQQFTVTAAVGGTT 298
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.311 0.121 0.340
Gapped
Lambda K H
0.267 0.0727 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,544,807
Number of extensions: 886600
Number of successful extensions: 655
Number of sequences better than 10.0: 1
Number of HSP's gapped: 631
Number of HSP's successfully gapped: 47
Length of query: 230
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 136
Effective length of database: 6,768,326
Effective search space: 920492336
Effective search space used: 920492336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (25.7 bits)