RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7483
(230 letters)
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A
Length = 121
Score = 122 bits (309), Expect = 5e-36
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 9/86 (10%)
Query: 153 SASSIKDRMLSW---------NVQIDNFSTSWNDGMAFCALIHHFYPHAFDFDKLSPQQR 203
S + ++L W V + + + SW G+A CA+IH + P DFD L Q
Sbjct: 6 SGVARSSKLLGWCQRQTDGYAGVNVTDLTMSWKSGLALCAIIHRYRPDLIDFDSLDEQNV 65
Query: 204 RHNFELAFRVAEEEADLMPLLDVEDI 229
N +LAF +AE+E + P++ +++
Sbjct: 66 EKNNQLAFDIAEKELGISPIMTGKEM 91
>1bkr_A Spectrin beta chain; filamentous actin-binding domain,
cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB:
1aa2_A
Length = 109
Score = 121 bits (306), Expect = 9e-36
Identities = 40/84 (47%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 156 SIKDRMLSW---------NVQIDNFSTSWNDGMAFCALIHHFYPHAFDFDKLSPQQRRHN 206
S KD +L W NV I NF+TSW DGMAF ALIH P DFDKL +N
Sbjct: 3 SAKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHYN 62
Query: 207 FELAFRVAEEEADLMPLLDVEDIH 230
+ AF +AE+ L LLD EDI
Sbjct: 63 LQNAFNLAEQHLGLTKLLDPEDIS 86
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain,
actin binding, structural genomics, NPPSFA; NMR {Homo
sapiens} PDB: 2jv9_A 2k3s_A
Length = 128
Score = 121 bits (305), Expect = 2e-35
Identities = 46/88 (52%), Positives = 59/88 (67%), Gaps = 9/88 (10%)
Query: 151 ARSASSIKDRMLSW---------NVQIDNFSTSWNDGMAFCALIHHFYPHAFDFDKLSPQ 201
+ +S IK +L W +V I NFS+SW+DGMAFCAL+H+F+P AFD+ +LSPQ
Sbjct: 2 SSGSSGIKQMLLDWCRAKTRGYEHVDIQNFSSSWSDGMAFCALVHNFFPEAFDYGQLSPQ 61
Query: 202 QRRHNFELAFRVAEEEADLMPLLDVEDI 229
RR NFE+AF AE AD LLD ED+
Sbjct: 62 NRRQNFEVAFSSAETHADCPQLLDTEDM 89
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains;
CH domain, mical, structural genomics; NMR {Homo
sapiens} PDB: 2dk9_A
Length = 116
Score = 120 bits (304), Expect = 2e-35
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 9/87 (10%)
Query: 152 RSASSIKDRMLSW---------NVQIDNFSTSWNDGMAFCALIHHFYPHAFDFDKLSPQQ 202
+S ++ +L W V + + S+SW DG+A CAL++ P + +L
Sbjct: 3 SGSSGTQEELLRWCQEQTAGYPGVHVSDLSSSWADGLALCALVYRLQPGLLEPSELQGLG 62
Query: 203 RRHNFELAFRVAEEEADLMPLLDVEDI 229
A +VAE E + P++ + +
Sbjct: 63 ALEATAWALKVAENELGITPVVSAQAV 89
>1bhd_A Utrophin; calponin homology, actin binding, structural protein;
2.00A {Homo sapiens} SCOP: a.40.1.1
Length = 118
Score = 120 bits (303), Expect = 3e-35
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 9/84 (10%)
Query: 156 SIKDRMLSW---------NVQIDNFSTSWNDGMAFCALIHHFYPHAFDFDKLSPQQRRHN 206
+ + +LSW V + NF+TSW DG+AF A++H P F +DK+
Sbjct: 8 NSEKILLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLFSWDKVVKMSPIER 67
Query: 207 FELAFRVAEEEADLMPLLDVEDIH 230
E AF A+ + LLD ED+
Sbjct: 68 LEHAFSKAQTYLGIEKLLDPEDVA 91
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
structural protein; NMR {Homo sapiens}
Length = 127
Score = 120 bits (302), Expect = 6e-35
Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 9/88 (10%)
Query: 152 RSASSIKDRMLSW---------NVQIDNFSTSWNDGMAFCALIHHFYPHAFDFDKLSPQQ 202
+S KD +L W NV + NF+TSW DG+AF A++H P DF+ L
Sbjct: 3 SGSSGAKDALLLWCQMKTAGYPNVNVHNFTTSWRDGLAFNAIVHKHRPDLLDFESLKKCN 62
Query: 203 RRHNFELAFRVAEEEADLMPLLDVEDIH 230
+N + AF +AE+E L LLD ED++
Sbjct: 63 AHYNLQNAFNLAEKELGLTKLLDPEDVN 90
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 114 bits (287), Expect = 8e-33
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 10/88 (11%)
Query: 151 ARSASSIKDRMLSW---------NVQIDNFSTSWNDGMAFCALIHHFYPHAFDFDKLSPQ 201
S + +L W V+I NF+TSW +G++FCA++HHF P D+ L+PQ
Sbjct: 4 GSSGPNASQSLLVWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLIDYKSLNPQ 63
Query: 202 QRRHNFELAFRVAEEEADLMPLLDVEDI 229
+ N + A+ + LL+ D+
Sbjct: 64 DIKENNKKAY-DGFASIGISRLLEPSDM 90
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain,
contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A
2r0o_A 2eyi_A 2eyn_A 3lue_K
Length = 254
Score = 105 bits (264), Expect = 6e-28
Identities = 35/101 (34%), Positives = 50/101 (49%), Gaps = 9/101 (8%)
Query: 139 ESPLFKITEPNLARSASSIKDRMLSW---------NVQIDNFSTSWNDGMAFCALIHHFY 189
+ + + +++ +S K+ +L W NV + NF TSW DG+A CALIH
Sbjct: 123 WTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYRNVNVQNFHTSWKDGLALCALIHRHR 182
Query: 190 PHAFDFDKLSPQQRRHNFELAFRVAEEEADLMPLLDVEDIH 230
P D+ KL N AF VAE+ D+ +LD EDI
Sbjct: 183 PDLIDYAKLRKDDPIGNLNTAFEVAEKYLDIPKMLDAEDIV 223
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology
domain, structural protein; 2.00A {Mus musculus} SCOP:
a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A
Length = 245
Score = 97.0 bits (241), Expect = 1e-24
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 158 KDRMLSW---------NVQIDNFSTSWNDGMAFCALIHHFYPHAFDFDKLSPQQRRHNFE 208
K+++L W ++ DNF+TSW DG F A+IH P D +K+ Q N +
Sbjct: 135 KEKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAIIHRHKPMLIDMNKVYRQTNLENLD 194
Query: 209 LAFRVAEEEADLMPLLDVEDIH 230
AF VAE + + LLD ED+
Sbjct: 195 QAFSVAERDLGVTRLLDPEDVD 216
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis
bullosa, actin-binding, alternative splicing, coiled
coil, cytoplasm; 2.75A {Homo sapiens}
Length = 296
Score = 94.8 bits (235), Expect = 2e-23
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 147 EPNLARSASSIKDRMLSW---------NVQIDNFSTSWNDGMAFCALIHHFYPHAFDFDK 197
+ + + K+++L W ++ DNF++SW DG F A+IH P D +K
Sbjct: 180 QVSGQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAIIHRHKPLLIDMNK 239
Query: 198 LSPQQRRHNFELAFRVAEEEADLMPLLDVEDIH 230
+ Q N + AF VAE + + LLD ED+
Sbjct: 240 VYRQTNLENLDQAFSVAERDLGVTRLLDPEDVD 272
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin
homology domain, actin-binding, utrophin; 2.6A {Homo
sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Length = 246
Score = 92.3 bits (229), Expect = 6e-23
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 147 EPNLARSASSIKDRMLSW---------NVQIDNFSTSWNDGMAFCALIHHFYPHAFDFDK 197
++ + +LSW V + NF+TSW+DG+A ALIH P FD++
Sbjct: 126 NIMAGLQQTNSEKILLSWVRQSTRNYPQVNVINFTTSWSDGLALNALIHSHRPDLFDWNS 185
Query: 198 -LSPQQRRHNFELAFRVAEEEADLMPLLDVEDIH 230
+S Q E AF +A + + LLD ED+
Sbjct: 186 VVSQQSATQRLEHAFNIARYQLGIEKLLDPEDVD 219
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 88.0 bits (217), Expect = 3e-20
Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 9/100 (9%)
Query: 139 ESPLFKITEPNLARSASSIKDRMLSW---------NVQIDNFSTSWNDGMAFCALIHHFY 189
+ + + +++ +S K+ +L W NV I NF SW DG+ FCALIH
Sbjct: 104 WTIILRFAIQDISVEETSAKEGLLLWYQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHR 163
Query: 190 PHAFDFDKLSPQQRRHNFELAFRVAEEEADLMPLLDVEDI 229
P D+ KL N AF VAE+ D+ +LD EDI
Sbjct: 164 PELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDI 203
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural
protein, actin-crosslinking, myogenesis, cytoskeleton;
1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Length = 245
Score = 82.7 bits (204), Expect = 2e-19
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 7/98 (7%)
Query: 139 ESPLFKITEPNLARSASSIKDRMLSW------NVQIDNFSTSWNDGMAFCALIHHFYPHA 192
S E + + K R+L W + I NF+ +W DG A AL+ P
Sbjct: 126 ISMPVWEDEGDDDAKKQTPKQRLLGWIQNKIPYLPITNFNQNWQDGKALGALVDSCAPGL 185
Query: 193 F-DFDKLSPQQRRHNFELAFRVAEEEADLMPLLDVEDI 229
D++ PQ+ N A + A++ + ++ E+I
Sbjct: 186 CPDWESWDPQKPVDNAREAVQQADDWLGVPQVITPEEI 223
>3hoc_A Filamin-A; calponin homology domain, actin binding domain,
acetylation, actin-binding, alternative splicing,
cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB:
3hop_A 3hor_A 2wfn_A
Length = 272
Score = 82.4 bits (203), Expect = 5e-19
Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 7/97 (7%)
Query: 140 SPLFKITEPNLARSASSIKDRMLSW------NVQIDNFSTSWNDGMAFCALIHHFYPHAF 193
S E + + K R+L W + I NFS W G A AL+ P
Sbjct: 154 SMPMWDEEEDEEAKKQTPKQRLLGWIQNKLPQLPITNFSRDWQSGRALGALVDSCAPGLC 213
Query: 194 -DFDKLSPQQRRHNFELAFRVAEEEADLMPLLDVEDI 229
D+D + N A + A++ + ++ E+I
Sbjct: 214 PDWDSWDASKPVTNAREAMQQADDWLGIPQVITPEEI 250
Score = 28.5 bits (63), Expect = 1.7
Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 4/69 (5%)
Query: 165 NVQIDNFSTSWNDGMAFCALIHHFYPHAFDFDK----LSPQQRRHNFELAFRVAEEEADL 220
+ +I N T +DG+ AL+ Q + N +A + E+
Sbjct: 64 SKRIANLQTDLSDGLRLIALLEVLSQKKMHRKHNQRPTFRQMQLENVSVALEFLDRESIK 123
Query: 221 MPLLDVEDI 229
+ +D + I
Sbjct: 124 LVSIDSKAI 132
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain
(ABD), F-actin- crosslinking, structural genomics; 2.40A
{Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Length = 506
Score = 84.0 bits (207), Expect = 6e-19
Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 11/101 (10%)
Query: 140 SPLFKITEPNLARSASSIKDRMLSW----------NVQIDNFSTSWNDGMAFCALIHHFY 189
L + ++ + +L W + NFS D A+ L++
Sbjct: 136 VELLEDSDDVEELLRLPPEKVLLKWMNFHLKKGGYKKTVSNFSADLKDAQAYAFLLNVLA 195
Query: 190 PHAFDFDKLSPQQRRHNFELAFRVAEEEADLMPLLDVEDIH 230
P D L + EL A E + L E+I
Sbjct: 196 PEHCDPATLDAKDPLERAELVLSHA-ERMNCKRYLTAEEIV 235
Score = 70.1 bits (171), Expect = 3e-14
Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 16/94 (17%)
Query: 152 RSASSIKDRMLSW----------NVQIDNFS-TSWNDGMAFCALIHHFYPHAFDFDKLSP 200
+LSW +QI++F S + G+ F L+ P +++ ++
Sbjct: 393 LGKEMTDADILSWANRKVRTMGRKLQIESFKDKSLSSGLFFLNLLWAVEPRVVNWNLVTK 452
Query: 201 QQ----RRHNFELAFRVAEEEADLMPLLDVEDIH 230
+ +R N VA + L EDI
Sbjct: 453 GETDDEKRLNATYIVSVA-RKLGCSVFLLPEDIV 485
Score = 29.7 bits (66), Expect = 0.95
Identities = 7/72 (9%), Positives = 24/72 (33%), Gaps = 6/72 (8%)
Query: 165 NVQIDNFSTSWNDGMAFCALIHHFYPHAFDFDKLSPQ------QRRHNFELAFRVAEEEA 218
+ ++N +G ++ P + ++ S ++ N ++ ++
Sbjct: 291 DSYVNNVFEDVRNGWILLEVLDKVSPSSVNWKHASKPPIKMPFRKVENCNQVIKIGKQLK 350
Query: 219 DLMPLLDVEDIH 230
+ + DI
Sbjct: 351 FSLVNVAGNDIV 362
Score = 27.4 bits (60), Expect = 5.4
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 6/76 (7%)
Query: 160 RMLSWNVQIDNFSTSWNDGMAFCALIHHFYPHAFDFDK------LSPQQRRHNFELAFRV 213
+ L + + DG+ C LI+ P D L+P +R N L
Sbjct: 28 QFLPLDPHSNQLYELVKDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENHTLCLNS 87
Query: 214 AEEEADLMPLLDVEDI 229
A+ + + +D+
Sbjct: 88 AKAVGCSVVNIGTQDL 103
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology,
actin-crosslinking, structural protein; 2.00A
{Schizosaccharomyces pombe} SCOP: a.40.1.1
Length = 513
Score = 82.1 bits (202), Expect = 3e-18
Identities = 18/116 (15%), Positives = 31/116 (26%), Gaps = 11/116 (9%)
Query: 125 KQLERQNSAPNARSESPLFKITEPNLARSASSIKDRMLSW----------NVQIDNFSTS 174
+ L + L + E + +L W + NFS
Sbjct: 130 RGLLGKIDITLHPELYRLLEEDETLDQFLRLPPEKILLRWFNYHLKAANWPRTVSNFSKD 189
Query: 175 WNDGMAFCALIHHFYPHAFDFDKLSPQQRRHNFELAFRVAEEEADLMPLLDVEDIH 230
+DG + L++ P L E + A E+ D L +
Sbjct: 190 VSDGENYTVLLNQLAPELCSRAPLQTTDVLQRAEQVLQNA-EKLDCRKYLTPTAMV 244
Score = 74.4 bits (182), Expect = 1e-15
Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 16/87 (18%)
Query: 158 KDRMLSW----------NVQIDNFST-SWNDGMAFCALIHHFYPHAFDFDKLSP----QQ 202
M++W QI +F S + G+ ++H D++ ++ +
Sbjct: 410 DSDMVAWANSMAAKGGKGSQIRSFRDPSISTGVFVLDVLHGIKSEYVDYNLVTDGSTEEL 469
Query: 203 RRHNFELAFRVAEEEADLMPLLDVEDI 229
N LA +A + + + EDI
Sbjct: 470 AIQNARLAISIA-RKLGAVIFILPEDI 495
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation;
2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Length = 275
Score = 79.6 bits (196), Expect = 5e-18
Identities = 17/123 (13%), Positives = 35/123 (28%), Gaps = 19/123 (15%)
Query: 125 KQLERQNSAPNARSESPLFKITEPNLARSASSIKDRMLSW---------NVQIDNFSTSW 175
L + + L + E S ++ +L W +I+NFS
Sbjct: 137 IGLFADIELSRNEALAALLRDGETLEELMKLSPEELLLRWANFHLENSGWQKINNFSADI 196
Query: 176 NDGMAFCALIHHFYP---------HAFDFDKLSPQQRRHNFELAFRVAEEEADLMPLLDV 226
D A+ L++ P + + E + A ++ +
Sbjct: 197 KDSKAYFHLLNQIAPKGQKEGEPRIDINMSGFNETDDLKRAESMLQQA-DKLGCRQFVTP 255
Query: 227 EDI 229
D+
Sbjct: 256 ADV 258
Score = 26.8 bits (59), Expect = 6.1
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 5/75 (6%)
Query: 160 RMLSWNVQIDNFSTSWNDGMAFCALIHHFYPHAFDF-----DKLSPQQRRHNFELAFRVA 214
++ N D+ + DG+ C +I+ P D KL+P + N LA A
Sbjct: 45 HVIPMNPNTDDLFKAVGDGIVLCKMINLSVPDTIDERAINKKKLTPFIIQENLNLALNSA 104
Query: 215 EEEADLMPLLDVEDI 229
+ + ED+
Sbjct: 105 SAIGCHVVNIGAEDL 119
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.9 bits (131), Expect = 5e-09
Identities = 33/174 (18%), Positives = 53/174 (30%), Gaps = 59/174 (33%)
Query: 79 VTTTNGNVTKTEVHKRVLSQTASTHR--------LTKANSVQVPSTPASPFAKFKQLERQ 130
+TT VT LS +TH LT + K+ Q
Sbjct: 270 LTTRFKQVT------DFLSAATTTHISLDHHSMTLTPDEVKSL-------LLKYLDCRPQ 316
Query: 131 NSAPNARSESPLFKITEPNLARSASSIKDRMLSWN----VQIDNFSTSWNDGMAFCALIH 186
+ + +P L+ A SI+D + +W+ V D +T +I
Sbjct: 317 DLPREVLTTNPRR------LSIIAESIRDGLATWDNWKHVNCDKLTT----------IIE 360
Query: 187 HFYPHAFDFDKLSPQQRRHNFELAFRVAEEEAD----LMPLL-------DVEDI 229
+ L P + R F+ V A L+ L+ DV +
Sbjct: 361 SSL------NVLEPAEYRKMFD-RLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407
Score = 30.2 bits (67), Expect = 0.58
Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 18/72 (25%)
Query: 169 DNFSTSWNDGMAFCALIHHF-----------YPHAF-DFDKLSPQQR-RHNFELAFRVAE 215
D+ + D + + HH + F DF L +Q+ RH+ A+ +
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL--EQKIRHD-STAWNASG 518
Query: 216 EEADLMPLLDVE 227
+ L ++
Sbjct: 519 SILNT--LQQLK 528
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction,
alternative splicing, calponin homology domain,
actin-binding, cell membrane; 1.05A {Homo sapiens} PDB:
2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B*
Length = 131
Score = 33.7 bits (77), Expect = 0.018
Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 5/70 (7%)
Query: 165 NVQIDNFSTSWNDGMAFCALIHHFYPHAFDFDKL-----SPQQRRHNFELAFRVAEEEAD 219
N+++ T + DG+ L+ + S +Q+ N AF + ++
Sbjct: 39 NLEVTELETQFADGVYLVLLMGLLEGYFVPLHSFFLTPDSFEQKVLNVSFAFELMQDGGL 98
Query: 220 LMPLLDVEDI 229
P EDI
Sbjct: 99 EKPKPRPEDI 108
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.080
Identities = 34/140 (24%), Positives = 48/140 (34%), Gaps = 37/140 (26%)
Query: 7 VQVP--S---TPASPFAKFKQLERQNSAPKAK-------GTSETSSAVTTTNGNVTKTEV 54
V P S PAS K L + N + AK T S + +G++++ V
Sbjct: 423 VASPFHSHLLVPASDLIN-KDLVKNNVSFNAKDIQIPVYDT-FDGSDLRVLSGSISERIV 480
Query: 55 ----HKRV----LSQTASTHRLTKGTSETSSAVTTTNGNVTKTEVHKRVLSQTASTHRLT 106
V +Q +TH L G S T+ N T V RV+ A T
Sbjct: 481 DCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGV--RVIV--AGT---- 532
Query: 107 KANSVQVPSTPASPFAKFKQ 126
+ P + FKQ
Sbjct: 533 ------LDINPDDDYG-FKQ 545
Score = 27.3 bits (60), Expect = 5.8
Identities = 28/185 (15%), Positives = 51/185 (27%), Gaps = 39/185 (21%)
Query: 10 PSTPASPFAKFKQ-LERQNSAPKAKGTSETSSAVTTTNGNVTKTEVHKRVLSQTASTHRL 68
P+TPA KF + K + + TE L H L
Sbjct: 54 PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCL--------TEFENCYLEGN-DIHAL 104
Query: 69 TKGTSETSSAVTTTNGNVTKTEVHKRVLSQTASTHR----LTKANSVQVPSTPASPFAKF 124
+ + + K + R++++ + L +A V A A F
Sbjct: 105 AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRA----VGEGNAQLVAIF 160
Query: 125 ----------KQLER--QNSAPNARSESPLFKITEPNLARSASSIKD--RMLSWNVQIDN 170
++L Q L K + L+ + D ++ + + I
Sbjct: 161 GGQGNTDDYFEELRDLYQTYHVLVG---DLIKFSAETLSELIRTTLDAEKVFTQGLNI-- 215
Query: 171 FSTSW 175
W
Sbjct: 216 --LEW 218
>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
structural protein; NMR {Mus musculus} SCOP: a.40.1.1
Length = 144
Score = 30.3 bits (68), Expect = 0.25
Identities = 7/66 (10%), Positives = 18/66 (27%), Gaps = 6/66 (9%)
Query: 157 IKDRMLSWNVQIDNFSTSWNDGMAFCALIHHFYP------HAFDFDKLSPQQRRHNFELA 210
+ + F +G+ L++ YP + ++
Sbjct: 22 CGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPEGSKPVKVPENPPSMVFKQMEQVAQF 81
Query: 211 FRVAEE 216
+ AE+
Sbjct: 82 LKAAED 87
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken
structural genomics/proteomics initiative, RSGI, protein
binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A
Length = 124
Score = 29.2 bits (65), Expect = 0.47
Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 17/83 (20%)
Query: 151 ARSASSIKDR-MLSW----------NVQIDNFS-TSWNDGMAFCALIHHFYPHAFDFDKL 198
S SS D +++W + I +F + + +A LI P ++D +
Sbjct: 1 GSSGSSGNDDIIVNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYDLV 60
Query: 199 SP-----QQRRHNFELAFRVAEE 216
+ +N + A +A
Sbjct: 61 KSGNLTEDDKHNNAKYAVSMARR 83
>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics,
northeast structural genomics consortiu PSI-biology,
calponin-homology domain; NMR {Homo sapiens}
Length = 126
Score = 28.4 bits (63), Expect = 1.0
Identities = 11/56 (19%), Positives = 16/56 (28%), Gaps = 4/56 (7%)
Query: 177 DGMAFCALIHHFYPHA---FDFDKLSPQQRRHNFELAFRVAEEEADLMPLLDVEDI 229
DG+ C L+ P + S + N R L D D+
Sbjct: 47 DGVVLCRLLERLLPGTIEKVYPEPRSESECLSNIREFLRGCGASLRL-ETFDANDL 101
>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha,
NPPSFA, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Length = 121
Score = 27.6 bits (61), Expect = 1.6
Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 5/64 (7%)
Query: 169 DNFSTSWNDGMAFCALIHHFYPHA---FDFDKLSPQQRRHNFELAFRVAEEEADLMPLLD 225
+ +S +G+ C LI+ P + F D + +N F + + D
Sbjct: 33 EFLKSSLKNGVVLCKLINRLMPGSVEKFCLDPQTEADCINNIN-DFLKGCATLQV-EIFD 90
Query: 226 VEDI 229
+D+
Sbjct: 91 PDDL 94
>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Length = 155
Score = 28.0 bits (62), Expect = 1.7
Identities = 12/67 (17%), Positives = 20/67 (29%), Gaps = 5/67 (7%)
Query: 155 SSIKDRMLSWNVQIDNFSTSWNDGMAFCALIHHFYPHAFDFDK-----LSPQQRRHNFEL 209
+ + + +NF DG C LI+ YP K ++
Sbjct: 28 TQCRKDVGRPQPGRENFQNWLKDGTVLCELINALYPEGQAPVKKIQASTMAFKQMEQISQ 87
Query: 210 AFRVAEE 216
+ AE
Sbjct: 88 FLQAAER 94
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 127
Score = 27.2 bits (60), Expect = 2.5
Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 165 NVQIDNFSTSWNDGMAFCALIHHFYPHAFDF----DKLSPQQRRHNFEL 209
+ N S ++DG+ +I ++P + S QQ+ N+
Sbjct: 30 SRPKRNLSRDFSDGVLVAEVIKFYFPKMVEMHNYVPANSLQQKLSNWGH 78
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane,
phosphoprotein, nucleotide-binding, alternative
splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Length = 428
Score = 27.7 bits (61), Expect = 3.8
Identities = 11/77 (14%), Positives = 22/77 (28%), Gaps = 4/77 (5%)
Query: 130 QNSAPNARSESPLFKITEPNLARSASSIKDRMLSWNVQIDNFSTS--WNDGMAFCALIHH 187
+ PN E+ + + + +L D + + LI
Sbjct: 59 RVITPNIDEEASMMEDVGMQDVHFNEDVLMELL--EQCADGLWKAERYELIADIYKLIIP 116
Query: 188 FYPHAFDFDKLSPQQRR 204
Y DF++L+
Sbjct: 117 IYEKRRDFERLAHLYDT 133
>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin
binding,; NMR {Gallus gallus} SCOP: a.40.1.1
Length = 108
Score = 26.2 bits (58), Expect = 4.5
Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 6/66 (9%)
Query: 169 DNFSTSWNDGMAFCALIHHFYPHAFDFDKLSPQQ--RRHNFELAFRVAEE----EADLMP 222
DNF DG+ C LI+ P + Q + N R + D+
Sbjct: 22 DNFMDGLKDGVILCELINKLQPGSVQKVNDPVQNWHKLENIGNFLRAIKHYGVKPHDIFE 81
Query: 223 LLDVED 228
D+ +
Sbjct: 82 ANDLFE 87
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase,
all alpha, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 129
Score = 26.3 bits (58), Expect = 5.7
Identities = 10/68 (14%), Positives = 19/68 (27%), Gaps = 3/68 (4%)
Query: 165 NVQIDNFSTSWNDGMAFCALIHHFYPHAFDFDKLSPQQRRH---NFELAFRVAEEEADLM 221
I + DG+ +I + P+ R N + + +
Sbjct: 37 KRLIRDLQQDVTDGVLLAQIIQVVANEKIEDINGCPKNRSQMIENIDACLNFLAAKGINI 96
Query: 222 PLLDVEDI 229
L E+I
Sbjct: 97 QGLSAEEI 104
>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase;
2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB:
1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A
1dpc_A
Length = 243
Score = 26.0 bits (58), Expect = 9.2
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 7/45 (15%)
Query: 113 VPSTPASPFAKFKQLERQNSAPNARSESPLFKITEPNLARSASSI 157
+P P FAK+ ++E + L +I NL RS ++
Sbjct: 1 IPPIPPVDFAKYGEIEEVPM-------TRLMQIGATNLHRSWLNV 38
>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical,
calmodulin-binding, cell membrane, membrane,
phosphoprotein, protein binding; 2.50A {Homo sapiens}
Length = 193
Score = 26.1 bits (57), Expect = 9.4
Identities = 10/49 (20%), Positives = 15/49 (30%), Gaps = 2/49 (4%)
Query: 169 DNFSTSWNDGMAFCALIHHFYPHAFDFDKL--SPQQRRHNFELAFRVAE 215
+G+ L + F P K+ Q R L FR +
Sbjct: 68 TELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYKATGLHFRHTD 116
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain,
pleckst homology domain, C1 domain, guanine-nucleotide
releasing FA metal-binding; 2.73A {Homo sapiens} PDB:
2d86_A
Length = 587
Score = 26.5 bits (58), Expect = 9.9
Identities = 10/49 (20%), Positives = 24/49 (48%)
Query: 159 DRMLSWNVQIDNFSTSWNDGMAFCALIHHFYPHAFDFDKLSPQQRRHNF 207
R+ Q+ + + DG+ C L+++ PHA + +++ + + F
Sbjct: 24 HRVTWEGAQVCELAQALRDGVLLCQLLNNLLPHAINLREVNLRPQMSQF 72
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.121 0.340
Gapped
Lambda K H
0.267 0.0830 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,030,118
Number of extensions: 156313
Number of successful extensions: 240
Number of sequences better than 10.0: 1
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 45
Length of query: 230
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 140
Effective length of database: 4,188,903
Effective search space: 586446420
Effective search space used: 586446420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (25.2 bits)