RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7483
(230 letters)
>d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 94.5 bits (235), Expect = 9e-26
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Query: 155 SSIKDRMLSW---------NVQIDNFSTSWNDGMAFCALIHHFYPHAFDFDKLSPQQRRH 205
++ + +LSW V + NF+TSW DG+AF A++H P F +DK+
Sbjct: 4 TNSEKILLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLFSWDKVVKMSPIE 63
Query: 206 NFELAFRVAEEEADLMPLLDVEDI 229
E AF A+ + LLD ED+
Sbjct: 64 RLEHAFSKAQTYLGIEKLLDPEDV 87
>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human
(Homo sapiens) [TaxId: 9606]}
Length = 110
Score = 88.8 bits (220), Expect = 2e-23
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 9/83 (10%)
Query: 156 SIKDRMLSW---------NVQIDNFSTSWNDGMAFCALIHHFYPHAFDFDKLSPQQRRHN 206
+ K+++L W ++ DNF+TSW DG F A+IH P D +K+ Q N
Sbjct: 6 TAKEKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAIIHRHKPMLIDMNKVYRQTNLEN 65
Query: 207 FELAFRVAEEEADLMPLLDVEDI 229
+ AF VAE + + LLD ED+
Sbjct: 66 LDQAFSVAERDLGVTRLLDPEDV 88
>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId:
9606]}
Length = 108
Score = 87.3 bits (216), Expect = 6e-23
Identities = 40/84 (47%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 156 SIKDRMLSW---------NVQIDNFSTSWNDGMAFCALIHHFYPHAFDFDKLSPQQRRHN 206
S KD +L W NV I NF+TSW DGMAF ALIH P DFDKL +N
Sbjct: 2 SAKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHYN 61
Query: 207 FELAFRVAEEEADLMPLLDVEDIH 230
+ AF +AE+ L LLD EDI
Sbjct: 62 LQNAFNLAEQHLGLTKLLDPEDIS 85
>d1dxxa2 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 127
Score = 83.4 bits (206), Expect = 3e-21
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 10/85 (11%)
Query: 155 SSIKDRMLSW---------NVQIDNFSTSWNDGMAFCALIHHFYPHAFDFDK-LSPQQRR 204
++ + +LSW V + NF+TSW+DG+A ALIH P FD++ +S Q
Sbjct: 15 TNSEKILLSWVRQSTRNYPQVNVINFTTSWSDGLALNALIHSHRPDLFDWNSVVSQQSAT 74
Query: 205 HNFELAFRVAEEEADLMPLLDVEDI 229
E AF +A + + LLD ED+
Sbjct: 75 QRLEHAFNIARYQLGIEKLLDPEDV 99
>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 500
Score = 78.1 bits (192), Expect = 2e-17
Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 11/101 (10%)
Query: 140 SPLFKITEPNLARSASSIKDRMLSW----------NVQIDNFSTSWNDGMAFCALIHHFY 189
L + ++ + +L W + NFS D A+ L++
Sbjct: 130 VELLEDSDDVEELLRLPPEKVLLKWMNFHLKKGGYKKTVSNFSADLKDAQAYAFLLNVLA 189
Query: 190 PHAFDFDKLSPQQRRHNFELAFRVAEEEADLMPLLDVEDIH 230
P D L + EL AE + L E+I
Sbjct: 190 PEHCDPATLDAKDPLERAELVLSHAERM-NCKRYLTAEEIV 229
Score = 72.7 bits (178), Expect = 1e-15
Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 16/90 (17%)
Query: 155 SSIKDRMLSW----------NVQIDNF-STSWNDGMAFCALIHHFYPHAFDFDKLSPQQ- 202
+LSW +QI++F S + G+ F L+ P +++ ++ +
Sbjct: 390 EMTDADILSWANRKVRTMGRKLQIESFKDKSLSSGLFFLNLLWAVEPRVVNWNLVTKGET 449
Query: 203 ---RRHNFELAFRVAEEEADLMPLLDVEDI 229
+R N VA + L EDI
Sbjct: 450 DDEKRLNATYIVSVA-RKLGCSVFLLPEDI 478
Score = 28.4 bits (63), Expect = 0.80
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 6/76 (7%)
Query: 160 RMLSWNVQIDNFSTSWNDGMAFCALIHHFYPHAFDFD------KLSPQQRRHNFELAFRV 213
+ L + + DG+ C LI+ P D L+P +R N L
Sbjct: 22 QFLPLDPHSNQLYELVKDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENHTLCLNS 81
Query: 214 AEEEADLMPLLDVEDI 229
A+ + + +D+
Sbjct: 82 AKAVGCSVVNIGTQDL 97
>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 505
Score = 76.6 bits (188), Expect = 7e-17
Identities = 17/104 (16%), Positives = 28/104 (26%), Gaps = 11/104 (10%)
Query: 137 RSESPLFKITEPNLARSASSIKDRMLSW----------NVQIDNFSTSWNDGMAFCALIH 186
L + E + +L W + NFS +DG + L++
Sbjct: 134 PELYRLLEEDETLDQFLRLPPEKILLRWFNYHLKAANWPRTVSNFSKDVSDGENYTVLLN 193
Query: 187 HFYPHAFDFDKLSPQQRRHNFELAFRVAEEEADLMPLLDVEDIH 230
P L E + A E+ D L +
Sbjct: 194 QLAPELCSRAPLQTTDVLQRAEQVLQNA-EKLDCRKYLTPTAMV 236
Score = 76.6 bits (188), Expect = 7e-17
Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 16/90 (17%)
Query: 155 SSIKDRMLSW----------NVQIDNF-STSWNDGMAFCALIHHFYPHAFDFDKL----S 199
+ M++W QI +F S + G+ ++H D++ + +
Sbjct: 399 TLSDSDMVAWANSMAAKGGKGSQIRSFRDPSISTGVFVLDVLHGIKSEYVDYNLVTDGST 458
Query: 200 PQQRRHNFELAFRVAEEEADLMPLLDVEDI 229
+ N LA +A + + + EDI
Sbjct: 459 EELAIQNARLAISIA-RKLGAVIFILPEDI 487
Score = 27.7 bits (61), Expect = 1.2
Identities = 18/123 (14%), Positives = 33/123 (26%), Gaps = 13/123 (10%)
Query: 118 ASPFAKFKQLERQNSAPNARSESPLFKITEPNLARSASSIKDRMLSWNVQIDNFSTSWND 177
A F LE N E E ++ L I +F + D
Sbjct: 248 AHLFNTHPGLEPLNEEEKPEIEP---FDAEGEREARVFTLWLNSLDVTPSIHDFFNNLRD 304
Query: 178 GMAFCALIHHFYPHAFDFDK----------LSPQQRRHNFELAFRVAEEEADLMPLLDVE 227
G+ P+ ++ K + + N A + + + + +
Sbjct: 305 GLILLQAYDKITPNTVNWKKVNKAPASGDEMMRFKAVENCNYAVDLGKNQGFSLVGIQGA 364
Query: 228 DIH 230
DI
Sbjct: 365 DIT 367
Score = 25.0 bits (54), Expect = 9.1
Identities = 13/85 (15%), Positives = 23/85 (27%), Gaps = 10/85 (11%)
Query: 156 SIKDRMLSWNVQIDNFSTSWNDGMAFCALIHHFYPHAFDFD---------KLSPQQRRHN 206
+ N + F DG+ LI+ P D L + N
Sbjct: 21 PDVGSRVPINTETFEFFDQCKDGLILSKLINDSVPDTIDERVLNKQRNNKPLDNFKCIEN 80
Query: 207 FELAFRVAEEEADL-MPLLDVEDIH 230
+ A+ + + + DI
Sbjct: 81 NNVVINSAKAMGGISITNIGAGDIL 105
>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 116
Score = 55.4 bits (133), Expect = 9e-11
Identities = 14/92 (15%), Positives = 28/92 (30%), Gaps = 19/92 (20%)
Query: 156 SIKDRMLSW---------NVQIDNFSTSWNDGMAFCALIHHFYPHAFDFDKLSP------ 200
S ++ +L W +I+NFS D A+ L++ P +
Sbjct: 9 SPEELLLRWANFHLENSGWQKINNFSADIKDSKAYFHLLNQIAPKGQKEGEPRIDINMSG 68
Query: 201 ---QQRRHNFELAFRVAEEEADLMPLLDVEDI 229
E + A++ + D+
Sbjct: 69 FNETDDLKRAESMLQQADKL-GCRQFVTPADV 99
>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 124
Score = 52.7 bits (126), Expect = 9e-10
Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 17/92 (18%)
Query: 154 ASSIKDRMLSW----------NVQIDNFS-TSWNDGMAFCALIHHFYPHAFDFDK----- 197
+S D +++W + I +F + + +A LI P ++D
Sbjct: 5 SSGNDDIIVNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYDLVKSGN 64
Query: 198 LSPQQRRHNFELAFRVAEEEADLMPLLDVEDI 229
L+ + +N + A +A ED+
Sbjct: 65 LTEDDKHNNAKYAVSMARRI-GARVYALPEDL 95
>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human
(Homo sapiens) [TaxId: 9606]}
Length = 120
Score = 39.6 bits (92), Expect = 4e-05
Identities = 11/75 (14%), Positives = 22/75 (29%), Gaps = 1/75 (1%)
Query: 157 IKDRMLSWNVQIDNFSTSWNDGMAFCALIHHFYPHAFDFDK-LSPQQRRHNFELAFRVAE 215
IK I + DG +L+ + +K + N ++A
Sbjct: 19 IKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLPREKGRMRFHKLQNVQIALDYLR 78
Query: 216 EEADLMPLLDVEDIH 230
+ + +DI
Sbjct: 79 HRQVKLVNIRNDDIA 93
>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId:
9606]}
Length = 111
Score = 36.1 bits (83), Expect = 6e-04
Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 1/65 (1%)
Query: 167 QIDNFSTSWNDGMAFCALIHHFYPHAFDFDK-LSPQQRRHNFELAFRVAEEEADLMPLLD 225
I+N + DG L+ +K + +N A RV + + +
Sbjct: 28 HIENLFSDLQDGRRLLDLLEGLTGQKLPKEKGSTRVHALNNVNKALRVLQNNNVDLVNIG 87
Query: 226 VEDIH 230
DI
Sbjct: 88 STDIV 92
>d1aoaa1 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-crosslinking
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 131
Score = 33.5 bits (76), Expect = 0.007
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
Query: 165 NVQIDNFSTSWNDGMAFCALIHHFYP-----HAFDFDKLSPQQRRHNFELAFRVAEEEAD 219
N D+ + DG+ C +I+ P A + KL+P + N LA A
Sbjct: 30 NPNTDDLFKAVGDGIVLCKMINLSVPDTIDERAINKKKLTPFIIQENLNLALNSASAIGC 89
Query: 220 LMPLLDVEDI 229
+ + ED+
Sbjct: 90 HVVNIGAEDL 99
>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 159
Score = 30.0 bits (67), Expect = 0.13
Identities = 10/68 (14%), Positives = 19/68 (27%), Gaps = 4/68 (5%)
Query: 167 QIDNFSTSWNDGMAFCALIHHFYPHAFDFDKLSPQ---QRRHNFELAFRVAEE-EADLMP 222
F S +G+ L+ F P S + + N +
Sbjct: 30 PTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIHGIGLPEIF 89
Query: 223 LLDVEDIH 230
++ DI+
Sbjct: 90 HFELTDIY 97
>d1h67a_ a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 108
Score = 26.8 bits (59), Expect = 1.0
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 169 DNFSTSWNDGMAFCALIHHFYPHAFD--FDKLSPQQRRHNFELAFRVAEE 216
DNF DG+ C LI+ P + D + + N R +
Sbjct: 22 DNFMDGLKDGVILCELINKLQPGSVQKVNDPVQNWHKLENIGNFLRAIKH 71
>d1h3za_ b.34.9.2 (A:) Hypothetical protein SPBC215.07c {Fission
yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 108
Score = 25.8 bits (56), Expect = 2.3
Identities = 6/36 (16%), Positives = 14/36 (38%)
Query: 185 IHHFYPHAFDFDKLSPQQRRHNFELAFRVAEEEADL 220
+ A P+ + + A+++A+ DL
Sbjct: 66 LTPLTSEAISQFLEKPKPKTASLIKAYKMAQSTPDL 101
>d2qjza1 a.40.1.1 (A:13-132) Microtubule-associated protein eb1,
N-terminal microtubule binding domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 120
Score = 25.5 bits (56), Expect = 3.7
Identities = 8/58 (13%), Positives = 23/58 (39%), Gaps = 6/58 (10%)
Query: 177 DGMAFCALIHHFYPHAFDFDKL-----SPQQRRHNFELAFRVAEEEADLMPLLDVEDI 229
G A+C + +P + K+ + NF++ + + + ++ V+ +
Sbjct: 28 SGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKI-LQAGFKRMGVDKIIPVDKL 84
>d1ujoa_ a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [TaxId:
10090]}
Length = 144
Score = 25.7 bits (56), Expect = 3.7
Identities = 8/54 (14%), Positives = 17/54 (31%), Gaps = 6/54 (11%)
Query: 169 DNFSTSWNDGMAFCALIHHFYPHAFDFDKLSPQ------QRRHNFELAFRVAEE 216
F +G+ L++ YP K+ ++ + AE+
Sbjct: 34 LGFQVWLKNGVILSKLVNSLYPEGSKPVKVPENPPSMVFKQMEQVAQFLKAAED 87
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.311 0.121 0.340
Gapped
Lambda K H
0.267 0.0664 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 721,722
Number of extensions: 28527
Number of successful extensions: 98
Number of sequences better than 10.0: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 22
Length of query: 230
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 148
Effective length of database: 1,281,736
Effective search space: 189696928
Effective search space used: 189696928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.6 bits)