BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7487
(439 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RHW|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|B Chain B, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|C Chain C, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|D Chain D, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|E Chain E, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RI5|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|B Chain B, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|C Chain C, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|D Chain D, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|E Chain E, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RIA|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|B Chain B, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|C Chain C, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|D Chain D, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|E Chain E, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIF|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|B Chain B, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|C Chain C, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|D Chain D, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|E Chain E, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate
Length = 347
Score = 174 bits (442), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 95/261 (36%), Positives = 135/261 (51%), Gaps = 19/261 (7%)
Query: 2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAF----RQRPGVETLSVGSDFIKNIWVPDTF 57
L ++ K+ + +++ R+ W D RL++ +P L+VG IW+PDTF
Sbjct: 36 LRTISKIDVVNMEYSAQLTLRESWIDKRLSYGVKGDGQPDFVILTVG----HQIWMPDTF 91
Query: 58 FVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESF 117
F NEKQ+Y H N IRIH+ G++ S+R+++ SCPM LQY+PMD Q C I++ S+
Sbjct: 92 FPNEKQAYKHTIDKPNVLIRIHNDGTVLYSVRISLVLSCPMYLQYYPMDVQQCSIDLASY 151
Query: 118 GYTMRDIRYKWNE-GPNSVGVSNEVSLPQFKVLGHRQKDLEISLTTGNYSRLACEIQFVR 176
YT +DI Y W E P + V SLP F++ TG YS L IQ R
Sbjct: 152 AYTTKDIEYLWKEHSPLQLKVGLSSSLPSFQLTNTSTTYCTSVTNTGIYSCLRTTIQLKR 211
Query: 177 SMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARXXXXXXXXXXXXXXXXXSFS------ 230
+YL+Q+YIPS ++V +SWVSFW +R A PAR S
Sbjct: 212 EFSFYLLQLYIPSCMLVIVSWVSFWFDRTAIPARVTLGVTTLLTMTAQSAGINSQLPPVS 271
Query: 231 ----IDVYLGTCFVMVFASLL 247
IDV++G C +F +LL
Sbjct: 272 YIKAIDVWIGACMTFIFCALL 292
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 59/95 (62%)
Query: 343 GNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGXXXXXXXX 402
G YS L IQ R +YL+Q+YIPS ++VI+SWVSFW +R A PARV LG
Sbjct: 198 GIYSCLRTTIQLKREFSFYLLQLYIPSCMLVIVSWVSFWFDRTAIPARVTLGVTTLLTMT 257
Query: 403 XXXXXXNAALPKISYVKSIDVYLGTCFVMVFASLL 437
N+ LP +SY+K+IDV++G C +F +LL
Sbjct: 258 AQSAGINSQLPPVSYIKAIDVWIGACMTFIFCALL 292
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 56/95 (58%)
Query: 248 GNYSRLACEIQFVRSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGXXXXXXXX 307
G YS L IQ R +YL+Q+Y+PS ++V +SWVSFW +R A ARV LG
Sbjct: 198 GIYSCLRTTIQLKREFSFYLLQLYIPSCMLVIVSWVSFWFDRTAIPARVTLGVTTLLTMT 257
Query: 308 XXXXXXNAALPKVSYIKSIDVYLGTCFVMVFACLL 342
N+ LP VSYIK+IDV++G C +F LL
Sbjct: 258 AQSAGINSQLPPVSYIKAIDVWIGACMTFIFCALL 292
>pdb|4A97|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|B Chain B, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|C Chain C, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|D Chain D, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|E Chain E, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|F Chain F, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|G Chain G, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|H Chain H, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|I Chain I, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|J Chain J, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A98|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|B Chain B, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|C Chain C, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|D Chain D, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|E Chain E, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|F Chain F, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|G Chain G, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|H Chain H, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|I Chain I, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|J Chain J, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|2YOE|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|B Chain B, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|C Chain C, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|D Chain D, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|E Chain E, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|F Chain F, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|G Chain G, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|H Chain H, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|I Chain I, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|J Chain J, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|3ZKR|A Chain A, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|B Chain B, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|C Chain C, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|D Chain D, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|E Chain E, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|F Chain F, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|G Chain G, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|H Chain H, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|I Chain I, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|J Chain J, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
Length = 307
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 88/205 (42%), Gaps = 23/205 (11%)
Query: 12 SEDFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIK-----NIWVPDTFFVNEKQSYF 66
+ + +D Y WT R+ PG + L V + I+ +WVP F+N S
Sbjct: 20 EQTYKVDGYIVAQWTGKP---RKTPGDKPLIVENTQIERWINNGLWVPALEFINVVGS-- 74
Query: 67 HIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRY 126
T N+ + + G + + R + S M+ + FP DRQ +E+E F Y + +R+
Sbjct: 75 --PDTGNKRLMLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQFVLELEPFSYNNQQLRF 132
Query: 127 KWNEGPNSVGVSNEVSLPQFKVLGHRQKDLE---------ISLTTGNYSRLACEIQFVRS 177
+ + + NE + ++ + G + + +SR+ I VR+
Sbjct: 133 S-DIQVYTENIDNE-EIDEWWIRGKASTHISDIRYDHLSSVQPNQNEFSRITVRIDAVRN 190
Query: 178 MGYYLIQIYIPSSLIVAISWVSFWL 202
YYL +P LI+A SW FWL
Sbjct: 191 PSYYLWSFILPLGLIIAASWSVFWL 215
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 343 GNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGXXXXXXXX 402
+SR+ I VR+ YYL +P GLI+ SW FWL + R+
Sbjct: 176 NEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWL--ESFSERLQTSFTLMLTVV 233
Query: 403 XXXXXXNAALPKISYVKSIDVYLGTCFVMVFASLL 437
+ LP++ Y ID + + +FA++L
Sbjct: 234 AYAFYTSNILPRLPYTTVIDQMIIAGYGSIFAAIL 268
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 2/95 (2%)
Query: 248 GNYSRLACEIQFVRSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGXXXXXXXX 307
+SR+ I VR+ YYL +P LI+A SW FWL + R+
Sbjct: 176 NEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWLESFS--ERLQTSFTLMLTVV 233
Query: 308 XXXXXXNAALPKVSYIKSIDVYLGTCFVMVFACLL 342
+ LP++ Y ID + + +FA +L
Sbjct: 234 AYAFYTSNILPRLPYTTVIDQMIIAGYGSIFAAIL 268
>pdb|3UQ4|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|B Chain B, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|C Chain C, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|D Chain D, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|E Chain E, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|F Chain F, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|G Chain G, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|H Chain H, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|I Chain I, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|J Chain J, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
Length = 324
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 88/205 (42%), Gaps = 23/205 (11%)
Query: 12 SEDFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIK-----NIWVPDTFFVNEKQSYF 66
+ + +D Y WT R+ PG + L V + I+ +WVP F+N S
Sbjct: 32 EQTYKVDGYIVAQWTGKP---RKTPGDKPLIVENTQIERWINNGLWVPALEFINVVGS-- 86
Query: 67 HIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRY 126
T N+ + + G + + R + S M+ + FP DRQ +E+E F Y + +R+
Sbjct: 87 --PDTGNKRLMLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQFVLELEPFSYNNQQLRF 144
Query: 127 KWNEGPNSVGVSNEVSLPQFKVLGHRQKDLE---------ISLTTGNYSRLACEIQFVRS 177
+ + + NE + ++ + G + + +SR+ I VR+
Sbjct: 145 S-DIQVYTENIDNE-EIDEWWIRGKASTHISDIRYDHLSSVQPNQNEFSRITVRIDAVRN 202
Query: 178 MGYYLIQIYIPSSLIVAISWVSFWL 202
YYL +P LI+A SW FWL
Sbjct: 203 PSYYLWSFILPLGLIIAASWSVFWL 227
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 345 YSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGXXXXXXXXXX 404
+SR+ I VR+ YYL +P GLI+ SW FWL + R+
Sbjct: 190 FSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWL--ESFSERLQTSFTLMLTVVAY 247
Query: 405 XXXXNAALPKISYVKSIDVYLGTCFVMVFASLL 437
+ LP++ Y ID + + +FA++L
Sbjct: 248 ALYTSNILPRLPYTTVIDQMIIAGYGSIFAAIL 280
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Query: 250 YSRLACEIQFVRSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGXXXXXXXXXX 309
+SR+ I VR+ YYL +P LI+A SW FWL + R+
Sbjct: 190 FSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWLESFS--ERLQTSFTLMLTVVAY 247
Query: 310 XXXXNAALPKVSYIKSIDVYLGTCFVMVFACLL 342
+ LP++ Y ID + + +FA +L
Sbjct: 248 ALYTSNILPRLPYTTVIDQMIIAGYGSIFAAIL 280
>pdb|3RQU|A Chain A, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|B Chain B, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|C Chain C, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|D Chain D, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|E Chain E, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|F Chain F, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|G Chain G, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|H Chain H, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|I Chain I, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|J Chain J, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQW|A Chain A, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|B Chain B, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|C Chain C, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|D Chain D, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|E Chain E, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|F Chain F, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|G Chain G, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|H Chain H, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|I Chain I, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|J Chain J, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|2YN6|A Chain A, Pentameric Ligand-Gated Ion Channel Elic In Complex With
Barium
pdb|2YN6|B Chain B, Pentameric Ligand-Gated Ion Channel Elic In Complex With
Barium
pdb|2YN6|C Chain C, Pentameric Ligand-Gated Ion Channel Elic In Complex With
Barium
pdb|2YN6|D Chain D, Pentameric Ligand-Gated Ion Channel Elic In Complex With
Barium
pdb|2YN6|E Chain E, Pentameric Ligand-Gated Ion Channel Elic In Complex With
Barium
Length = 322
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 88/205 (42%), Gaps = 23/205 (11%)
Query: 12 SEDFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIK-----NIWVPDTFFVNEKQSYF 66
+ + +D Y WT R+ PG + L V + I+ +WVP F+N S
Sbjct: 30 EQTYKVDGYIVAQWTGKP---RKTPGDKPLIVENTQIERWINNGLWVPALEFINVVGS-- 84
Query: 67 HIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRY 126
T N+ + + G + + R + S M+ + FP DRQ +E+E F Y + +R+
Sbjct: 85 --PDTGNKRLMLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQFVLELEPFSYNNQQLRF 142
Query: 127 KWNEGPNSVGVSNEVSLPQFKVLGHRQKDLE---------ISLTTGNYSRLACEIQFVRS 177
+ + + NE + ++ + G + + +SR+ I VR+
Sbjct: 143 S-DIQVYTENIDNE-EIDEWWIRGKASTHISDIRYDHLSSVQPNQNEFSRITVRIDAVRN 200
Query: 178 MGYYLIQIYIPSSLIVAISWVSFWL 202
YYL +P LI+A SW FWL
Sbjct: 201 PSYYLWSFILPLGLIIAASWSVFWL 225
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 343 GNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGXXXXXXXX 402
+SR+ I VR+ YYL +P GLI+ SW FWL + R+
Sbjct: 186 NEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWL--ESFSERLQTSFTLMLTVV 243
Query: 403 XXXXXXNAALPKISYVKSIDVYLGTCFVMVFASLL 437
+ LP++ Y ID + + +FA++L
Sbjct: 244 AYAFYTSNILPRLPYTTVIDQMIIAGYGSIFAAIL 278
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 2/95 (2%)
Query: 248 GNYSRLACEIQFVRSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGXXXXXXXX 307
+SR+ I VR+ YYL +P LI+A SW FWL + R+
Sbjct: 186 NEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWLESFS--ERLQTSFTLMLTVV 243
Query: 308 XXXXXXNAALPKVSYIKSIDVYLGTCFVMVFACLL 342
+ LP++ Y ID + + +FA +L
Sbjct: 244 AYAFYTSNILPRLPYTTVIDQMIIAGYGSIFAAIL 278
>pdb|3UQ5|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|B Chain B, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|C Chain C, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|D Chain D, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|E Chain E, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|F Chain F, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|G Chain G, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|H Chain H, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|I Chain I, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|J Chain J, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
Length = 324
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 88/205 (42%), Gaps = 23/205 (11%)
Query: 12 SEDFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIK-----NIWVPDTFFVNEKQSYF 66
+ + +D Y WT R+ PG + L V + I+ +WVP F+N S
Sbjct: 32 EQTYKVDGYIVAQWTGKP---RKTPGDKPLIVENTQIERWINNGLWVPALEFINVVGS-- 86
Query: 67 HIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRY 126
T N+ + + G + + R + S M+ + FP DRQ +E+E F Y + +R+
Sbjct: 87 --PDTGNKRLMLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQFVLELEPFSYNNQQLRF 144
Query: 127 KWNEGPNSVGVSNEVSLPQFKVLGHRQKDLE---------ISLTTGNYSRLACEIQFVRS 177
+ + + NE + ++ + G + + +SR+ I VR+
Sbjct: 145 S-DIQVYTENIDNE-EIDEWWIRGKASTHISDIRYDHLSSVQPNQNEFSRITVRIDAVRN 202
Query: 178 MGYYLIQIYIPSSLIVAISWVSFWL 202
YYL +P LI+A SW FWL
Sbjct: 203 PSYYLWSFILPLGLIIAASWSVFWL 227
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 345 YSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGXXXXXXXXXX 404
+SR+ I VR+ YYL +P GLI+ SW FWL + R+
Sbjct: 190 FSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWL--ESFSERLQTSFTLMATVVAY 247
Query: 405 XXXXNAALPKISYVKSIDVYLGTCFVMVFASLL 437
+ LP++ Y ID + + +FA++L
Sbjct: 248 ALYTSNILPRLPYTTVIDQMIIAGYGSIFAAIL 280
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Query: 250 YSRLACEIQFVRSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGXXXXXXXXXX 309
+SR+ I VR+ YYL +P LI+A SW FWL + R+
Sbjct: 190 FSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWLESFS--ERLQTSFTLMATVVAY 247
Query: 310 XXXXNAALPKVSYIKSIDVYLGTCFVMVFACLL 342
+ LP++ Y ID + + +FA +L
Sbjct: 248 ALYTSNILPRLPYTTVIDQMIIAGYGSIFAAIL 280
>pdb|2YKS|A Chain A, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|B Chain B, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|C Chain C, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|D Chain D, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|E Chain E, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|F Chain F, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|G Chain G, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|H Chain H, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|I Chain I, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|J Chain J, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
Length = 321
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 89/208 (42%), Gaps = 30/208 (14%)
Query: 12 SEDFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIK-----NIWVPDTFFVNEKQSYF 66
+ + +D Y WT R+ PG + L V + I+ +WVP F+N S
Sbjct: 30 EQTYKVDGYIVAQWTGKP---RKTPGDKPLIVENTQIERWINNGLWVPALEFINVVGS-- 84
Query: 67 HIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRY 126
T N+ + + G + + R + S M+ + FP DRQ +E+E F Y + +R+
Sbjct: 85 --PDTGNKRLMLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQFVLELEPFSYNNQQLRF 142
Query: 127 K----WNEGPNSVGV--------SNEVSLPQFKVLGHRQKDLEISLTTGNYSRLACEIQF 174
+ E ++ + S +S ++ L Q + +SR+ I
Sbjct: 143 SDIQVYTENIDNEEIDEWWIRKASTHISDIRYDHLSSVQPN------QNEFSRITVRIDA 196
Query: 175 VRSMGYYLIQIYIPSSLIVAISWVSFWL 202
VR+ YYL +P LI+A SW FWL
Sbjct: 197 VRNPSYYLWSFILPLGLIIAASWSVFWL 224
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 343 GNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGXXXXXXXX 402
+SR+ I VR+ YYL +P GLI+ SW FWL + R+
Sbjct: 185 NEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWL--ESFSERLQTSFTLMLTVV 242
Query: 403 XXXXXXNAALPKISYVKSIDVYLGTCFVMVFASLL 437
+ LP++ Y ID + + +FA++L
Sbjct: 243 AYAAYTSNILPRLPYTTVIDQMIIAGYGSIFAAIL 277
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 2/95 (2%)
Query: 248 GNYSRLACEIQFVRSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGXXXXXXXX 307
+SR+ I VR+ YYL +P LI+A SW FWL + R+
Sbjct: 185 NEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWLESFS--ERLQTSFTLMLTVV 242
Query: 308 XXXXXXNAALPKVSYIKSIDVYLGTCFVMVFACLL 342
+ LP++ Y ID + + +FA +L
Sbjct: 243 AYAAYTSNILPRLPYTTVIDQMIIAGYGSIFAAIL 277
>pdb|3UQ7|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|B Chain B, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|C Chain C, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|D Chain D, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|E Chain E, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|F Chain F, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|G Chain G, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|H Chain H, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|I Chain I, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|J Chain J, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
Length = 324
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 88/205 (42%), Gaps = 23/205 (11%)
Query: 12 SEDFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIK-----NIWVPDTFFVNEKQSYF 66
+ + +D Y WT R+ PG + L V + I+ +WVP F+N S
Sbjct: 32 EQTYKVDGYIVAQWTGKP---RKTPGDKPLIVENTQIERWINNGLWVPALEFINVVGS-- 86
Query: 67 HIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRY 126
T N+ + + G + + R + S M+ + FP DRQ +E+E F Y + +R+
Sbjct: 87 --PDTGNKRLMLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQFVLELEPFSYNNQQLRF 144
Query: 127 KWNEGPNSVGVSNEVSLPQFKVLGHRQKDLE---------ISLTTGNYSRLACEIQFVRS 177
+ + + NE + ++ + G + + +SR+ I VR+
Sbjct: 145 S-DIQVYTENIDNE-EIDEWWIRGKASTHISDIRYDHLSSVQPNQNEFSRITVRIDAVRN 202
Query: 178 MGYYLIQIYIPSSLIVAISWVSFWL 202
YYL +P LI+A SW FWL
Sbjct: 203 PSYYLWSFILPLGLIIAASWSVFWL 227
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 345 YSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGXXXXXXXXXX 404
+SR+ I VR+ YYL +P GLI+ SW FWL + R+
Sbjct: 190 FSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWL--ESFSERLQTSFTLMSTVVAY 247
Query: 405 XXXXNAALPKISYVKSIDVYLGTCFVMVFASLL 437
+ LP++ Y ID + + +FA++L
Sbjct: 248 ALYTSNILPRLPYTTVIDQMIIAGYGSIFAAIL 280
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Query: 250 YSRLACEIQFVRSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGXXXXXXXXXX 309
+SR+ I VR+ YYL +P LI+A SW FWL + R+
Sbjct: 190 FSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWLESFS--ERLQTSFTLMSTVVAY 247
Query: 310 XXXXNAALPKVSYIKSIDVYLGTCFVMVFACLL 342
+ LP++ Y ID + + +FA +L
Sbjct: 248 ALYTSNILPRLPYTTVIDQMIIAGYGSIFAAIL 280
>pdb|2VL0|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|B Chain B, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|C Chain C, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|D Chain D, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|E Chain E, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|F Chain F, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|G Chain G, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|H Chain H, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|I Chain I, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|J Chain J, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
Length = 321
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 89/208 (42%), Gaps = 30/208 (14%)
Query: 12 SEDFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIK-----NIWVPDTFFVNEKQSYF 66
+ + +D Y WT R+ PG + L V + I+ +WVP F+N S
Sbjct: 30 EQTYKVDGYIVAQWTGKP---RKTPGDKPLIVENTQIERWINNGLWVPALEFINVVGS-- 84
Query: 67 HIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRY 126
T N+ + + G + + R + S M+ + FP DRQ +E+E F Y + +R+
Sbjct: 85 --PDTGNKRLMLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQFVLELEPFSYNNQQLRF 142
Query: 127 K----WNEGPNSVGV--------SNEVSLPQFKVLGHRQKDLEISLTTGNYSRLACEIQF 174
+ E ++ + S +S ++ L Q + +SR+ I
Sbjct: 143 SDIQVYTENIDNEEIDEWWIRKASTHISDIRYDHLSSVQPN------QNEFSRITVRIDA 196
Query: 175 VRSMGYYLIQIYIPSSLIVAISWVSFWL 202
VR+ YYL +P LI+A SW FWL
Sbjct: 197 VRNPSYYLWSFILPLGLIIAASWSVFWL 224
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 343 GNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGXXXXXXXX 402
+SR+ I VR+ YYL +P GLI+ SW FWL + R+
Sbjct: 185 NEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWL--ESFSERLQTSFTLMLTVV 242
Query: 403 XXXXXXNAALPKISYVKSIDVYLGTCFVMVFASLL 437
+ LP++ Y ID + + +FA++L
Sbjct: 243 AYAFYTSNILPRLPYTTVIDQMIIAGYGSIFAAIL 277
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 2/95 (2%)
Query: 248 GNYSRLACEIQFVRSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGXXXXXXXX 307
+SR+ I VR+ YYL +P LI+A SW FWL + R+
Sbjct: 185 NEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWLESFS--ERLQTSFTLMLTVV 242
Query: 308 XXXXXXNAALPKVSYIKSIDVYLGTCFVMVFACLL 342
+ LP++ Y ID + + +FA +L
Sbjct: 243 AYAFYTSNILPRLPYTTVIDQMIIAGYGSIFAAIL 277
>pdb|2BG9|B Chain B, Refined Structure Of The Nicotinic Acetylcholine Receptor
At 4a Resolution
Length = 370
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 7/125 (5%)
Query: 2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQR--PGVETLSVGSDFIKNIWVPDTFFV 59
L S+L L ++E+ T + WTD RL + G++ LS+ SD ++W PD +
Sbjct: 37 LTSLLILNEKNEEMTTSVFLNLAWTDYRLQWDPAAYEGIKDLSIPSD---DVWQPDIVLM 93
Query: 60 NEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGY 119
N F I N + + H+G+++ +SC + + YFP D Q C + +S+ Y
Sbjct: 94 NNNDGSFEITLHVN--VLVQHTGAVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSYTY 151
Query: 120 TMRDI 124
++
Sbjct: 152 DTSEV 156
>pdb|4AQ5|B Chain B, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ9|B Chain B, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
Length = 493
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 7/125 (5%)
Query: 2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQR--PGVETLSVGSDFIKNIWVPDTFFV 59
L S+L L ++E+ T + WTD RL + G++ LS+ SD ++W PD +
Sbjct: 61 LTSLLILNEKNEEMTTSVFLNLAWTDYRLQWDPAAYEGIKDLSIPSD---DVWQPDIVLM 117
Query: 60 NEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGY 119
N F I N + + H+G+++ +SC + + YFP D Q C + +S+ Y
Sbjct: 118 NNNDGSFEITLHVN--VLVQHTGAVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSYTY 175
Query: 120 TMRDI 124
++
Sbjct: 176 DTSEV 180
>pdb|2BG9|C Chain C, Refined Structure Of The Nicotinic Acetylcholine Receptor
At 4a Resolution
Length = 369
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 86/207 (41%), Gaps = 17/207 (8%)
Query: 2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFR--QRPGVETLSVGSDFIKNIWVPDTFFV 59
L +++ LK E T + + W D RL + + + L + + I W+PD
Sbjct: 39 LSNLISLKETDETLTTNVWMDHAWYDHRLTWNASEYSDISILRLRPELI---WIPDIVLQ 95
Query: 60 NEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGY 119
N +++A N +R +G +T +SCP+N+ YFP D Q C ++ + Y
Sbjct: 96 NNNDGQYNVAYFCNVLVR--PNGYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNY 153
Query: 120 TMRDIRYKWNEGPNSVGVSNE---VSLPQFK-VLGHRQKDLEISLTTGNYSRLACEIQFV 175
+I P + + E + P K + G + + NY + +
Sbjct: 154 NANEISMDLIIDPEAFTENGEWEIIHKPAKKNIYGDKFPN------GTNYQDVTFYLIIR 207
Query: 176 RSMGYYLIQIYIPSSLIVAISWVSFWL 202
R +Y+I P LI ++ ++F+L
Sbjct: 208 RKPLFYVINFITPCVLISFLAALAFYL 234
>pdb|4AQ5|C Chain C, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ9|C Chain C, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
Length = 522
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 7/125 (5%)
Query: 2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFR--QRPGVETLSVGSDFIKNIWVPDTFFV 59
L +++ LK E T + + W D RL + + + L + + I W+PD
Sbjct: 60 LSNLISLKETDETLTTNVWMDHAWYDHRLTWNASEYSDISILRLRPELI---WIPDIVLQ 116
Query: 60 NEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGY 119
N +++A N +R +G +T +SCP+N+ YFP D Q C ++ + Y
Sbjct: 117 NNNDGQYNVAYFCNVLVR--PNGYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNY 174
Query: 120 TMRDI 124
+I
Sbjct: 175 NANEI 179
>pdb|3TLT|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel H11'f Mutant
In A Locally-Closed Conformation (Lc1 Subtype)
pdb|3TLT|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel H11'f Mutant
In A Locally-Closed Conformation (Lc1 Subtype)
pdb|3TLT|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel H11'f Mutant
In A Locally-Closed Conformation (Lc1 Subtype)
pdb|3TLT|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel H11'f Mutant
In A Locally-Closed Conformation (Lc1 Subtype)
pdb|3TLT|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel H11'f Mutant
In A Locally-Closed Conformation (Lc1 Subtype)
Length = 321
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 85/197 (43%), Gaps = 12/197 (6%)
Query: 8 LKFRSEDFTLDFYFRQFWTDPRLAFRQ-RPGVETLSVGSDFIKNIWVPDTFFVNEKQSYF 66
L ++E F ++ + W D RLAF R GV + + IW+P+ FVN + +
Sbjct: 34 LDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEPE---AIWIPEIRFVNVENA-- 88
Query: 67 HIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRY 126
A + I + G++ R + P++ + +P D Q HI + R+I
Sbjct: 89 RDADVVD--ISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVL 146
Query: 127 KWNEGPNSVGVSNEVSLPQFKVLGHRQ--KDLEISLTTGNYSRLACEIQFVRSMGYYLIQ 184
+ VG +++V L + + K +L S+L +++ R Y+
Sbjct: 147 AVDL--EKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPN 204
Query: 185 IYIPSSLIVAISWVSFW 201
I +P I+ ISW +FW
Sbjct: 205 IILPMLFILFISWTAFW 221
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 251 SRLACEIQFVRSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGXXXXXXXXXXX 310
S+L +++ R Y+ I +P + I+ ISW +FW + A V L
Sbjct: 186 SKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW--STSYEANVTLVVSTLIAFIAFN 243
Query: 311 XXXNAALPKVSYIKSIDVYLGTCFVMVF 338
LPK Y+ Y G M++
Sbjct: 244 ILVETNLPKTPYM----TYTGAIIFMIY 267
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 6/88 (6%)
Query: 346 SRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGXXXXXXXXXXX 405
S+L +++ R Y+ I +P I+ ISW +FW + A V L
Sbjct: 186 SKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW--STSYEANVTLVVSTLIAFIAFN 243
Query: 406 XXXNAALPKISYVKSIDVYLGTCFVMVF 433
LPK Y+ Y G M++
Sbjct: 244 ILVETNLPKTPYM----TYTGAIIFMIY 267
>pdb|3EI0|A Chain A, Structure Of The E221a Mutant Of The Gloebacter Violaceus
Pentameric Ligand Gated Ion Channnel (Glic)
pdb|3EI0|B Chain B, Structure Of The E221a Mutant Of The Gloebacter Violaceus
Pentameric Ligand Gated Ion Channnel (Glic)
pdb|3EI0|C Chain C, Structure Of The E221a Mutant Of The Gloebacter Violaceus
Pentameric Ligand Gated Ion Channnel (Glic)
pdb|3EI0|D Chain D, Structure Of The E221a Mutant Of The Gloebacter Violaceus
Pentameric Ligand Gated Ion Channnel (Glic)
pdb|3EI0|E Chain E, Structure Of The E221a Mutant Of The Gloebacter Violaceus
Pentameric Ligand Gated Ion Channnel (Glic)
Length = 317
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 85/197 (43%), Gaps = 12/197 (6%)
Query: 8 LKFRSEDFTLDFYFRQFWTDPRLAFRQ-RPGVETLSVGSDFIKNIWVPDTFFVNEKQSYF 66
L ++E F ++ + W D RLAF R GV + + IW+P+ FVN + +
Sbjct: 30 LDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEPE---AIWIPEIRFVNVENA-- 84
Query: 67 HIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRY 126
A + I + G++ R + P++ + +P D Q HI + R+I
Sbjct: 85 RDADVVD--ISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVL 142
Query: 127 KWNEGPNSVGVSNEVSLPQFKVLGHRQ--KDLEISLTTGNYSRLACEIQFVRSMGYYLIQ 184
+ VG +++V L + + K +L S+L +++ R Y+
Sbjct: 143 AVDL--EKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPN 200
Query: 185 IYIPSSLIVAISWVSFW 201
I +P I+ ISW +FW
Sbjct: 201 IILPMLFILFISWTAFW 217
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 251 SRLACEIQFVRSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGXXXXXXXXXXX 310
S+L +++ R Y+ I +P + I+ ISW +FW A A V L
Sbjct: 182 SKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFWSTSYA--ANVTLVVSTLIAHIAFN 239
Query: 311 XXXNAALPKVSYIKSIDVYLGTCFVMVF 338
LPK Y+ Y G M++
Sbjct: 240 ILVETNLPKTPYM----TYTGAIIFMIY 263
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 6/88 (6%)
Query: 346 SRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGXXXXXXXXXXX 405
S+L +++ R Y+ I +P I+ ISW +FW A A V L
Sbjct: 182 SKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFWSTSYA--ANVTLVVSTLIAHIAFN 239
Query: 406 XXXNAALPKISYVKSIDVYLGTCFVMVF 433
LPK Y+ Y G M++
Sbjct: 240 ILVETNLPKTPYM----TYTGAIIFMIY 263
>pdb|2XQ9|A Chain A, Pentameric Ligand Gated Ion Channel Glic Mutant E221a In
Complex With Tetraethylarsonium (Teas)
pdb|2XQ9|B Chain B, Pentameric Ligand Gated Ion Channel Glic Mutant E221a In
Complex With Tetraethylarsonium (Teas)
pdb|2XQ9|C Chain C, Pentameric Ligand Gated Ion Channel Glic Mutant E221a In
Complex With Tetraethylarsonium (Teas)
pdb|2XQ9|D Chain D, Pentameric Ligand Gated Ion Channel Glic Mutant E221a In
Complex With Tetraethylarsonium (Teas)
pdb|2XQ9|E Chain E, Pentameric Ligand Gated Ion Channel Glic Mutant E221a In
Complex With Tetraethylarsonium (Teas)
Length = 317
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 85/197 (43%), Gaps = 12/197 (6%)
Query: 8 LKFRSEDFTLDFYFRQFWTDPRLAFRQ-RPGVETLSVGSDFIKNIWVPDTFFVNEKQSYF 66
L ++E F ++ + W D RLAF R GV + + IW+P+ FVN + +
Sbjct: 30 LDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEPE---AIWIPEIRFVNVENA-- 84
Query: 67 HIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRY 126
A + I + G++ R + P++ + +P D Q HI + R+I
Sbjct: 85 RDADVVD--ISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVL 142
Query: 127 KWNEGPNSVGVSNEVSLPQFKVLGHRQ--KDLEISLTTGNYSRLACEIQFVRSMGYYLIQ 184
+ VG +++V L + + K +L S+L +++ R Y+
Sbjct: 143 AVDL--EKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPN 200
Query: 185 IYIPSSLIVAISWVSFW 201
I +P I+ ISW +FW
Sbjct: 201 IILPMLFILFISWTAFW 217
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 251 SRLACEIQFVRSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGXXXXXXXXXXX 310
S+L +++ R Y+ I +P + I+ ISW +FW + A V L
Sbjct: 182 SKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW--STSYDANVTLVVSTLIAHIAFN 239
Query: 311 XXXNAALPKVSYIKSIDVYLGTCFVMVF 338
LPK Y+ Y G M++
Sbjct: 240 ILVETNLPKTPYM----TYTGAIIFMIY 263
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 6/88 (6%)
Query: 346 SRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGXXXXXXXXXXX 405
S+L +++ R Y+ I +P I+ ISW +FW + A V L
Sbjct: 182 SKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW--STSYDANVTLVVSTLIAHIAFN 239
Query: 406 XXXNAALPKISYVKSIDVYLGTCFVMVF 433
LPK Y+ Y G M++
Sbjct: 240 ILVETNLPKTPYM----TYTGAIIFMIY 263
>pdb|3EHZ|A Chain A, X-Ray Structure Of The Pentameric Ligand Gated Ion Channel
Of Gloebacter Violaceus (Glic) In A Presumptive Open
Conformation
pdb|3EHZ|B Chain B, X-Ray Structure Of The Pentameric Ligand Gated Ion Channel
Of Gloebacter Violaceus (Glic) In A Presumptive Open
Conformation
pdb|3EHZ|C Chain C, X-Ray Structure Of The Pentameric Ligand Gated Ion Channel
Of Gloebacter Violaceus (Glic) In A Presumptive Open
Conformation
pdb|3EHZ|D Chain D, X-Ray Structure Of The Pentameric Ligand Gated Ion Channel
Of Gloebacter Violaceus (Glic) In A Presumptive Open
Conformation
pdb|3EHZ|E Chain E, X-Ray Structure Of The Pentameric Ligand Gated Ion Channel
Of Gloebacter Violaceus (Glic) In A Presumptive Open
Conformation
pdb|2XQ3|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Br-Lidocaine
pdb|2XQ3|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Br-Lidocaine
pdb|2XQ3|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Br-Lidocaine
pdb|2XQ3|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Br-Lidocaine
pdb|2XQ3|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Br-Lidocaine
pdb|2XQ4|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetramethylarsonium (Tmas)
pdb|2XQ4|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetramethylarsonium (Tmas)
pdb|2XQ4|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetramethylarsonium (Tmas)
pdb|2XQ4|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetramethylarsonium (Tmas)
pdb|2XQ4|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetramethylarsonium (Tmas)
pdb|2XQ5|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetraethylarsonium (Teas)
pdb|2XQ5|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetraethylarsonium (Teas)
pdb|2XQ5|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetraethylarsonium (Teas)
pdb|2XQ5|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetraethylarsonium (Teas)
pdb|2XQ5|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetraethylarsonium (Teas)
pdb|2XQ6|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cesium Ion (Cs+)
pdb|2XQ6|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cesium Ion (Cs+)
pdb|2XQ6|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cesium Ion (Cs+)
pdb|2XQ6|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cesium Ion (Cs+)
pdb|2XQ6|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cesium Ion (Cs+)
pdb|2XQ7|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cadmium Ion (Cd2+)
pdb|2XQ7|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cadmium Ion (Cd2+)
pdb|2XQ7|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cadmium Ion (Cd2+)
pdb|2XQ7|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cadmium Ion (Cd2+)
pdb|2XQ7|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cadmium Ion (Cd2+)
pdb|2XQ8|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Zinc Ion (Zn2+)
pdb|2XQ8|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Zinc Ion (Zn2+)
pdb|2XQ8|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Zinc Ion (Zn2+)
pdb|2XQ8|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Zinc Ion (Zn2+)
pdb|2XQ8|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Zinc Ion (Zn2+)
pdb|2XQA|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetrabutylantimony (Tbsb)
pdb|2XQA|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetrabutylantimony (Tbsb)
pdb|2XQA|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetrabutylantimony (Tbsb)
pdb|2XQA|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetrabutylantimony (Tbsb)
pdb|2XQA|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetrabutylantimony (Tbsb)
pdb|4F8H|A Chain A, X-Ray Structure Of The Anesthetic Ketamine Bound To The
Glic Pentameric Ligand-Gated Ion Channel
pdb|4F8H|B Chain B, X-Ray Structure Of The Anesthetic Ketamine Bound To The
Glic Pentameric Ligand-Gated Ion Channel
pdb|4F8H|C Chain C, X-Ray Structure Of The Anesthetic Ketamine Bound To The
Glic Pentameric Ligand-Gated Ion Channel
pdb|4F8H|D Chain D, X-Ray Structure Of The Anesthetic Ketamine Bound To The
Glic Pentameric Ligand-Gated Ion Channel
pdb|4F8H|E Chain E, X-Ray Structure Of The Anesthetic Ketamine Bound To The
Glic Pentameric Ligand-Gated Ion Channel
Length = 317
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 85/197 (43%), Gaps = 12/197 (6%)
Query: 8 LKFRSEDFTLDFYFRQFWTDPRLAFRQ-RPGVETLSVGSDFIKNIWVPDTFFVNEKQSYF 66
L ++E F ++ + W D RLAF R GV + + IW+P+ FVN + +
Sbjct: 30 LDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEPE---AIWIPEIRFVNVENA-- 84
Query: 67 HIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRY 126
A + I + G++ R + P++ + +P D Q HI + R+I
Sbjct: 85 RDADVVD--ISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVL 142
Query: 127 KWNEGPNSVGVSNEVSLPQFKVLGHRQ--KDLEISLTTGNYSRLACEIQFVRSMGYYLIQ 184
+ VG +++V L + + K +L S+L +++ R Y+
Sbjct: 143 AVDL--EKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPN 200
Query: 185 IYIPSSLIVAISWVSFW 201
I +P I+ ISW +FW
Sbjct: 201 IILPMLFILFISWTAFW 217
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 251 SRLACEIQFVRSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGXXXXXXXXXXX 310
S+L +++ R Y+ I +P + I+ ISW +FW + A V L
Sbjct: 182 SKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW--STSYEANVTLVVSTLIAHIAFN 239
Query: 311 XXXNAALPKVSYIKSIDVYLGTCFVMVF 338
LPK Y+ Y G M++
Sbjct: 240 ILVETNLPKTPYM----TYTGAIIFMIY 263
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 6/88 (6%)
Query: 346 SRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGXXXXXXXXXXX 405
S+L +++ R Y+ I +P I+ ISW +FW + A V L
Sbjct: 182 SKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW--STSYEANVTLVVSTLIAHIAFN 239
Query: 406 XXXNAALPKISYVKSIDVYLGTCFVMVF 433
LPK Y+ Y G M++
Sbjct: 240 ILVETNLPKTPYM----TYTGAIIFMIY 263
>pdb|3TLS|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel E19'p Mutant
In A Locally-Closed Conformation (Lc2 Subtype)
pdb|3TLS|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel E19'p Mutant
In A Locally-Closed Conformation (Lc2 Subtype)
pdb|3TLS|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel E19'p Mutant
In A Locally-Closed Conformation (Lc2 Subtype)
pdb|3TLS|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel E19'p Mutant
In A Locally-Closed Conformation (Lc2 Subtype)
pdb|3TLS|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel E19'p Mutant
In A Locally-Closed Conformation (Lc2 Subtype)
Length = 321
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 85/197 (43%), Gaps = 12/197 (6%)
Query: 8 LKFRSEDFTLDFYFRQFWTDPRLAFRQ-RPGVETLSVGSDFIKNIWVPDTFFVNEKQSYF 66
L ++E F ++ + W D RLAF R GV + + IW+P+ FVN + +
Sbjct: 34 LDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEPE---AIWIPEIRFVNVENA-- 88
Query: 67 HIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRY 126
A + I + G++ R + P++ + +P D Q HI + R+I
Sbjct: 89 RDADVVD--ISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVL 146
Query: 127 KWNEGPNSVGVSNEVSLPQFKVLGHRQ--KDLEISLTTGNYSRLACEIQFVRSMGYYLIQ 184
+ VG +++V L + + K +L S+L +++ R Y+
Sbjct: 147 AVDL--EKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPN 204
Query: 185 IYIPSSLIVAISWVSFW 201
I +P I+ ISW +FW
Sbjct: 205 IILPMLFILFISWTAFW 221
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 251 SRLACEIQFVRSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGXXXXXXXXXXX 310
S+L +++ R Y+ I +P + I+ ISW +FW + A V L
Sbjct: 186 SKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW--STSYEANVTLVVSTLIAHIAFN 243
Query: 311 XXXNAALPKVSYIKSIDVYLGTCFVMVF 338
LPK Y+ Y G M++
Sbjct: 244 ILVPTNLPKTPYM----TYTGAIIFMIY 267
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 6/88 (6%)
Query: 346 SRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGXXXXXXXXXXX 405
S+L +++ R Y+ I +P I+ ISW +FW + A V L
Sbjct: 186 SKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW--STSYEANVTLVVSTLIAHIAFN 243
Query: 406 XXXNAALPKISYVKSIDVYLGTCFVMVF 433
LPK Y+ Y G M++
Sbjct: 244 ILVPTNLPKTPYM----TYTGAIIFMIY 267
>pdb|3EAM|A Chain A, An Open-Pore Structure Of A Bacterial Pentameric Ligand-
Gated Ion Channel
pdb|3EAM|B Chain B, An Open-Pore Structure Of A Bacterial Pentameric Ligand-
Gated Ion Channel
pdb|3EAM|C Chain C, An Open-Pore Structure Of A Bacterial Pentameric Ligand-
Gated Ion Channel
pdb|3EAM|D Chain D, An Open-Pore Structure Of A Bacterial Pentameric Ligand-
Gated Ion Channel
pdb|3EAM|E Chain E, An Open-Pore Structure Of A Bacterial Pentameric Ligand-
Gated Ion Channel
pdb|4HFI|A Chain A, The Glic Pentameric Ligand-gated Ion Channel At 2.4 A
Resolution
pdb|4HFI|B Chain B, The Glic Pentameric Ligand-gated Ion Channel At 2.4 A
Resolution
pdb|4HFI|C Chain C, The Glic Pentameric Ligand-gated Ion Channel At 2.4 A
Resolution
pdb|4HFI|D Chain D, The Glic Pentameric Ligand-gated Ion Channel At 2.4 A
Resolution
pdb|4HFI|E Chain E, The Glic Pentameric Ligand-gated Ion Channel At 2.4 A
Resolution
pdb|4IL4|A Chain A, The Pentameric Ligand-gated Ion Channel Glic In Complex
With Se-ddm
pdb|4IL4|B Chain B, The Pentameric Ligand-gated Ion Channel Glic In Complex
With Se-ddm
pdb|4IL4|C Chain C, The Pentameric Ligand-gated Ion Channel Glic In Complex
With Se-ddm
pdb|4IL4|D Chain D, The Pentameric Ligand-gated Ion Channel Glic In Complex
With Se-ddm
pdb|4IL4|E Chain E, The Pentameric Ligand-gated Ion Channel Glic In Complex
With Se-ddm
Length = 317
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 85/197 (43%), Gaps = 12/197 (6%)
Query: 8 LKFRSEDFTLDFYFRQFWTDPRLAFRQ-RPGVETLSVGSDFIKNIWVPDTFFVNEKQSYF 66
L ++E F ++ + W D RLAF R GV + + IW+P+ FVN + +
Sbjct: 30 LDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEPE---AIWIPEIRFVNVENA-- 84
Query: 67 HIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRY 126
A + I + G++ R + P++ + +P D Q HI + R+I
Sbjct: 85 RDADVVD--ISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVL 142
Query: 127 KWNEGPNSVGVSNEVSLPQFKVLGHRQ--KDLEISLTTGNYSRLACEIQFVRSMGYYLIQ 184
+ VG +++V L + + K +L S+L +++ R Y+
Sbjct: 143 AVDL--EKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPN 200
Query: 185 IYIPSSLIVAISWVSFW 201
I +P I+ ISW +FW
Sbjct: 201 IILPMLFILFISWTAFW 217
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 251 SRLACEIQFVRSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGXXXXXXXXXXX 310
S+L +++ R Y+ I +P + I+ ISW +FW + A V L
Sbjct: 182 SKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW--STSYEANVTLVVSTLIAHIAFN 239
Query: 311 XXXNAALPKVSYIKSIDVYLGTCFVMVF 338
LPK Y+ Y G M++
Sbjct: 240 ILVETNLPKTPYM----TYTGAIIFMIY 263
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 6/88 (6%)
Query: 346 SRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGXXXXXXXXXXX 405
S+L +++ R Y+ I +P I+ ISW +FW + A V L
Sbjct: 182 SKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW--STSYEANVTLVVSTLIAHIAFN 239
Query: 406 XXXNAALPKISYVKSIDVYLGTCFVMVF 433
LPK Y+ Y G M++
Sbjct: 240 ILVETNLPKTPYM----TYTGAIIFMIY 263
>pdb|4ILC|A Chain A, The Glic Pentameric Ligand-gated Ion Channel In Complex
With Sulfates
pdb|4ILC|B Chain B, The Glic Pentameric Ligand-gated Ion Channel In Complex
With Sulfates
pdb|4ILC|C Chain C, The Glic Pentameric Ligand-gated Ion Channel In Complex
With Sulfates
pdb|4ILC|D Chain D, The Glic Pentameric Ligand-gated Ion Channel In Complex
With Sulfates
pdb|4ILC|E Chain E, The Glic Pentameric Ligand-gated Ion Channel In Complex
With Sulfates
Length = 320
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 85/197 (43%), Gaps = 12/197 (6%)
Query: 8 LKFRSEDFTLDFYFRQFWTDPRLAFRQ-RPGVETLSVGSDFIKNIWVPDTFFVNEKQSYF 66
L ++E F ++ + W D RLAF R GV + + IW+P+ FVN + +
Sbjct: 34 LDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEPE---AIWIPEIRFVNVENA-- 88
Query: 67 HIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRY 126
A + I + G++ R + P++ + +P D Q HI + R+I
Sbjct: 89 RDADVVD--ISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVL 146
Query: 127 KWNEGPNSVGVSNEVSLPQFKVLGHRQ--KDLEISLTTGNYSRLACEIQFVRSMGYYLIQ 184
+ VG +++V L + + K +L S+L +++ R Y+
Sbjct: 147 AVDL--EKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPN 204
Query: 185 IYIPSSLIVAISWVSFW 201
I +P I+ ISW +FW
Sbjct: 205 IILPMLFILFISWTAFW 221
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 251 SRLACEIQFVRSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGXXXXXXXXXXX 310
S+L +++ R Y+ I +P + I+ ISW +FW + A V L
Sbjct: 186 SKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW--STSYEANVTLVVSTLIAHIAFN 243
Query: 311 XXXNAALPKVSYIKSIDVYLGTCFVMVF 338
LPK Y+ Y G M++
Sbjct: 244 ILVETNLPKTPYM----TYTGAIIFMIY 267
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 6/88 (6%)
Query: 346 SRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGXXXXXXXXXXX 405
S+L +++ R Y+ I +P I+ ISW +FW + A V L
Sbjct: 186 SKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW--STSYEANVTLVVSTLIAHIAFN 243
Query: 406 XXXNAALPKISYVKSIDVYLGTCFVMVF 433
LPK Y+ Y G M++
Sbjct: 244 ILVETNLPKTPYM----TYTGAIIFMIY 267
>pdb|4IL9|A Chain A, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Bromide
pdb|4IL9|B Chain B, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Bromide
pdb|4IL9|C Chain C, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Bromide
pdb|4IL9|D Chain D, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Bromide
pdb|4IL9|E Chain E, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Bromide
pdb|4ILA|A Chain A, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Cesium
pdb|4ILA|B Chain B, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Cesium
pdb|4ILA|C Chain C, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Cesium
pdb|4ILA|D Chain D, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Cesium
pdb|4ILA|E Chain E, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Cesium
pdb|4ILB|A Chain A, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Rubidium
pdb|4ILB|B Chain B, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Rubidium
pdb|4ILB|C Chain C, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Rubidium
pdb|4ILB|D Chain D, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Rubidium
pdb|4ILB|E Chain E, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Rubidium
Length = 320
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 85/197 (43%), Gaps = 12/197 (6%)
Query: 8 LKFRSEDFTLDFYFRQFWTDPRLAFRQ-RPGVETLSVGSDFIKNIWVPDTFFVNEKQSYF 66
L ++E F ++ + W D RLAF R GV + + IW+P+ FVN + +
Sbjct: 34 LDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEPE---AIWIPEIRFVNVENA-- 88
Query: 67 HIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRY 126
A + I + G++ R + P++ + +P D Q HI + R+I
Sbjct: 89 RDADVVD--ISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVL 146
Query: 127 KWNEGPNSVGVSNEVSLPQFKVLGHRQ--KDLEISLTTGNYSRLACEIQFVRSMGYYLIQ 184
+ VG +++V L + + K +L S+L +++ R Y+
Sbjct: 147 AVDL--EKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPN 204
Query: 185 IYIPSSLIVAISWVSFW 201
I +P I+ ISW +FW
Sbjct: 205 IILPMLFILFISWTAFW 221
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 251 SRLACEIQFVRSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGXXXXXXXXXXX 310
S+L +++ R Y+ I +P + I+ ISW +FW + A V L
Sbjct: 186 SKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW--STSYEANVTLVVSTLIAHIFFN 243
Query: 311 XXXNAALPKVSYIKSIDVYLGTCFVMVF 338
LPK Y+ Y G M++
Sbjct: 244 ILVETNLPKTPYM----TYTGAIIFMIY 267
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 6/88 (6%)
Query: 346 SRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGXXXXXXXXXXX 405
S+L +++ R Y+ I +P I+ ISW +FW + A V L
Sbjct: 186 SKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW--STSYEANVTLVVSTLIAHIFFN 243
Query: 406 XXXNAALPKISYVKSIDVYLGTCFVMVF 433
LPK Y+ Y G M++
Sbjct: 244 ILVETNLPKTPYM----TYTGAIIFMIY 267
>pdb|3P4W|A Chain A, Structure Of Desflurane Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P4W|B Chain B, Structure Of Desflurane Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P4W|C Chain C, Structure Of Desflurane Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P4W|D Chain D, Structure Of Desflurane Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P4W|E Chain E, Structure Of Desflurane Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P50|A Chain A, Structure Of Propofol Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P50|B Chain B, Structure Of Propofol Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P50|C Chain C, Structure Of Propofol Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P50|D Chain D, Structure Of Propofol Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P50|E Chain E, Structure Of Propofol Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
Length = 318
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 85/197 (43%), Gaps = 12/197 (6%)
Query: 8 LKFRSEDFTLDFYFRQFWTDPRLAFRQ-RPGVETLSVGSDFIKNIWVPDTFFVNEKQSYF 66
L ++E F ++ + W D RLAF R GV + + IW+P+ FVN + +
Sbjct: 30 LDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEPE---AIWIPEIRFVNVENA-- 84
Query: 67 HIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRY 126
A + I + G++ R + P++ + +P D Q HI + R+I
Sbjct: 85 RDADVVD--ISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVL 142
Query: 127 KWNEGPNSVGVSNEVSLPQFKVLGHRQ--KDLEISLTTGNYSRLACEIQFVRSMGYYLIQ 184
+ VG +++V L + + K +L S+L +++ R Y+
Sbjct: 143 AVDL--EKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPN 200
Query: 185 IYIPSSLIVAISWVSFW 201
I +P I+ ISW +FW
Sbjct: 201 IILPMLFILFISWTAFW 217
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 251 SRLACEIQFVRSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGXXXXXXXXXXX 310
S+L +++ R Y+ I +P + I+ ISW +FW + A V L
Sbjct: 182 SKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW--STSYEANVTLVVSTLIAHIAFN 239
Query: 311 XXXNAALPKVSYIKSIDVYLGTCFVMVF 338
LPK Y+ Y G M++
Sbjct: 240 ILVETNLPKTPYM----TYTGAIIFMIY 263
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 6/88 (6%)
Query: 346 SRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGXXXXXXXXXXX 405
S+L +++ R Y+ I +P I+ ISW +FW + A V L
Sbjct: 182 SKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW--STSYEANVTLVVSTLIAHIAFN 239
Query: 406 XXXNAALPKISYVKSIDVYLGTCFVMVF 433
LPK Y+ Y G M++
Sbjct: 240 ILVETNLPKTPYM----TYTGAIIFMIY 263
>pdb|3LSV|A Chain A, Structure Of The A237f Mutant Of The Pentameric Ligand
Gated Channel From Gloeobacter Violaceus
pdb|3LSV|B Chain B, Structure Of The A237f Mutant Of The Pentameric Ligand
Gated Channel From Gloeobacter Violaceus
pdb|3LSV|C Chain C, Structure Of The A237f Mutant Of The Pentameric Ligand
Gated Channel From Gloeobacter Violaceus
pdb|3LSV|D Chain D, Structure Of The A237f Mutant Of The Pentameric Ligand
Gated Channel From Gloeobacter Violaceus
pdb|3LSV|E Chain E, Structure Of The A237f Mutant Of The Pentameric Ligand
Gated Channel From Gloeobacter Violaceus
Length = 317
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 85/197 (43%), Gaps = 12/197 (6%)
Query: 8 LKFRSEDFTLDFYFRQFWTDPRLAFRQ-RPGVETLSVGSDFIKNIWVPDTFFVNEKQSYF 66
L ++E F ++ + W D RLAF R GV + + IW+P+ FVN + +
Sbjct: 30 LDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEPE---AIWIPEIRFVNVENA-- 84
Query: 67 HIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRY 126
A + I + G++ R + P++ + +P D Q HI + R+I
Sbjct: 85 RDADVVD--ISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVL 142
Query: 127 KWNEGPNSVGVSNEVSLPQFKVLGHRQ--KDLEISLTTGNYSRLACEIQFVRSMGYYLIQ 184
+ VG +++V L + + K +L S+L +++ R Y+
Sbjct: 143 AVDL--EKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPN 200
Query: 185 IYIPSSLIVAISWVSFW 201
I +P I+ ISW +FW
Sbjct: 201 IILPMLFILFISWTAFW 217
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 251 SRLACEIQFVRSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGXXXXXXXXXXX 310
S+L +++ R Y+ I +P + I+ ISW +FW + A V L
Sbjct: 182 SKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW--STSYEANVTLVVSTLIAHIFFN 239
Query: 311 XXXNAALPKVSYIKSIDVYLGTCFVMVF 338
LPK Y+ Y G M++
Sbjct: 240 ILVETNLPKTPYM----TYTGAIIFMIY 263
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 6/88 (6%)
Query: 346 SRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGXXXXXXXXXXX 405
S+L +++ R Y+ I +P I+ ISW +FW + A V L
Sbjct: 182 SKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW--STSYEANVTLVVSTLIAHIFFN 239
Query: 406 XXXNAALPKISYVKSIDVYLGTCFVMVF 433
LPK Y+ Y G M++
Sbjct: 240 ILVETNLPKTPYM----TYTGAIIFMIY 263
>pdb|3UU3|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3UU3|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3UU3|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3UU3|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3UU3|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3UU5|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Mutant Reduced In Solution
pdb|3UU5|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Mutant Reduced In Solution
pdb|3UU5|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Mutant Reduced In Solution
pdb|3UU5|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Mutant Reduced In Solution
pdb|3UU5|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Mutant Reduced In Solution
Length = 321
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 83/193 (43%), Gaps = 12/193 (6%)
Query: 12 SEDFTLDFYFRQFWTDPRLAFRQ-RPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIAT 70
+E F ++ + W D RLAF R GV + + IW+P+ FVN + + A
Sbjct: 38 AETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEPE---AIWIPEIRFVNVENA--RDAD 92
Query: 71 TSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNE 130
+ I + G++ R + P++ + +P D Q HI + R+I +
Sbjct: 93 VVD--ISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVLAVDL 150
Query: 131 GPNSVGVSNEVSLPQFKVLGHRQ--KDLEISLTTGNYSRLACEIQFVRSMGYYLIQIYIP 188
VG +++V L + + K +L S+L +++ R Y+ I +P
Sbjct: 151 --EKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPNIILP 208
Query: 189 SSLIVAISWVSFW 201
I+ ISW +FW
Sbjct: 209 MLFILFISWTAFW 221
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 251 SRLACEIQFVRSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGXXXXXXXXXXX 310
S+L +++ R Y+ I +P + I+ ISW +FW + A V L
Sbjct: 186 SKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW--STSYEANVTLVVSTLIAHIAFN 243
Query: 311 XXXNAALPKVSYIKSIDVYLGTCFVMVF 338
LPK Y+ Y G M++
Sbjct: 244 ILVECNLPKTPYM----TYTGAIIFMIY 267
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 6/88 (6%)
Query: 346 SRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGXXXXXXXXXXX 405
S+L +++ R Y+ I +P I+ ISW +FW + A V L
Sbjct: 186 SKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW--STSYEANVTLVVSTLIAHIAFN 243
Query: 406 XXXNAALPKISYVKSIDVYLGTCFVMVF 433
LPK Y+ Y G M++
Sbjct: 244 ILVECNLPKTPYM----TYTGAIIFMIY 267
>pdb|3TLW|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Oxidized Mutant In A Locally-Closed Conformation (Lc2
Subtype)
pdb|3TLW|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Oxidized Mutant In A Locally-Closed Conformation (Lc2
Subtype)
pdb|3TLW|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Oxidized Mutant In A Locally-Closed Conformation (Lc2
Subtype)
pdb|3TLW|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Oxidized Mutant In A Locally-Closed Conformation (Lc2
Subtype)
pdb|3TLW|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Oxidized Mutant In A Locally-Closed Conformation (Lc2
Subtype)
pdb|3UU4|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In The Crystal In A Locally-Closed
Conformation (Lc1 Subtype)
pdb|3UU4|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In The Crystal In A Locally-Closed
Conformation (Lc1 Subtype)
pdb|3UU4|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In The Crystal In A Locally-Closed
Conformation (Lc1 Subtype)
pdb|3UU4|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In The Crystal In A Locally-Closed
Conformation (Lc1 Subtype)
pdb|3UU4|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In The Crystal In A Locally-Closed
Conformation (Lc1 Subtype)
pdb|3UUB|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|F Chain F, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|G Chain G, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|H Chain H, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|I Chain I, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|J Chain J, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
Length = 321
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 83/193 (43%), Gaps = 12/193 (6%)
Query: 12 SEDFTLDFYFRQFWTDPRLAFRQ-RPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIAT 70
+E F ++ + W D RLAF R GV + + IW+P+ FVN + + A
Sbjct: 38 AETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEPE---AIWIPEIRFVNVENA--RDAD 92
Query: 71 TSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNE 130
+ I + G++ R + P++ + +P D Q HI + R+I +
Sbjct: 93 VVD--ISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVLAVDL 150
Query: 131 GPNSVGVSNEVSLPQFKVLGHRQ--KDLEISLTTGNYSRLACEIQFVRSMGYYLIQIYIP 188
VG +++V L + + K +L S+L +++ R Y+ I +P
Sbjct: 151 --EKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPNIILP 208
Query: 189 SSLIVAISWVSFW 201
I+ ISW +FW
Sbjct: 209 MLFILFISWTAFW 221
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 251 SRLACEIQFVRSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGXXXXXXXXXXX 310
S+L +++ R Y+ I +P + I+ ISW +FW + A V L
Sbjct: 186 SKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW--STSYEANVTLVVSTLIAHIAFN 243
Query: 311 XXXNAALPKVSYIKSIDVYLGTCFVMVF 338
LPK Y+ Y G M++
Sbjct: 244 ILVETCLPKTPYM----TYTGAIIFMIY 267
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 6/88 (6%)
Query: 346 SRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGXXXXXXXXXXX 405
S+L +++ R Y+ I +P I+ ISW +FW + A V L
Sbjct: 186 SKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW--STSYEANVTLVVSTLIAHIAFN 243
Query: 406 XXXNAALPKISYVKSIDVYLGTCFVMVF 433
LPK Y+ Y G M++
Sbjct: 244 ILVETCLPKTPYM----TYTGAIIFMIY 267
>pdb|3TLU|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3TLU|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3TLU|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3TLU|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3TLU|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3UU8|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Mutant Reduced In Solution
pdb|3UU8|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Mutant Reduced In Solution
pdb|3UU8|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Mutant Reduced In Solution
pdb|3UU8|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Mutant Reduced In Solution
pdb|3UU8|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Mutant Reduced In Solution
Length = 321
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 83/193 (43%), Gaps = 12/193 (6%)
Query: 12 SEDFTLDFYFRQFWTDPRLAFRQ-RPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIAT 70
+E F ++ + W D RLAF R GV + + IW+P+ FVN + + A
Sbjct: 38 AETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEPE---AIWIPEIRFVNVENA--RDAD 92
Query: 71 TSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNE 130
+ I + G++ R + P++ + +P D Q HI + R+I +
Sbjct: 93 VVD--ISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVLAVDL 150
Query: 131 GPNSVGVSNEVSLPQFKVLGHRQ--KDLEISLTTGNYSRLACEIQFVRSMGYYLIQIYIP 188
VG +++V L + + K +L S+L +++ R Y+ I +P
Sbjct: 151 --EKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPNIILP 208
Query: 189 SSLIVAISWVSFW 201
I+ ISW +FW
Sbjct: 209 MLFILFISWTAFW 221
>pdb|3TLV|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Oxidized Mutant In A Locally-Closed Conformation (Lc3
Subtype)
pdb|3TLV|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Oxidized Mutant In A Locally-Closed Conformation (Lc3
Subtype)
pdb|3TLV|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Oxidized Mutant In A Locally-Closed Conformation (Lc3
Subtype)
pdb|3TLV|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Oxidized Mutant In A Locally-Closed Conformation (Lc3
Subtype)
pdb|3TLV|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Oxidized Mutant In A Locally-Closed Conformation (Lc3
Subtype)
pdb|3UU6|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Mutant Reduced In Solution
pdb|3UU6|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Mutant Reduced In Solution
pdb|3UU6|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Mutant Reduced In Solution
pdb|3UU6|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Mutant Reduced In Solution
pdb|3UU6|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Mutant Reduced In Solution
Length = 321
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 83/193 (43%), Gaps = 12/193 (6%)
Query: 12 SEDFTLDFYFRQFWTDPRLAFRQ-RPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIAT 70
+E F ++ + W D RLAF R GV + + IW+P+ FVN + + A
Sbjct: 38 AETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEPE---AIWIPEIRFVNVENA--RDAD 92
Query: 71 TSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNE 130
+ I + G++ R + P++ + +P D Q HI + R+I +
Sbjct: 93 VVD--ISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVLAVDL 150
Query: 131 GPNSVGVSNEVSLPQFKVLGHRQ--KDLEISLTTGNYSRLACEIQFVRSMGYYLIQIYIP 188
VG +++V L + + K +L S+L +++ R Y+ I +P
Sbjct: 151 --EKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPNIILP 208
Query: 189 SSLIVAISWVSFW 201
I+ ISW +FW
Sbjct: 209 MLFILFISWTAFW 221
>pdb|2BG9|E Chain E, Refined Structure Of The Nicotinic Acetylcholine Receptor
At 4a Resolution
Length = 370
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 60/128 (46%), Gaps = 7/128 (5%)
Query: 2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFR--QRPGVETLSVGSDFIKNIWVPDTFFV 59
L +++ L + E T + + W D RL++ + G++ + + S+ + W+PD
Sbjct: 36 LTNLISLNEKEEALTTNVWIEIQWNDYRLSWNTSEYEGIDLVRIPSELL---WLPDVVLE 92
Query: 60 NEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGY 119
N F +A +N + +++ GS+ ++CP+ + YFP D Q C + S Y
Sbjct: 93 NNVDGQFEVAYYAN--VLVYNDGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQTY 150
Query: 120 TMRDIRYK 127
++ +
Sbjct: 151 NAHEVNLQ 158
>pdb|1VRY|A Chain A, Second And Third Transmembrane Domains Of The Alpha-1
Subunit Of Human Glycine Receptor
Length = 76
Score = 48.5 bits (114), Expect = 6e-06, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 30/50 (60%)
Query: 388 PARVALGXXXXXXXXXXXXXXNAALPKISYVKSIDVYLGTCFVMVFASLL 437
PARV LG A+LPK+SYVK+ID++L C + VF++LL
Sbjct: 2 PARVGLGITTVLTLTTQSSGSRASLPKVSYVKAIDIWLAVCLLFVFSALL 51
Score = 45.1 bits (105), Expect = 9e-05, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 294 ARVNLGXXXXXXXXXXXXXXNAALPKVSYIKSIDVYLGTCFVMVFACLL 342
ARV LG A+LPKVSY+K+ID++L C + VF+ LL
Sbjct: 3 ARVGLGITTVLTLTTQSSGSRASLPKVSYVKAIDIWLAVCLLFVFSALL 51
>pdb|4AQ5|E Chain E, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ9|E Chain E, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
Length = 488
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 60/128 (46%), Gaps = 7/128 (5%)
Query: 2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFR--QRPGVETLSVGSDFIKNIWVPDTFFV 59
L +++ L + E T + + W D RL++ + G++ + + S+ + W+PD
Sbjct: 36 LTNLISLNEKEEALTTNVWIEIQWNDYRLSWNTSEYEGIDLVRIPSELL---WLPDVVLE 92
Query: 60 NEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGY 119
N F +A +N + +++ GS+ ++CP+ + YFP D Q C + S Y
Sbjct: 93 NNVDGQFEVAYYAN--VLVYNDGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQTY 150
Query: 120 TMRDIRYK 127
++ +
Sbjct: 151 NAHEVNLQ 158
>pdb|4AQ5|A Chain A, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ5|D Chain D, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ9|A Chain A, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
pdb|4AQ9|D Chain D, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
Length = 461
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 11/103 (10%)
Query: 21 FRQFWTDPRLAFRQRP----GVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFI 76
RQ W D RL R P G++ + + SD ++W+PD N F I + +
Sbjct: 80 LRQQWIDVRL--RWNPADYGGIKKIRLPSD---DVWLPDLVLYNNADGDFAIVHMTK--L 132
Query: 77 RIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGY 119
+ ++G I + + C + + +FP D+Q C +++ + Y
Sbjct: 133 LLDYTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTY 175
>pdb|2BG9|A Chain A, Refined Structure Of The Nicotinic Acetylcholine Receptor
At 4a Resolution.
pdb|2BG9|D Chain D, Refined Structure Of The Nicotinic Acetylcholine Receptor
At 4a Resolution
Length = 370
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 11/103 (10%)
Query: 21 FRQFWTDPRLAFRQRP----GVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFI 76
RQ W D RL R P G++ + + SD ++W+PD N F I + +
Sbjct: 56 LRQQWIDVRL--RWNPADYGGIKKIRLPSD---DVWLPDLVLYNNADGDFAIVHMTK--L 108
Query: 77 RIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGY 119
+ ++G I + + C + + +FP D+Q C +++ + Y
Sbjct: 109 LLDYTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTY 151
>pdb|2QC1|B Chain B, Crystal Structure Of The Extracellular Domain Of The
Nicotinic Acetylcholine Receptor 1 Subunit Bound To
Alpha-Bungarotoxin At 1.9 A Resolution
Length = 212
Score = 35.0 bits (79), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 7/106 (6%)
Query: 16 TLDFYFRQFWTDPRLAFRQRP--GVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSN 73
T + +Q W D L + GV+ + + S+ IW PD N F I +
Sbjct: 52 TTNVRLKQQWVDYNLKWNPDDYGGVKKIHIPSE---KIWRPDVVLYNNADGDFAIVKFTK 108
Query: 74 EFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGY 119
+ + ++G IT + + C + + +FP D Q C +++ + Y
Sbjct: 109 --VLLDYTGHITWTPPAIFKSYCEIIVTHFPFDEQNCSMKLGTRTY 152
>pdb|3IGQ|A Chain A, Crystal Structure Of The Extracellular Domain Of A
Bacterial Pentameric Ligand-Gated Ion Channel
pdb|3IGQ|B Chain B, Crystal Structure Of The Extracellular Domain Of A
Bacterial Pentameric Ligand-Gated Ion Channel
pdb|3IGQ|C Chain C, Crystal Structure Of The Extracellular Domain Of A
Bacterial Pentameric Ligand-Gated Ion Channel
pdb|3IGQ|D Chain D, Crystal Structure Of The Extracellular Domain Of A
Bacterial Pentameric Ligand-Gated Ion Channel
pdb|3IGQ|E Chain E, Crystal Structure Of The Extracellular Domain Of A
Bacterial Pentameric Ligand-Gated Ion Channel
pdb|3IGQ|F Chain F, Crystal Structure Of The Extracellular Domain Of A
Bacterial Pentameric Ligand-Gated Ion Channel
Length = 201
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 8/106 (7%)
Query: 8 LKFRSEDFTLDFYFRQFWTDPRLAFRQ-RPGVETLSVGSDFIKNIWVPDTFFVNEKQSYF 66
L ++E F ++ + W D RLAF R GV + + IW+P+ FVN + +
Sbjct: 30 LDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEP---EAIWIPEIRFVNVENARD 86
Query: 67 HIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHI 112
I + G++ R + P++ + D Q HI
Sbjct: 87 ADVVD----ISVSPDGTVQYLERFSARVLSPLDGRRTESDSQTLHI 128
>pdb|3CGH|A Chain A, Crystal Structure Of A Susd Homolog (Bt_3984) From
Bacteroides Thetaiotaomicron Vpi-5482 At 1.70 A
Resolution
Length = 516
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 131 GPNSVGVSNEVSLPQFKVLGHRQKDLEISLTTGNYSRLACEIQFVRSMG 179
G + VG + +P+ K GH+ + I+ T+ Y A E+ F+R+ G
Sbjct: 303 GQDYVGXRRGIVIPELKTTGHKYSGVNIAPTSPLYWXNAAEVAFLRAEG 351
>pdb|1D8W|A Chain A, L-Rhamnose Isomerase
pdb|1D8W|B Chain B, L-Rhamnose Isomerase
pdb|1D8W|C Chain C, L-Rhamnose Isomerase
pdb|1D8W|D Chain D, L-Rhamnose Isomerase
Length = 426
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 12 SEDFTL---DFYFRQFWTDPRLAFRQRPGVETLSVGSDFIKNIWVPD 55
++ FTL D RQFW D A R+ +G+ + NIW+PD
Sbjct: 149 ADGFTLSHADDSIRQFWIDHCKASRRVSAYFGEQLGTPSVXNIWIPD 195
>pdb|1DE5|A Chain A, L-Rhamnose Isomerase
pdb|1DE5|B Chain B, L-Rhamnose Isomerase
pdb|1DE5|C Chain C, L-Rhamnose Isomerase
pdb|1DE5|D Chain D, L-Rhamnose Isomerase
pdb|1DE6|A Chain A, L-Rhamnose Isomerase
pdb|1DE6|B Chain B, L-Rhamnose Isomerase
pdb|1DE6|C Chain C, L-Rhamnose Isomerase
pdb|1DE6|D Chain D, L-Rhamnose Isomerase
Length = 426
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 12 SEDFTL---DFYFRQFWTDPRLAFRQRPGVETLSVGSDFIKNIWVPD 55
++ FTL D RQFW D A R+ +G+ + NIW+PD
Sbjct: 149 ADGFTLSHADDSIRQFWIDHCKASRRVSAYFGEQLGTPSVMNIWIPD 195
>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus
Eryingii
Length = 566
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 37 GVETL----SVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEF 75
G++T+ SVG + ++ +P FFVN Q++ +I S+EF
Sbjct: 296 GIDTIVNNPSVGRNLSDHLLLPAAFFVNSNQTFDNIFRDSSEF 338
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.140 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,043,266
Number of Sequences: 62578
Number of extensions: 382096
Number of successful extensions: 953
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 829
Number of HSP's gapped (non-prelim): 88
length of query: 439
length of database: 14,973,337
effective HSP length: 102
effective length of query: 337
effective length of database: 8,590,381
effective search space: 2894958397
effective search space used: 2894958397
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (25.0 bits)