Query psy7487
Match_columns 439
No_of_seqs 329 out of 1732
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 19:34:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7487.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7487hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3643|consensus 100.0 5.3E-68 1.1E-72 504.9 9.6 265 2-352 67-333 (459)
2 KOG3644|consensus 100.0 4.5E-60 9.7E-65 470.9 8.9 257 2-439 74-332 (457)
3 KOG3642|consensus 100.0 1.7E-56 3.6E-61 429.0 16.2 254 2-439 76-331 (466)
4 TIGR00860 LIC Cation transport 100.0 1.6E-51 3.5E-56 418.3 23.8 254 2-259 63-331 (459)
5 KOG3646|consensus 100.0 6E-48 1.3E-52 369.2 12.6 252 2-259 60-326 (486)
6 KOG3645|consensus 100.0 1.8E-45 3.8E-50 372.8 22.8 253 2-259 63-331 (449)
7 PF02931 Neur_chan_LBD: Neurot 100.0 6.8E-32 1.5E-36 249.7 18.7 173 2-178 34-217 (217)
8 KOG3643|consensus 100.0 1.7E-34 3.6E-39 275.9 -2.2 123 311-439 201-323 (459)
9 KOG3644|consensus 99.6 7.5E-18 1.6E-22 168.7 -13.2 175 76-350 164-340 (457)
10 KOG3642|consensus 99.5 3.4E-16 7.4E-21 151.7 -1.8 90 260-349 247-338 (466)
11 TIGR00860 LIC Cation transport 99.5 1.7E-16 3.7E-21 162.0 -8.3 98 341-438 223-320 (459)
12 PF02932 Neur_chan_memb: Neuro 99.4 4.9E-17 1.1E-21 149.1 -19.8 75 365-439 1-75 (237)
13 PF02932 Neur_chan_memb: Neuro 98.9 1.3E-10 2.7E-15 106.3 -2.8 65 185-249 1-75 (237)
14 KOG3645|consensus 96.8 1.7E-05 3.7E-10 81.1 -9.1 95 343-437 224-319 (449)
15 KOG3646|consensus 85.0 0.0072 1.6E-07 59.9 -10.9 84 345-429 222-306 (486)
16 PF14494 DUF4436: Domain of un 72.0 3.4 7.4E-05 38.9 2.9 74 97-184 96-170 (256)
17 KOG0660|consensus 40.6 8.9 0.00019 37.5 -0.1 19 412-430 200-218 (359)
18 KOG0666|consensus 40.5 7.8 0.00017 37.5 -0.5 18 412-429 212-229 (438)
19 KOG0658|consensus 30.7 22 0.00047 35.0 0.8 18 413-430 199-216 (364)
20 KOG0615|consensus 21.1 31 0.00067 34.7 -0.1 21 415-435 356-376 (475)
No 1
>KOG3643|consensus
Probab=100.00 E-value=5.3e-68 Score=504.90 Aligned_cols=265 Identities=51% Similarity=0.938 Sum_probs=246.8
Q ss_pred ccccccccccceeEEEEEEEEeEEeCcccccCCCCCeeEEEeCCcccCCccccceEEeeccccceeeeeccceeEEEeec
Q psy7487 2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIHHS 81 (439)
Q Consensus 2 l~~i~~vde~~~~~t~~~~l~~~W~D~RL~w~~~~~i~~i~l~~~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~v~i~~~ 81 (439)
+.||.+|+|++|+||++++++|.|+||||+|+ .++++++.++.++.++||.||.+|.|+|++.+|+.+.+|.++|+++|
T Consensus 67 VaSI~~vSEV~MDyTlt~y~rq~W~D~RLay~-~~~~~slTl~~~~~~~LWvPDTff~N~KkSf~H~~T~~N~~lRl~~d 145 (459)
T KOG3643|consen 67 VASIDAVSEVNMDYTLTMYLRQTWRDPRLAYS-SKNIDSLTLDVRYVDKLWVPDTFFPNSKKSFFHDVTTHNSLLRLHPD 145 (459)
T ss_pred EeeechhccccchhhhhhhhhhhhcCcccccC-CCCCceEEEchhhhhccccCceecccCcccccceeeecceEEEEcCC
Confidence 67999999999999999999999999999999 45678999999999999999999999999999999999999999999
Q ss_pred ceEEEeeeceeEEeeceeeccCCcceeeeeeEEeccccccceEEEEecCCCCceeecCccccCceEEeeeEEeeeEeecC
Q psy7487 82 GSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLEISLT 161 (439)
Q Consensus 82 G~V~~~~r~~~~~~C~~dl~~fPfD~Q~C~l~~~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~~~~ 161 (439)
|+|.|+.|++.++.|+|||++||+|+|+|+++++||+|+.+|+.+.|..+++++...++.++|||.+.+.........+.
T Consensus 146 GtVlys~RlT~Ta~C~MDL~~fPmD~Q~C~LeiESYGYt~~DI~y~W~~g~~av~~~e~i~LpqFti~~~~~~s~~~~~s 225 (459)
T KOG3643|consen 146 GTVLYSIRLTVTAACPMDLKLFPMDSQNCKLEIESYGYTTDDIEYYWSKGDNAVKGDEKIELPQFTITEYHVTSRLVSFS 225 (459)
T ss_pred CeEEEEEEEEEEEecccccccCCCcccceeEEEEecccccccEEEEEcCCCccccceeeeeccceEEEEEEEEEEEEEEc
Confidence 99999999999999999999999999999999999999999999999998888988889999999999999999999999
Q ss_pred CCceeeEEEEEEEEeeeeEEEEeeehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhhhhhhhhhhhhhHHHH
Q psy7487 162 TGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVLSFSIDVYLGTCFVM 241 (439)
Q Consensus 162 ~~~~s~l~~~~~l~R~~~~y~~~i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~~~~~i~~~~~~~~~~ 241 (439)
+|+|+++.++|.++|+.+||++|+|+|+.+++++||++||++.++.++|+++|
T Consensus 226 TG~Y~RL~l~F~l~Rnigf~ilQ~y~PS~LiVilSWVSFWin~~a~pARv~lG--------------------------- 278 (459)
T KOG3643|consen 226 TGNYSRLSLSFQLRRNIGFYILQTYIPSTLIVILSWVSFWINRDASPARVALG--------------------------- 278 (459)
T ss_pred cccceeEEEEEEEEeeccEEEEeeecchhhhhHHhHhHhhhccccchhheeec---------------------------
Confidence 99999999999999999999999999999998888888888777655555555
Q ss_pred HHHHHhhhhccceeeEEEEeecceeEEEEeeceEEEEEeeeeeeeccccccceeeecceeeEEEEEEeeccccccCCCee
Q psy7487 242 VFASLLGNYSRLACEIQFVRSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMTTLMSSTNAALPKVS 321 (439)
Q Consensus 242 v~~slle~~~~l~~~~~~~~~~~~~l~~~~~~~~~~v~~s~~~f~l~~~~~~~r~~l~~~~~lt~~~~~~~~~~~LP~~~ 321 (439)
+|++|||++++.+.+.+||+++
T Consensus 279 ----------------------------------------------------------ITTVLTMTTl~t~~n~slPrvS 300 (459)
T KOG3643|consen 279 ----------------------------------------------------------ITTVLTMTTLMTSTNESLPRVS 300 (459)
T ss_pred ----------------------------------------------------------eehHHhHHHHHhhhhccCCCcc
Confidence 4888888888899999999999
Q ss_pred EeeeeeEEEeeeeEEeeeecccc--cccchhhH
Q psy7487 322 YIKSIDVYLGTCFVMVFACLLGN--YSRLACEI 352 (439)
Q Consensus 322 y~~~~d~~~~~c~~~~~~~l~~~--~s~l~~~~ 352 (439)
|+|++|+|++.||.|+|++++|+ ++++....
T Consensus 301 YVKAiDiYL~vCFvfVF~sLLEYA~V~Y~~~~~ 333 (459)
T KOG3643|consen 301 YVKAIDVYLGVCFVFVFLSLLEYAAVNYMFKRR 333 (459)
T ss_pred ceeeehhhhhHHHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999 66665544
No 2
>KOG3644|consensus
Probab=100.00 E-value=4.5e-60 Score=470.91 Aligned_cols=257 Identities=42% Similarity=0.795 Sum_probs=226.4
Q ss_pred ccccccccccceeEEEEEEEEeEEeCcccccC-CC-CCeeEEEeCCcccCCccccceEEeeccccceeeeeccceeEEEe
Q psy7487 2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFR-QR-PGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIH 79 (439)
Q Consensus 2 l~~i~~vde~~~~~t~~~~l~~~W~D~RL~w~-~~-~~i~~i~l~~~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~v~i~ 79 (439)
+++|.+++|.+|+|++|++++|+|.||||+++ .. +........-...++||.||++|.|++.+.+|..+.+|..+.|+
T Consensus 74 vq~i~~ise~~mdf~~di~~~~~W~DpRL~~~~~~~~~~~~~~~~l~~~~~iW~Pd~~F~NsK~a~~H~~~~~N~ll~I~ 153 (457)
T KOG3644|consen 74 VQSISSISEITMDFEVDIYFRERWQDPRLAYNALKFDHILPCKLNLSLKQKIWTPDTFFANSKSAEFHKSTKPNVLLMIF 153 (457)
T ss_pred EEeecceecccceEEeeeeeeeeEeCccccccccCcccccccccccccCCceecCceeeecccceeeecCCCCceEEEEe
Confidence 67899999999999999999999999999988 32 21111111111113699999999999999999999999999999
Q ss_pred ecceEEEeeeceeEEeeceeeccCCcceeeeeeEEeccccccceEEEEecCCCCceeecCccccCceEEeeeEEeeeEee
Q psy7487 80 HSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLEIS 159 (439)
Q Consensus 80 ~~G~V~~~~r~~~~~~C~~dl~~fPfD~Q~C~l~~~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~~ 159 (439)
+||+|.++.|++++.+|+|||++||+|+|+|.+.++||+|+.+|++++|.+.+ ++..+++..+||+++.+.+..++..
T Consensus 154 pnGtV~~~~Ri~l~~~C~m~L~~fP~D~Q~C~l~~eSy~Yn~~~v~~~W~~~~-pv~~~~~i~LPdf~l~~~~~~~~~~- 231 (457)
T KOG3644|consen 154 PNGTVWYSYRISLTLPCNMDLSKFPMDSQECKLQLESYAYNTDDVRLEWKEWN-PVQVKKDIKLPDFSLPSFSTEKCTG- 231 (457)
T ss_pred cCCeEEEEEEEEEeeceeeehhhCCCccceeeEEEEEeccccceEEEEecCCC-CcccccCccCCceeccceeeccccc-
Confidence 99999999999999999999999999999999999999999999999999864 8888888889998886643321110
Q ss_pred cCCCceeeEEEEEEEEeeeeEEEEeeehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhhhhhhhhhhhhhHH
Q psy7487 160 LTTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVLSFSIDVYLGTCF 239 (439)
Q Consensus 160 ~~~~~~s~l~~~~~l~R~~~~y~~~i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~~~~~i~~~~~~~~ 239 (439)
T Consensus 232 -------------------------------------------------------------------------------- 231 (457)
T KOG3644|consen 232 -------------------------------------------------------------------------------- 231 (457)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhhhccceeeEEEEeecceeEEEEeeceEEEEEeeeeeeeccccccceeeecceeeEEEEEEeeccccccCCC
Q psy7487 240 VMVFASLLGNYSRLACEIQFVRSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMTTLMSSTNAALPK 319 (439)
Q Consensus 240 ~~v~~slle~~~~l~~~~~~~~~~~~~l~~~~~~~~~~v~~s~~~f~l~~~~~~~r~~l~~~~~lt~~~~~~~~~~~LP~ 319 (439)
T Consensus 232 -------------------------------------------------------------------------------- 231 (457)
T KOG3644|consen 232 -------------------------------------------------------------------------------- 231 (457)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEeeeeeEEEeeeeEEeeeecccccccchhhHHHHHhhcceeeeeeecceeEEEEEeeeeeeeCCCCccceeeeeeeeE
Q psy7487 320 VSYIKSIDVYLGTCFVMVFACLLGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVL 399 (439)
Q Consensus 320 ~~y~~~~d~~~~~c~~~~~~~l~~~~s~l~~~~~l~R~~~~~~~~~~~p~~l~v~~sw~~fw~~~~~~~~r~~l~~~~~l 399 (439)
.+ ..|.|+|+.+++.++|+.|||++|.|+|+.|+|++||+||||+++|.|||++||+|++|
T Consensus 232 -----------------~y--~~G~~scL~v~~~f~R~~g~yllQ~YiPT~l~ViiSWvSFWLd~~A~PARv~LgvtsLL 292 (457)
T KOG3644|consen 232 -----------------SY--TTGVYSCLRVTFTFKRRYGYYLLQTYIPTLLIVIISWVSFWLDPKAVPARVTLGVTSLL 292 (457)
T ss_pred -----------------cc--cCcceEEEEEEEEEEEeehhhhhHHHhhhHhhhhhhhhheecCCCcccceEEehHHHHH
Confidence 11 26778888888889999999999999999999999999999999999999999999999
Q ss_pred EEeeeccccccCCCCCcccceeeeeehhhhhhhhhhhccC
Q psy7487 400 TMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLGL 439 (439)
Q Consensus 400 t~~~~~~~~~~~lp~vsy~kaiD~~~~~c~~~vf~~l~~~ 439 (439)
|++|+.++.+.+||+|||+||||+|+++|+.|||++|+|+
T Consensus 293 tLttq~~~i~~~LP~VSYvKAIDVWm~~C~~FIF~sLlE~ 332 (457)
T KOG3644|consen 293 TLTTQSGGIRRNLPKVSYVKAIDVWMGVCMTFIFGSLLEL 332 (457)
T ss_pred HHHHHhcchhhcCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999996
No 3
>KOG3642|consensus
Probab=100.00 E-value=1.7e-56 Score=429.03 Aligned_cols=254 Identities=44% Similarity=0.821 Sum_probs=227.0
Q ss_pred ccccccccccceeEEEEEEEEeEEeCcccccCCCCCeeEEEeCCcccCCccccceEEeeccccceeeeeccceeEEEeec
Q psy7487 2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIHHS 81 (439)
Q Consensus 2 l~~i~~vde~~~~~t~~~~l~~~W~D~RL~w~~~~~i~~i~l~~~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~v~i~~~ 81 (439)
+++++.+++.+|++++|++++|+|.|+||++|.. .+.+.+...+..+||+||.+|.|++++..|..+.+|.++||..|
T Consensus 76 V~S~GPVSd~~meytid~~FrQ~W~D~RL~f~~~--~~~L~Ln~~m~~kiW~PDTfF~NgkkS~~H~iT~pN~l~Ri~~d 153 (466)
T KOG3642|consen 76 VRSMGPVSDSDMEYTIDCFFRQTWVDDRLKFNGP--QEALPLNSLMLSKIWIPDTFFRNGKKSYAHNITTPNKLVRIYID 153 (466)
T ss_pred EeecccccccCceEEEEEEEEEeehhhhhcccCc--chhhccchhhhcCcccCCcccccCcccceeeccCCCceEEEeEC
Confidence 5788999999999999999999999999999942 34477777788899999999999999999999999999999999
Q ss_pred ceEEEeeeceeEEeeceeeccCCcceeeeeeEEeccccccceEEEEecCCCCceeecC--ccccCceEEeeeEEeeeEee
Q psy7487 82 GSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSN--EVSLPQFKVLGHRQKDLEIS 159 (439)
Q Consensus 82 G~V~~~~r~~~~~~C~~dl~~fPfD~Q~C~l~~~S~~y~~~~v~l~~~~~~~~~~~~~--~~~~~~w~l~~~~~~~~~~~ 159 (439)
|+|.|+.|++..+.|+|++.+||||.|.|+++|+|++|..+|+.++|... ++++++ .+++.|+++.+.....+...
T Consensus 154 G~vlyt~RlTi~A~C~m~l~~fPMD~haCpl~fgSy~Y~~~evvY~W~~~--~VeV~~~~~~~L~Qf~l~g~~~~te~i~ 231 (466)
T KOG3642|consen 154 GTVLYTMRLTIPAECPMHLARFPMDSHACPLKFGSYAYPGSEVVYKWKKR--SVEVNETDSWSLDQFDLLGVSVGTEDIK 231 (466)
T ss_pred CcceEEEEEeecccCcchhhcCCCCcccCcceecccCcCCCCEEEEEecc--cEEEcCCCCccccceeeecccccccceE
Confidence 99999999999999999999999999999999999999999999999875 455544 35688888877443321110
Q ss_pred cCCCceeeEEEEEEEEeeeeEEEEeeehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhhhhhhhhhhhhhHH
Q psy7487 160 LTTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVLSFSIDVYLGTCF 239 (439)
Q Consensus 160 ~~~~~~s~l~~~~~l~R~~~~y~~~i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~~~~~i~~~~~~~~ 239 (439)
T Consensus 232 -------------------------------------------------------------------------------- 231 (466)
T KOG3642|consen 232 -------------------------------------------------------------------------------- 231 (466)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhhhccceeeEEEEeecceeEEEEeeceEEEEEeeeeeeeccccccceeeecceeeEEEEEEeeccccccCCC
Q psy7487 240 VMVFASLLGNYSRLACEIQFVRSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMTTLMSSTNAALPK 319 (439)
Q Consensus 240 ~~v~~slle~~~~l~~~~~~~~~~~~~l~~~~~~~~~~v~~s~~~f~l~~~~~~~r~~l~~~~~lt~~~~~~~~~~~LP~ 319 (439)
T Consensus 232 -------------------------------------------------------------------------------- 231 (466)
T KOG3642|consen 232 -------------------------------------------------------------------------------- 231 (466)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEeeeeeEEEeeeeEEeeeecccccccchhhHHHHHhhcceeeeeeecceeEEEEEeeeeeeeCCCCccceeeeeeeeE
Q psy7487 320 VSYIKSIDVYLGTCFVMVFACLLGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVL 399 (439)
Q Consensus 320 ~~y~~~~d~~~~~c~~~~~~~l~~~~s~l~~~~~l~R~~~~~~~~~~~p~~l~v~~sw~~fw~~~~~~~~r~~l~~~~~l 399 (439)
.-.|.|+-++..|+++|++|||++|+|+||+|.|++||||||+++|++|||+.+|||++|
T Consensus 232 --------------------t~~gey~vmtv~F~L~R~~GYf~iQ~YlPC~ltViLSwVSFWinrEs~paRt~lGITtVL 291 (466)
T KOG3642|consen 232 --------------------TSSGEYSVMTVYFHLSRRQGYFIIQIYLPCILTVVLSWVSFWINREATPARTSLGITTVL 291 (466)
T ss_pred --------------------ecCCCEEEEEEEEeccceeeEEEEeeccceeeeeeeeeeehhccccccccceeeeeeeee
Confidence 122355666778899999999999999999999999999999999999999999999999
Q ss_pred EEeeeccccccCCCCCcccceeeeeehhhhhhhhhhhccC
Q psy7487 400 TMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLGL 439 (439)
Q Consensus 400 t~~~~~~~~~~~lp~vsy~kaiD~~~~~c~~~vf~~l~~~ 439 (439)
||+|++..+|+++|||||++|+|++.++||+|+|+||+|.
T Consensus 292 TMTtLs~~aR~slPKVsy~TAmD~fIavCf~FvFsaliEf 331 (466)
T KOG3642|consen 292 TMTTLSTSARKSLPKVSYATALDVFIAVCFIFVFAALVEF 331 (466)
T ss_pred eeeeeeehhccCCCccccchhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999984
No 4
>TIGR00860 LIC Cation transporter family protein. selective while glycine receptors are anion selective).
Probab=100.00 E-value=1.6e-51 Score=418.29 Aligned_cols=254 Identities=43% Similarity=0.739 Sum_probs=227.9
Q ss_pred ccccccccccceeEEEEEEEEeEEeCcccccCC--CCCeeEEEeCCcccCCccccceEEeeccccceeeeeccceeEEEe
Q psy7487 2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQ--RPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIH 79 (439)
Q Consensus 2 l~~i~~vde~~~~~t~~~~l~~~W~D~RL~w~~--~~~i~~i~l~~~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~v~i~ 79 (439)
+.+|.++||++|++++++|++|+|+|+||+||| ++|++.+.++++ +||+||+++.|++++.++.....+..++++
T Consensus 63 l~~i~~vde~~q~~t~~~wl~~~W~D~rL~Wnp~~y~~i~~i~~~~~---~IW~PDi~l~N~~~~~~~~~~~~~~~v~~~ 139 (459)
T TIGR00860 63 LRSIMDVDEKNMDYTTNIWLRQEWTDERLQWNPEEYPGVTLVRTPDD---SIWVPDIFFYNEKDARFHGITMTNVLVRIH 139 (459)
T ss_pred EEEecccccccceEEEeeeeeeEEeCCccCCCCccCCCceecccccc---ccccCcEEeecCccccccccccCceEEEEc
Confidence 578999999999999999999999999999998 479999999998 999999999999998888777778778888
Q ss_pred ecceEEEeeeceeEEeeceeeccCCcceeeeeeEEeccccccceEEEEecCCCCceee--cCccccCceEEeeeEEe-ee
Q psy7487 80 HSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGV--SNEVSLPQFKVLGHRQK-DL 156 (439)
Q Consensus 80 ~~G~V~~~~r~~~~~~C~~dl~~fPfD~Q~C~l~~~S~~y~~~~v~l~~~~~~~~~~~--~~~~~~~~w~l~~~~~~-~~ 156 (439)
+||+|.|..|...++.|+||+++||||+|+|+++|+||+|+.+++++.|.++ +.+.. +.+..++||++.+.... ..
T Consensus 140 ~~G~V~~~~~~~~~~~C~~d~~~FPfD~Q~C~l~fgSw~y~~~~i~l~~~~~-~~v~~~~~~~~~~~eW~l~~~~~~~~~ 218 (459)
T TIGR00860 140 PNGSVLYSPRITLTLACPMDLRNFPFDVQNCSLKFESWGYTTNDIKLEWKEQ-GAVQVDDSLFISLPEFELLGVYGTRYC 218 (459)
T ss_pred CCCcEEEecCceEEecccceeccCCCCCccccEEEhhhccccceEEEEECCC-CceEechhhccccCceEEEeeeeeeeE
Confidence 8999999999999999999999999999999999999999999999999765 23333 33447999999985443 33
Q ss_pred EeecCCCceeeEEEEEEEEeeeeEEEEeeehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhhh---------
Q psy7487 157 EISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVL--------- 227 (439)
Q Consensus 157 ~~~~~~~~~s~l~~~~~l~R~~~~y~~~i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~~--------- 227 (439)
...+++++|+++++++++||+++||++++++|++++++++|++||+|+++.++|+++|+|++|++++++..
T Consensus 219 ~~~~~~~~y~~l~~~~~l~R~~~~y~~~l~iP~~li~~ls~~sF~Lp~~a~~eRi~L~it~lLs~~vf~~~v~~~lP~~S 298 (459)
T TIGR00860 219 TSETNTGEYPCLTFSFVLRRRPLYYLLQLYIPSILIVILSWVSFWLPADASGARVSLGITTLLTMTTFSSGVRESLPAVS 298 (459)
T ss_pred ecccCCCCcCeEEEEEEEEEcccceeeeehHHHHHHHHHhheeEecCCCCCCCcEEEEEEHHHHHHHHHHHHHhhCCCcc
Confidence 45567889999999999999999999999999999999999999999997799999999999999998876
Q ss_pred -hhhhhhhhhhHHHHHHHHHhhhhccceeeEEE
Q psy7487 228 -SFSIDVYLGTCFVMVFASLLGNYSRLACEIQF 259 (439)
Q Consensus 228 -~~~i~~~~~~~~~~v~~slle~~~~l~~~~~~ 259 (439)
+|+||+|+++|++++++|++++...+..+.+.
T Consensus 299 ~vpli~~y~~~~~~~v~~sli~tv~V~~~~~~~ 331 (459)
T TIGR00860 299 YVKAIDVYFAVCMAFVFLALLETAFVNYVHHKD 331 (459)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhheeEEccC
Confidence 48999999999999999999998877766544
No 5
>KOG3646|consensus
Probab=100.00 E-value=6e-48 Score=369.18 Aligned_cols=252 Identities=19% Similarity=0.385 Sum_probs=234.4
Q ss_pred ccccccccccceeEEEEEEEEeEEeCcccccCC--CCCeeEEEeCCcccCCccccceEEeeccccceeeeeccceeEEEe
Q psy7487 2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQ--RPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIH 79 (439)
Q Consensus 2 l~~i~~vde~~~~~t~~~~l~~~W~D~RL~w~~--~~~i~~i~l~~~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~v~i~ 79 (439)
++||.++||+||.+++++|++++|+|.+|+||| +||++.++.|.+ +||+||+.++|+.+.+|+.....| +.++
T Consensus 60 lqQIidVDEKnQvl~~naWl~y~W~D~~LrW~pseygnI~dvR~p~~---~iWkPDVLLYNSade~FDsTy~tN--~Vv~ 134 (486)
T KOG3646|consen 60 LQQIIDVDEKNQVLSVNAWLQYQWNDYKLRWDPSEYGNITDIRFPGG---NIWKPDVLLYNSADEQFDSTYKTN--YVVY 134 (486)
T ss_pred EeccCCCcccccchhhhhhhheeehhhhhccCHHHhCCceeeccCCc---cccCCceeccccccccCCCcceee--EEEc
Confidence 689999999999999999999999999999998 699999999998 999999999999999887765555 8899
Q ss_pred ecceEEEeeeceeEEeeceeeccCCcceeeeeeEEeccccccceEEEEecCCCCceeecCccccCceEEeeeEEeeeEe-
Q psy7487 80 HSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLEI- 158 (439)
Q Consensus 80 ~~G~V~~~~r~~~~~~C~~dl~~fPfD~Q~C~l~~~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~- 158 (439)
+||.|.|.++...+++|.+|.+.||||.|.|.++||||.|+...++++........+.+.+..++||++.+...++.+.
T Consensus 135 ~tG~v~~vPPGIfk~sCkiDItwFPFD~Q~C~mKFGSWTY~G~~lDL~~~~~~g~~Dls~yi~NGEW~Ll~~pakr~~~~ 214 (486)
T KOG3646|consen 135 STGSVLWVPPGIFKSSCKIDITWFPFDDQVCYLKFGSWTYAGILLDLRIDDEDGGIDLSTYIPNGEWDLLGTPAKREEKT 214 (486)
T ss_pred cCCeeeecCCceeeeeeEEEEEEecccccEEEEEeeeEEEcceeeeeeeccccCCcchhhcccCCceeeccccccceeee
Confidence 9999999999999999999999999999999999999999999999988776556788889999999999988766554
Q ss_pred -ecCCCceeeEEEEEEEEeeeeEEEEeeehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhhh----------
Q psy7487 159 -SLTTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVL---------- 227 (439)
Q Consensus 159 -~~~~~~~s~l~~~~~l~R~~~~y~~~i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~~---------- 227 (439)
.+|+++|+++++++++|||..||..|+++|++++.++++++|-+|+|+ +||+++++|++|+.++|+.+
T Consensus 215 y~cC~epY~dv~F~l~irRRTLyYgfNlIiP~lLIs~m~lLgFtlppD~-gEKitL~iTilLsvc~FL~mvse~~PpTSe 293 (486)
T KOG3646|consen 215 YDCCPEPYPDVTFYLHIRRRTLYYGFNLIIPSLLISLMSLLGFTLPPDA-GEKITLQITILLSVCFFLTMVSEMTPPTSE 293 (486)
T ss_pred cccCCCCcceeEEEEEEEehhhHHHHHHHHHHHHHHHHHHhccccCccc-cceeeeeeehHHHHHHHHHHHHhhcCCccc
Confidence 456999999999999999999999999999999999999999999988 89999999999999999987
Q ss_pred -hhhhhhhhhhHHHHHHHHHhhhhccceeeEEE
Q psy7487 228 -SFSIDVYLGTCFVMVFASLLGNYSRLACEIQF 259 (439)
Q Consensus 228 -~~~i~~~~~~~~~~v~~slle~~~~l~~~~~~ 259 (439)
+|++|+||..|++++.+|+.-+..+++.|.+.
T Consensus 294 aVPllg~fFsc~m~iv~~SvvfTv~vLn~h~R~ 326 (486)
T KOG3646|consen 294 AVPLLGAFFSCCMFIVAASVVFTVIVLNLHHRT 326 (486)
T ss_pred cccHHHHHHHHHHHHHHhhheeEEEEEeeeccC
Confidence 49999999999999999999998888887764
No 6
>KOG3645|consensus
Probab=100.00 E-value=1.8e-45 Score=372.80 Aligned_cols=253 Identities=26% Similarity=0.452 Sum_probs=225.7
Q ss_pred ccccccccccceeEEEEEEEEeEEeCcccccCC--CCCeeEEEeCCcccCCccccceEEeeccccceeeeeccceeEEEe
Q psy7487 2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQ--RPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIH 79 (439)
Q Consensus 2 l~~i~~vde~~~~~t~~~~l~~~W~D~RL~w~~--~~~i~~i~l~~~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~v~i~ 79 (439)
+.+|.++||++|.+++++|+.++|+|+||+||| ++|++.+++|.+ +||+||++++|+.++++......+ +.++
T Consensus 63 l~qii~VdE~~q~~t~~~wl~~~W~D~~L~Wnp~~~~~I~~i~vp~~---~IW~Pdi~l~N~~~~~~~~~~~~~--v~v~ 137 (449)
T KOG3645|consen 63 LYQIIEVDEKNQIMTTNVWLKQSWTDERLSWDPSDYGGITKIRVPSS---KIWLPDIVLYNNADGDFEVEDLTN--VLVT 137 (449)
T ss_pred EEEEEeeccccceEEEEEEeeeEEeccCcccChHHcCCceEEEecHH---HcCcCcEEEEecccccccccccce--EEEE
Confidence 678999999999999999999999999999999 589999999999 999999999998877766655555 8999
Q ss_pred ecceEEEeeeceeEEeeceeeccCCcceeeeeeEEeccccccceEE-EEecCCCCceeecCccccCceEEeeeEEeeeEe
Q psy7487 80 HSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIR-YKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLEI 158 (439)
Q Consensus 80 ~~G~V~~~~r~~~~~~C~~dl~~fPfD~Q~C~l~~~S~~y~~~~v~-l~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~ 158 (439)
++|+|.+..+...++.|++|+++||||.|+|.++|+||.|+.+++. +.........+.++..+++||++.+........
T Consensus 138 ~~G~V~~~~p~i~~s~C~idv~~FPfD~Q~C~i~f~sw~~~~~~i~~~~~~~~~~~~~~~~~~~n~eW~l~~~~~~~~~~ 217 (449)
T KOG3645|consen 138 YTGEVLWYPPAIYKSSCPIDVTYFPFDVQNCSIKFGSWTYDGSEVDGLDLNAQTIEVDLSDFIENSEWELLSVTVVREEK 217 (449)
T ss_pred ECCEEEEEcceEEEeecccccccCCCcceeEeEEEeccccCccccceeeeccccccCCHHHcCCCCcEEEEeeeeEEeec
Confidence 9999999999999999999999999999999999999999999876 543332211566778889999999998877666
Q ss_pred ec--CCCceeeEEEEEEEEeeeeEEEEeeehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhhh---------
Q psy7487 159 SL--TTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVL--------- 227 (439)
Q Consensus 159 ~~--~~~~~s~l~~~~~l~R~~~~y~~~i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~~--------- 227 (439)
.+ +++.|+++.+++++||+|.||++++++||+++.+++.++||+|+++.++|+++|+|++|+|++++.+
T Consensus 218 ~~~~~~~~~~~i~f~l~irRkplyY~v~liiP~~lis~l~il~fflp~~~~~eki~L~it~Ll~~tv~ll~vs~~~P~ts 297 (449)
T KOG3645|consen 218 KYDCCPGPYSDITFTITIRRKPLYYTVNLIIPCFLISFLSILGFFLPSDSGTEKVTLGITVLLAMTVFLLLVSDKMPPTS 297 (449)
T ss_pred ccCCCCCceeEEEEEEEEEeccceEEEehhhhHHHHHHHHhheEEccCCCCCceEEEEHHHHHHHHHHHHHHHhhcCCcc
Confidence 54 5677999999999999999999999999999999999999999888779999999999999999765
Q ss_pred --hhhhhhhhhhHHHHHHHHHhhhhccceeeEEE
Q psy7487 228 --SFSIDVYLGTCFVMVFASLLGNYSRLACEIQF 259 (439)
Q Consensus 228 --~~~i~~~~~~~~~~v~~slle~~~~l~~~~~~ 259 (439)
+|+||.|+.++++++++|++.+.-.+..+.+.
T Consensus 298 ~~iPLig~y~~~~m~~~~~sv~~tv~i~~~~~~~ 331 (449)
T KOG3645|consen 298 SVIPLIGKYLLFTMVLVTISVVVTVVILNLHHRS 331 (449)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHheeEEeeeccc
Confidence 39999999999999999999987777666654
No 7
>PF02931 Neur_chan_LBD: Neurotransmitter-gated ion-channel ligand binding domain ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006202 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This entry presents the extracellular ligand binding domain of these ion channels. This domain forms a pentameric arrangement in the known structure. ; GO: 0005230 extracellular ligand-gated ion channel activity, 0006810 transport, 0016020 membrane; PDB: 1LXH_B 1ABT_B 1TOS_A 1LXG_B 1IDG_B 1TOR_A 1IDH_B 3IGQ_B 3TLU_B 3UU5_A ....
Probab=100.00 E-value=6.8e-32 Score=249.73 Aligned_cols=173 Identities=31% Similarity=0.583 Sum_probs=143.7
Q ss_pred ccccccccccceeEEEEEEEEeEEeCcccccCCC--CCeeEEEeCCcccCCccccceEEeeccccceeeeeccceeEEEe
Q psy7487 2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQR--PGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIH 79 (439)
Q Consensus 2 l~~i~~vde~~~~~t~~~~l~~~W~D~RL~w~~~--~~i~~i~l~~~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~v~i~ 79 (439)
+.+|.++||.++++++++++.++|+|+||+|||. +|++.+.++.+ +||+||+++.|..+.. ......+..+.|+
T Consensus 34 ~~~i~~v~e~~~~~~~~~~~~~~W~D~rL~w~~~~~~~i~~~~v~~~---~iW~P~l~~~n~~~~~-~~~~~~~~~~~v~ 109 (217)
T PF02931_consen 34 LNSIVEVDESEQTFTVDGFIRLSWKDPRLKWNPSDYGGIESIRVPSS---QIWTPDLYFYNSVSGS-FEITEPNSNVRVY 109 (217)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEEEEECCGE-STTTTTTESEEEEEGG---GS----EEETTBSSSE-EECS-SSEEEEEE
T ss_pred HhheeccccccchhhhhhhhceeccccccccChhhccCccccccccc---ceEecccccccccccc-eeccccccccccc
Confidence 5678899999999999999999999999999984 69999999998 9999999999955443 3333356679999
Q ss_pred ecceEEEeeeceeEEeeceeeccCCcceeeeeeEEeccccccceEEEEecCCC------CceeecCccccCceEEeeeEE
Q psy7487 80 HSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGP------NSVGVSNEVSLPQFKVLGHRQ 153 (439)
Q Consensus 80 ~~G~V~~~~r~~~~~~C~~dl~~fPfD~Q~C~l~~~S~~y~~~~v~l~~~~~~------~~~~~~~~~~~~~w~l~~~~~ 153 (439)
+||+|.+..+++.++.|+||+++||||+|+|.+.|+||+|+.+++.+.|.... .....+.....++|++.+...
T Consensus 110 ~~G~V~~~~~~~~~~~C~~d~~~fPfD~q~C~i~~~s~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~ew~~~~~~~ 189 (217)
T PF02931_consen 110 SDGTVRYSPRFTLTFSCPMDLRDFPFDSQNCSIKFGSWSYNSEEVQLKWENKNPPIDENDEVSLSDFVSNSEWKIVSVTS 189 (217)
T ss_dssp TTSEEEEEEEEEEEEEECETTTSSSSSEEEEEEEEEESSSSTTTEEEEESCSSS-TTSSTTTSCTTCETTSSEEEEEEEE
T ss_pred ccchheeeecccccccccccccccccccceeEEEEecccccccceeeeecccCceeeeeccccHHHccccceEEEEeeEE
Confidence 99999999999999999999999999999999999999999999999998743 345556677899999999776
Q ss_pred eeeEe--ecCCCc-eeeEEEEEEEEeee
Q psy7487 154 KDLEI--SLTTGN-YSRLACEIQFVRSM 178 (439)
Q Consensus 154 ~~~~~--~~~~~~-~s~l~~~~~l~R~~ 178 (439)
..... .+..+. |+.+.++++++|+|
T Consensus 190 ~~~~~~~~~~~~~~ys~l~~~~~l~R~~ 217 (217)
T PF02931_consen 190 TRRETTYGCYNEPTYSMLSFTFTLKRRP 217 (217)
T ss_dssp EEEEEEESTSSSCSEEEEEEEEEEEEST
T ss_pred EEEEEccCCcCCCCEeeEEEEEEEEECc
Confidence 55544 334555 99999999999986
No 8
>KOG3643|consensus
Probab=99.98 E-value=1.7e-34 Score=275.90 Aligned_cols=123 Identities=59% Similarity=0.992 Sum_probs=111.5
Q ss_pred ccccccCCCeeEeeeeeEEEeeeeEEeeeecccccccchhhHHHHHhhcceeeeeeecceeEEEEEeeeeeeeCCCCccc
Q psy7487 311 SSTNAALPKVSYIKSIDVYLGTCFVMVFACLLGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPAR 390 (439)
Q Consensus 311 ~~~~~~LP~~~y~~~~d~~~~~c~~~~~~~l~~~~s~l~~~~~l~R~~~~~~~~~~~p~~l~v~~sw~~fw~~~~~~~~r 390 (439)
...+.+||||...+. ........+ -+|+|++|...|+++|.+|||++|+|+|++|+|++|||||||+.+|.|||
T Consensus 201 ~~e~i~LpqFti~~~----~~~s~~~~~--sTG~Y~RL~l~F~l~Rnigf~ilQ~y~PS~LiVilSWVSFWin~~a~pAR 274 (459)
T KOG3643|consen 201 GDEKIELPQFTITEY----HVTSRLVSF--STGNYSRLSLSFQLRRNIGFYILQTYIPSTLIVILSWVSFWINRDASPAR 274 (459)
T ss_pred ceeeeeccceEEEEE----EEEEEEEEE--ccccceeEEEEEEEEeeccEEEEeeecchhhhhHHhHhHhhhccccchhh
Confidence 467789999997643 222223223 38999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeeeEEEeeeccccccCCCCCcccceeeeeehhhhhhhhhhhccC
Q psy7487 391 VALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLGL 439 (439)
Q Consensus 391 ~~l~~~~~lt~~~~~~~~~~~lp~vsy~kaiD~~~~~c~~~vf~~l~~~ 439 (439)
+++|+||+|||+|+.++.+++||+|||+||||+|+++||+|||+||+|+
T Consensus 275 v~lGITTVLTMTTl~t~~n~slPrvSYVKAiDiYL~vCFvfVF~sLLEY 323 (459)
T KOG3643|consen 275 VALGITTVLTMTTLMTSTNESLPRVSYVKAIDVYLGVCFVFVFLSLLEY 323 (459)
T ss_pred eeeceehHHhHHHHHhhhhccCCCccceeeehhhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999996
No 9
>KOG3644|consensus
Probab=99.55 E-value=7.5e-18 Score=168.73 Aligned_cols=175 Identities=35% Similarity=0.624 Sum_probs=137.1
Q ss_pred EEEeecceEEEeeeceeEEeeceeeccCCcceeeeeeEEeccccccceEEEEecCCCCceeecCccccCceEEeeeEEee
Q psy7487 76 IRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKD 155 (439)
Q Consensus 76 v~i~~~G~V~~~~r~~~~~~C~~dl~~fPfD~Q~C~l~~~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~~w~l~~~~~~~ 155 (439)
+.+..-........-.-+-.|.+.+..|++++++|.+.-..+. -+.+. ..+.. ++..+.+++..+.....
T Consensus 164 i~l~~~C~m~L~~fP~D~Q~C~l~~eSy~Yn~~~v~~~W~~~~----pv~~~-----~~i~L-Pdf~l~~~~~~~~~~~y 233 (457)
T KOG3644|consen 164 ISLTLPCNMDLSKFPMDSQECKLQLESYAYNTDDVRLEWKEWN----PVQVK-----KDIKL-PDFSLPSFSTEKCTGSY 233 (457)
T ss_pred EEEeeceeeehhhCCCccceeeEEEEEeccccceEEEEecCCC----Ccccc-----cCccC-Cceeccceeeccccccc
Confidence 4444455555555555667899999999999999998655443 12221 11221 23444455444433322
Q ss_pred eEeecCCCceeeEEEEEEEEeeeeEEEEeeehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhhhhhhhhhhh
Q psy7487 156 LEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVLSFSIDVYL 235 (439)
Q Consensus 156 ~~~~~~~~~~s~l~~~~~l~R~~~~y~~~i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~~~~~i~~~~ 235 (439)
. +|.|++++++++++|+.
T Consensus 234 ~-----~G~~scL~v~~~f~R~~--------------------------------------------------------- 251 (457)
T KOG3644|consen 234 T-----TGVYSCLRVTFTFKRRY--------------------------------------------------------- 251 (457)
T ss_pred c-----CcceEEEEEEEEEEEee---------------------------------------------------------
Confidence 2 67899999999998874
Q ss_pred hhHHHHHHHHHhhhhccceeeEEEEeecceeEEEEeeceEEEEEeeeeeeeccccccceeeecceeeEEEEEEeeccccc
Q psy7487 236 GTCFVMVFASLLGNYSRLACEIQFVRSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMTTLMSSTNA 315 (439)
Q Consensus 236 ~~~~~~v~~slle~~~~l~~~~~~~~~~~~~l~~~~~~~~~~v~~s~~~f~l~~~~~~~r~~l~~~~~lt~~~~~~~~~~ 315 (439)
|||++++|+|+.++|++||+||||+++|+|||+.||+|++||++++..+.+.
T Consensus 252 ----------------------------g~yllQ~YiPT~l~ViiSWvSFWLd~~A~PARv~LgvtsLLtLttq~~~i~~ 303 (457)
T KOG3644|consen 252 ----------------------------GYYLLQTYIPTLLIVIISWVSFWLDPKAVPARVTLGVTSLLTLTTQSGGIRR 303 (457)
T ss_pred ----------------------------hhhhhHHHhhhHhhhhhhhhheecCCCcccceEEehHHHHHHHHHHhcchhh
Confidence 5568999999999999999999999999999999999999999999999999
Q ss_pred cCCCeeEeeeeeEEEeeeeEEeeeecccc--cccchh
Q psy7487 316 ALPKVSYIKSIDVYLGTCFVMVFACLLGN--YSRLAC 350 (439)
Q Consensus 316 ~LP~~~y~~~~d~~~~~c~~~~~~~l~~~--~s~l~~ 350 (439)
.||++||+|++|+|+++|+.|+|++++|+ ++++..
T Consensus 304 ~LP~VSYvKAIDVWm~~C~~FIF~sLlE~A~V~~~~~ 340 (457)
T KOG3644|consen 304 NLPKVSYVKAIDVWMGVCMTFIFGSLLELAVVNYVGR 340 (457)
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999998 666654
No 10
>KOG3642|consensus
Probab=99.55 E-value=3.4e-16 Score=151.66 Aligned_cols=90 Identities=54% Similarity=0.973 Sum_probs=84.4
Q ss_pred EeecceeEEEEeeceEEEEEeeeeeeeccccccceeeecceeeEEEEEEeeccccccCCCeeEeeeeeEEEeeeeEEeee
Q psy7487 260 VRSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMTTLMSSTNAALPKVSYIKSIDVYLGTCFVMVFA 339 (439)
Q Consensus 260 ~~~~~~~l~~~~~~~~~~v~~s~~~f~l~~~~~~~r~~l~~~~~lt~~~~~~~~~~~LP~~~y~~~~d~~~~~c~~~~~~ 339 (439)
.|++|||++|.|+|+++.|++||+|||++++++|+|+++|+|++|||+++....+.++||++|.+++|++...|++|+|+
T Consensus 247 ~R~~GYf~iQ~YlPC~ltViLSwVSFWinrEs~paRt~lGITtVLTMTtLs~~aR~slPKVsy~TAmD~fIavCf~FvFs 326 (466)
T KOG3642|consen 247 SRRQGYFIIQIYLPCILTVVLSWVSFWINREATPARTSLGITTVLTMTTLSTSARKSLPKVSYATALDVFIAVCFIFVFA 326 (466)
T ss_pred cceeeEEEEeeccceeeeeeeeeeehhccccccccceeeeeeeeeeeeeeeehhccCCCccccchhHHHHHHHHHHHHHH
Confidence 33468889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccc--cccch
Q psy7487 340 CLLGN--YSRLA 349 (439)
Q Consensus 340 ~l~~~--~s~l~ 349 (439)
+++|+ +|+..
T Consensus 327 aliEfa~vNYft 338 (466)
T KOG3642|consen 327 ALVEFAVVNYFT 338 (466)
T ss_pred HHHHHHheeeee
Confidence 99988 55554
No 11
>TIGR00860 LIC Cation transporter family protein. selective while glycine receptors are anion selective).
Probab=99.50 E-value=1.7e-16 Score=161.96 Aligned_cols=98 Identities=53% Similarity=0.894 Sum_probs=94.5
Q ss_pred cccccccchhhHHHHHhhcceeeeeeecceeEEEEEeeeeeeeCCCCccceeeeeeeeEEEeeeccccccCCCCCcccce
Q psy7487 341 LLGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKS 420 (439)
Q Consensus 341 l~~~~s~l~~~~~l~R~~~~~~~~~~~p~~l~v~~sw~~fw~~~~~~~~r~~l~~~~~lt~~~~~~~~~~~lp~vsy~ka 420 (439)
-.|.|+++...+.++|+.+||.++.++|+.+++++||++||+++++.++|+++|+|++|+++++...++..+|+.||+++
T Consensus 223 ~~~~y~~l~~~~~l~R~~~~y~~~l~iP~~li~~ls~~sF~Lp~~a~~eRi~L~it~lLs~~vf~~~v~~~lP~~S~vpl 302 (459)
T TIGR00860 223 NTGEYPCLTFSFVLRRRPLYYLLQLYIPSILIVILSWVSFWLPADASGARVSLGITTLLTMTTFSSGVRESLPAVSYVKA 302 (459)
T ss_pred CCCCcCeEEEEEEEEEcccceeeeehHHHHHHHHHhheeEecCCCCCCCcEEEEEEHHHHHHHHHHHHHhhCCCcchHHH
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeehhhhhhhhhhhcc
Q psy7487 421 IDVYLGTCFVMVFASLLG 438 (439)
Q Consensus 421 iD~~~~~c~~~vf~~l~~ 438 (439)
||+|+++|++|+|++++|
T Consensus 303 i~~y~~~~~~~v~~sli~ 320 (459)
T TIGR00860 303 IDVYFAVCMAFVFLALLE 320 (459)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999987
No 12
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=99.39 E-value=4.9e-17 Score=149.09 Aligned_cols=75 Identities=41% Similarity=0.778 Sum_probs=72.2
Q ss_pred eeecceeEEEEEeeeeeeeCCCCccceeeeeeeeEEEeeeccccccCCCCCcccceeeeeehhhhhhhhhhhccC
Q psy7487 365 IYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLGL 439 (439)
Q Consensus 365 ~~~p~~l~v~~sw~~fw~~~~~~~~r~~l~~~~~lt~~~~~~~~~~~lp~vsy~kaiD~~~~~c~~~vf~~l~~~ 439 (439)
.|+||.+++++||++||+++++.|+|+++|+|++|+++++...++..||++||.|++|+|+.+|++|+|++++|+
T Consensus 1 l~~P~~li~~~s~~~f~~~~~~~~~rv~l~it~lL~~~~~~~~~~~~lP~~s~~~pl~~~~~~~~~~v~~~~~~~ 75 (237)
T PF02932_consen 1 LIIPCILIVVLSWLSFWLPPESGPERVTLGITTLLAMTVFLLMVAENLPPTSYAKPLDGWYFICTMFVFSASLEF 75 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred CeehHHHHHHHHHhheEeCccccccccccchhHHHHHHHHHhhhhhhhcccccccchhhhhccccchhhhHHHHh
Confidence 379999999999999999999999999999999999999999999999999999999999999999999999873
No 13
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=98.87 E-value=1.3e-10 Score=106.30 Aligned_cols=65 Identities=40% Similarity=0.748 Sum_probs=52.6
Q ss_pred eehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhhhh----------hhhhhhhhhHHHHHHHHHhhh
Q psy7487 185 IYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVLS----------FSIDVYLGTCFVMVFASLLGN 249 (439)
Q Consensus 185 i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~~~----------~~i~~~~~~~~~~v~~slle~ 249 (439)
+++||+++++++|++||+|+++++||+++|+|++|+|++++.++ ..++.|+..|+++++++++|.
T Consensus 1 l~~P~~li~~~s~~~f~~~~~~~~~rv~l~it~lL~~~~~~~~~~~~lP~~s~~~pl~~~~~~~~~~v~~~~~~~ 75 (237)
T PF02932_consen 1 LIIPCILIVVLSWLSFWLPPESGPERVTLGITTLLAMTVFLLMVAENLPPTSYAKPLDGWYFICTMFVFSASLEF 75 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred CeehHHHHHHHHHhheEeCccccccccccchhHHHHHHHHHhhhhhhhcccccccchhhhhccccchhhhHHHHh
Confidence 47999999999999999999997799999999999999988862 234456666666666665554
No 14
>KOG3645|consensus
Probab=96.80 E-value=1.7e-05 Score=81.10 Aligned_cols=95 Identities=31% Similarity=0.501 Sum_probs=85.5
Q ss_pred cccccchhhHHHHHhhcceeeeeeecceeEEEEEeeeeeeeCCCCccceeeeeeeeEEEeeeccccccCCCCCcc-ccee
Q psy7487 343 GNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISY-VKSI 421 (439)
Q Consensus 343 ~~~s~l~~~~~l~R~~~~~~~~~~~p~~l~v~~sw~~fw~~~~~~~~r~~l~~~~~lt~~~~~~~~~~~lp~vsy-~kai 421 (439)
+.|+-+...+.++|+..||....++||.++..++=++|+++.+....|+++|++.+|+++....-+...+|+-|- +--|
T Consensus 224 ~~~~~i~f~l~irRkplyY~v~liiP~~lis~l~il~fflp~~~~~eki~L~it~Ll~~tv~ll~vs~~~P~ts~~iPLi 303 (449)
T KOG3645|consen 224 GPYSDITFTITIRRKPLYYTVNLIIPCFLISFLSILGFFLPSDSGTEKVTLGITVLLAMTVFLLLVSDKMPPTSSVIPLI 303 (449)
T ss_pred CceeEEEEEEEEEeccceEEEehhhhHHHHHHHHhheEEccCCCCCceEEEEHHHHHHHHHHHHHHHhhcCCccCcchHH
Confidence 347778888999999999999999999999999999999997777789999999999999998889999999998 7888
Q ss_pred eeeehhhhhhhhhhhc
Q psy7487 422 DVYLGTCFVMVFASLL 437 (439)
Q Consensus 422 D~~~~~c~~~vf~~l~ 437 (439)
=.|..+++.++.++.+
T Consensus 304 g~y~~~~m~~~~~sv~ 319 (449)
T KOG3645|consen 304 GKYLLFTMVLVTISVV 319 (449)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8899999988887764
No 15
>KOG3646|consensus
Probab=85.02 E-value=0.0072 Score=59.92 Aligned_cols=84 Identities=23% Similarity=0.440 Sum_probs=67.3
Q ss_pred cccchhhHHHHHhhcceeeeeeecceeEEEEEeeeeeeeCCCCccceeeeeeeeEEEeeeccccccCCCCCcccce-eee
Q psy7487 345 YSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKS-IDV 423 (439)
Q Consensus 345 ~s~l~~~~~l~R~~~~~~~~~~~p~~l~v~~sw~~fw~~~~~~~~r~~l~~~~~lt~~~~~~~~~~~lp~vsy~ka-iD~ 423 (439)
|.-+....+++||.-||-....+|+.|+-.++-.+|-+++++ ..++++++|.+|+......-++...|..|..-- +-+
T Consensus 222 Y~dv~F~l~irRRTLyYgfNlIiP~lLIs~m~lLgFtlppD~-gEKitL~iTilLsvc~FL~mvse~~PpTSeaVPllg~ 300 (486)
T KOG3646|consen 222 YPDVTFYLHIRRRTLYYGFNLIIPSLLISLMSLLGFTLPPDA-GEKITLQITILLSVCFFLTMVSEMTPPTSEAVPLLGA 300 (486)
T ss_pred cceeEEEEEEEehhhHHHHHHHHHHHHHHHHHHhccccCccc-cceeeeeeehHHHHHHHHHHHHhhcCCccccccHHHH
Confidence 444556677889999999999999999999999999999965 589999999999998888888888999885432 334
Q ss_pred eehhhh
Q psy7487 424 YLGTCF 429 (439)
Q Consensus 424 ~~~~c~ 429 (439)
|+.-|+
T Consensus 301 fFsc~m 306 (486)
T KOG3646|consen 301 FFSCCM 306 (486)
T ss_pred HHHHHH
Confidence 444333
No 16
>PF14494 DUF4436: Domain of unknown function (DUF4436)
Probab=71.98 E-value=3.4 Score=38.87 Aligned_cols=74 Identities=20% Similarity=0.282 Sum_probs=40.1
Q ss_pred ceeeccCCcceeeee-eEEeccccccceEEEEecCCCCceeecCccccCceEEeeeEEeeeEeecCCCceeeEEEEEEEE
Q psy7487 97 PMNLQYFPMDRQLCH-IEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLEISLTTGNYSRLACEIQFV 175 (439)
Q Consensus 97 ~~dl~~fPfD~Q~C~-l~~~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~~~~~~~~s~l~~~~~l~ 175 (439)
.-+..+||||+.+-. +.+..+.-+.++-. ..+..+.-..+...|++........ + ....+.++++
T Consensus 96 ~G~~~~yPFD~Y~~~~i~v~~~~g~~~~~~------~~p~~v~~~~s~~gW~i~~~~~~~~-----~---~~~~~~i~l~ 161 (256)
T PF14494_consen 96 DGDINNYPFDRYRTDPIRVSAFVGNGDNRE------PVPARVTLTGSLSGWDISATRVADA-----D---GGDGVDITLK 161 (256)
T ss_pred cCCccCCCCcccccceEEEEEEecCCCccc------ccceEEEEEcccCCeEEEeeecCCC-----C---CceeEEEEEE
Confidence 355788999999888 66654432221111 1122222223355687754322111 1 4567888999
Q ss_pred eeeeEEEEe
Q psy7487 176 RSMGYYLIQ 184 (439)
Q Consensus 176 R~~~~y~~~ 184 (439)
|..+--...
T Consensus 162 Rs~~~~~F~ 170 (256)
T PF14494_consen 162 RSRGVLFFA 170 (256)
T ss_pred ccCcceehH
Confidence 987755543
No 17
>KOG0660|consensus
Probab=40.60 E-value=8.9 Score=37.51 Aligned_cols=19 Identities=32% Similarity=0.656 Sum_probs=15.9
Q ss_pred CCCCcccceeeeeehhhhh
Q psy7487 412 LPKISYVKSIDVYLGTCFV 430 (439)
Q Consensus 412 lp~vsy~kaiD~~~~~c~~ 430 (439)
+-.-.|.||||+|+.+|..
T Consensus 200 l~~~~Yt~aiDiWSvGCI~ 218 (359)
T KOG0660|consen 200 LNSSEYTKAIDIWSVGCIL 218 (359)
T ss_pred hccccccchhhhhhhhHHH
Confidence 4456799999999999965
No 18
>KOG0666|consensus
Probab=40.47 E-value=7.8 Score=37.45 Aligned_cols=18 Identities=39% Similarity=0.619 Sum_probs=15.2
Q ss_pred CCCCcccceeeeeehhhh
Q psy7487 412 LPKISYVKSIDVYLGTCF 429 (439)
Q Consensus 412 lp~vsy~kaiD~~~~~c~ 429 (439)
|-.--|+||||+|..+|.
T Consensus 212 LGa~hYT~AiDvWAiGCI 229 (438)
T KOG0666|consen 212 LGARHYTKAIDVWAIGCI 229 (438)
T ss_pred cccccccchhhhHHHHHH
Confidence 445579999999999995
No 19
>KOG0658|consensus
Probab=30.74 E-value=22 Score=35.00 Aligned_cols=18 Identities=28% Similarity=0.632 Sum_probs=15.0
Q ss_pred CCCcccceeeeeehhhhh
Q psy7487 413 PKISYVKSIDVYLGTCFV 430 (439)
Q Consensus 413 p~vsy~kaiD~~~~~c~~ 430 (439)
---.|.++||+|+++|.+
T Consensus 199 ga~~Yt~~IDiWSaGCV~ 216 (364)
T KOG0658|consen 199 GATEYTTSIDIWSAGCVM 216 (364)
T ss_pred CccccCceeEEhhhhHHH
Confidence 345689999999999965
No 20
>KOG0615|consensus
Probab=21.05 E-value=31 Score=34.69 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=17.5
Q ss_pred Ccccceeeeeehhhhhhhhhh
Q psy7487 415 ISYVKSIDVYLGTCFVMVFAS 435 (439)
Q Consensus 415 vsy~kaiD~~~~~c~~~vf~~ 435 (439)
-.|.++.|+|+++|.+||.++
T Consensus 356 ~~~~~kVDiWSlGcvLfvcLs 376 (475)
T KOG0615|consen 356 EYYPSKVDIWSLGCVLFVCLS 376 (475)
T ss_pred ecccchheeeeccceEEEEec
Confidence 346689999999999998764
Done!