Query psy7487
Match_columns 439
No_of_seqs 329 out of 1732
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 19:35:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7487.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7487hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rhw_A Avermectin-sensitive gl 100.0 2.9E-54 9.8E-59 425.1 13.7 246 2-251 36-296 (347)
2 2bg9_E Acetylcholine receptor 100.0 6E-54 2.1E-58 425.8 4.0 247 2-254 36-298 (370)
3 2bg9_B Acetylcholine receptor 100.0 4.6E-53 1.6E-57 419.2 9.5 245 2-254 37-294 (370)
4 2bg9_C Acetylcholine receptor 100.0 7E-53 2.4E-57 417.7 9.5 242 2-254 39-296 (369)
5 3tlw_A GLR4197 protein, GLIC; 100.0 5E-52 1.7E-56 405.0 14.4 242 2-254 28-282 (321)
6 2bg9_A Acetylcholine receptor 100.0 1.2E-52 4E-57 416.5 9.0 245 2-254 37-297 (370)
7 4aq5_A Acetylcholine receptor 100.0 2.2E-52 7.5E-57 423.4 7.1 248 2-257 61-324 (461)
8 4aq5_E Acetylcholine receptor 100.0 3.8E-52 1.3E-56 424.9 3.2 251 2-257 36-308 (488)
9 4aq5_C Acetylcholine receptor 100.0 2.5E-51 8.4E-56 421.8 7.7 250 2-257 60-335 (522)
10 3rqw_A ELIC pentameric ligand 100.0 7E-51 2.4E-55 397.1 9.7 244 2-256 20-287 (322)
11 4aq5_B Acetylcholine receptor 100.0 9.2E-52 3.1E-56 422.6 2.9 248 2-256 61-329 (493)
12 2qc1_B Acetylcholine receptor 100.0 1.5E-38 5.2E-43 291.1 19.5 170 2-178 38-212 (212)
13 3igq_A GLR4197 protein; plgic 100.0 5.2E-38 1.8E-42 284.2 15.4 171 2-181 24-197 (201)
14 4aoe_A Acetylcholine-binding p 100.0 1.8E-37 6.3E-42 280.6 17.1 165 2-176 37-204 (205)
15 4aod_A Acetylcholine-binding p 100.0 2.6E-37 8.7E-42 280.1 17.0 165 2-176 37-204 (205)
16 3sq6_A ACHBP, neuronal acetylc 100.0 5.2E-37 1.8E-41 278.8 17.8 163 2-177 35-203 (204)
17 2wn9_A Soluble acetylcholine r 100.0 8.5E-37 2.9E-41 282.2 16.8 174 2-187 46-226 (228)
18 4afh_A ACHBP; acetylcholine-bi 100.0 4.3E-36 1.5E-40 276.9 17.5 171 2-184 42-220 (230)
19 2bj0_A Acetylcholine-binding p 100.0 1.1E-35 3.8E-40 270.2 17.8 166 2-177 33-203 (203)
20 1uw6_A Acetylcholine-binding p 100.0 2.6E-35 8.8E-40 269.4 18.0 168 2-183 36-211 (211)
21 2lkg_A Acetylcholine receptor; 99.7 1.2E-21 4E-26 164.6 -16.9 97 341-438 32-129 (140)
22 2ksr_A Neuronal acetylcholine 99.7 3.5E-19 1.2E-23 153.7 -4.8 95 159-254 9-114 (164)
23 3rhw_A Avermectin-sensitive gl 99.7 3E-20 1E-24 182.4 -15.4 119 314-438 175-293 (347)
24 1vry_A Glycine receptor alpha- 99.7 1.3E-19 4.5E-24 133.5 -8.2 53 387-439 1-53 (76)
25 2ksr_A Neuronal acetylcholine 99.7 1.2E-20 4.3E-25 162.7 -16.0 95 343-438 13-108 (164)
26 2lkg_A Acetylcholine receptor; 99.6 3.6E-19 1.2E-23 149.5 -11.1 93 161-254 32-135 (140)
27 2bg9_E Acetylcholine receptor 99.6 6.1E-20 2.1E-24 181.6 -21.8 97 342-438 195-292 (370)
28 2bg9_A Acetylcholine receptor 99.6 1.1E-19 3.9E-24 179.7 -22.0 95 343-438 196-291 (370)
29 3tlw_A GLR4197 protein, GLIC; 99.6 1.4E-18 4.7E-23 168.8 -14.0 120 313-438 157-276 (321)
30 2lly_A Neuronal acetylcholine 99.6 3.1E-19 1.1E-23 149.9 -16.4 85 353-438 2-87 (137)
31 2bg9_B Acetylcholine receptor 99.6 3.2E-19 1.1E-23 176.3 -20.2 97 341-438 191-288 (370)
32 2bg9_C Acetylcholine receptor 99.6 1.4E-19 4.9E-24 178.8 -23.1 96 342-438 194-290 (369)
33 2lly_A Neuronal acetylcholine 99.5 1.6E-16 5.6E-21 133.3 -5.4 83 173-256 2-95 (137)
34 3rqw_A ELIC pentameric ligand 99.5 2.2E-18 7.4E-23 167.5 -19.6 95 342-438 185-279 (322)
35 4aq5_B Acetylcholine receptor 99.5 2.7E-17 9.3E-22 167.9 -16.5 94 344-438 227-321 (493)
36 4aq5_A Acetylcholine receptor 99.4 8E-18 2.7E-22 170.3 -21.9 95 343-438 219-315 (461)
37 4aq5_E Acetylcholine receptor 99.4 1.5E-17 5.3E-22 169.5 -22.1 97 342-438 202-299 (488)
38 4aq5_C Acetylcholine receptor 99.3 8.5E-17 2.9E-21 165.2 -22.4 96 342-438 230-326 (522)
39 1oed_E Acetylcholine receptor 99.3 6.9E-14 2.4E-18 129.9 -6.2 79 178-256 1-90 (260)
40 1oed_A Acetylcholine receptor 99.2 9E-14 3.1E-18 126.6 -6.9 78 178-256 1-89 (227)
41 1oed_B Acetylcholine receptor 99.2 2E-13 7E-18 126.0 -6.0 78 178-256 1-89 (250)
42 1oed_C Acetylcholine receptor 99.2 2E-13 6.9E-18 126.8 -6.8 79 178-257 1-90 (260)
43 1oed_A Acetylcholine receptor 99.1 1.1E-14 3.6E-19 132.7 -19.0 79 359-438 2-81 (227)
44 1oed_E Acetylcholine receptor 99.1 1.8E-14 6.3E-19 133.8 -17.8 80 359-438 2-82 (260)
45 1vry_A Glycine receptor alpha- 99.1 1.9E-14 6.3E-19 106.0 -15.5 60 292-351 1-62 (76)
46 1oed_B Acetylcholine receptor 99.1 2.7E-14 9.3E-19 131.9 -18.7 79 359-438 2-81 (250)
47 1oed_C Acetylcholine receptor 98.8 1.1E-12 3.6E-17 122.0 -19.0 79 359-438 2-81 (260)
48 1mot_A Glycine receptor alpha- 97.1 1.2E-05 4.1E-10 47.4 -3.6 28 387-414 1-28 (28)
49 1mot_A Glycine receptor alpha- 96.3 6.4E-05 2.2E-09 44.2 -4.3 28 292-319 1-28 (28)
50 2wn9_A Soluble acetylcholine r 33.5 2.6 8.9E-05 37.7 -3.6 26 342-367 201-226 (228)
51 1uw6_A Acetylcholine-binding p 21.1 17 0.00059 31.7 -0.5 23 341-363 189-211 (211)
No 1
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=100.00 E-value=2.9e-54 Score=425.13 Aligned_cols=246 Identities=40% Similarity=0.760 Sum_probs=226.5
Q ss_pred ccccccccccceeEEEEEEEEeEEeCcccccCCC--CCeeEEEe-CCcccCCccccceEEeeccccceeeeeccceeEEE
Q psy7487 2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQR--PGVETLSV-GSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRI 78 (439)
Q Consensus 2 l~~i~~vde~~~~~t~~~~l~~~W~D~RL~w~~~--~~i~~i~l-~~~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~v~i 78 (439)
+.+|.++||++|++++++|++|+|+|+||+|||. ++++.+.+ +++ +||+||+++.|++++.+|....+|..++|
T Consensus 36 l~~i~~vde~~~~~t~~~~l~~~W~D~rL~w~p~~~~~~~~l~~~~~~---~IW~PDi~l~N~~~~~~~~~~~~n~~v~i 112 (347)
T 3rhw_A 36 LRTISKIDVVNMEYSAQLTLRESWIDKRLSYGVKGDGQPDFVILTVGH---QIWMPDTFFPNEKQAYKHTIDKPNVLIRI 112 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEEEECGGGCSSTTCSSSCSEEECCTTC---CCCCCCEECTTEEEEEECCSSSCSEEEEE
T ss_pred EEeeccccccceeEEEEEEEeeEEECcccCCCCccCCCceEEEecchh---ceecCCEeeeccccccccccccccEEEEE
Confidence 5789999999999999999999999999999984 67888876 555 99999999999999988888888888999
Q ss_pred eecceEEEeeeceeEEeeceeeccCCcceeeeeeEEeccccccceEEEEecCCCCceeecC--ccccCceEEeeeEEeee
Q psy7487 79 HHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSN--EVSLPQFKVLGHRQKDL 156 (439)
Q Consensus 79 ~~~G~V~~~~r~~~~~~C~~dl~~fPfD~Q~C~l~~~S~~y~~~~v~l~~~~~~~~~~~~~--~~~~~~w~l~~~~~~~~ 156 (439)
++||+|.|..|.+.++.|+||+++||||+|+|+++|+||+|+.+++++.|.++ .++..++ +..++||++.+.....+
T Consensus 113 ~~~G~V~~~~~~~~~s~C~~dl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~-~~~~~~~~~~~~~~e~~l~~~~~~~~ 191 (347)
T 3rhw_A 113 HNDGTVLYSVRISLVLSCPMYLQYYPMDVQQCSIDLASYAYTTKDIEYLWKEH-SPLQLKVGLSSSLPSFQLTNTSTTYC 191 (347)
T ss_dssp ETTSEEEEEEEEEEEEECCCCCTTGGGCEEEEEEEEEESSCCTTTEEEEECSS-CSEEECTTSGGGCCSEEEEEEEEEEC
T ss_pred eCCCCEEEecceEEEEEeeeeeccCCCcceeEEEEeccCcCChhhEEEEecCC-CceeecCcceeEccceEEeeEEeeEe
Confidence 99999999999999999999999999999999999999999999999999875 3455554 67789999999887777
Q ss_pred EeecCCCceeeEEEEEEEEeeeeEEEEeeehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhhh---------
Q psy7487 157 EISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVL--------- 227 (439)
Q Consensus 157 ~~~~~~~~~s~l~~~~~l~R~~~~y~~~i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~~--------- 227 (439)
...+++|+|+++.+++++||+++||++++++||+++++++|++||+|+++.|+|+++|+|++|+|++++..
T Consensus 192 ~~~~~~~~y~~l~~~~~l~R~~~~y~~~l~iP~~li~~ls~~sF~lp~~~~~~Rv~lgit~lLt~tv~~~~~~~~lP~~S 271 (347)
T 3rhw_A 192 TSVTNTGIYSCLRTTIQLKREFSFYLLQLYIPSCMLVIVSWVSFWFDRTAIPARVTLGVTTLLTMTAQSAGINSQLPPVS 271 (347)
T ss_dssp CEECSSCEECEEEEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHTSCCCS
T ss_pred eeeecccceeEEEEEEEEEEEeeEEEEEeehhHHHHHHHhheEEeccCCCCcceEEEEeehHHHHHHHHHHHHhhCCCcc
Confidence 66778899999999999999999999999999999999999999999999889999999999999999876
Q ss_pred -hhhhhhhhhhHHHHHHHHHhhhhc
Q psy7487 228 -SFSIDVYLGTCFVMVFASLLGNYS 251 (439)
Q Consensus 228 -~~~i~~~~~~~~~~v~~slle~~~ 251 (439)
+|+||+|+++|++++++|++|+..
T Consensus 272 ~v~~id~~~~~~~~~v~~slle~~~ 296 (347)
T 3rhw_A 272 YIKAIDVWIGACMTFIFCALLEFAL 296 (347)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999999999743
No 2
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=100.00 E-value=6e-54 Score=425.75 Aligned_cols=247 Identities=19% Similarity=0.362 Sum_probs=223.6
Q ss_pred ccccccccccceeEEEEEEEEeEEeCcccccCCC--CCeeEEEeCCcccCCccccceEEeeccccceeeeeccceeEEEe
Q psy7487 2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQR--PGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIH 79 (439)
Q Consensus 2 l~~i~~vde~~~~~t~~~~l~~~W~D~RL~w~~~--~~i~~i~l~~~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~v~i~ 79 (439)
+.+|.++||++|++++++|++|+|+||||+|||. +|++.+.++.+ +||+||+++.|++++.+|.....+ +.|+
T Consensus 36 l~~i~~vde~~~~~~~~~~l~~~W~D~rL~w~~~~~~~i~~l~v~~~---~IW~PDi~~~N~~~~~~~~~~~~~--~~v~ 110 (370)
T 2bg9_E 36 LTNLISLNEKEEALTTNVWIEIQWNDYRLSWNTSEYEGIDLVRIPSE---LLWLPDVVLENNVDGQFEVAYYAN--VLVY 110 (370)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEEEECGGGCCCTTTTTTCSCBCCCGG---GSCCCCEEESSSCCSCCBSSSSCC--CEEC
T ss_pred ehhhhchhhcccceeEeEEEeeEEECCCcCCChhhcCCeeEEeechh---ccCCCCEeeccccCCccccccccc--EEEE
Confidence 5789999999999999999999999999999984 78899999987 999999999999998887665555 5799
Q ss_pred ecceEEEeeeceeEEeeceeeccCCcceeeeeeEEeccccccceEEEEecCCCCceeecCccccCceEEeeeEEeeeEe-
Q psy7487 80 HSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLEI- 158 (439)
Q Consensus 80 ~~G~V~~~~r~~~~~~C~~dl~~fPfD~Q~C~l~~~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~- 158 (439)
+||+|.|..|.+.++.|+||+++||||+|+|+++|+||+|+.+++++.|..++ .++.++...++||++.+........
T Consensus 111 ~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~i~l~~~~~~-~~~~~~~~~~~eW~l~~~~~~~~~~~ 189 (370)
T 2bg9_E 111 NDGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQTYNAHEVNLQLSAEE-GIDPEDFTENGEWTIRHRPAKKNYNW 189 (370)
T ss_dssp SSSEEEECCEEEEEECCCCSSCSSSSSCCBCCEEEEESSSCTTSCCEECCCSC-CCGGGSCCTTSSEEEEECCCCEECCC
T ss_pred CCccEEEecCEEEEEECcccccCCCCCeEEEEEEEEeeccccceeEEEecCCC-cccHhhcccccEEEEecceeEEEEEe
Confidence 99999999999999999999999999999999999999999999999998642 4556666778999999887655443
Q ss_pred --ecCCCceeeEEEEEEEEeeeeEEEEeeehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhhh---------
Q psy7487 159 --SLTTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVL--------- 227 (439)
Q Consensus 159 --~~~~~~~s~l~~~~~l~R~~~~y~~~i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~~--------- 227 (439)
.+++|+|+++++++++||+++||++++++|++++++++|++||+|+++.++|+++|+|++|+|++++..
T Consensus 190 ~y~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sFwlp~~a~~~Rv~lgit~lLt~t~~~~~~~~~lP~~S 269 (370)
T 2bg9_E 190 QLTKDDIDFQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETS 269 (370)
T ss_dssp CTTCCCSCCCEEEECCEEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCcEEEEEEEEEEccCceeEEEehhHHHHHHHHHHeEEeccccCcceeEEeeeHHHHHHHHHHHHHHhCCCcc
Confidence 346889999999999999999999999999999999999999999998899999999999999998865
Q ss_pred --hhhhhhhhhhHHHHHHHHHhhhhccce
Q psy7487 228 --SFSIDVYLGTCFVMVFASLLGNYSRLA 254 (439)
Q Consensus 228 --~~~i~~~~~~~~~~v~~slle~~~~l~ 254 (439)
+|+||+|+.+|++++++|++|+...+.
T Consensus 270 ~~vp~i~~~~~~~~~~v~~sll~~v~v~~ 298 (370)
T 2bg9_E 270 LNVPLIGKYLIFVMFVSLVIVTNCVIVLN 298 (370)
T ss_dssp HHSCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHhhhee
Confidence 489999999999999999999865544
No 3
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=100.00 E-value=4.6e-53 Score=419.18 Aligned_cols=245 Identities=22% Similarity=0.424 Sum_probs=222.6
Q ss_pred ccccccccccceeEEEEEEEEeEEeCcccccCCC--CCeeEEEeCCcccCCccccceEEeeccccceeeeeccceeEEEe
Q psy7487 2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQR--PGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIH 79 (439)
Q Consensus 2 l~~i~~vde~~~~~t~~~~l~~~W~D~RL~w~~~--~~i~~i~l~~~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~v~i~ 79 (439)
+.+|.++||++|++++++|++|+|+|+||+|||. +|++.+.++.+ +||+||+++.|++++.+|.....+ +.++
T Consensus 37 l~~i~~vde~~~~~~~~~~l~~~W~D~rL~w~~~~~~~i~~l~v~~~---~IW~PDi~~~N~~~~~~~~~~~~~--~~v~ 111 (370)
T 2bg9_B 37 LTSLLILNEKNEEMTTSVFLNLAWTDYRLQWDPAAYEGIKDLSIPSD---DVWQPDIVLMNNNDGSFEITLHVN--VLVQ 111 (370)
T ss_dssp EEEEEEEETTTTEEEEEEECEEEEECTTSCCCTTTTSSCSEEEEESS---SSCCCCEEESSCCCSCEESSSSCE--EEEE
T ss_pred ehhhhhhhccccceEEEEEEeeeeECcccCcCccccCCeeEEEechh---hccCCCccccccccccccccccce--EEEe
Confidence 6789999999999999999999999999999984 78999999987 999999999999998887665444 7899
Q ss_pred ecceEEEeeeceeEEeeceeeccCCcceeeeeeEEeccccccceEEEEecCCCCceeecCccccCceEEeeeEEeeeEee
Q psy7487 80 HSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLEIS 159 (439)
Q Consensus 80 ~~G~V~~~~r~~~~~~C~~dl~~fPfD~Q~C~l~~~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~~ 159 (439)
+||+|.|..|.+.++.|+||+++||||+|+|+++|+||+|+.+++++.|..+ +.++.++...++||++.+.....+ +.
T Consensus 112 ~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~i~l~~~~~-~~~~~~~~~~~~eW~l~~~~~~~~-y~ 189 (370)
T 2bg9_B 112 HTGAVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSYTYDTSEVILQHALD-AMINQDAFTENGQWSIEHKPSRKN-WR 189 (370)
T ss_dssp TTSEEEECCEEEEEECCCCTTCSSSTTCCCCEEEEEESSCCBTSCEEECSCC-CCCSTTSCCTTCSSEECCCCEEEC-CC
T ss_pred CCceEEEEecceEEEEccCcccCCCCCceeeeEEEEeccccccEEEEEeccC-CccccccccccceEEEeccceEEe-ec
Confidence 9999999999999999999999999999999999999999999999999322 345566677899999998877655 56
Q ss_pred cCCCceeeEEEEEEEEeeeeEEEEeeehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhhh-----------h
Q psy7487 160 LTTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVL-----------S 228 (439)
Q Consensus 160 ~~~~~~s~l~~~~~l~R~~~~y~~~i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~~-----------~ 228 (439)
+++|+|+++++++++||+++||++++++|++++++++|++||+|++ .++|+++|+|++|+|++++.. +
T Consensus 190 ~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sFwlp~~-~~~Rv~lgit~lLt~t~~~~~~~~~lP~~S~~v 268 (370)
T 2bg9_B 190 SDDPSYEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPD-AGEKMSLSISALLALTVFLLLLADKVPETSLSV 268 (370)
T ss_dssp TTSSSBCCEEEECCEECCCCSSHHHHHHHHHHHHHHHHHHHHSTTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCccEEEEEEEEEEcccceeeeecchHHHHHHHHhheEEccCC-CCceEEEEehHHHHHHHHHHHHHhhCCCccccc
Confidence 6789999999999999999999999999999999999999999999 699999999999999998875 4
Q ss_pred hhhhhhhhhHHHHHHHHHhhhhccce
Q psy7487 229 FSIDVYLGTCFVMVFASLLGNYSRLA 254 (439)
Q Consensus 229 ~~i~~~~~~~~~~v~~slle~~~~l~ 254 (439)
|+||+|+.+|++++++|++|+...+.
T Consensus 269 p~i~~~~~~~~~~v~~sll~~v~v~~ 294 (370)
T 2bg9_B 269 PIIISYLMFIMILVAFSVILSVVVLN 294 (370)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 89999999999999999999865544
No 4
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=100.00 E-value=7e-53 Score=417.68 Aligned_cols=242 Identities=20% Similarity=0.386 Sum_probs=219.5
Q ss_pred ccccccccccceeEEEEEEEEeEEeCcccccCCC--CCeeEEEeCCcccCCccccceEEeeccccceeeeeccceeEEEe
Q psy7487 2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQR--PGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIH 79 (439)
Q Consensus 2 l~~i~~vde~~~~~t~~~~l~~~W~D~RL~w~~~--~~i~~i~l~~~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~v~i~ 79 (439)
+.+|.++||++|++++++|++|+|+|+||+|||. +|++.+.++.+ +||+||+++.|++++.+|.....+ +.|+
T Consensus 39 l~~i~~vde~~~~~~~~~~l~~~W~D~rL~w~~~~~~~i~~l~v~~~---~IW~PDi~~~N~~~~~~~~~~~~~--~~i~ 113 (369)
T 2bg9_C 39 LSNLISLKETDETLTTNVWMDHAWYDHRLTWNASEYSDISILRLRPE---LIWIPDIVLQNNNDGQYNVAYFCN--VLVR 113 (369)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEEEECTTTCCCCCCCCTCSCEEECGG---GSCCCCEEETTTCSSCCBSSSSCC--EEEC
T ss_pred ehhhccccccccceEEEEEEeeeeECCCcccCccccCCeeEEEecHH---hccCCcEecccccccccccccccc--EEEE
Confidence 5789999999999999999999999999999984 78999999987 999999999999998887765544 7899
Q ss_pred ecceEEEeeeceeEEeeceeeccCCcceeeeeeEEeccccccceEEEEecCCCCceeecCccccCceEEeeeEEeeeEe-
Q psy7487 80 HSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLEI- 158 (439)
Q Consensus 80 ~~G~V~~~~r~~~~~~C~~dl~~fPfD~Q~C~l~~~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~- 158 (439)
+||+|.|..|.+.++.|+||+++||||+|+|+++|+||+|+.+++++.|. .+.++...++||++.+........
T Consensus 114 ~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~i~l~~~-----~~~~~~~~~~ew~l~~~~~~~~~~~ 188 (369)
T 2bg9_C 114 PNGYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNYNANEISMDLI-----IDPEAFTENGEWEIIHKPAKKNIYG 188 (369)
T ss_dssp SSSEEEECCEEEEEECCSCGGGSSSTTCCEEEEEEEESSCCTTTCEEECC-----CGGGSCCTTSSEEEEECCEEEEECC
T ss_pred CCccEEEecCEEEEEECcCcccCCCCCceEeeEEEEEecccCceEEEEEe-----cccccceeCCEEEEeeeeEEEEEEe
Confidence 99999999999999999999999999999999999999999999999982 234456678999999887766553
Q ss_pred --ecCCCceeeEEEEEEEEeeeeEEEEeeehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhhh---------
Q psy7487 159 --SLTTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVL--------- 227 (439)
Q Consensus 159 --~~~~~~~s~l~~~~~l~R~~~~y~~~i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~~--------- 227 (439)
.+++|+|+++++++++||+++||++++++|++++++++|++||+|++ .++|+++|+|++|+|++++..
T Consensus 189 ~y~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sF~lp~~-~~~Rv~lgit~lLt~t~~~~~~~~~lP~~S 267 (369)
T 2bg9_C 189 DKFPNGTNYQDVTFYLIIRRKPLFYVINFITPCVLISFLAALAFYLPAE-SGEKMSTAICVLLAQAVFLLLTSQRLPETA 267 (369)
T ss_dssp CSSCSSCCCEEEEEEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCccEEEEEEEEEEccceeEEEEcchHHHHHHHHhheEEecCC-CCCeEEEEhHHHHHHHHHHHHHHHhCCCCc
Confidence 34588999999999999999999999999999999999999999999 599999999999999998875
Q ss_pred --hhhhhhhhhhHHHHHHHHHhhhhccce
Q psy7487 228 --SFSIDVYLGTCFVMVFASLLGNYSRLA 254 (439)
Q Consensus 228 --~~~i~~~~~~~~~~v~~slle~~~~l~ 254 (439)
+|+||+|+.+|++++++|++|+...+.
T Consensus 268 ~~vp~i~~~~~~~~~~v~~sll~~v~v~~ 296 (369)
T 2bg9_C 268 LAVPLIGKYLMFIMSLVTGVVVNCGIVLN 296 (369)
T ss_dssp HTSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHhheee
Confidence 489999999999999999999866554
No 5
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=100.00 E-value=5e-52 Score=405.00 Aligned_cols=242 Identities=22% Similarity=0.375 Sum_probs=219.6
Q ss_pred ccccccccccceeEEEEEEEEeEEeCcccccCCC-CCeeEEEeCCcccCCccccceEEeeccccceeeeeccceeEEEee
Q psy7487 2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQR-PGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIHH 80 (439)
Q Consensus 2 l~~i~~vde~~~~~t~~~~l~~~W~D~RL~w~~~-~~i~~i~l~~~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~v~i~~ 80 (439)
+.+|.++||++|++++++|++|+|+||||+|||. .+++.+.++.+ +||+||+++.|++++. ..++..+++++
T Consensus 28 l~~i~~vde~~~~~t~~~~l~~~W~D~rL~w~~~~~~i~~~~~~~~---~IW~PDi~l~N~~~~~----~~~~~~~~v~~ 100 (321)
T 3tlw_A 28 LIESYSLDDCAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEPE---AIWIPEIRFVNVENAR----DADVVDISVSP 100 (321)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEEEECGGGCCCSTTTCCSSEECCGG---GSCCCCEEESSBSSCC----EEEEEEEEECT
T ss_pred EEeecceeccCcEEEEEEEEeeEEECcccCCCCccCCeeeeccccc---CeEcCcEEeecccccc----cccceeEEEeC
Confidence 6789999999999999999999999999999984 35888888888 9999999999999886 34567799999
Q ss_pred cceEEEeeeceeEEeeceeeccCCcceeeeeeEEeccccccceEEEEecCCCCceeecCccccCceEEeeeEEeeeE--e
Q psy7487 81 SGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLE--I 158 (439)
Q Consensus 81 ~G~V~~~~r~~~~~~C~~dl~~fPfD~Q~C~l~~~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~--~ 158 (439)
||+|.|..|.+.++.|+||+++||||+|+|+++|+||+|+.+++++.|.+ ++++.+++..++||++.+....++. .
T Consensus 101 ~G~V~~~~~~~~~~~C~~dl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~--~~~~~~~~~~~~ew~l~~~~~~~~~~~~ 178 (321)
T 3tlw_A 101 DGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVLAVDL--EKVGKNDDVFLTGWDIESFTAVVKPANF 178 (321)
T ss_dssp TCEEEEEEEEEEEEECCCCCTTTTSCEEEEEEEEEEECCSSCCEEEEECG--GGCEECTTCCBTTEEEEEEEEEEEEEEE
T ss_pred CccEEEecceEEEEEEEeecccCCCCceeEeEEEecccCChhhEEEEEcC--CcccccccccccceEEEeeEeEEeeEEe
Confidence 99999999999999999999999999999999999999999999999985 3566677888999999998876543 4
Q ss_pred ecCCCceeeEEEEEEEEeeeeEEEEeeehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhhh----------h
Q psy7487 159 SLTTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVL----------S 228 (439)
Q Consensus 159 ~~~~~~~s~l~~~~~l~R~~~~y~~~i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~~----------~ 228 (439)
.+++|+|+++++++++||+++||++++++|++++++++|++|| |+++ ++|+++|+|++|++++++.. +
T Consensus 179 ~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~li~~ls~~sF~-p~~~-~~Rv~l~it~lL~~t~~~~~~~~~lP~~s~v 256 (321)
T 3tlw_A 179 ALEDRLESKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW-STSY-EANVTLVVSTLIAHIAFNILVETCLPKTPYM 256 (321)
T ss_dssp EETTEEEEEEEEEEEEEECCTTHHHHTHHHHHHHHHHHGGGGG-CCCH-HHHHHHHHHHHHHHHHHHHHHCCCCCCCSSC
T ss_pred cCCCCceeEEEEEEEEEEeeceeehhHHHHHHHHHHHhheeec-cCCC-CCcEEEEhhHHHHHHHHHHHHHhhCCCcccc
Confidence 4578999999999999999999999999999999999999999 6654 89999999999999999886 4
Q ss_pred hhhhhhhhhHHHHHHHHHhhhhccce
Q psy7487 229 FSIDVYLGTCFVMVFASLLGNYSRLA 254 (439)
Q Consensus 229 ~~i~~~~~~~~~~v~~slle~~~~l~ 254 (439)
|+||+|+++|++++++|++|+.....
T Consensus 257 p~i~~~~~~~~~~v~~sll~~v~v~~ 282 (321)
T 3tlw_A 257 TYTGAIIFMIYLFYFVAVIEVTVQHY 282 (321)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 89999999999999999999855544
No 6
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=100.00 E-value=1.2e-52 Score=416.51 Aligned_cols=245 Identities=18% Similarity=0.341 Sum_probs=221.9
Q ss_pred ccccccccccceeEEEEEEEEeEEeCcccccCCC--CCeeEEEeCCcccCCccccceEEeeccccceeeeeccceeEEEe
Q psy7487 2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQR--PGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIH 79 (439)
Q Consensus 2 l~~i~~vde~~~~~t~~~~l~~~W~D~RL~w~~~--~~i~~i~l~~~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~v~i~ 79 (439)
+.+|.++||++|++++++|++|+|+||||+|||. +|++.+.++.+ +||+||+++.|++++++|... +..++++
T Consensus 37 l~~i~~vde~~~~~~~~~~l~~~W~D~rL~w~p~~~~~i~~l~v~~~---~IW~PDi~~~N~~~~~~~~~~--~~~~~i~ 111 (370)
T 2bg9_A 37 LIQLINVDEVNQIVETNVRLRQQWIDVRLRWNPADYGGIKKIRLPSD---DVWLPDLVLYNNADGDFAIVH--MTKLLLD 111 (370)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEEECCTTSCCCTTTHHHHSSEEEEGG---GSCCCCEEETTCCCSCEESCS--SCEEEEC
T ss_pred ehHhhcchhhccceEEEEEEeeeeECCCccCChhhcCCccEEEechh---hccCCcEeccccccccccccc--cceEEEE
Confidence 5789999999999999999999999999999985 67889999987 999999999999998877654 3569999
Q ss_pred ecceEEEeeeceeEEeeceeeccCCcceeeeeeEEeccccccceEEEEecCCCCceeecCccccCceEEeeeEEeeeEee
Q psy7487 80 HSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLEIS 159 (439)
Q Consensus 80 ~~G~V~~~~r~~~~~~C~~dl~~fPfD~Q~C~l~~~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~~ 159 (439)
+||+|.|..|.+.++.|+||+++||||+|+|+++|+||+|+.+++++.|.++ .++.++...++||++.+....+....
T Consensus 112 ~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~--~~~~~~~~~~~ew~l~~~~~~~~~~~ 189 (370)
T 2bg9_A 112 YTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTYDGTKVSISPESD--RPDLSTFMESGEWVMKDYRGWKHWVY 189 (370)
T ss_dssp SSCCEEECCEEEEEEECCCCTTSSSSSCEEEEEEEEESSCCTTTEEEECCCC--CCSTTSCCTTCSSEEEEEEEEEEECC
T ss_pred CCeeEEEecceEEEEECCCCcCCCCCCcceeeEEEEEecccCcEEEEEecCC--CcccccccccceEEEEcceEEEEEEe
Confidence 9999999999999999999999999999999999999999999999998763 45566677899999999877665544
Q ss_pred cC--C-CceeeEEEEEEEEeeeeEEEEeeehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhhh---------
Q psy7487 160 LT--T-GNYSRLACEIQFVRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVL--------- 227 (439)
Q Consensus 160 ~~--~-~~~s~l~~~~~l~R~~~~y~~~i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~~--------- 227 (439)
+. + |+|+++++++++||+++||.+++++|++++++++|++||+|+++ ++|+++|+|++|+|++++..
T Consensus 190 y~~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sF~lp~~~-~~Rv~lgit~lLt~t~~~~~~~~~lP~~S 268 (370)
T 2bg9_A 190 YTCCPDTPYLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDS-GEKMTLSISVLLSLTVFLLVIVELIPSTS 268 (370)
T ss_dssp CSSSSSCCCEEEEEEEEEECCCTHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCeeEEEEEEEEEEccchhhhhhhhHHHHHHHHHHHheecCCCC-CCeEEEeHHHHHHHHHHHHHHHhhCCCCc
Confidence 43 3 78999999999999999999999999999999999999999998 89999999999999998875
Q ss_pred --hhhhhhhhhhHHHHHHHHHhhhhccce
Q psy7487 228 --SFSIDVYLGTCFVMVFASLLGNYSRLA 254 (439)
Q Consensus 228 --~~~i~~~~~~~~~~v~~slle~~~~l~ 254 (439)
+|+||+|+++|++++++|++|+...+.
T Consensus 269 ~~vp~i~~~~~~~~~~v~~sl~~~~~v~~ 297 (370)
T 2bg9_A 269 SAVPLIGKYMLFTMIFVISSIIVTVVVIN 297 (370)
T ss_dssp HHSCCCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 489999999999999999999865544
No 7
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A
Probab=100.00 E-value=2.2e-52 Score=423.43 Aligned_cols=248 Identities=17% Similarity=0.339 Sum_probs=223.4
Q ss_pred ccccccccccceeEEEEEEEEeEEeCcccccCCC--CCeeEEEeCCcccCCccccceEEeeccccceeeeeccceeEEEe
Q psy7487 2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQR--PGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIH 79 (439)
Q Consensus 2 l~~i~~vde~~~~~t~~~~l~~~W~D~RL~w~~~--~~i~~i~l~~~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~v~i~ 79 (439)
+.+|.++||++|++++++|++|+|+|+||+|||. +|++.+.++++ +||+||+++.|+++++++..... .++|+
T Consensus 61 l~~i~~vdE~~q~~t~~~~l~~~W~D~rL~Wnp~~y~gi~~l~vp~~---~IW~PDi~l~N~~d~~~~~~~~~--~v~v~ 135 (461)
T 4aq5_A 61 LIQLINVDEVNQIVETNVRLRQQWIDVRLRWNPADYGGIKKIRLPSD---DVWLPDLVLYNNADGDFAIVHMT--KLLLD 135 (461)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEEECCTTCBCCTTTHHHHSSEEEEGG---GSCCCCEEESSCCCSCCTTCSSC--EEEEC
T ss_pred EeeehhhhccceEEEEEEEEeeeeECcccCCChhhcCCccEEEecCC---CEECCceeeeccccccccccccc--ceEEc
Confidence 5789999999999999999999999999999985 68899999987 99999999999999887754333 48999
Q ss_pred ecceEEEeeeceeEEeeceeeccCCcceeeeeeEEeccccccceEEEEecCCCCceeecCccccCceEEeeeEEeeeEee
Q psy7487 80 HSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLEIS 159 (439)
Q Consensus 80 ~~G~V~~~~r~~~~~~C~~dl~~fPfD~Q~C~l~~~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~~ 159 (439)
+||+|.|..|.+.++.|+||+++||||+|+|+++|+||+|+.+++++.|.. +.++.++...++||++.+....+....
T Consensus 136 ~dG~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~--~~~~l~~~~~~~eW~l~~~~~~~~~~~ 213 (461)
T 4aq5_A 136 YTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTYDGTKVSISPES--DRPDLSTFMESGEWVMKDYRGWKHWVY 213 (461)
T ss_dssp SBCCEEECCEEEEEEECCCCGGGSSSSCEEEEEEEEESSCCTTTEEEECCC--CCCSGGGCCTTCSSEEEEEEEEEEECC
T ss_pred CCccEEEeccccccccccccccCCCCccCccCeEEeccccCCceEEEEecc--ccccHHhhhccCceEEeeeeeEEEEEe
Confidence 999999999999999999999999999999999999999999999999865 345666677899999999877665544
Q ss_pred c--CCC-ceeeEEEEEEEEeeeeEEEEeeehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhhh---------
Q psy7487 160 L--TTG-NYSRLACEIQFVRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVL--------- 227 (439)
Q Consensus 160 ~--~~~-~~s~l~~~~~l~R~~~~y~~~i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~~--------- 227 (439)
+ ++| +|+++++++++||+++||++++++|++++++++|++||+|++++ +|+++|+|++|++++++..
T Consensus 214 y~~~~~~~y~~l~~~~~l~R~~~~Y~i~l~iP~~liv~ls~lsF~Lp~~s~-eRv~LgiT~LLt~tvfl~~v~~~LP~tS 292 (461)
T 4aq5_A 214 YTCCPDTPYLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDSG-EKMTLSISVLLSLTVFLLVIVELIPSTS 292 (461)
T ss_dssp CSSSSSCCCEEEEEEEEEECCCTHHHHHHHHHHHHHHHHHHHHHHHHHHCG-GGTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCcCCCCcceEEEEEEEEecccceeeehhhhHHHHHHHHHheEecccccc-ceeehhHHHHHHHHHHHHHHHhhcCccc
Confidence 3 446 89999999999999999999999999999999999999999985 9999999999999998876
Q ss_pred --hhhhhhhhhhHHHHHHHHHhhhhccceeeE
Q psy7487 228 --SFSIDVYLGTCFVMVFASLLGNYSRLACEI 257 (439)
Q Consensus 228 --~~~i~~~~~~~~~~v~~slle~~~~l~~~~ 257 (439)
+|+||+|+++|++++++|++|+...+..+.
T Consensus 293 ~~vplI~~y~~~~m~~v~~sll~tv~Vl~l~~ 324 (461)
T 4aq5_A 293 SAVPLIGKYMLFTMIFVISSIIVTVVVINTHH 324 (461)
T ss_dssp HHSCCCGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHhhheeeec
Confidence 389999999999999999999866655443
No 8
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E
Probab=100.00 E-value=3.8e-52 Score=424.90 Aligned_cols=251 Identities=19% Similarity=0.356 Sum_probs=222.5
Q ss_pred ccccccccccceeEEEEEEEEeEEeCcccccCC--CCCeeEEEeCCcccCCccccceEEeeccccceeeeeccceeEEEe
Q psy7487 2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQ--RPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIH 79 (439)
Q Consensus 2 l~~i~~vde~~~~~t~~~~l~~~W~D~RL~w~~--~~~i~~i~l~~~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~v~i~ 79 (439)
+.+|.++||++|++++++|++|+|+|+||+||| ++|++.+.++.+ +||+||+++.|++++.+|.....| +.|+
T Consensus 36 l~~I~~VdE~~q~~t~~v~l~~~W~D~rL~Wnp~~y~gi~~l~v~~~---~IW~PDi~l~N~~d~~~~~~~~~n--v~v~ 110 (488)
T 4aq5_E 36 LTNLISLNEKEEALTTNVWIEIQWNDYRLSWNTSEYEGIDLVRIPSE---LLWLPDVVLENNVDGQFEVAYYAN--VLVY 110 (488)
T ss_dssp EEEECCCBTTTTBEEEEEEEEEEEECCTTCCCTTTTTTCSCCCCCTT---SSCCCCEECSSSCCSCCBSCSSSC--CCBC
T ss_pred EeeeeccccccceeeeeeeeeeEEECcccCcCchhcCCceEEecCcc---CEECCceehhcccccccccccccc--EEEe
Confidence 678999999999999999999999999999998 478999999987 999999999999999888766555 5699
Q ss_pred ecceEEEeeeceeEEeeceeeccCCcceeeeeeEEeccccccceEEEEecCCCC------ceeecCccccCceEEeeeEE
Q psy7487 80 HSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPN------SVGVSNEVSLPQFKVLGHRQ 153 (439)
Q Consensus 80 ~~G~V~~~~r~~~~~~C~~dl~~fPfD~Q~C~l~~~S~~y~~~~v~l~~~~~~~------~~~~~~~~~~~~w~l~~~~~ 153 (439)
+||+|.|..|.+.++.|+||+++||||+|+|+++|+||+|+.+++++.|..++. .++.++...++||++.+...
T Consensus 111 ~~G~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~~~d~~~~~~~~eW~l~~~~~ 190 (488)
T 4aq5_E 111 NDGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQTYNAHEVNLQLSAEEGEVVEWIHIDPEDFTENGEWTIRHRPA 190 (488)
T ss_dssp TTSEEEECCEEBCEECCCCSSSSSSSSCCCCCEEEEESSSCSSSCCEECCCSCC-------CGGGSCCTTCSEEEEECCC
T ss_pred CCceEEEecceeEEeecccccccCCCcCceeeEEeeeeccccceEEEEeccCCCcceeeeeccHHHccccceEEEEeeEE
Confidence 999999999999999999999999999999999999999999999999986431 12334556789999988765
Q ss_pred eeeEe-e--cCCCceeeEEEEEEEEeeeeEEEEeeehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhhh---
Q psy7487 154 KDLEI-S--LTTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVL--- 227 (439)
Q Consensus 154 ~~~~~-~--~~~~~~s~l~~~~~l~R~~~~y~~~i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~~--- 227 (439)
..... . ++++.|+++++++++||+++||++++++||+++++++|++||+|+++.++|+++|+|+||++++++.+
T Consensus 191 ~~~~~~~~~~~~~~y~~l~~~~~lrR~~~~Y~i~l~iP~~liv~Ls~lsF~Lp~~a~~eRvsLgIt~LLt~tvfl~~v~~ 270 (488)
T 4aq5_E 191 KKNYNWQLTKDDIDFQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQ 270 (488)
T ss_dssp EEECCCCTTCCCSCCCEEEECCEEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHHSCSTHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeeeccCCCCCcceEEEEEEEccchhheehhHhHHHHHHHHHHHHHhcCCccccCceEEEehHHHHHHHHHHHHHHh
Confidence 44322 1 23567999999999999999999999999999999999999999998899999999999999999875
Q ss_pred --------hhhhhhhhhhHHHHHHHHHhhhhccceeeE
Q psy7487 228 --------SFSIDVYLGTCFVMVFASLLGNYSRLACEI 257 (439)
Q Consensus 228 --------~~~i~~~~~~~~~~v~~slle~~~~l~~~~ 257 (439)
+|+||+|+++|++++++|++++...+..+.
T Consensus 271 ~LP~tS~~vPlI~~y~~~~m~lv~~Sll~tv~Vlnl~~ 308 (488)
T 4aq5_E 271 KVPETSLNVPLIGKYLIFVMFVSLVIVTNCVIVLNVSL 308 (488)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hCCccccCccHHHHHHHHHHHHHHHHHHHHhhEEEEEc
Confidence 489999999999999999999977665554
No 9
>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C
Probab=100.00 E-value=2.5e-51 Score=421.81 Aligned_cols=250 Identities=20% Similarity=0.372 Sum_probs=219.4
Q ss_pred ccccccccccceeEEEEEEEEeEEeCcccccCC--CCCeeEEEeCCcccCCccccceEEeeccccceeeeeccceeEEEe
Q psy7487 2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQ--RPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIH 79 (439)
Q Consensus 2 l~~i~~vde~~~~~t~~~~l~~~W~D~RL~w~~--~~~i~~i~l~~~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~v~i~ 79 (439)
+.+|.++||++|++++++|++|+|+|+||+||| ++|++.+.++.+ +||+||+++.|++++.+|.....| +.|+
T Consensus 60 l~~I~~VdE~~q~~t~~vwl~q~W~D~RL~Wnp~~y~gi~~l~vp~~---~IW~PDi~l~N~~d~~~~~~~~~n--v~V~ 134 (522)
T 4aq5_C 60 LSNLISLKETDETLTTNVWMDHAWYDHRLTWNASEYSDISILRLRPE---LIWIPDIVLQNNNDGQYNVAYFCN--VLVR 134 (522)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEEEECTTCCCCCCCCCTCSCEEECGG---GSCCCCEEETTTCSSCCBSCSSCC--EEEC
T ss_pred eeecccccccccEEEEEEEEeeeEeCcccCCCchhcCCceEEeeccC---CEECCcEeccccccCCccccccce--EEEe
Confidence 578999999999999999999999999999998 478999999998 999999999999999888765555 6799
Q ss_pred ecceEEEeeeceeEEeeceeeccCCcceeeeeeEEeccccccceEEEEecCCCC----------ceeecCccccCceEEe
Q psy7487 80 HSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPN----------SVGVSNEVSLPQFKVL 149 (439)
Q Consensus 80 ~~G~V~~~~r~~~~~~C~~dl~~fPfD~Q~C~l~~~S~~y~~~~v~l~~~~~~~----------~~~~~~~~~~~~w~l~ 149 (439)
+||+|.|..|.+.++.|+||+++||||+|+|+++|+||+|+.+++++.|..++. .++.++...++||++.
T Consensus 135 ~dG~V~~~~~~~~~ssC~mdl~~FPfD~Q~C~L~f~S~~Y~~~~v~l~~~~~~~~~~~~~~~~~~~d~~~f~~~gEW~l~ 214 (522)
T 4aq5_C 135 PNGYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNYNANEISMDLMTDTIDGKDYPIEWIIIDPEAFTENGEWEII 214 (522)
T ss_dssp SSSEEEECCEEEEEECCCCTTTSCSTTCCEEEEEEEETTCCTTTCCEEC---------------CCSTTSCCTTCSEEEE
T ss_pred CCccEEEEcccccccccccccCcCCCcCceEeEEEecccccCceeEEEeccCcccccCccceeeeccHHHceecceEEEe
Confidence 999999999999999999999999999999999999999999999999976421 1233445678999998
Q ss_pred eeEEeeeEe-e--cCCCceeeEEEEEEEEeeeeEEEEeeehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhh
Q psy7487 150 GHRQKDLEI-S--LTTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQV 226 (439)
Q Consensus 150 ~~~~~~~~~-~--~~~~~~s~l~~~~~l~R~~~~y~~~i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~ 226 (439)
+........ . ++++.|+++++++++||+++||++++++||+++++++|++||+|++ .++|+++|+|+||++++++.
T Consensus 215 ~~~~~~~~~~~~~~~~~~y~~l~~~~~lrR~~~~Yii~l~iP~~liv~Ls~lsF~Lp~d-~~eRisLgIT~LLt~tvfl~ 293 (522)
T 4aq5_C 215 HKPAKKNIYGDKFPNGTNYQDVTFYLIIRRKPLFYVINFITPCVLISFLAALAFYLPAE-SGEKMSTAICVLLAQAVFLL 293 (522)
T ss_dssp ECCEEEEECCCSSCSSCCCEEEEEEEEEEECCSSHHHHHHHHHHHHHHHHHHHTTHHHH-HTTCHHHHHHHHHHHHHHHH
T ss_pred eeEEEEEeeeccccCCCCcceEEEEEEEecccceeeeehhhHHHHHHHHHHheeecCCC-cCceEEehHHHHHHHHHHHH
Confidence 876554432 1 2356799999999999999999999999999999999999999999 69999999999999999987
Q ss_pred h-----------hhhhhhhhhhHHHHHHHHHhhhhccceeeE
Q psy7487 227 L-----------SFSIDVYLGTCFVMVFASLLGNYSRLACEI 257 (439)
Q Consensus 227 ~-----------~~~i~~~~~~~~~~v~~slle~~~~l~~~~ 257 (439)
+ +|+||+|+++|++++++|++++.-.+..+.
T Consensus 294 ~v~~~LP~tS~~vPlI~~y~~~~m~lv~lSll~tviVlnl~~ 335 (522)
T 4aq5_C 294 LTSQRLPETALAVPLIGKYLMFIMSLVTGVVVNCGIVLNFHF 335 (522)
T ss_dssp HHHHHHHHHTTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHhcCCcccCCccHHHHHHHHHHHHHHHHHHHHheEEEEEc
Confidence 6 489999999999999999999976665544
No 10
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A*
Probab=100.00 E-value=7e-51 Score=397.09 Aligned_cols=244 Identities=24% Similarity=0.362 Sum_probs=212.8
Q ss_pred ccccccccccceeEEEEEEEEeEEeCcccccCCCCCeeEEEeCCcc-----cCCccccceEEeeccccceeeeeccceeE
Q psy7487 2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDF-----IKNIWVPDTFFVNEKQSYFHIATTSNEFI 76 (439)
Q Consensus 2 l~~i~~vde~~~~~t~~~~l~~~W~D~RL~w~~~~~i~~i~l~~~~-----~~~IW~Pdi~~~N~~~~~~~~~~~~~~~v 76 (439)
+.+|.++||++|++++++|++|+|+|+||+|+ |++.+.++.++ .++||+||+++.|++++.+ .++..+
T Consensus 20 l~~i~~vde~~~~~t~~~~l~~~W~D~rL~~~---~~~~l~l~~~~~~~ip~~~IW~Pdi~l~N~~~~~~----~~~~~~ 92 (322)
T 3rqw_A 20 INKIYGVNTLEQTYKVDGYIVAQWTGKPRKTP---GDKPLIVENTQIERWINNGLWVPALEFINVVGSPD----TGNKRL 92 (322)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEEEECSCCCCS---TTSCEEEETHHHHHHHHTTCCCCCEEETTBSSCCE----EEEEEE
T ss_pred EEeeccccccCcEEEEEEEEeeEEechhhCCC---CCCceeecchhhcccccccccCCcEEEEcccCccc----ccceeE
Confidence 67899999999999999999999999999995 55667665433 4599999999999999876 456679
Q ss_pred EEeecceEEEeeeceeEEeeceeeccCCcceeeeeeEEeccccccceEEEEecCCCCceeecCccccCceEE-eeeEEe-
Q psy7487 77 RIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKV-LGHRQK- 154 (439)
Q Consensus 77 ~i~~~G~V~~~~r~~~~~~C~~dl~~fPfD~Q~C~l~~~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~~w~l-~~~~~~- 154 (439)
++++||+|.|..|.+.++.|+||+++||||+|+|+++|+||+|+.+++++.|+++......+ + +++||++ .+....
T Consensus 93 ~i~~~G~V~~~~~~~~~~~C~~dl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~-~-~~~ew~l~~~~~~~~ 170 (322)
T 3rqw_A 93 MLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQFVLELEPFSYNNQQLRFSDIQVYTENIDN-E-EIDEWWIRGKASTHI 170 (322)
T ss_dssp EECTTSEEEEEEEEEEEEECCCCCTTTTSCEEEEEEEEEESSCSSEEEEEEEEECCSCSSSS-C-SSSSEEECCSCEECC
T ss_pred EEeCCcCEEEeeceeEEEeccccccCCCCCCcEEEEEEEEcccCcceEEEEECCCcccccCC-C-CCCceEEEeeeEEEe
Confidence 99999999999999999999999999999999999999999999999999997543112222 3 7899999 888776
Q ss_pred -----eeEee--cCCCceeeEEEEEEEEeeeeEEEEeeehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhhh
Q psy7487 155 -----DLEIS--LTTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVL 227 (439)
Q Consensus 155 -----~~~~~--~~~~~~s~l~~~~~l~R~~~~y~~~i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~~ 227 (439)
++... +++|+|+++++++++||+++||.+++++|++++++++|++||+| +.++|+++|+|++|++++++..
T Consensus 171 ~~~~y~~~~~~~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~li~~ls~~sF~lp--~~~~Rv~l~it~lL~~~~~~~~ 248 (322)
T 3rqw_A 171 SDIRYDHLSSVQPNQNEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWLE--SFSERLQTSFTLMLTVVAYAFY 248 (322)
T ss_dssp EEEECTTSCCSSSSCCEEEEEEEEEEEEECCHHHHHHTHHHHHHHHHHHHGGGGCS--SHHHHHHHHHHHHHHHHHHHHH
T ss_pred eccccceeeeccCCCCCeEEEEEEEEEEEeeeeeeehHHHHHHHHHHHHHHHhccC--CCCCcEEEEEehHHHHHHHHHH
Confidence 33322 34789999999999999999999999999999999999999999 4599999999999999999886
Q ss_pred ----------hhhhhhhhhhHHHHHHHHHhhhhccceee
Q psy7487 228 ----------SFSIDVYLGTCFVMVFASLLGNYSRLACE 256 (439)
Q Consensus 228 ----------~~~i~~~~~~~~~~v~~slle~~~~l~~~ 256 (439)
+|+||+|+++|++++++|++|+...+..+
T Consensus 249 ~~~~lP~~s~vp~i~~~~~~~~~~v~~sll~~~~v~~l~ 287 (322)
T 3rqw_A 249 TSNILPRLPYTTVIDQMIIAGYGSIFAAILLIIFAHHRQ 287 (322)
T ss_dssp HHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HhhhCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999986555433
No 11
>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B
Probab=100.00 E-value=9.2e-52 Score=422.59 Aligned_cols=248 Identities=23% Similarity=0.414 Sum_probs=220.8
Q ss_pred ccccccccccceeEEEEEEEEeEEeCcccccCC--CCCeeEEEeCCcccCCccccceEEeeccccceeeeeccceeEEEe
Q psy7487 2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQ--RPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIH 79 (439)
Q Consensus 2 l~~i~~vde~~~~~t~~~~l~~~W~D~RL~w~~--~~~i~~i~l~~~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~v~i~ 79 (439)
+.+|.++||++|++++++|++|+|+|+||+||| ++|++.++++.+ +||+||+++.|++++.++.....+ +.|+
T Consensus 61 l~~i~~vdE~~q~~t~~v~l~~~W~D~rL~Wnp~~y~gi~~l~v~~~---~IW~PDi~l~N~~d~~~~~~~~~n--v~v~ 135 (493)
T 4aq5_B 61 LTSLLILNEKNEEMTTSVFLNLAWTDYRLQWDPAAYEGIKDLSIPSD---DVWQPDIVLMNNNDGSFEITLHVN--VLVQ 135 (493)
T ss_dssp EEEEEEEETTTTEEEEEEECEEEEECTTCCCCHHHHSSCSCEEECSC---SSCCCCCEESSCCCSCEESSSSSC--EEEC
T ss_pred EeeeeeccccceEEEEEEEeecceECcccCCChhhcCCeeEEecccc---cCccCcEEEecccccccccccccc--eEEe
Confidence 678999999999999999999999999999998 479999999988 999999999999999887665555 7799
Q ss_pred ecceEEEeeeceeEEeeceeeccCCcceeeeeeEEeccccccceEEEEecCCCC--------ceeecCccccCceEEeee
Q psy7487 80 HSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPN--------SVGVSNEVSLPQFKVLGH 151 (439)
Q Consensus 80 ~~G~V~~~~r~~~~~~C~~dl~~fPfD~Q~C~l~~~S~~y~~~~v~l~~~~~~~--------~~~~~~~~~~~~w~l~~~ 151 (439)
+||+|.|..|.+.++.|+||+++||||+|+|+++|+||+|+.+++++.|..++. .++.++...++||++.+.
T Consensus 136 ~~G~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~l~~f~~~~eW~l~~~ 215 (493)
T 4aq5_B 136 HTGAVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSYTYDTSEVILQHALDAKGEREVKEIMINQDAFTENGQWSIEHK 215 (493)
T ss_dssp TTSEEEECCEEEEEECCSCTTCSSSTTCCCCEEEEECSSCCBTSCEEECCCCC---------CCSGGGCCTTCSSBCCCC
T ss_pred cCCCEEEeeeeeeeecccccccCCCccceeEEEEEeeecCccccEEEEeccCCCCccceecccccHHHhccccceeeeee
Confidence 999999999999999999999999999999999999999999999999965431 233445567889999887
Q ss_pred EEeeeEeecCCCceeeEEEEEEEEeeeeEEEEeeehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhhh----
Q psy7487 152 RQKDLEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVL---- 227 (439)
Q Consensus 152 ~~~~~~~~~~~~~~s~l~~~~~l~R~~~~y~~~i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~~---- 227 (439)
........+ +++|+++++++++||+++||++++++||+++++++|++||+|+++ ++|+++|+|++|++++++..
T Consensus 216 ~~~~~~~~~-~~~y~~l~~~~~lrR~~~~Y~i~l~iP~~liv~Ls~lsF~Lp~~s-~eRvsLgiT~LLt~tvfl~~v~~~ 293 (493)
T 4aq5_B 216 PSRKNWRSD-DPSYEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPDA-GEKMSLSISALLALTVFLLLLADK 293 (493)
T ss_dssp CCEECCCTT-SSSBCCEEEECCCBCCCCSSTTTTHHHHHHHHHHHHHHHHSTTTC-GGGGTHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeecC-CCCccEEEEEEEEEeccceeeehhhhhHHHHHHHHHhEEecCCCC-CceEEehHHHHHHHHHHHHHHHhc
Confidence 665443333 348999999999999999999999999999999999999999997 89999999999999998876
Q ss_pred -------hhhhhhhhhhHHHHHHHHHhhhhccceee
Q psy7487 228 -------SFSIDVYLGTCFVMVFASLLGNYSRLACE 256 (439)
Q Consensus 228 -------~~~i~~~~~~~~~~v~~slle~~~~l~~~ 256 (439)
+|+||+|+++|++++++|++++...+..+
T Consensus 294 LP~tS~~vPlI~~y~~~~m~~v~lsll~tv~Vl~l~ 329 (493)
T 4aq5_B 294 VPETSLSVPIIISYLMFIMILVAFSVILSVVVLNLH 329 (493)
T ss_dssp TTTTTTSSCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccCCCchHhHHHHHHHHHHHHHHHHHhheeee
Confidence 38999999999999999999996665544
No 12
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B
Probab=100.00 E-value=1.5e-38 Score=291.07 Aligned_cols=170 Identities=18% Similarity=0.304 Sum_probs=154.0
Q ss_pred ccccccccccceeEEEEEEEEeEEeCcccccCCC--CCeeEEEeCCcccCCccccceEEeeccccceeeeeccceeEEEe
Q psy7487 2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQR--PGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIH 79 (439)
Q Consensus 2 l~~i~~vde~~~~~t~~~~l~~~W~D~RL~w~~~--~~i~~i~l~~~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~v~i~ 79 (439)
+.+|.++||++|++++++|++|+|+|+||+|||. +|++.+.++.+ +||+||+++.|++++.++.... ..++|+
T Consensus 38 l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~w~~~~~~~i~~l~~~~~---~iW~PDi~~~N~~~~~~~~~~~--~~~~v~ 112 (212)
T 2qc1_B 38 LIQLINVDEVNQIVTTNVRLKQQWVDYNLKWNPDDYGGVKKIHIPSE---KIWRPDVVLYNNADGDFAIVKF--TKVLLD 112 (212)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEEEECTTCCCCGGGGTTCCEEEECGG---GSCCCCEEECCBTTTSSCEECC--CCEEEE
T ss_pred EecccccccCCcEEEEEEEEeeEEECCCcccChhhcCCeeEEEcchh---hccCCceeccccccccccccce--eeEEEE
Confidence 5789999999999999999999999999999984 78999999987 9999999999999988876644 459999
Q ss_pred ecceEEEeeeceeEEeeceeeccCCcceeeeeeEEeccccccceEEEEecCCCCceeecCccccCceEEeeeEEeeeEee
Q psy7487 80 HSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLEIS 159 (439)
Q Consensus 80 ~~G~V~~~~r~~~~~~C~~dl~~fPfD~Q~C~l~~~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~~ 159 (439)
+||+|.|..|++.++.|+||+++||||+|+|+++|+||+|+.+++++.|..+ .+..++...++||++.+.....+...
T Consensus 113 ~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~--~~~~~~~~~~~ew~l~~~~~~~~~~~ 190 (212)
T 2qc1_B 113 YTGHITWTPPAIFKSYCEIIVTHFPFDEQNCSMKLGTRTYDGSAVAINPESD--QPDLSNFMESGEWVIKEARGWKHWVF 190 (212)
T ss_dssp TTCEEEECCEEEEEEEEEECCSSSSCCEEEEEEEEEESSCCTTTEEEEESCS--SCBCTTCCCCSSEEEEEEEEEEEEEE
T ss_pred CCeeEEEEeeeEEEEEccceeecCCCCceEEeEEEEcccccCceEEEEeccc--ccchhhCccCCCEEEEEeEEEEEEEe
Confidence 9999999999999999999999999999999999999999999999999864 46667778899999999988776554
Q ss_pred cC--C-CceeeEEEEEEEEeee
Q psy7487 160 LT--T-GNYSRLACEIQFVRSM 178 (439)
Q Consensus 160 ~~--~-~~~s~l~~~~~l~R~~ 178 (439)
+. + |+|++++++|++||+|
T Consensus 191 y~~~~~~~y~~i~~~~~l~R~p 212 (212)
T 2qc1_B 191 YSCCPTTPYLDITYHFVMQRLP 212 (212)
T ss_dssp ETTCSSCCEEEEEEEEEEEECC
T ss_pred cCCCCCCCeeEEEEEEEEEECc
Confidence 43 4 8999999999999986
No 13
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus}
Probab=100.00 E-value=5.2e-38 Score=284.18 Aligned_cols=171 Identities=22% Similarity=0.307 Sum_probs=141.7
Q ss_pred ccccccccccceeEEEEEEEEeEEeCcccccCCC-CCeeEEEeCCcccCCccccceEEeeccccceeeeeccceeEEEee
Q psy7487 2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQR-PGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIHH 80 (439)
Q Consensus 2 l~~i~~vde~~~~~t~~~~l~~~W~D~RL~w~~~-~~i~~i~l~~~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~v~i~~ 80 (439)
|.+|.++||++|++++++|++|+|+|+||+|||. +|++.+.++.+ +||+||+++.|+++... ..+..++|++
T Consensus 24 l~~i~~vdE~~~~~t~~~~l~~~W~D~rL~w~~~~~~i~~~~~~~~---~IW~PDi~l~N~~~~~~----~~~~~v~v~~ 96 (201)
T 3igq_A 24 LIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEPE---AIWIPEIRFVNVENARD----ADVVDISVSP 96 (201)
T ss_dssp EEEEECCCTTSSEEEEEEEEEEEEECGGGCCCHHHHTCSCEECCGG---GSCCCCEEESSBSSSCE----EEEEEEEECT
T ss_pred eeecccCcccCCEEEEEEEEeeEEECCccCCCCcCCCEeEeccccc---CcCccCEEEEccccccc----ccceEEEEeC
Confidence 6789999999999999999999999999999984 57888999988 99999999999987642 3466799999
Q ss_pred cceEEEeeeceeEEeeceeeccCCcceeeeeeEEeccccccceEEEEecCCCCceeecCccccCceEEeeeEEeeeEe--
Q psy7487 81 SGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLEI-- 158 (439)
Q Consensus 81 ~G~V~~~~r~~~~~~C~~dl~~fPfD~Q~C~l~~~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~-- 158 (439)
||+|.|..|++.++.|+||+++||||+|+|+++|+||+|+.+++++.|.+ ..+..+++..++||++.+....+...
T Consensus 97 ~G~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~--~~~~~~~~~~~~ew~l~~~~~~~~~~~y 174 (201)
T 3igq_A 97 DGTVQYLERFSARVLSPLDGRRTESDSQTLHIYLIVRSVDTRNIVLAVDL--EKVGKNDDVFLTGWDIESFTAVVKPANF 174 (201)
T ss_dssp TCEEEEEEEEEEEEECCCC------CEEEEEEEEEECCCSSCCEEEEECG--GGCEESCSEEETTEEEEEEEEEEEC---
T ss_pred CCcEEEecceeEEEecCcccccCCCCccEeeEEEeccCCCceEEEEEecC--CccccccCcccCCeEEEeeEEEEEEEEe
Confidence 99999999999999999999999999999999999999999999999975 45677788899999999998876553
Q ss_pred ecCCCceeeEEEEEEEEeeeeEE
Q psy7487 159 SLTTGNYSRLACEIQFVRSMGYY 181 (439)
Q Consensus 159 ~~~~~~~s~l~~~~~l~R~~~~y 181 (439)
.+++++|+++++++.+||+-+.+
T Consensus 175 ~cc~~~y~~i~f~i~irR~~~~~ 197 (201)
T 3igq_A 175 ALEDRLESKLDYQLRISRQGGHH 197 (201)
T ss_dssp -----CCCEEEEEEEEEEC----
T ss_pred CCCCCccCeEEEEEEEEECCCCC
Confidence 45678999999999999998764
No 14
>4aoe_A Acetylcholine-binding protein type 2; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholin receptor; 5.80A {Biomphalaria glabrata}
Probab=100.00 E-value=1.8e-37 Score=280.56 Aligned_cols=165 Identities=17% Similarity=0.351 Sum_probs=148.0
Q ss_pred ccccccccccceeEEEEEEEEeEEeCcccccCC-CCCeeEEEeCCcccCCccccceEEeeccccceeeeeccceeEEEee
Q psy7487 2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQ-RPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIHH 80 (439)
Q Consensus 2 l~~i~~vde~~~~~t~~~~l~~~W~D~RL~w~~-~~~i~~i~l~~~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~v~i~~ 80 (439)
|.+|.++||++|++++++|++|+|+|+||+||| ++|++.+.++++ +||+||+++.|+++...+ ..+..++|++
T Consensus 37 l~~i~~vde~~q~~~~~~wl~~~W~D~rL~W~~~~~~i~~i~v~~~---~IW~PDi~l~N~~~~~~~---~~~~~v~v~~ 110 (205)
T 4aoe_A 37 LQDIYTADVGTDQVELGLWLVISWKDRSLSWSNECTTFNELTLPSK---YIWLPHIEVYNSIGKPGI---HSDQLVRVYK 110 (205)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEEEECCCCCCSCCCSCCCEEEEEGG---GSCCCCCEETTBSSCCEE---CSCCEEEEET
T ss_pred EEEeeeEcccCCEEEEEEEEEEEEECCccccCCcCCCccEEEeCHH---HhccccEEEecccccccc---ccceEEEEeC
Confidence 678999999999999999999999999999998 589999999998 999999999999875432 3456799999
Q ss_pred cceEEEeeeceeEEeeceeeccCCcceeeeeeEEeccccccceEEEEecCCCCceeecCccccCceEEeeeEEeeeEe--
Q psy7487 81 SGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLEI-- 158 (439)
Q Consensus 81 ~G~V~~~~r~~~~~~C~~dl~~fPfD~Q~C~l~~~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~-- 158 (439)
||+|.|..|.+.+++|+|| ..||||+|+|+++|+||+|+.+++.+.+.+ .++.+++..++||++.+....++..
T Consensus 111 ~G~V~~~~~~~~~s~C~~d-~~fPfD~Q~C~l~fgSw~y~~~~l~l~~~~---~~dl~~~~~n~EW~l~~~~~~r~~~~Y 186 (205)
T 4aoe_A 111 DGTVTFVPQYTIRFSCALE-NVTTEQGAACTLKFGPWTYDVRDLVLDESQ---QVDLTTYAGGERFQLIEAKQKVNKKTY 186 (205)
T ss_dssp TSEEEECCEEEEEEECCCT-TSSSSSCEEEEEEEECSSCCTTTEEEECSS---SCBCTTSCTTCSEEEEEEEEEEEEEEE
T ss_pred CcEEEEeCcEEEEEecccC-cCCCccCCeEEEEEECccCChheEEEecCc---ccchhccccCCcEEEEeeEEEEEEEEe
Confidence 9999999999999999999 899999999999999999999999997543 4567778889999999998876654
Q ss_pred ecCCCceeeEEEEEEEEe
Q psy7487 159 SLTTGNYSRLACEIQFVR 176 (439)
Q Consensus 159 ~~~~~~~s~l~~~~~l~R 176 (439)
.||+++|+++++++++||
T Consensus 187 ~CC~~~y~dit~~i~lrR 204 (205)
T 4aoe_A 187 PCCPQSFEDIELRVTFKK 204 (205)
T ss_dssp TTEEEEEEEEEEEEEEEE
T ss_pred CCCCCCcceEEEEEEEEE
Confidence 456899999999999999
No 15
>4aod_A Acetylcholine-binding protein type 1; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholine receptor; 6.00A {Biomphalaria glabrata}
Probab=100.00 E-value=2.6e-37 Score=280.08 Aligned_cols=165 Identities=18% Similarity=0.362 Sum_probs=148.3
Q ss_pred ccccccccccceeEEEEEEEEeEEeCcccccCC-CCCeeEEEeCCcccCCccccceEEeeccccceeeeeccceeEEEee
Q psy7487 2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQ-RPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIHH 80 (439)
Q Consensus 2 l~~i~~vde~~~~~t~~~~l~~~W~D~RL~w~~-~~~i~~i~l~~~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~v~i~~ 80 (439)
|.+|.++||++|++++++|++|+|+|+||+||+ ++|++.+.++.+ +||+||+++.|+++... ...+..++|++
T Consensus 37 l~~i~~vde~~q~~t~~~wl~~~W~D~rL~W~~~~~~i~~i~v~~~---~IW~PDi~l~N~~~~~~---~~~~~~~~v~~ 110 (205)
T 4aod_A 37 LQKIFRADVENDEVDIGLWTTLVWKDRCLNWFNEFTSFKELTVPIA---EIWTPDIFIFDSVGAPE---IFSDKLARVSQ 110 (205)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEEEECCCCCCSCCCSCCCEEEEEGG---GSCCCCEEETTBSSCCE---ECSCCEEEEET
T ss_pred eeeeeeecccCCEEEEEEEEEEEEECCceeeCCcCCCccEeeccHH---hcCcCCEEEEcccccce---eecceEEEEec
Confidence 679999999999999999999999999999998 589999999998 99999999999987642 34456699999
Q ss_pred cceEEEeeeceeEEeeceeeccCCcceeeeeeEEeccccccceEEEEecCCCCceeecCccccCceEEeeeEEeeeEe--
Q psy7487 81 SGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLEI-- 158 (439)
Q Consensus 81 ~G~V~~~~r~~~~~~C~~dl~~fPfD~Q~C~l~~~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~-- 158 (439)
||+|.|..|...+++|+||+.+|||| |+|+++|+||+|+.+++.+.|+. .++.+++..++||++.+....++..
T Consensus 111 ~G~V~~~~~~~~~s~C~~d~~~fPfD-Q~C~l~fgSw~y~~~~i~l~~~~---~~dl~~~~~n~EW~l~~~~~~~~~~~Y 186 (205)
T 4aod_A 111 DGTVTYVPQLKVRLSCPLADLKLETG-VTCSLKSGSWTHSTQELTLEVNA---KVDLGDYASDTRFQLLNATQQVNRKQY 186 (205)
T ss_dssp TSEEEECCEEEEEEECCCTTSSSSSC-EEEEEEEEESSCCTTTEEEECSS---SCBCTTSCTTCSSEEEEEEEEEEEEEE
T ss_pred CCEEEEeccEEEEEEecCccccCCCC-cEEEEEEECccccccEEEEEECC---CcccccccccCCEEEEeeEEEEEEEEe
Confidence 99999999999999999999999999 99999999999999999999865 3566778889999999988876654
Q ss_pred ecCCCceeeEEEEEEEEe
Q psy7487 159 SLTTGNYSRLACEIQFVR 176 (439)
Q Consensus 159 ~~~~~~~s~l~~~~~l~R 176 (439)
.+++++|+++++++++||
T Consensus 187 ~cc~~~Y~~it~~~~lrR 204 (205)
T 4aod_A 187 PCCPETYEDTTLSFTFRK 204 (205)
T ss_dssp TTEEEEEEEEEEEEEEEC
T ss_pred CCCCCCcceEEEEEEEEC
Confidence 455889999999999977
No 16
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} SCOP: b.96.1.1 PDB: 3sq9_A*
Probab=100.00 E-value=5.2e-37 Score=278.75 Aligned_cols=163 Identities=20% Similarity=0.364 Sum_probs=147.3
Q ss_pred ccccccccccceeEEEEEEEEeEEeCcccccCCC--CCeeEEEeCCcccCCccccceEEeeccc--cceeeeeccceeEE
Q psy7487 2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQR--PGVETLSVGSDFIKNIWVPDTFFVNEKQ--SYFHIATTSNEFIR 77 (439)
Q Consensus 2 l~~i~~vde~~~~~t~~~~l~~~W~D~RL~w~~~--~~i~~i~l~~~~~~~IW~Pdi~~~N~~~--~~~~~~~~~~~~v~ 77 (439)
|.+|.++||++|++++++|++|+|+|+||+|||. +|++.+.++.+ +||+||+++.|+++ +.++.. .++
T Consensus 35 l~~i~~v~e~~~~~t~~~~~~~~W~D~rL~w~~~~~~~i~~i~~~~~---~iW~PDi~~~N~~~~~~~~~~~-----~v~ 106 (204)
T 3sq6_A 35 LLQIMDVDEKNQVVDVVFWLQMSWTDHYLQWNVSEYPGVKQVSVPIS---SLWVPDLAAYNAISKPEVLTPQ-----LAL 106 (204)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEEEECGGGCCCTTTSSSCCEEEEEGG---GSCCCCEEETTBSSCCEECSCC-----EEE
T ss_pred hhheeehhccccEEEEEEeeeeEEECCCcccChHHcCCccEEEcCHH---HCcCCCEEeEcccccCCccccc-----EEE
Confidence 5789999999999999999999999999999984 78999999987 99999999999998 655432 699
Q ss_pred EeecceEEEeeeceeEEeeceeeccCCcceeeeeeEEeccccccceEEEEecCCCCceeecCccccCceEEeeeEEeeeE
Q psy7487 78 IHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLE 157 (439)
Q Consensus 78 i~~~G~V~~~~r~~~~~~C~~dl~~fPfD~Q~C~l~~~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~ 157 (439)
|++||+|.|..|++.++.|+||+ +||||+|+|+++|+||+|+.+++.+.|.. +..++...++||++.+....+..
T Consensus 107 v~~~G~V~~~~~~~~~~~C~mdl-~fPfD~Q~C~l~f~S~~y~~~~v~l~~~~----~~~~~~~~~~eW~l~~~~~~~~~ 181 (204)
T 3sq6_A 107 VNSSGHVQYLPSIRQRFSCDVSG-VDTESGATCKLKFGSWTHHSRELDLQMQE----ADISGYIPYSRFELVGVTQKRSE 181 (204)
T ss_dssp EETTSEEEECCEEEEEEECCCGG-GSSSSCEEEEEEEEESSCCTTTEEEECCC----CCCTTSCSSSSEEEEEEEEEEEE
T ss_pred EEeCCEEEEecCeeEEEeccccc-cCCCCCcEEEEEEEeecccCeEEEEEecc----CCHHHcccCCCEEEEEeEEEEEE
Confidence 99999999999999999999999 99999999999999999999999999753 34556778999999999887766
Q ss_pred eec--CCCceeeEEEEEEEEee
Q psy7487 158 ISL--TTGNYSRLACEIQFVRS 177 (439)
Q Consensus 158 ~~~--~~~~~s~l~~~~~l~R~ 177 (439)
..+ ++++|+++.+++++||+
T Consensus 182 ~~y~~c~~~y~~i~~~~~lrRr 203 (204)
T 3sq6_A 182 RFYECCKEPYPDVTFTVTFRKK 203 (204)
T ss_dssp EECSSSSSEEEEEEEEEEEEEC
T ss_pred EeeCCCCCCcceEEEEEEEEEC
Confidence 544 48899999999999997
No 17
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ...
Probab=100.00 E-value=8.5e-37 Score=282.16 Aligned_cols=174 Identities=15% Similarity=0.271 Sum_probs=150.0
Q ss_pred ccccccccccceeEEEEEEEEeEEeCcccccCCC--CCeeEEEeCCcccCCccccceEEeeccccceeeeeccceeEEEe
Q psy7487 2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQR--PGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIH 79 (439)
Q Consensus 2 l~~i~~vde~~~~~t~~~~l~~~W~D~RL~w~~~--~~i~~i~l~~~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~v~i~ 79 (439)
+.+|.++||++|++++++|++|+|+|+||+|||. +|++.+.++.+ +||+||+++.|++++.++.. +..++|+
T Consensus 46 l~~i~~v~e~~~~~~~~~~l~~~W~D~rL~w~~~~y~~i~~l~~~~~---~IW~PDi~l~N~~~~~~~~~---~~~v~i~ 119 (228)
T 2wn9_A 46 LQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAA---DIWTPDITAYSSTRPVQVLS---PQIAVVT 119 (228)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEEEEEEEEECCGGGGTTCCEEEEEGG---GSCCCCEEESSBSSCCEECS---CCEEEEE
T ss_pred hhHhhhhhccccEEEEEEEEEEEEECCCccCCchhcCCeeEEEecHH---HccCCceecccccccccccc---cceEEEe
Confidence 5789999999999999999999999999999984 78999999987 99999999999999887764 6779999
Q ss_pred ecceEEEeeeceeEEeec---eeeccCCcceeeeeeEEeccccccceEEEEecCCCCceeecCccccCceEEeeeEEeee
Q psy7487 80 HSGSITRSIRLTITASCP---MNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDL 156 (439)
Q Consensus 80 ~~G~V~~~~r~~~~~~C~---~dl~~fPfD~Q~C~l~~~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~ 156 (439)
+||+|.|..|++.+++|+ ||++ |+|+|+++|+||+|+.+++.+.|..+ .+..++...++||++.+....+.
T Consensus 120 ~~G~V~~~~~~~~~~~C~~~~mdl~----D~Q~C~l~f~Sw~y~~~~i~l~~~~~--~~~~~~~~~~~ew~l~~~~~~~~ 193 (228)
T 2wn9_A 120 HDGSVMFIPAQRLSFMCDPTGVDSE----EGATCAVKFGSWVYSGFEIDLKTDTD--QVDLSSYYASSKYEILSATQTRQ 193 (228)
T ss_dssp TEEEEEECCEEEEEEECCCTTTTST----TCEEEEEEEEESSCCTTTEEEECSCS--BCBCTTCCTTCSEEEEEEEEEEE
T ss_pred CCeEEEEeCCEEEEEECCCCCCCCC----cCcEeeEEEEeecccccEEEEEecCC--ccchhhceecCCEEEEEEEEEEE
Confidence 999999999999999999 9999 99999999999999999999999763 45666677899999999887666
Q ss_pred Eee--cCCCceeeEEEEEEEEeeeeEEEEeeeh
Q psy7487 157 EIS--LTTGNYSRLACEIQFVRSMGYYLIQIYI 187 (439)
Q Consensus 157 ~~~--~~~~~~s~l~~~~~l~R~~~~y~~~i~l 187 (439)
... +++|+|++++++|++||+++||++++++
T Consensus 194 ~~~y~~~~~~y~~l~~~~~l~R~~~fYii~lil 226 (228)
T 2wn9_A 194 VQHYSCCPEPYIDVNLVVKFRERRAGNGFFRNL 226 (228)
T ss_dssp EECCSSCSSCEEEEEEEEEEEECC---------
T ss_pred EEeecCCCCCeeEEEEEEEEEEeccceEEEEEE
Confidence 543 4579999999999999999999999864
No 18
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* 4b5d_A*
Probab=100.00 E-value=4.3e-36 Score=276.88 Aligned_cols=171 Identities=14% Similarity=0.261 Sum_probs=146.8
Q ss_pred cccccccccc----ceeEEEEEEEEeEEeCcccccCCC--CCeeEEEeCCcccCCccccceEEeeccccceeeeecccee
Q psy7487 2 LESVLKLKFR----SEDFTLDFYFRQFWTDPRLAFRQR--PGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEF 75 (439)
Q Consensus 2 l~~i~~vde~----~~~~t~~~~l~~~W~D~RL~w~~~--~~i~~i~l~~~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~ 75 (439)
|.+|.++||+ +|++++++|++|+|+|+||+|||. +|++.+.++.+ +||+||+++.|++++.++... +..
T Consensus 42 l~~i~~v~E~~~~~~~~~t~~~~l~~~W~D~rL~wnp~~~~~i~~i~l~~~---~IW~PDi~l~N~~~~~~~~~~--~~~ 116 (230)
T 4afh_A 42 LQLLKSIEQRGMGFNSIGTFKAIVKLSWVDTILRWDPEPPFDFQKIEISPD---EIWTPDIKLFNSVDLDMTLDR--TTQ 116 (230)
T ss_dssp EEEEEEEEECTTSSEEEEEEEEEEEEEEECGGGCCCCCTTSCCSEEEECGG---GSCCCCEEETTCSSSSCEECT--TSC
T ss_pred HhHhhhhhhcccccCcEEEEEEEEeeEEECccccCCcccCCCeeEEEeccC---CEECCcEEEEecccccccccc--cce
Confidence 5789999999 999999999999999999999984 78999999988 999999999999998877532 345
Q ss_pred EEEeecceEEEeeeceeEEeeceeeccCCcceeeeeeEEeccccccceEEEEecCCCCceeecCccccCceEEeeeEEee
Q psy7487 76 IRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKD 155 (439)
Q Consensus 76 v~i~~~G~V~~~~r~~~~~~C~~dl~~fPfD~Q~C~l~~~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~~w~l~~~~~~~ 155 (439)
++|++||+|.|..|++.++.|+| |||+|+|+++|+||+|+.+++.+.|..+...++. +...++ |++.+....+
T Consensus 117 v~v~~~G~V~~~~~~~~~s~C~m-----PfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~d~-~~~~n~-W~l~~~~~~~ 189 (230)
T 4afh_A 117 AIVFSNGTVLWIPPAVLKVLCVS-----QDDVDSCHFQFGSWVYSVDEVDIHFMDDKAEVLL-DFYQDS-LEILENSAQR 189 (230)
T ss_dssp EEEETTSEEEECCEEEEEEEEEE-----ETTEEEEEEEEEESSCCTTTEEEEEGGGCCSCBC-TTCCCC-CCEEEEEEEE
T ss_pred EEEEcCCEEEEecCEEEEEECCC-----CCCcccCCEeeccccccCceEEEEECCCCcccce-eeecCc-EEEEEEEEEE
Confidence 89999999999999999999999 9999999999999999999999999875444556 667788 9999998876
Q ss_pred eEee--cCCCceeeEEEEEEEEeeeeEEEEe
Q psy7487 156 LEIS--LTTGNYSRLACEIQFVRSMGYYLIQ 184 (439)
Q Consensus 156 ~~~~--~~~~~~s~l~~~~~l~R~~~~y~~~ 184 (439)
.... +++++|+++.+++++||+++||+.+
T Consensus 190 ~~~~y~cc~~~y~~i~f~~~irRrpl~~~~~ 220 (230)
T 4afh_A 190 QEVVYPCCESAYVEMKYLLALRSENGNSTYS 220 (230)
T ss_dssp EEECCTTCSSCEEEEEEEEEEECC-------
T ss_pred EEEecCCCCCCccEEEEEEEEEEeechhhcc
Confidence 6554 4578999999999999999999875
No 19
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus}
Probab=100.00 E-value=1.1e-35 Score=270.21 Aligned_cols=166 Identities=15% Similarity=0.304 Sum_probs=151.0
Q ss_pred ccccccccccceeEEEEEEEEeEEeCccc-ccCCCCCeeEEEeCCcccCCccccceEEeec-cccceeeeeccceeEEEe
Q psy7487 2 LESVLKLKFRSEDFTLDFYFRQFWTDPRL-AFRQRPGVETLSVGSDFIKNIWVPDTFFVNE-KQSYFHIATTSNEFIRIH 79 (439)
Q Consensus 2 l~~i~~vde~~~~~t~~~~l~~~W~D~RL-~w~~~~~i~~i~l~~~~~~~IW~Pdi~~~N~-~~~~~~~~~~~~~~v~i~ 79 (439)
+.+|.++||++|++++++|++|+|+|+|| +|||.+|++.+.++.+ +||+||+++.|+ +++.+|.. ..++|+
T Consensus 33 l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~~w~~~~~i~~~~~~~~---~iW~PDi~~~N~~~~~~~~~~----~~v~i~ 105 (203)
T 2bj0_A 33 LMNIVEADTEKDQVEVVLWTQASWKVPYYSSLLSSSSLDQVSLPVS---KMWTPDLSFYNAIAAPELLSA----DRVVVS 105 (203)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEEEECGGGGGGTTTSSCSEEEEEGG---GSCCCCEEETTCSSCCEECSC----CEEEEE
T ss_pred EEeEeeecCCCCEEEEEEEEEeEEECcchhccCccCCceEEEEchh---hccCCCccccccccccccccc----eEEEEe
Confidence 67899999999999999999999999999 9999778999999987 999999999999 99887765 459999
Q ss_pred ecceEEEeeeceeEEeece-eeccCCcceeeeeeEEeccccccceEEEEecCCCCceeecCccccCceEEeeeEEeeeEe
Q psy7487 80 HSGSITRSIRLTITASCPM-NLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLEI 158 (439)
Q Consensus 80 ~~G~V~~~~r~~~~~~C~~-dl~~fPfD~Q~C~l~~~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~ 158 (439)
+||+|.|..|++.+++|+| |+++ ||+|+|+++|+||+|+.+++.+.|..+. ++..+++..++||++.+.....+..
T Consensus 106 ~~G~V~~~~~~~~~~~C~m~dl~~--fD~Q~C~l~f~S~~y~~~~v~l~~~~~~-~~~~~~~~~~~ew~l~~~~~~~~~~ 182 (203)
T 2bj0_A 106 KDGSVIYVPSQRVRFTCDLINVDT--EPGATCRIKVGSWTHDNKQFALITGEEG-VVNIAEYFDSPKFDLLSATQSLNRK 182 (203)
T ss_dssp TTSEEEECCEEEEEEECCCTTTTS--SSCEEEEEEEEESSCCTTTEEEEECTTT-TSCTTTTCCCSSEEEEEEEEEEEEE
T ss_pred CCcEEEEecceEEEEEccccccCc--cccceeeEEEEcccccCcEEEEEecCCC-ccchhcceecCCEEEEEeEEEEEEE
Confidence 9999999999999999999 9998 9999999999999999999999997532 2667778889999999998877665
Q ss_pred ec--CCCceeeEEEEEEEEee
Q psy7487 159 SL--TTGNYSRLACEIQFVRS 177 (439)
Q Consensus 159 ~~--~~~~~s~l~~~~~l~R~ 177 (439)
.+ ++|+|++++++|++||+
T Consensus 183 ~y~~~~~~y~~l~~~~~l~R~ 203 (203)
T 2bj0_A 183 KYSCCENMYDDIEITFAFRKK 203 (203)
T ss_dssp ECTTCSSEEEEEEEEEEEEEC
T ss_pred ecCCCCCCeeEEEEEEEEEEC
Confidence 54 48999999999999996
No 20
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A*
Probab=100.00 E-value=2.6e-35 Score=269.43 Aligned_cols=168 Identities=20% Similarity=0.343 Sum_probs=147.7
Q ss_pred ccccccccccceeEEEEEEEEeEEeCcccccCCC--CCeeEEEeCCcccCCccccceEEeeccccceeeeeccceeEEEe
Q psy7487 2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQR--PGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIH 79 (439)
Q Consensus 2 l~~i~~vde~~~~~t~~~~l~~~W~D~RL~w~~~--~~i~~i~l~~~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~v~i~ 79 (439)
+.+|.++||++|++++++|++|+|+|+||+|||. +| .+.++.+ +||+||+++.|++++. ....+ ..++|+
T Consensus 36 l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~w~~~~~~~--~l~~~~~---~iW~PDi~~~N~~~~~--~~~~~-~~~~i~ 107 (211)
T 1uw6_A 36 FINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPD--QVSVPIS---SLWVPDLAAYNAISKP--EVLTP-QLARVV 107 (211)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEEEECGGGCCCCTTSCS--EEEEEGG---GSCCCCEEETTBCSCC--EECSC-CEEEEE
T ss_pred HHHhhchhhhCcEEEEEEEEEeEeECcccccChhhcCC--eEEccHH---HccCCCEeeecccccc--cccee-eEEEEe
Confidence 5789999999999999999999999999999984 45 7889887 9999999999999987 33333 679999
Q ss_pred ecceEEEeeeceeEEeec---eeeccCCcceeeeeeEEeccccccceEEEEecCCCCceeecCccc-cCceEEeeeEEee
Q psy7487 80 HSGSITRSIRLTITASCP---MNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVS-LPQFKVLGHRQKD 155 (439)
Q Consensus 80 ~~G~V~~~~r~~~~~~C~---~dl~~fPfD~Q~C~l~~~S~~y~~~~v~l~~~~~~~~~~~~~~~~-~~~w~l~~~~~~~ 155 (439)
+||+|.|..|++.++.|+ ||++ |+|+|+++|+||+|+.+++.+.|..+ .+..++... ++||++.+....+
T Consensus 108 ~~G~V~~~~~~~~~~~C~~~~mdl~----D~Q~C~l~f~S~~y~~~~i~l~~~~~--~~~~~~~~~~~~ew~l~~~~~~~ 181 (211)
T 1uw6_A 108 SDGEVLYMPSIRQRFSCDVSGVDTE----SGATCRIKIGSWTHHSREISVDPTTE--NSDDSEYFSQYSRFEILDVTQKK 181 (211)
T ss_dssp TTSEEEECCEEEEEEECCCTTTTSS----SCEEEEEEEEESSCCTTTEEEEECCC--SSCTTTTSCTTSSEEEEEEEEEE
T ss_pred CCceEEEeCCEEEEEECCCCCCCCC----cceEeEEEEEcccccCceEEEEeccc--ccchhhhcccCCCEEEEeeEEEE
Confidence 999999999999999999 9999 99999999999999999999999763 456667788 9999999988766
Q ss_pred eEee--cCCCceeeEEEEEEEEeeeeEEEE
Q psy7487 156 LEIS--LTTGNYSRLACEIQFVRSMGYYLI 183 (439)
Q Consensus 156 ~~~~--~~~~~~s~l~~~~~l~R~~~~y~~ 183 (439)
.... +++|+|+++++++++||+++||++
T Consensus 182 ~~~~y~~~~~~y~~l~~~~~l~R~~~yyil 211 (211)
T 1uw6_A 182 NSVTYSCCPEAYEDVEVSLNFRKKGRSEIL 211 (211)
T ss_dssp EEEECTTCSSEEEEEEEEEEEEECCCC---
T ss_pred EEEEeCCCCCCcceEEEEEEEEEccceeEC
Confidence 5544 458999999999999999999974
No 21
>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR {Torpedo marmorata} PDB: 2lkh_A
Probab=99.71 E-value=1.2e-21 Score=164.59 Aligned_cols=97 Identities=15% Similarity=0.142 Sum_probs=92.7
Q ss_pred cccccccchhhHHHHHhhcceeeeeeecceeEEEEEeeeeeeeCCCCccceeeeeeeeEEEeeeccccccCCCCCc-ccc
Q psy7487 341 LLGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKIS-YVK 419 (439)
Q Consensus 341 l~~~~s~l~~~~~l~R~~~~~~~~~~~p~~l~v~~sw~~fw~~~~~~~~r~~l~~~~~lt~~~~~~~~~~~lp~vs-y~k 419 (439)
..|.|+++...|.++||.+||..|.|+|+.+++++||++||+++++ ++|+++|++++|+++++....++.+|++| |++
T Consensus 32 ~~g~y~~l~~~f~lrR~~~~y~~~liiP~~li~~Ls~~~F~Lp~ds-geRvslgit~lLs~tvfl~~v~~~lP~tS~~vP 110 (140)
T 2lkg_A 32 EAGRLIELSQEGGGGGGPLYFVVNVIEPCKKFSELTGLVFYLPTDS-GEKMTESKSVLKSLTEKLKKIVELIPSTSSAVP 110 (140)
T ss_dssp HHHHHHHHHHTSCSSSCTHHHHHHHHHHHHHHHTHHHHSSSSCCSS-SHHHHHHHHHHHHHHHHHHGGGGTCTTTGGGHH
T ss_pred CCCcEEEEEEEEEEEEcceeeeehhhhHHHHHHHHHhheeEcCCCC-CCEEEEeeehHHHHHHHHHHHHHhCCCcccccc
Confidence 4566899999999999999999999999999999999999999985 89999999999999999999999999999 999
Q ss_pred eeeeeehhhhhhhhhhhcc
Q psy7487 420 SIDVYLGTCFVMVFASLLG 438 (439)
Q Consensus 420 aiD~~~~~c~~~vf~~l~~ 438 (439)
+||+|+.+|+.++|++++|
T Consensus 111 lI~~y~~~~~~~v~~sll~ 129 (140)
T 2lkg_A 111 LIGKYMLFTKEFVESSIKI 129 (140)
T ss_dssp HHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999986
No 22
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A
Probab=99.69 E-value=3.5e-19 Score=153.66 Aligned_cols=95 Identities=21% Similarity=0.314 Sum_probs=74.3
Q ss_pred ecCCCceeeEEEEEEEEeeeeEEEEeeehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhhh-----------
Q psy7487 159 SLTTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVL----------- 227 (439)
Q Consensus 159 ~~~~~~~s~l~~~~~l~R~~~~y~~~i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~~----------- 227 (439)
..++|+|+++++++++||+++||..++++||+++++++|++||+|+|+ |||+++|+|++|++++++..
T Consensus 9 ~~~~~~y~~i~~~~~lrR~~~~Y~~~liiP~~li~~Ls~~~F~Lp~ds-geRvslgit~LLs~tvfl~~v~~~lP~tS~~ 87 (164)
T 2ksr_A 9 TSVDLGTENLYFQSNARRKPLFYTINLIIPCVLITSLAILVFYLPSDC-GEKMTLCISVLLALTVFLLLISKIVPPTSLD 87 (164)
T ss_dssp ----------------CCCTHHHHHHTHHHHHHHHHHHHHHHTSCCCS-HHHHHHHHHHHHHHHHHHHHHHTTCCSSCTT
T ss_pred CCCCCCcceEEEEEEEEEeehheeeeehhhHHHHHHHHhheeEcCCCC-CCeEEEeeehHHHHHHHHHHHHHHCCCCccc
Confidence 456789999999999999999999999999999999999999999998 89999999999999999886
Q ss_pred hhhhhhhhhhHHHHHHHHHhhhhccce
Q psy7487 228 SFSIDVYLGTCFVMVFASLLGNYSRLA 254 (439)
Q Consensus 228 ~~~i~~~~~~~~~~v~~slle~~~~l~ 254 (439)
+|+||+|+.+|++++++|++|+...+.
T Consensus 88 vPlI~~y~~~~m~~v~~sll~tv~Vl~ 114 (164)
T 2ksr_A 88 VPLVGKYLMFTMVLVTFSIVTSVCVLN 114 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 399999999999999999999865544
No 23
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=99.67 E-value=3e-20 Score=182.42 Aligned_cols=119 Identities=45% Similarity=0.858 Sum_probs=105.7
Q ss_pred cccCCCeeEeeeeeEEEeeeeEEeeeecccccccchhhHHHHHhhcceeeeeeecceeEEEEEeeeeeeeCCCCccceee
Q psy7487 314 NAALPKVSYIKSIDVYLGTCFVMVFACLLGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVAL 393 (439)
Q Consensus 314 ~~~LP~~~y~~~~d~~~~~c~~~~~~~l~~~~s~l~~~~~l~R~~~~~~~~~~~p~~l~v~~sw~~fw~~~~~~~~r~~l 393 (439)
...+|++..... ....|... ...|.|+++...+.++|+.+||+++.|+|+.+++++||++||+++++.++|+++
T Consensus 175 ~~~~~e~~l~~~---~~~~~~~~---~~~~~y~~l~~~~~l~R~~~~y~~~l~iP~~li~~ls~~sF~lp~~~~~~Rv~l 248 (347)
T 3rhw_A 175 SSSLPSFQLTNT---STTYCTSV---TNTGIYSCLRTTIQLKREFSFYLLQLYIPSCMLVIVSWVSFWFDRTAIPARVTL 248 (347)
T ss_dssp GGGCCSEEEEEE---EEEECCEE---CSSCEECEEEEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTTSCTTCHHHHHHH
T ss_pred eeEccceEEeeE---EeeEeeee---ecccceeEEEEEEEEEEEeeEEEEEeehhHHHHHHHhheEEeccCCCCcceEEE
Confidence 456888876532 23334322 245779999999999999999999999999999999999999999998999999
Q ss_pred eeeeeEEEeeeccccccCCCCCcccceeeeeehhhhhhhhhhhcc
Q psy7487 394 GVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLG 438 (439)
Q Consensus 394 ~~~~~lt~~~~~~~~~~~lp~vsy~kaiD~~~~~c~~~vf~~l~~ 438 (439)
|+|++|+++++....+..+|++||+|+||+|+.+|++|+|++|+|
T Consensus 249 git~lLt~tv~~~~~~~~lP~~S~v~~id~~~~~~~~~v~~slle 293 (347)
T 3rhw_A 249 GVTTLLTMTAQSAGINSQLPPVSYIKAIDVWIGACMTFIFCALLE 293 (347)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred EeehHHHHHHHHHHHHhhCCCccceeHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998
No 24
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=99.67 E-value=1.3e-19 Score=133.47 Aligned_cols=53 Identities=57% Similarity=0.951 Sum_probs=51.1
Q ss_pred CccceeeeeeeeEEEeeeccccccCCCCCcccceeeeeehhhhhhhhhhhccC
Q psy7487 387 TPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLGL 439 (439)
Q Consensus 387 ~~~r~~l~~~~~lt~~~~~~~~~~~lp~vsy~kaiD~~~~~c~~~vf~~l~~~ 439 (439)
.|||+++|+|++||++++.++.+.++|||||+||||+|+++|+.|||++|+|+
T Consensus 1 ~paRv~LGittvLtmtt~~~~~~~~lPkVSYikAiDvw~~~C~~FVF~aLlEy 53 (76)
T 1vry_A 1 LPARVGLGITTVLTLTTQSSGSRASLPKVSYVKAIDIWLAVCLLFVFSALLEY 53 (76)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCTTTCCCSHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred CCceEEechHHHHHHHHHhcCcccCCCCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999994
No 25
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A
Probab=99.67 E-value=1.2e-20 Score=162.67 Aligned_cols=95 Identities=22% Similarity=0.323 Sum_probs=81.3
Q ss_pred cccccchhhHHHHHhhcceeeeeeecceeEEEEEeeeeeeeCCCCccceeeeeeeeEEEeeeccccccCCCCCc-cccee
Q psy7487 343 GNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKIS-YVKSI 421 (439)
Q Consensus 343 ~~~s~l~~~~~l~R~~~~~~~~~~~p~~l~v~~sw~~fw~~~~~~~~r~~l~~~~~lt~~~~~~~~~~~lp~vs-y~kai 421 (439)
|.|+++...+.+|||.+||..|.|+||.+++++||++||+++++ ++|+++|+|++|+++++....++.+|++| |+++|
T Consensus 13 ~~y~~i~~~~~lrR~~~~Y~~~liiP~~li~~Ls~~~F~Lp~ds-geRvslgit~LLs~tvfl~~v~~~lP~tS~~vPlI 91 (164)
T 2ksr_A 13 LGTENLYFQSNARRKPLFYTINLIIPCVLITSLAILVFYLPSDC-GEKMTLCISVLLALTVFLLLISKIVPPTSLDVPLV 91 (164)
T ss_dssp ------------CCCTHHHHHHTHHHHHHHHHHHHHHHTSCCCS-HHHHHHHHHHHHHHHHHHHHHHTTCCSSCTTHHHH
T ss_pred CCcceEEEEEEEEEeehheeeeehhhHHHHHHHHhheeEcCCCC-CCeEEEeeehHHHHHHHHHHHHHHCCCCcccCCHH
Confidence 56999999999999999999999999999999999999999987 89999999999999999999999999999 99999
Q ss_pred eeeehhhhhhhhhhhcc
Q psy7487 422 DVYLGTCFVMVFASLLG 438 (439)
Q Consensus 422 D~~~~~c~~~vf~~l~~ 438 (439)
|+|+.+|+.++|++++|
T Consensus 92 ~~y~~~~m~~v~~sll~ 108 (164)
T 2ksr_A 92 GKYLMFTMVLVTFSIVT 108 (164)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999987
No 26
>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR {Torpedo marmorata} PDB: 2lkh_A
Probab=99.63 E-value=3.6e-19 Score=149.46 Aligned_cols=93 Identities=13% Similarity=0.094 Sum_probs=85.7
Q ss_pred CCCceeeEEEEEEEEeeeeEEEEeeehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhhh-----------hh
Q psy7487 161 TTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVL-----------SF 229 (439)
Q Consensus 161 ~~~~~s~l~~~~~l~R~~~~y~~~i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~~-----------~~ 229 (439)
++|+|+++++++++||+++||.+++++|++++++++|++||+|+|+ +||+++|+|++|++++++.. +|
T Consensus 32 ~~g~y~~l~~~f~lrR~~~~y~~~liiP~~li~~Ls~~~F~Lp~ds-geRvslgit~lLs~tvfl~~v~~~lP~tS~~vP 110 (140)
T 2lkg_A 32 EAGRLIELSQEGGGGGGPLYFVVNVIEPCKKFSELTGLVFYLPTDS-GEKMTESKSVLKSLTEKLKKIVELIPSTSSAVP 110 (140)
T ss_dssp HHHHHHHHHHTSCSSSCTHHHHHHHHHHHHHHHTHHHHSSSSCCSS-SHHHHHHHHHHHHHHHHHHGGGGTCTTTGGGHH
T ss_pred CCCcEEEEEEEEEEEEcceeeeehhhhHHHHHHHHHhheeEcCCCC-CCEEEEeeehHHHHHHHHHHHHHhCCCcccccc
Confidence 3466799999999999999999999999999999999999999996 89999999999999999886 39
Q ss_pred hhhhhhhhHHHHHHHHHhhhhccce
Q psy7487 230 SIDVYLGTCFVMVFASLLGNYSRLA 254 (439)
Q Consensus 230 ~i~~~~~~~~~~v~~slle~~~~l~ 254 (439)
+||+|+..|++++++|++|+...++
T Consensus 111 lI~~y~~~~~~~v~~sll~tv~Vln 135 (140)
T 2lkg_A 111 LIGKYMLFTKEFVESSIKITEEVIN 135 (140)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhee
Confidence 9999999999999999999865543
No 27
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=99.60 E-value=6.1e-20 Score=181.61 Aligned_cols=97 Identities=19% Similarity=0.280 Sum_probs=94.2
Q ss_pred ccccccchhhHHHHHhhcceeeeeeecceeEEEEEeeeeeeeCCCCccceeeeeeeeEEEeeeccccccCCCCCcc-cce
Q psy7487 342 LGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISY-VKS 420 (439)
Q Consensus 342 ~~~~s~l~~~~~l~R~~~~~~~~~~~p~~l~v~~sw~~fw~~~~~~~~r~~l~~~~~lt~~~~~~~~~~~lp~vsy-~ka 420 (439)
.|.|+++...++++|+.+||++|.|+|+.+++++||++||+++++.++|+++|+|++|+++++....+..+|++|| +++
T Consensus 195 ~~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sFwlp~~a~~~Rv~lgit~lLt~t~~~~~~~~~lP~~S~~vp~ 274 (370)
T 2bg9_E 195 DIDFQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNVPL 274 (370)
T ss_dssp CSCCCEEEECCEEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCcEEEEEEEEEEccCceeEEEehhHHHHHHHHHHeEEeccccCcceeEEeeeHHHHHHHHHHHHHHhCCCccCCCCh
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred eeeeehhhhhhhhhhhcc
Q psy7487 421 IDVYLGTCFVMVFASLLG 438 (439)
Q Consensus 421 iD~~~~~c~~~vf~~l~~ 438 (439)
||+|+.+|++|+|++++|
T Consensus 275 i~~~~~~~~~~v~~sll~ 292 (370)
T 2bg9_E 275 IGKYLIFVMFVSLVIVTN 292 (370)
T ss_dssp CSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999987
No 28
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=99.58 E-value=1.1e-19 Score=179.70 Aligned_cols=95 Identities=19% Similarity=0.390 Sum_probs=91.7
Q ss_pred cccccchhhHHHHHhhcceeeeeeecceeEEEEEeeeeeeeCCCCccceeeeeeeeEEEeeeccccccCCCCCcc-ccee
Q psy7487 343 GNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISY-VKSI 421 (439)
Q Consensus 343 ~~~s~l~~~~~l~R~~~~~~~~~~~p~~l~v~~sw~~fw~~~~~~~~r~~l~~~~~lt~~~~~~~~~~~lp~vsy-~kai 421 (439)
|.|+++...++++|+.+||++|.|+|+.+++++||++||+++++ ++|+++|+|++|+++++....+..+|++|| +|+|
T Consensus 196 ~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sF~lp~~~-~~Rv~lgit~lLt~t~~~~~~~~~lP~~S~~vp~i 274 (370)
T 2bg9_A 196 TPYLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDS-GEKMTLSISVLLSLTVFLLVIVELIPSTSSAVPLI 274 (370)
T ss_dssp CCCEEEEEEEEEECCCTHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCeeEEEEEEEEEEccchhhhhhhhHHHHHHHHHHHheecCCCC-CCeEEEeHHHHHHHHHHHHHHHhhCCCCcCCCCHH
Confidence 56889999999999999999999999999999999999999987 799999999999999999999999999998 9999
Q ss_pred eeeehhhhhhhhhhhcc
Q psy7487 422 DVYLGTCFVMVFASLLG 438 (439)
Q Consensus 422 D~~~~~c~~~vf~~l~~ 438 (439)
|+|+.+|++|+|++++|
T Consensus 275 ~~~~~~~~~~v~~sl~~ 291 (370)
T 2bg9_A 275 GKYMLFTMIFVISSIIV 291 (370)
T ss_dssp GGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999987
No 29
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=99.58 E-value=1.4e-18 Score=168.84 Aligned_cols=120 Identities=21% Similarity=0.296 Sum_probs=103.3
Q ss_pred ccccCCCeeEeeeeeEEEeeeeEEeeeecccccccchhhHHHHHhhcceeeeeeecceeEEEEEeeeeeeeCCCCcccee
Q psy7487 313 TNAALPKVSYIKSIDVYLGTCFVMVFACLLGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVA 392 (439)
Q Consensus 313 ~~~~LP~~~y~~~~d~~~~~c~~~~~~~l~~~~s~l~~~~~l~R~~~~~~~~~~~p~~l~v~~sw~~fw~~~~~~~~r~~ 392 (439)
....+|++..... ....+.. .+..-.|.|+++...++++|+.+||++|.|+|+.+++++||++|| +++.++|++
T Consensus 157 ~~~~~~ew~l~~~---~~~~~~~-~~~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~li~~ls~~sF~--p~~~~~Rv~ 230 (321)
T 3tlw_A 157 DDVFLTGWDIESF---TAVVKPA-NFALEDRLESKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW--STSYEANVT 230 (321)
T ss_dssp TTCCBTTEEEEEE---EEEEEEE-EEEETTEEEEEEEEEEEEEECCTTHHHHTHHHHHHHHHHHGGGGG--CCCHHHHHH
T ss_pred ccccccceEEEee---EeEEeeE-EecCCCCceeEEEEEEEEEEeeceeehhHHHHHHHHHHHhheeec--cCCCCCcEE
Confidence 4567888876532 1222221 123345779999999999999999999999999999999999999 677899999
Q ss_pred eeeeeeEEEeeeccccccCCCCCcccceeeeeehhhhhhhhhhhcc
Q psy7487 393 LGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLG 438 (439)
Q Consensus 393 l~~~~~lt~~~~~~~~~~~lp~vsy~kaiD~~~~~c~~~vf~~l~~ 438 (439)
+|+|++|+++++....+..+|++||+|+||+|+.+|++|+|++++|
T Consensus 231 l~it~lL~~t~~~~~~~~~lP~~s~vp~i~~~~~~~~~~v~~sll~ 276 (321)
T 3tlw_A 231 LVVSTLIAHIAFNILVETCLPKTPYMTYTGAIIFMIYLFYFVAVIE 276 (321)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCCCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEhhHHHHHHHHHHHHHhhCCCccccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999987
No 30
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens}
Probab=99.58 E-value=3.1e-19 Score=149.92 Aligned_cols=85 Identities=22% Similarity=0.348 Sum_probs=80.7
Q ss_pred HHHHhhcceeeeeeecceeEEEEEeeeeeeeCCCCccceeeeeeeeEEEeeeccccccCCCCCc-ccceeeeeehhhhhh
Q psy7487 353 QFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKIS-YVKSIDVYLGTCFVM 431 (439)
Q Consensus 353 ~l~R~~~~~~~~~~~p~~l~v~~sw~~fw~~~~~~~~r~~l~~~~~lt~~~~~~~~~~~lp~vs-y~kaiD~~~~~c~~~ 431 (439)
+++||.+||..|.|+||.+++++||++||+++|+ ++|+++|+|++|+++++....++.+|++| |+++||+|+.+|+.+
T Consensus 2 ~lrR~~~~y~~~~iiP~~li~~Ls~~~F~lp~~s-~eRv~lgit~lLs~tv~l~~~~~~lP~tS~~vpli~~y~~~~~~~ 80 (137)
T 2lly_A 2 NAEELPLFYTINLIIPCLLISCLTVLVFYLPSEC-GEKITLCISVLLSLTVFLLLITEIIPSTSSVSPSIGEYLLFTMIF 80 (137)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHSCCST-THHHHHHHHHHHHHHHHHHHHHHHCSCCSSSCCSTHHHHHHHHHH
T ss_pred ceEeeehhhhHHHHHHHHHHHHHHHHheeeCCCC-CCeEEEEeeeHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHH
Confidence 4789999999999999999999999999999987 79999999999999999999999999999 999999999999999
Q ss_pred hhhhhcc
Q psy7487 432 VFASLLG 438 (439)
Q Consensus 432 vf~~l~~ 438 (439)
+|++++|
T Consensus 81 v~~sl~~ 87 (137)
T 2lly_A 81 VTLSIVI 87 (137)
T ss_dssp HHHHHHH
T ss_pred HHHHhhh
Confidence 9999987
No 31
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=99.57 E-value=3.2e-19 Score=176.33 Aligned_cols=97 Identities=21% Similarity=0.338 Sum_probs=93.4
Q ss_pred cccccccchhhHHHHHhhcceeeeeeecceeEEEEEeeeeeeeCCCCccceeeeeeeeEEEeeeccccccCCCCCcc-cc
Q psy7487 341 LLGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISY-VK 419 (439)
Q Consensus 341 l~~~~s~l~~~~~l~R~~~~~~~~~~~p~~l~v~~sw~~fw~~~~~~~~r~~l~~~~~lt~~~~~~~~~~~lp~vsy-~k 419 (439)
-.|.|+++...++++|+.+||++|.|+|+.+++++||++||++++ .++|+++|+|++|+++++....+..+|++|| ++
T Consensus 191 ~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sFwlp~~-~~~Rv~lgit~lLt~t~~~~~~~~~lP~~S~~vp 269 (370)
T 2bg9_B 191 DDPSYEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPD-AGEKMSLSISALLALTVFLLLLADKVPETSLSVP 269 (370)
T ss_dssp TSSSBCCEEEECCEECCCCSSHHHHHHHHHHHHHHHHHHHHSTTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCccEEEEEEEEEEcccceeeeecchHHHHHHHHhheEEccCC-CCceEEEEehHHHHHHHHHHHHHhhCCCcccccc
Confidence 357799999999999999999999999999999999999999999 8999999999999999999999999999998 99
Q ss_pred eeeeeehhhhhhhhhhhcc
Q psy7487 420 SIDVYLGTCFVMVFASLLG 438 (439)
Q Consensus 420 aiD~~~~~c~~~vf~~l~~ 438 (439)
+||+|+.+|++|+|++++|
T Consensus 270 ~i~~~~~~~~~~v~~sll~ 288 (370)
T 2bg9_B 270 IIISYLMFIMILVAFSVIL 288 (370)
T ss_dssp CCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999986
No 32
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=99.56 E-value=1.4e-19 Score=178.82 Aligned_cols=96 Identities=20% Similarity=0.341 Sum_probs=92.8
Q ss_pred ccccccchhhHHHHHhhcceeeeeeecceeEEEEEeeeeeeeCCCCccceeeeeeeeEEEeeeccccccCCCCCcc-cce
Q psy7487 342 LGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISY-VKS 420 (439)
Q Consensus 342 ~~~~s~l~~~~~l~R~~~~~~~~~~~p~~l~v~~sw~~fw~~~~~~~~r~~l~~~~~lt~~~~~~~~~~~lp~vsy-~ka 420 (439)
.|.|+++...++++|+.+||++|.|+|+.+++++||++||++++ .++|+++|+|++|+++++....+..+|++|| +++
T Consensus 194 ~~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sF~lp~~-~~~Rv~lgit~lLt~t~~~~~~~~~lP~~S~~vp~ 272 (369)
T 2bg9_C 194 GTNYQDVTFYLIIRRKPLFYVINFITPCVLISFLAALAFYLPAE-SGEKMSTAICVLLAQAVFLLLTSQRLPETALAVPL 272 (369)
T ss_dssp SCCCEEEEEEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred CCCccEEEEEEEEEEccceeEEEEcchHHHHHHHHhheEEecCC-CCCeEEEEhHHHHHHHHHHHHHHHhCCCCccCccH
Confidence 56799999999999999999999999999999999999999998 7999999999999999999999999999998 999
Q ss_pred eeeeehhhhhhhhhhhcc
Q psy7487 421 IDVYLGTCFVMVFASLLG 438 (439)
Q Consensus 421 iD~~~~~c~~~vf~~l~~ 438 (439)
||+|+.+|++|+|++++|
T Consensus 273 i~~~~~~~~~~v~~sll~ 290 (369)
T 2bg9_C 273 IGKYLMFIMSLVTGVVVN 290 (369)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999986
No 33
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens}
Probab=99.51 E-value=1.6e-16 Score=133.31 Aligned_cols=83 Identities=24% Similarity=0.348 Sum_probs=75.3
Q ss_pred EEEeeeeEEEEeeehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhhh-----------hhhhhhhhhhHHHH
Q psy7487 173 QFVRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVL-----------SFSIDVYLGTCFVM 241 (439)
Q Consensus 173 ~l~R~~~~y~~~i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~~-----------~~~i~~~~~~~~~~ 241 (439)
++||+++||..++++||+++++++|++||+|+|+ +||+++|+|++|++++++.. +|+||+|+..|+++
T Consensus 2 ~lrR~~~~y~~~~iiP~~li~~Ls~~~F~lp~~s-~eRv~lgit~lLs~tv~l~~~~~~lP~tS~~vpli~~y~~~~~~~ 80 (137)
T 2lly_A 2 NAEELPLFYTINLIIPCLLISCLTVLVFYLPSEC-GEKITLCISVLLSLTVFLLLITEIIPSTSSVSPSIGEYLLFTMIF 80 (137)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHSCCST-THHHHHHHHHHHHHHHHHHHHHHHCSCCSSSCCSTHHHHHHHHHH
T ss_pred ceEeeehhhhHHHHHHHHHHHHHHHHheeeCCCC-CCeEEEEeeeHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHH
Confidence 5899999999999999999999999999999998 89999999999999999886 39999999999999
Q ss_pred HHHHHhhhhccceee
Q psy7487 242 VFASLLGNYSRLACE 256 (439)
Q Consensus 242 v~~slle~~~~l~~~ 256 (439)
+++|++|+...+..+
T Consensus 81 v~~sl~~tv~V~~~~ 95 (137)
T 2lly_A 81 VTLSIVITVFVLNVH 95 (137)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHhhhhhhhhhHH
Confidence 999999986655443
No 34
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A*
Probab=99.51 E-value=2.2e-18 Score=167.51 Aligned_cols=95 Identities=32% Similarity=0.584 Sum_probs=92.0
Q ss_pred ccccccchhhHHHHHhhcceeeeeeecceeEEEEEeeeeeeeCCCCccceeeeeeeeEEEeeeccccccCCCCCccccee
Q psy7487 342 LGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSI 421 (439)
Q Consensus 342 ~~~~s~l~~~~~l~R~~~~~~~~~~~p~~l~v~~sw~~fw~~~~~~~~r~~l~~~~~lt~~~~~~~~~~~lp~vsy~kai 421 (439)
.|.|+++...++++|+.+||.++.|+|+.+++++||++||++ +.++|+++|+|++|+++++....+..+|++||+++|
T Consensus 185 ~~~y~~l~~~~~l~R~~~~y~~~~~iP~~li~~ls~~sF~lp--~~~~Rv~l~it~lL~~~~~~~~~~~~lP~~s~vp~i 262 (322)
T 3rqw_A 185 QNEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWLE--SFSERLQTSFTLMLTVVAYAFYTSNILPRLPYTTVI 262 (322)
T ss_dssp CCEEEEEEEEEEEEECCHHHHHHTHHHHHHHHHHHHGGGGCS--SHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSCCHH
T ss_pred CCCeEEEEEEEEEEEeeeeeeehHHHHHHHHHHHHHHHhccC--CCCCcEEEEEehHHHHHHHHHHHhhhCCCccchHHH
Confidence 567999999999999999999999999999999999999999 789999999999999999999999999999999999
Q ss_pred eeeehhhhhhhhhhhcc
Q psy7487 422 DVYLGTCFVMVFASLLG 438 (439)
Q Consensus 422 D~~~~~c~~~vf~~l~~ 438 (439)
|+|+.+|++|+|++++|
T Consensus 263 ~~~~~~~~~~v~~sll~ 279 (322)
T 3rqw_A 263 DQMIIAGYGSIFAAILL 279 (322)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999987
No 35
>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B
Probab=99.46 E-value=2.7e-17 Score=167.90 Aligned_cols=94 Identities=22% Similarity=0.389 Sum_probs=90.8
Q ss_pred ccccchhhHHHHHhhcceeeeeeecceeEEEEEeeeeeeeCCCCccceeeeeeeeEEEeeeccccccCCCCCcc-cceee
Q psy7487 344 NYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISY-VKSID 422 (439)
Q Consensus 344 ~~s~l~~~~~l~R~~~~~~~~~~~p~~l~v~~sw~~fw~~~~~~~~r~~l~~~~~lt~~~~~~~~~~~lp~vsy-~kaiD 422 (439)
.|+++...+.++|+.+||++|.|+|+.+++++||++||+++++ ++|+++|+|++|+++++....+..+|++|| +++||
T Consensus 227 ~y~~l~~~~~lrR~~~~Y~i~l~iP~~liv~Ls~lsF~Lp~~s-~eRvsLgiT~LLt~tvfl~~v~~~LP~tS~~vPlI~ 305 (493)
T 4aq5_B 227 SYEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPDA-GEKMSLSISALLALTVFLLLLADKVPETSLSVPIII 305 (493)
T ss_dssp SBCCEEEECCCBCCCCSSTTTTHHHHHHHHHHHHHHHHSTTTC-GGGGTHHHHHHHHHHHHHHHHHHHTTTTTTSSCCCC
T ss_pred CccEEEEEEEEEeccceeeehhhhhHHHHHHHHHhEEecCCCC-CceEEehHHHHHHHHHHHHHHHhcCCccccCCCchH
Confidence 5888999999999999999999999999999999999999995 899999999999999999999999999999 99999
Q ss_pred eeehhhhhhhhhhhcc
Q psy7487 423 VYLGTCFVMVFASLLG 438 (439)
Q Consensus 423 ~~~~~c~~~vf~~l~~ 438 (439)
+|+.+|++|+|++++|
T Consensus 306 ~y~~~~m~~v~lsll~ 321 (493)
T 4aq5_B 306 SYLMFIMILVAFSVIL 321 (493)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 9999999999999986
No 36
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A
Probab=99.44 E-value=8e-18 Score=170.28 Aligned_cols=95 Identities=19% Similarity=0.394 Sum_probs=92.0
Q ss_pred c-ccccchhhHHHHHhhcceeeeeeecceeEEEEEeeeeeeeCCCCccceeeeeeeeEEEeeeccccccCCCCCc-ccce
Q psy7487 343 G-NYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKIS-YVKS 420 (439)
Q Consensus 343 ~-~~s~l~~~~~l~R~~~~~~~~~~~p~~l~v~~sw~~fw~~~~~~~~r~~l~~~~~lt~~~~~~~~~~~lp~vs-y~ka 420 (439)
| .|+++...+.++|+.+||++|.|+|+.+++++||++||+++++. +|+++|+|++|+++++....+..+|++| |+++
T Consensus 219 ~~~y~~l~~~~~l~R~~~~Y~i~l~iP~~liv~ls~lsF~Lp~~s~-eRv~LgiT~LLt~tvfl~~v~~~LP~tS~~vpl 297 (461)
T 4aq5_A 219 DTPYLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDSG-EKMTLSISVLLSLTVFLLVIVELIPSTSSAVPL 297 (461)
T ss_dssp SCCCEEEEEEEEEECCCTHHHHHHHHHHHHHHHHHHHHHHHHHHCG-GGTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCcceEEEEEEEEecccceeeehhhhHHHHHHHHHheEecccccc-ceeehhHHHHHHHHHHHHHHHhhcCcccCCcCH
Confidence 5 78999999999999999999999999999999999999999988 9999999999999999999999999999 9999
Q ss_pred eeeeehhhhhhhhhhhcc
Q psy7487 421 IDVYLGTCFVMVFASLLG 438 (439)
Q Consensus 421 iD~~~~~c~~~vf~~l~~ 438 (439)
||+|+.+|++|+|++++|
T Consensus 298 I~~y~~~~m~~v~~sll~ 315 (461)
T 4aq5_A 298 IGKYMLFTMIFVISSIIV 315 (461)
T ss_dssp CGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999987
No 37
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E
Probab=99.42 E-value=1.5e-17 Score=169.50 Aligned_cols=97 Identities=19% Similarity=0.280 Sum_probs=93.4
Q ss_pred ccccccchhhHHHHHhhcceeeeeeecceeEEEEEeeeeeeeCCCCccceeeeeeeeEEEeeeccccccCCCCCcc-cce
Q psy7487 342 LGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISY-VKS 420 (439)
Q Consensus 342 ~~~~s~l~~~~~l~R~~~~~~~~~~~p~~l~v~~sw~~fw~~~~~~~~r~~l~~~~~lt~~~~~~~~~~~lp~vsy-~ka 420 (439)
.+.|+++...+.++|+.+||++|.|+||.+++++||++||+++++.++|+++|+|++|+++++...++..+|++|| +++
T Consensus 202 ~~~y~~l~~~~~lrR~~~~Y~i~l~iP~~liv~Ls~lsF~Lp~~a~~eRvsLgIt~LLt~tvfl~~v~~~LP~tS~~vPl 281 (488)
T 4aq5_E 202 DIDFQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNVPL 281 (488)
T ss_dssp CSCCCEEEECCEEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHHSCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCcceEEEEEEEccchhheehhHhHHHHHHHHHHHHHhcCCccccCceEEEehHHHHHHHHHHHHHHhhCCccccCccH
Confidence 3459999999999999999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred eeeeehhhhhhhhhhhcc
Q psy7487 421 IDVYLGTCFVMVFASLLG 438 (439)
Q Consensus 421 iD~~~~~c~~~vf~~l~~ 438 (439)
||+|+.+|++|++++++|
T Consensus 282 I~~y~~~~m~lv~~Sll~ 299 (488)
T 4aq5_E 282 IGKYLIFVMFVSLVIVTN 299 (488)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999986
No 38
>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C
Probab=99.34 E-value=8.5e-17 Score=165.23 Aligned_cols=96 Identities=20% Similarity=0.341 Sum_probs=92.1
Q ss_pred ccccccchhhHHHHHhhcceeeeeeecceeEEEEEeeeeeeeCCCCccceeeeeeeeEEEeeeccccccCCCCCcc-cce
Q psy7487 342 LGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISY-VKS 420 (439)
Q Consensus 342 ~~~~s~l~~~~~l~R~~~~~~~~~~~p~~l~v~~sw~~fw~~~~~~~~r~~l~~~~~lt~~~~~~~~~~~lp~vsy-~ka 420 (439)
.+.|+++...+.++|+.+||++|.|+|+.+++++||++||++++ .++|+++|+|++|+++++....+..+|++|| +++
T Consensus 230 ~~~y~~l~~~~~lrR~~~~Yii~l~iP~~liv~Ls~lsF~Lp~d-~~eRisLgIT~LLt~tvfl~~v~~~LP~tS~~vPl 308 (522)
T 4aq5_C 230 GTNYQDVTFYLIIRRKPLFYVINFITPCVLISFLAALAFYLPAE-SGEKMSTAICVLLAQAVFLLLTSQRLPETALAVPL 308 (522)
T ss_dssp SCCCEEEEEEEEEEECCSSHHHHHHHHHHHHHHHHHHHTTHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCcceEEEEEEEecccceeeeehhhHHHHHHHHHHheeecCCC-cCceEEehHHHHHHHHHHHHHHHhcCCcccCCccH
Confidence 34599999999999999999999999999999999999999999 8999999999999999999999999999998 999
Q ss_pred eeeeehhhhhhhhhhhcc
Q psy7487 421 IDVYLGTCFVMVFASLLG 438 (439)
Q Consensus 421 iD~~~~~c~~~vf~~l~~ 438 (439)
||+|+.+|+++++++++|
T Consensus 309 I~~y~~~~m~lv~lSll~ 326 (522)
T 4aq5_C 309 IGKYLMFIMSLVTGVVVN 326 (522)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999986
No 39
>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1
Probab=99.25 E-value=6.9e-14 Score=129.95 Aligned_cols=79 Identities=20% Similarity=0.297 Sum_probs=72.2
Q ss_pred eeEEEEeeehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhhh-----------hhhhhhhhhhHHHHHHHHH
Q psy7487 178 MGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVL-----------SFSIDVYLGTCFVMVFASL 246 (439)
Q Consensus 178 ~~~y~~~i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~~-----------~~~i~~~~~~~~~~v~~sl 246 (439)
+.||.+++++||+++++++|++||+|+++.++|+++|+|++|++++++.+ +|+||+|+.+|++++++|+
T Consensus 1 pl~Y~~nliiP~~li~~ls~~~F~Lp~~~~gerv~l~it~lLs~tvfl~~~~~~lP~tS~~vPli~~y~~~~m~~v~~sl 80 (260)
T 1oed_E 1 PLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNVPLIGKYLIFVMFVSMLIV 80 (260)
T ss_dssp CCSHHHHHHTHHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHH
T ss_pred CeEEEEhHHHHHHHHHHHHHHHeeeCCCCCCCeEEeehhHHHHHHHHHHHHHHhCCCCcccchhHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999997799999999999999999886 3999999999999999999
Q ss_pred hhhhccceee
Q psy7487 247 LGNYSRLACE 256 (439)
Q Consensus 247 le~~~~l~~~ 256 (439)
+++...+..+
T Consensus 81 ~~tv~vln~~ 90 (260)
T 1oed_E 81 MNCVIVLNVS 90 (260)
T ss_dssp HHHHHHHHHH
T ss_pred HHHhheeeee
Confidence 9987665443
No 40
>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A 2k59_B
Probab=99.22 E-value=9e-14 Score=126.57 Aligned_cols=78 Identities=17% Similarity=0.367 Sum_probs=71.2
Q ss_pred eeEEEEeeehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhhh-----------hhhhhhhhhhHHHHHHHHH
Q psy7487 178 MGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVL-----------SFSIDVYLGTCFVMVFASL 246 (439)
Q Consensus 178 ~~~y~~~i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~~-----------~~~i~~~~~~~~~~v~~sl 246 (439)
|.||.+++++||+++++++|++||+|+++ ++|+++|+|++|++++++.+ +|+||.|+.+|++++++|+
T Consensus 1 pl~Y~~nliiP~~li~~Ls~~~F~Lp~~s-gerv~l~it~lLs~tvfl~~v~~~lP~tS~~vPli~~y~~~~m~~v~~sl 79 (227)
T 1oed_A 1 PLYFVVNVIIPCLLFSFLTGLVFYLPTDS-GEKMTLSISVLLSLTVFLLVIVELIPSTSSAVPLIGKYMLFTMIFVISSI 79 (227)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHH
T ss_pred CeEEEehHHHHHHHHHHHHHHHheeCCCC-CCeEeehHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999998 89999999999999999886 3999999999999999999
Q ss_pred hhhhccceee
Q psy7487 247 LGNYSRLACE 256 (439)
Q Consensus 247 le~~~~l~~~ 256 (439)
+++...+..+
T Consensus 80 ~~tv~vln~~ 89 (227)
T 1oed_A 80 IITVVVINTH 89 (227)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhh
Confidence 9986655433
No 41
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B
Probab=99.20 E-value=2e-13 Score=126.03 Aligned_cols=78 Identities=23% Similarity=0.346 Sum_probs=71.3
Q ss_pred eeEEEEeeehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhhh-----------hhhhhhhhhhHHHHHHHHH
Q psy7487 178 MGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVL-----------SFSIDVYLGTCFVMVFASL 246 (439)
Q Consensus 178 ~~~y~~~i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~~-----------~~~i~~~~~~~~~~v~~sl 246 (439)
+.||.+++++||+++++++|++||+|+++ ++|+++|+|++|++++++.+ +|+||.|+.+|++++++|+
T Consensus 1 pl~Y~~nliiP~~li~~ls~~~F~Lp~ds-gerv~l~it~lLs~tvfl~~v~~~lP~tS~~vPli~~y~~~~m~~v~~sl 79 (250)
T 1oed_B 1 PLFYIVYTIIPCILISILAILVFYLPPDA-GEKMSLSISALLAVTVFLLLLADKVPETSLSVPIIIRYLMFIMILVAFSV 79 (250)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHH
T ss_pred CeEEEEhHHHHHHHHHHHHHHHheeCCCC-CCeEEehhhHHHHHHHHHHHHHHHCCCCcccCCcHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999998 89999999999999999886 3999999999999999999
Q ss_pred hhhhccceee
Q psy7487 247 LGNYSRLACE 256 (439)
Q Consensus 247 le~~~~l~~~ 256 (439)
+++...+..+
T Consensus 80 ~~tv~Vln~~ 89 (250)
T 1oed_B 80 ILSVVVLNLH 89 (250)
T ss_dssp HHHHHHHHHH
T ss_pred HHHhheeeee
Confidence 9986665433
No 42
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A
Probab=99.18 E-value=2e-13 Score=126.80 Aligned_cols=79 Identities=18% Similarity=0.284 Sum_probs=71.7
Q ss_pred eeEEEEeeehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhhh-----------hhhhhhhhhhHHHHHHHHH
Q psy7487 178 MGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVL-----------SFSIDVYLGTCFVMVFASL 246 (439)
Q Consensus 178 ~~~y~~~i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~~-----------~~~i~~~~~~~~~~v~~sl 246 (439)
+.||.+++++||+++++++|++||+|+++ ++|+++|+|++|++++++.+ +|+||.|+.+|++++++|+
T Consensus 1 pl~Y~~nliiP~~li~~ls~~~F~Lp~~~-gekv~l~it~lLs~tvfl~~~~~~lP~tS~~vPli~~y~~~~m~~v~~s~ 79 (260)
T 1oed_C 1 PLFYVINFITPCVLISFLASLAFYLPAES-GEKMSTAISVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGVI 79 (260)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHH
T ss_pred CeEEEEhHHHHHHHHHHHHHHHeeeCCCC-CCeEeehHHHHHHHHHHHHHHHHHCCCCcccchhHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999996 89999999999999999886 3999999999999999999
Q ss_pred hhhhccceeeE
Q psy7487 247 LGNYSRLACEI 257 (439)
Q Consensus 247 le~~~~l~~~~ 257 (439)
+++...+..+.
T Consensus 80 ~~tv~vl~~~~ 90 (260)
T 1oed_C 80 VNCGIVLNFHF 90 (260)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHheeeeec
Confidence 99866654443
No 43
>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A 2k59_B
Probab=99.10 E-value=1.1e-14 Score=132.68 Aligned_cols=79 Identities=20% Similarity=0.429 Sum_probs=76.0
Q ss_pred cceeeeeeecceeEEEEEeeeeeeeCCCCccceeeeeeeeEEEeeeccccccCCCCCc-ccceeeeeehhhhhhhhhhhc
Q psy7487 359 GYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKIS-YVKSIDVYLGTCFVMVFASLL 437 (439)
Q Consensus 359 ~~~~~~~~~p~~l~v~~sw~~fw~~~~~~~~r~~l~~~~~lt~~~~~~~~~~~lp~vs-y~kaiD~~~~~c~~~vf~~l~ 437 (439)
.||..+.|+||.+++++||++||+++++ ++|+++|+|++|+++.+....+..+|++| |+++||+|+.+|+++++++++
T Consensus 2 l~Y~~nliiP~~li~~Ls~~~F~Lp~~s-gerv~l~it~lLs~tvfl~~v~~~lP~tS~~vPli~~y~~~~m~~v~~sl~ 80 (227)
T 1oed_A 2 LYFVVNVIIPCLLFSFLTGLVFYLPTDS-GEKMTLSISVLLSLTVFLLVIVELIPSTSSAVPLIGKYMLFTMIFVISSII 80 (227)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHHH
T ss_pred eEEEehHHHHHHHHHHHHHHHheeCCCC-CCeEeehHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999987 89999999999999999999999999999 999999999999999999987
Q ss_pred c
Q psy7487 438 G 438 (439)
Q Consensus 438 ~ 438 (439)
|
T Consensus 81 ~ 81 (227)
T 1oed_A 81 I 81 (227)
T ss_dssp H
T ss_pred H
Confidence 6
No 44
>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1
Probab=99.10 E-value=1.8e-14 Score=133.80 Aligned_cols=80 Identities=21% Similarity=0.345 Sum_probs=77.1
Q ss_pred cceeeeeeecceeEEEEEeeeeeeeCCCCccceeeeeeeeEEEeeeccccccCCCCCc-ccceeeeeehhhhhhhhhhhc
Q psy7487 359 GYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKIS-YVKSIDVYLGTCFVMVFASLL 437 (439)
Q Consensus 359 ~~~~~~~~~p~~l~v~~sw~~fw~~~~~~~~r~~l~~~~~lt~~~~~~~~~~~lp~vs-y~kaiD~~~~~c~~~vf~~l~ 437 (439)
.||..+.|+||.+++++||++||+++++.++|+++|+|++|+++.+....+..+|++| |+++||+|+.+|+++++++++
T Consensus 2 l~Y~~nliiP~~li~~ls~~~F~Lp~~~~gerv~l~it~lLs~tvfl~~~~~~lP~tS~~vPli~~y~~~~m~~v~~sl~ 81 (260)
T 1oed_E 2 LFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNVPLIGKYLIFVMFVSMLIVM 81 (260)
T ss_dssp CSHHHHHHTHHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHH
T ss_pred eEEEEhHHHHHHHHHHHHHHHeeeCCCCCCCeEEeehhHHHHHHHHHHHHHHhCCCCcccchhHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999998899999999999999999999999999999 999999999999999999987
Q ss_pred c
Q psy7487 438 G 438 (439)
Q Consensus 438 ~ 438 (439)
+
T Consensus 82 ~ 82 (260)
T 1oed_E 82 N 82 (260)
T ss_dssp H
T ss_pred H
Confidence 5
No 45
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=99.06 E-value=1.9e-14 Score=106.01 Aligned_cols=60 Identities=48% Similarity=0.768 Sum_probs=54.6
Q ss_pred cceeeecceeeEEEEEEeeccccccCCCeeEeeeeeEEEeeeeEEeeeecccc--cccchhh
Q psy7487 292 TVARVNLGVTTVLTMTTLMSSTNAALPKVSYIKSIDVYLGTCFVMVFACLLGN--YSRLACE 351 (439)
Q Consensus 292 ~~~r~~l~~~~~lt~~~~~~~~~~~LP~~~y~~~~d~~~~~c~~~~~~~l~~~--~s~l~~~ 351 (439)
+|+|+.||+|++||++++..+.+.+|||++|+|++|+|++.|+.|+|++++|+ ++++..+
T Consensus 1 ~paRv~LGittvLtmtt~~~~~~~~lPkVSYikAiDvw~~~C~~FVF~aLlEya~V~y~~r~ 62 (76)
T 1vry_A 1 LPARVGLGITTVLTLTTQSSGSRASLPKVSYVKAIDIWLAVCLLFVFSALLEYAAVNFVSRK 62 (76)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCTTTCCCSHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred CCceEEechHHHHHHHHHhcCcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 48999999999999999999999999999999999999999999999999999 6655433
No 46
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B
Probab=99.05 E-value=2.7e-14 Score=131.89 Aligned_cols=79 Identities=25% Similarity=0.405 Sum_probs=76.0
Q ss_pred cceeeeeeecceeEEEEEeeeeeeeCCCCccceeeeeeeeEEEeeeccccccCCCCCc-ccceeeeeehhhhhhhhhhhc
Q psy7487 359 GYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKIS-YVKSIDVYLGTCFVMVFASLL 437 (439)
Q Consensus 359 ~~~~~~~~~p~~l~v~~sw~~fw~~~~~~~~r~~l~~~~~lt~~~~~~~~~~~lp~vs-y~kaiD~~~~~c~~~vf~~l~ 437 (439)
.||..+.|+||.+++++||++||+++++ ++|+++|+|++|+++.+....+..+|++| |+++||+|+.+|+++++++++
T Consensus 2 l~Y~~nliiP~~li~~ls~~~F~Lp~ds-gerv~l~it~lLs~tvfl~~v~~~lP~tS~~vPli~~y~~~~m~~v~~sl~ 80 (250)
T 1oed_B 2 LFYIVYTIIPCILISILAILVFYLPPDA-GEKMSLSISALLAVTVFLLLLADKVPETSLSVPIIIRYLMFIMILVAFSVI 80 (250)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHH
T ss_pred eEEEEhHHHHHHHHHHHHHHHheeCCCC-CCeEEehhhHHHHHHHHHHHHHHHCCCCcccCCcHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999987 79999999999999999999999999999 999999999999999999987
Q ss_pred c
Q psy7487 438 G 438 (439)
Q Consensus 438 ~ 438 (439)
|
T Consensus 81 ~ 81 (250)
T 1oed_B 81 L 81 (250)
T ss_dssp H
T ss_pred H
Confidence 6
No 47
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A
Probab=98.78 E-value=1.1e-12 Score=121.95 Aligned_cols=79 Identities=20% Similarity=0.388 Sum_probs=75.3
Q ss_pred cceeeeeeecceeEEEEEeeeeeeeCCCCccceeeeeeeeEEEeeeccccccCCCCCc-ccceeeeeehhhhhhhhhhhc
Q psy7487 359 GYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKIS-YVKSIDVYLGTCFVMVFASLL 437 (439)
Q Consensus 359 ~~~~~~~~~p~~l~v~~sw~~fw~~~~~~~~r~~l~~~~~lt~~~~~~~~~~~lp~vs-y~kaiD~~~~~c~~~vf~~l~ 437 (439)
.||..+.++||.+++++||++||++++ .++|+++|+|++|+++.+...++..+|+.| |++.||+|+.+|+++++++++
T Consensus 2 l~Y~~nliiP~~li~~ls~~~F~Lp~~-~gekv~l~it~lLs~tvfl~~~~~~lP~tS~~vPli~~y~~~~m~~v~~s~~ 80 (260)
T 1oed_C 2 LFYVINFITPCVLISFLASLAFYLPAE-SGEKMSTAISVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGVIV 80 (260)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHHH
T ss_pred eEEEEhHHHHHHHHHHHHHHHeeeCCC-CCCeEeehHHHHHHHHHHHHHHHHHCCCCcccchhHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999998 579999999999999999999999999999 999999999999999999987
Q ss_pred c
Q psy7487 438 G 438 (439)
Q Consensus 438 ~ 438 (439)
+
T Consensus 81 ~ 81 (260)
T 1oed_C 81 N 81 (260)
T ss_dssp H
T ss_pred H
Confidence 5
No 48
>1mot_A Glycine receptor alpha-1 chain; second transmembrane domain, micelles, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=97.08 E-value=1.2e-05 Score=47.38 Aligned_cols=28 Identities=68% Similarity=0.914 Sum_probs=26.2
Q ss_pred CccceeeeeeeeEEEeeeccccccCCCC
Q psy7487 387 TPARVALGVTTVLTMTTLMSSTNAALPK 414 (439)
Q Consensus 387 ~~~r~~l~~~~~lt~~~~~~~~~~~lp~ 414 (439)
.|||+++|++++|+++++..+.+.++||
T Consensus 1 ~paRv~LGittvLt~tt~~~~~~~~lPk 28 (28)
T 1mot_A 1 APARVGLGITTVLTMTTQSSGSRASLPK 28 (28)
T ss_dssp CCHHHHHHHHHHHHHCCSSSSSSSSCCC
T ss_pred CCceEEEcchhHHHHHHHHhhHhhhCCC
Confidence 4899999999999999999999999996
No 49
>1mot_A Glycine receptor alpha-1 chain; second transmembrane domain, micelles, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=96.31 E-value=6.4e-05 Score=44.19 Aligned_cols=28 Identities=64% Similarity=0.801 Sum_probs=26.2
Q ss_pred cceeeecceeeEEEEEEeeccccccCCC
Q psy7487 292 TVARVNLGVTTVLTMTTLMSSTNAALPK 319 (439)
Q Consensus 292 ~~~r~~l~~~~~lt~~~~~~~~~~~LP~ 319 (439)
+|+|+.+|++++||++++..+.+.++||
T Consensus 1 ~paRv~LGittvLt~tt~~~~~~~~lPk 28 (28)
T 1mot_A 1 APARVGLGITTVLTMTTQSSGSRASLPK 28 (28)
T ss_dssp CCHHHHHHHHHHHHHCCSSSSSSSSCCC
T ss_pred CCceEEEcchhHHHHHHHHhhHhhhCCC
Confidence 4899999999999999999999999996
No 50
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ...
Probab=33.47 E-value=2.6 Score=37.70 Aligned_cols=26 Identities=8% Similarity=-0.049 Sum_probs=15.6
Q ss_pred ccccccchhhHHHHHhhcceeeeeee
Q psy7487 342 LGNYSRLACEIQFVRSMGYYLIQIYI 367 (439)
Q Consensus 342 ~~~~s~l~~~~~l~R~~~~~~~~~~~ 367 (439)
.|.|+++...|+++|+.+||++|..+
T Consensus 201 ~~~y~~l~~~~~l~R~~~fYii~lil 226 (228)
T 2wn9_A 201 PEPYIDVNLVVKFRERRAGNGFFRNL 226 (228)
T ss_dssp SSCEEEEEEEEEEEECC---------
T ss_pred CCCeeEEEEEEEEEEeccceEEEEEE
Confidence 47799999999999999999998754
No 51
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A*
Probab=21.10 E-value=17 Score=31.68 Aligned_cols=23 Identities=9% Similarity=0.184 Sum_probs=18.0
Q ss_pred cccccccchhhHHHHHhhcceee
Q psy7487 341 LLGNYSRLACEIQFVRSMGYYLI 363 (439)
Q Consensus 341 l~~~~s~l~~~~~l~R~~~~~~~ 363 (439)
-.|.|+.+...|.++|+.+||++
T Consensus 189 ~~~~y~~l~~~~~l~R~~~yyil 211 (211)
T 1uw6_A 189 CPEAYEDVEVSLNFRKKGRSEIL 211 (211)
T ss_dssp CSSEEEEEEEEEEEEECCCC---
T ss_pred CCCCcceEEEEEEEEEccceeEC
Confidence 35779999999999999999974
Done!