RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7487
(439 letters)
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane
protein, transport protein, Cys-loop receptor, LIGA ION
channel, neurotransmitter receptor; HET: NAG IVM LMT
UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A*
3rif_A*
Length = 347
Score = 294 bits (755), Expect = 3e-97
Identities = 100/248 (40%), Positives = 138/248 (55%), Gaps = 11/248 (4%)
Query: 11 RSEDFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIAT 70
+ +++ R+ W D RL++ + + V IW+PDTFF NEKQ+Y H
Sbjct: 45 VNMEYSAQLTLRESWIDKRLSYGVKGDGQPDFVILTVGHQIWMPDTFFPNEKQAYKHTID 104
Query: 71 TSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNE 130
N IRIH+ G++ S+R+++ SCPM LQY+PMD Q C I++ S+ YT +DI Y W E
Sbjct: 105 KPNVLIRIHNDGTVLYSVRISLVLSCPMYLQYYPMDVQQCSIDLASYAYTTKDIEYLWKE 164
Query: 131 G-PNSVGVSNEVSLPQFKVLGHRQKDLEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPS 189
P + V SLP F++ TG YS L IQ R +YL+Q+YIPS
Sbjct: 165 HSPLQLKVGLSSSLPSFQLTNTSTTYCTSVTNTGIYSCLRTTIQLKREFSFYLLQLYIPS 224
Query: 190 SLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVLSFS----------IDVYLGTCF 239
++V +SWVSFW +R A PARV LGVTT+LTMT S IDV++G C
Sbjct: 225 CMLVIVSWVSFWFDRTAIPARVTLGVTTLLTMTAQSAGINSQLPPVSYIKAIDVWIGACM 284
Query: 240 VMVFASLL 247
+F +LL
Sbjct: 285 TFIFCALL 292
Score = 142 bits (359), Expect = 8e-39
Identities = 51/98 (52%), Positives = 68/98 (69%)
Query: 340 CLLGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVL 399
G YS L IQ R +YL+Q+YIPS ++VI+SWVSFW +R A PARV LGVTT+L
Sbjct: 195 TNTGIYSCLRTTIQLKREFSFYLLQLYIPSCMLVIVSWVSFWFDRTAIPARVTLGVTTLL 254
Query: 400 TMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLL 437
TMT + N+ LP +SY+K+IDV++G C +F +LL
Sbjct: 255 TMTAQSAGINSQLPPVSYIKAIDVWIGACMTFIFCALL 292
Score = 134 bits (338), Expect = 8e-36
Identities = 57/141 (40%), Positives = 76/141 (53%), Gaps = 8/141 (5%)
Query: 248 GNYSRLACEIQFVRSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMT 307
G YS L IQ R +YL+Q+Y+PS ++V +SWVSFW +R A ARV LGVTT+LTMT
Sbjct: 198 GIYSCLRTTIQLKREFSFYLLQLYIPSCMLVIVSWVSFWFDRTAIPARVTLGVTTLLTMT 257
Query: 308 TLMSSTNAALPKVSYIKSIDVYLGTCFVMVFACLL-----GNYSRLACEIQFVRSMGYYL 362
+ N+ LP VSYIK+IDV++G C +F LL + + S L
Sbjct: 258 AQSAGINSQLPPVSYIKAIDVWIGACMTFIFCALLEFALVNHIANAGTTEWNDISKRVDL 317
Query: 363 IQIYIPSGLIV---IISWVSF 380
I + L I+ W F
Sbjct: 318 ISRALFPVLFFVFNILYWSRF 338
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi;
membrane, transport protein; HET: ACH MES; 2.91A
{Dickeya dadantii} PDB: 3rqu_A* 3uq4_A 3uq5_A 3uq7_A
2vl0_A 2yks_A
Length = 322
Score = 280 bits (718), Expect = 5e-92
Identities = 54/258 (20%), Positives = 98/258 (37%), Gaps = 29/258 (11%)
Query: 11 RSEDFTLDFYFRQFWTDPRLAFR--QRPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHI 68
+ + +D Y WT + VE + +WVP F+N
Sbjct: 29 LEQTYKVDGYIVAQWTGKPRKTPGDKPLIVENTQIERWINNGLWVPALEFINVV----GS 84
Query: 69 ATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKW 128
T N+ + + G + + R + S M+ + FP DRQ +E+E F Y + +R+
Sbjct: 85 PDTGNKRLMLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQFVLELEPFSYNNQQLRFSD 144
Query: 129 NEGPNSVGVSNEVSLPQFKVLGHRQKDLE---------ISLTTGNYSRLACEIQFVRSMG 179
+ + + ++ + G + + +SR+ I VR+
Sbjct: 145 IQVY--TENIDNEEIDEWWIRGKASTHISDIRYDHLSSVQPNQNEFSRITVRIDAVRNPS 202
Query: 180 YYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVLSFS--------- 230
YYL +P LI+A SW FWL + R+ T +LT+ + +
Sbjct: 203 YYLWSFILPLGLIIAASWSVFWL--ESFSERLQTSFTLMLTVVAYAFYTSNILPRLPYTT 260
Query: 231 -IDVYLGTCFVMVFASLL 247
ID + + +FA++L
Sbjct: 261 VIDQMIIAGYGSIFAAIL 278
Score = 154 bits (391), Expect = 1e-43
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 343 GNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMT 402
+SR+ I VR+ YYL +P GLI+ SW FWL + R+ T +LT+
Sbjct: 186 NEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWLE--SFSERLQTSFTLMLTVV 243
Query: 403 TLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLL 437
T+ LP++ Y ID + + +FA++L
Sbjct: 244 AYAFYTSNILPRLPYTTVIDQMIIAGYGSIFAAIL 278
Score = 148 bits (375), Expect = 3e-41
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Query: 248 GNYSRLACEIQFVRSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMT 307
+SR+ I VR+ YYL +P LI+A SW FWL + R+ T +LT+
Sbjct: 186 NEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWLE--SFSERLQTSFTLMLTVV 243
Query: 308 TLMSSTNAALPKVSYIKSIDVYLGTCFVMVFACLL 342
T+ LP++ Y ID + + +FA +L
Sbjct: 244 AYAFYTSNILPRLPYTTVIDQMIIAGYGSIFAAIL 278
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein,
transport protei; HET: LMT; 2.60A {Gloeobacter
violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A*
3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A*
3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A
...
Length = 321
Score = 279 bits (715), Expect = 1e-91
Identities = 50/249 (20%), Positives = 99/249 (39%), Gaps = 22/249 (8%)
Query: 11 RSEDFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIAT 70
+E F ++ + W D RLAF P + V + + IW+P+ FVN + +
Sbjct: 37 CAETFKVNAFLSLSWKDRRLAFD--PVRSGVRVKTYEPEAIWIPEIRFVNVENARDADVV 94
Query: 71 TSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNE 130
I + G++ R + P++ + +P D Q HI + R+I +
Sbjct: 95 ----DISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVLAVDL 150
Query: 131 GPNSVGVSNEVSLPQFKVLGHRQKDLEISLTTGN--YSRLACEIQFVRSMGYYLIQIYIP 188
VG +++V L + + + + S+L +++ R Y+ I +P
Sbjct: 151 --EKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPNIILP 208
Query: 189 SSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVLSFS----------IDVYLGTC 238
I+ ISW +FW + A V L V+T++ +L + +
Sbjct: 209 MLFILFISWTAFWS--TSYEANVTLVVSTLIAHIAFNILVETCLPKTPYMTYTGAIIFMI 266
Query: 239 FVMVFASLL 247
++ F +++
Sbjct: 267 YLFYFVAVI 275
Score = 148 bits (375), Expect = 3e-41
Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 335 VMVFACLLGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALG 394
FA S+L +++ R Y+ I +P I+ ISW +FW + A V L
Sbjct: 175 PANFALEDRLESKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFWST--SYEANVTLV 232
Query: 395 VTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLL 437
V+T++ LPK Y+ + ++ F +++
Sbjct: 233 VSTLIAHIAFNILVETCLPKTPYMTYTGAIIFMIYLFYFVAVI 275
Score = 138 bits (351), Expect = 8e-38
Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 248 GNYSRLACEIQFVRSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMT 307
S+L +++ R Y+ I +P + I+ ISW +FW + A V L V+T++
Sbjct: 183 RLESKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFWST--SYEANVTLVVSTLIAHI 240
Query: 308 TLMSSTNAALPKVSYIKSIDVYLGTCFVMVFACLL 342
LPK Y+ + ++ F ++
Sbjct: 241 AFNILVETCLPKTPYMTYTGAIIFMIYLFYFVAVI 275
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport
protein; 2.30A {Gloeobacter violaceus}
Length = 201
Score = 204 bits (520), Expect = 4e-64
Identities = 36/185 (19%), Positives = 71/185 (38%), Gaps = 10/185 (5%)
Query: 2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIKNIWVPDTFFVNE 61
L L ++E F ++ + W D RLAF P + V + + IW+P+ FVN
Sbjct: 24 LIECYSLDDKAETFKVNAFLSLSWKDRRLAFD--PVRSGVRVKTYEPEAIWIPEIRFVNV 81
Query: 62 KQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTM 121
+ + I + G++ R + P++ + D Q HI +
Sbjct: 82 ENARDADVVD----ISVSPDGTVQYLERFSARVLSPLDGRRTESDSQTLHIYLIVRSVDT 137
Query: 122 RDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLEISLTTGN--YSRLACEIQFVRSMG 179
R+I + VG +++V L + + + + S+L +++ R G
Sbjct: 138 RNIVLAVDLEK--VGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQGG 195
Query: 180 YYLIQ 184
++
Sbjct: 196 HHHHH 200
Score = 31.1 bits (71), Expect = 0.43
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 335 VMVFACLLGNYSRLACEIQFVRSMGYYLIQ 364
FA S+L +++ R G++
Sbjct: 171 PANFALEDRLESKLDYQLRISRQGGHHHHH 200
Score = 29.6 bits (67), Expect = 1.6
Identities = 7/41 (17%), Positives = 16/41 (39%)
Query: 229 FSIDVYLGTCFVMVFASLLGNYSRLACEIQFVRSMGYYLIQ 269
+ I+ + FA S+L +++ R G++
Sbjct: 160 WDIESFTAVVKPANFALEDRLESKLDYQLRISRQGGHHHHH 200
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 96.5 bits (240), Expect = 3e-22
Identities = 43/262 (16%), Positives = 102/262 (38%), Gaps = 24/262 (9%)
Query: 2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAF--RQRPGVETLSVGSDFIKNIWVPDTFFV 59
L ++ + ++ + RQ W D RL + G++ + + SD ++W+PD
Sbjct: 37 LIQLINVDEVNQIVETNVRLRQQWIDVRLRWNPADYGGIKKIRLPSD---DVWLPDLVLY 93
Query: 60 NEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGY 119
N F I + + + ++G I + + C + + +FP D+Q C +++ + Y
Sbjct: 94 NNADGDFAIVHMTK--LLLDYTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTY 151
Query: 120 TMRDIRYKWNEGPNSVGV---SNEVSLPQFKVLGHRQKDLEISLTTGNYSRLACEIQFVR 176
+ + S E + ++ H Y + R
Sbjct: 152 DGTKVSISPESDRPDLSTFMESGEWVMKDYRGWKHWVYYT--CCPDTPYLDITYHFIMQR 209
Query: 177 SMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVLSFS------ 230
Y+++ + IP L ++ + F+L ++ ++ L ++ +L++T ++
Sbjct: 210 IPLYFVVNVIIPCLLFSFLTVLVFYLPTDS-GEKMTLSISVLLSLTVFLLVIVELIPSTS 268
Query: 231 -----IDVYLGTCFVMVFASLL 247
I Y+ + V +S++
Sbjct: 269 SAVPLIGKYMLFTMIFVISSII 290
Score = 46.8 bits (111), Expect = 7e-06
Identities = 19/99 (19%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Query: 340 CLLGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVL 399
C Y + R Y+++ + IP L ++ + F+L ++ ++ L ++ +L
Sbjct: 193 CPDTPYLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDS-GEKMTLSISVLL 251
Query: 400 TMTTLMSSTNAALPKIS-YVKSIDVYLGTCFVMVFASLL 437
++T + +P S V I Y+ + V +S++
Sbjct: 252 SLTVFLLVIVELIPSTSSAVPLIGKYMLFTMIFVISSII 290
Score = 44.5 bits (105), Expect = 5e-05
Identities = 15/94 (15%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 250 YSRLACEIQFVRSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMTTL 309
Y + R Y+++ + +P +L ++ + F+L + ++ L ++ +L++T
Sbjct: 198 YLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYL-PTDSGEKMTLSISVLLSLTVF 256
Query: 310 MSSTNAALPKVS-YIKSIDVYLGTCFVMVFACLL 342
+ +P S + I Y+ + V + ++
Sbjct: 257 LLVIVELIPSTSSAVPLIGKYMLFTMIFVISSII 290
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 96.5 bits (240), Expect = 4e-22
Identities = 45/264 (17%), Positives = 99/264 (37%), Gaps = 26/264 (9%)
Query: 2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQRP----GVETLSVGSDFIKNIWVPDTF 57
L +++ L + E T + + W D RL G++ + + S+ +W+PD
Sbjct: 36 LTNLISLNEKEEALTTNVWIEIQWNDYRL--SWNTSEYEGIDLVRIPSE---LLWLPDVV 90
Query: 58 FVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESF 117
N F +A +N + +++ GS+ ++CP+ + YFP D Q C + S
Sbjct: 91 LENNVDGQFEVAYYAN--VLVYNDGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQ 148
Query: 118 GYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLG---HRQKDLEISLTTGNYSRLACEIQF 174
Y ++ + + ++ + + + +++ ++ + +
Sbjct: 149 TYNAHEVNL-QLSAEEGIDPEDFTENGEWTIRHRPAKKNYNWQLTKDDIDFQEIIFFLII 207
Query: 175 VRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVLSFS---- 230
R +Y+I I P LI ++ + ++L A + L ++ +L T L
Sbjct: 208 QRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPE 267
Query: 231 -------IDVYLGTCFVMVFASLL 247
I YL + +
Sbjct: 268 TSLNVPLIGKYLIFVMFVSLVIVT 291
Score = 50.3 bits (120), Expect = 6e-07
Identities = 17/99 (17%), Positives = 36/99 (36%), Gaps = 1/99 (1%)
Query: 340 CLLGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVL 399
++ + + R +Y+I I P LI + + ++L A + L ++ +L
Sbjct: 193 KDDIDFQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLL 252
Query: 400 TMTTLMSSTNAALPKISYVKS-IDVYLGTCFVMVFASLL 437
T + +P+ S I YL + +
Sbjct: 253 AQTIFLFLIAQKVPETSLNVPLIGKYLIFVMFVSLVIVT 291
Score = 46.0 bits (109), Expect = 1e-05
Identities = 17/94 (18%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
Query: 250 YSRLACEIQFVRSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMTTL 309
+ + + R +Y+I I P +LI ++ + ++L A + L ++ +L T
Sbjct: 198 FQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIF 257
Query: 310 MSSTNAALPKVS-YIKSIDVYLGTCFVMVFACLL 342
+ +P+ S + I YL + +
Sbjct: 258 LFLIAQKVPETSLNVPLIGKYLIFVMFVSLVIVT 291
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 369
Score = 95.3 bits (237), Expect = 8e-22
Identities = 50/259 (19%), Positives = 99/259 (38%), Gaps = 21/259 (8%)
Query: 2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQR--PGVETLSVGSDFIKNIWVPDTFFV 59
L +++ LK E T + + W D RL + + L + + IW+PD
Sbjct: 39 LSNLISLKETDETLTTNVWMDHAWYDHRLTWNASEYSDISILRLRPE---LIWIPDIVLQ 95
Query: 60 NEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGY 119
N +++A N + + +G +T +SCP+N+ YFP D Q C ++ + Y
Sbjct: 96 NNNDGQYNVAYFCN--VLVRPNGYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNY 153
Query: 120 TMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLEISLTTGNYSRLACEIQFVRSMG 179
+I P + + E + + D + T Y + + R
Sbjct: 154 NANEISMDLIIDPEAFTENGEWEIIHKPAKKNIYGDKFPNGTN--YQDVTFYLIIRRKPL 211
Query: 180 YYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVLSFS--------- 230
+Y+I P LI ++ ++F+L + +++ + +L +L+
Sbjct: 212 FYVINFITPCVLISFLAALAFYL-PAESGEKMSTAICVLLAQAVFLLLTSQRLPETALAV 270
Query: 231 --IDVYLGTCFVMVFASLL 247
I YL +V ++
Sbjct: 271 PLIGKYLMFIMSLVTGVVV 289
Score = 45.3 bits (107), Expect = 2e-05
Identities = 16/83 (19%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 356 RSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKI 415
R +Y+I P LI ++ ++F+L + +++ + +L + T+ LP+
Sbjct: 208 RKPLFYVINFITPCVLISFLAALAFYL-PAESGEKMSTAICVLLAQAVFLLLTSQRLPET 266
Query: 416 SYVKS-IDVYLGTCFVMVFASLL 437
+ I YL +V ++
Sbjct: 267 ALAVPLIGKYLMFIMSLVTGVVV 289
Score = 43.3 bits (102), Expect = 1e-04
Identities = 16/83 (19%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 261 RSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMTTLMSSTNAALPKV 320
R +Y+I P +LI ++ ++F+L + +++ + +L + T+ LP+
Sbjct: 208 RKPLFYVINFITPCVLISFLAALAFYL-PAESGEKMSTAICVLLAQAVFLLLTSQRLPET 266
Query: 321 S-YIKSIDVYLGTCFVMVFACLL 342
+ + I YL +V ++
Sbjct: 267 ALAVPLIGKYLMFIMSLVTGVVV 289
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_E
Length = 488
Score = 96.0 bits (238), Expect = 1e-21
Identities = 47/270 (17%), Positives = 99/270 (36%), Gaps = 31/270 (11%)
Query: 2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQRP----GVETLSVGSDFIKNIWVPDTF 57
L +++ L + E T + + W D RL G++ + + S+ +W+PD
Sbjct: 36 LTNLISLNEKEEALTTNVWIEIQWNDYRL--SWNTSEYEGIDLVRIPSE---LLWLPDVV 90
Query: 58 FVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESF 117
N F +A +N + +++ GS+ ++CP+ + YFP D Q C + S
Sbjct: 91 LENNVDGQFEVAYYAN--VLVYNDGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQ 148
Query: 118 GYTMRDIRYKWNEGPNSVGVSNEVSLPQF---------KVLGHRQKDLEISLTTGNYSRL 168
Y ++ + + V + F + + +++ ++ +
Sbjct: 149 TYNAHEVNLQLSAEEGEVVEWIHIDPEDFTENGEWTIRHRPAKKNYNWQLTKDDIDFQEI 208
Query: 169 ACEIQFVRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVLS 228
+ R +Y+I I P LI ++ + ++L A + L ++ +L T L
Sbjct: 209 IFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLI 268
Query: 229 FS-----------IDVYLGTCFVMVFASLL 247
I YL + +
Sbjct: 269 AQKVPETSLNVPLIGKYLIFVMFVSLVIVT 298
Score = 45.5 bits (107), Expect = 2e-05
Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Query: 360 YYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKIS-YV 418
+Y+I I P LI + + ++L A + L ++ +L T + +P+ S V
Sbjct: 220 FYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNV 279
Query: 419 KSIDVYLGTCFVMVFASLL 437
I YL + +
Sbjct: 280 PLIGKYLIFVMFVSLVIVT 298
Score = 42.4 bits (99), Expect = 2e-04
Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 265 YYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMTTLMSSTNAALPKVS-YI 323
+Y+I I P +LI ++ + ++L A + L ++ +L T + +P+ S +
Sbjct: 220 FYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNV 279
Query: 324 KSIDVYLGTCFVMVFACLL 342
I YL + +
Sbjct: 280 PLIGKYLIFVMFVSLVIVT 298
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 93.8 bits (233), Expect = 3e-21
Identities = 54/261 (20%), Positives = 110/261 (42%), Gaps = 25/261 (9%)
Query: 2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQRP----GVETLSVGSDFIKNIWVPDTF 57
L S+L L ++E+ T + WTD RL + P G++ LS+ SD ++W PD
Sbjct: 37 LTSLLILNEKNEEMTTSVFLNLAWTDYRL--QWDPAAYEGIKDLSIPSD---DVWQPDIV 91
Query: 58 FVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESF 117
+N F I N + + H+G+++ +SC + + YFP D Q C + +S+
Sbjct: 92 LMNNNDGSFEITLHVN--VLVQHTGAVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSY 149
Query: 118 GYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLEISLTTGNYSRLACEIQFVRS 177
Y ++ + + + Q+ + + +Y + + R
Sbjct: 150 TYDTSEVILQ-HALDAMINQDAFTENGQWSIEHKPSR-KNWRSDDPSYEDVTFYLIIQRK 207
Query: 178 MGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVLSFS------- 230
+Y++ +P LI ++ + F+L + +++L ++ +L +T +L
Sbjct: 208 PLFYIVYTIVPCILISILAILVFYLPPD-AGEKMSLSISALLALTVFLLLLADKVPETSL 266
Query: 231 ----IDVYLGTCFVMVFASLL 247
I YL ++V S++
Sbjct: 267 SVPIIISYLMFIMILVAFSVI 287
Score = 47.9 bits (114), Expect = 3e-06
Identities = 19/99 (19%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Query: 340 CLLGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVL 399
+Y + + R +Y++ +P LI I++ + F+L + +++L ++ +L
Sbjct: 190 SDDPSYEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPD-AGEKMSLSISALL 248
Query: 400 TMTTLMSSTNAALPKISYVKS-IDVYLGTCFVMVFASLL 437
+T + +P+ S I YL ++V S++
Sbjct: 249 ALTVFLLLLADKVPETSLSVPIIISYLMFIMILVAFSVI 287
Score = 44.5 bits (105), Expect = 4e-05
Identities = 19/95 (20%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 249 NYSRLACEIQFVRSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMTT 308
+Y + + R +Y++ VP ILI ++ + F+L +++L ++ +L +T
Sbjct: 194 SYEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLP-PDAGEKMSLSISALLALTV 252
Query: 309 LMSSTNAALPKVS-YIKSIDVYLGTCFVMVFACLL 342
+ +P+ S + I YL ++V ++
Sbjct: 253 FLLLLADKVPETSLSVPIIISYLMFIMILVAFSVI 287
>4aq5_B Acetylcholine receptor beta subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_B
Length = 493
Score = 90.2 bits (223), Expect = 1e-19
Identities = 59/268 (22%), Positives = 114/268 (42%), Gaps = 30/268 (11%)
Query: 2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQRP----GVETLSVGSDFIKNIWVPDTF 57
L S+L L ++E+ T + WTD RL + P G++ LS+ SD ++W PD
Sbjct: 61 LTSLLILNEKNEEMTTSVFLNLAWTDYRL--QWDPAAYEGIKDLSIPSD---DVWQPDIV 115
Query: 58 FVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESF 117
+N F I N + + H+G+++ +SC + + YFP D Q C + +S+
Sbjct: 116 LMNNNDGSFEITLHVN--VLVQHTGAVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSY 173
Query: 118 GYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLEISLTTGNYSRLACEIQFV-- 175
Y ++ + E+ + Q + Q +E + N+ + V
Sbjct: 174 TYDTSEVILQHALDAKGEREVKEIMINQDAFTENGQWSIEHKPSRKNWRSDDPSYEDVTF 233
Query: 176 -----RSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVLSFS 230
R +Y++ +P LI ++ + F+L +A +++L ++ +L +T +L
Sbjct: 234 YLIIQRKPLFYIVYTIVPCILISILAILVFYLPPDA-GEKMSLSISALLALTVFLLLLAD 292
Query: 231 -----------IDVYLGTCFVMVFASLL 247
I YL ++V S++
Sbjct: 293 KVPETSLSVPIIISYLMFIMILVAFSVI 320
Score = 42.8 bits (100), Expect = 2e-04
Identities = 19/79 (24%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 360 YYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKIS-YV 418
+Y++ +P LI I++ + F+L +A +++L ++ +L +T + +P+ S V
Sbjct: 243 FYIVYTIVPCILISILAILVFYLPPDA-GEKMSLSISALLALTVFLLLLADKVPETSLSV 301
Query: 419 KSIDVYLGTCFVMVFASLL 437
I YL ++V S++
Sbjct: 302 PIIISYLMFIMILVAFSVI 320
Score = 40.1 bits (93), Expect = 0.001
Identities = 17/79 (21%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 265 YYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMTTLMSSTNAALPKVS-YI 323
+Y++ VP ILI ++ + F+L +++L ++ +L +T + +P+ S +
Sbjct: 243 FYIVYTIVPCILISILAILVFYL-PPDAGEKMSLSISALLALTVFLLLLADKVPETSLSV 301
Query: 324 KSIDVYLGTCFVMVFACLL 342
I YL ++V ++
Sbjct: 302 PIIISYLMFIMILVAFSVI 320
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_A
Length = 461
Score = 88.1 bits (218), Expect = 5e-19
Identities = 45/262 (17%), Positives = 108/262 (41%), Gaps = 24/262 (9%)
Query: 2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQR--PGVETLSVGSDFIKNIWVPDTFFV 59
L ++ + ++ + RQ W D RL + G++ + + SD ++W+PD
Sbjct: 61 LIQLINVDEVNQIVETNVRLRQQWIDVRLRWNPADYGGIKKIRLPSD---DVWLPDLVLY 117
Query: 60 NEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGY 119
N F I + + + ++G I + + C + + +FP D+Q C +++ + Y
Sbjct: 118 NNADGDFAIVHMTK--LLLDYTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTY 175
Query: 120 TMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLEISLTTGN---YSRLACEIQFVR 176
+ + +S + ++ + +R + T Y + R
Sbjct: 176 DGTKVSISPES--DRPDLSTFMESGEWVMKDYRGWKHWVYYTCCPDTPYLDITYHFIMQR 233
Query: 177 SMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVL------SFS 230
Y+++ + IP L ++ + F+L ++ ++ L ++ +L++T ++ S S
Sbjct: 234 IPLYFVVNVIIPCLLFSFLTVLVFYLPTDS-GEKMTLSISVLLSLTVFLLVIVELIPSTS 292
Query: 231 IDV-----YLGTCFVMVFASLL 247
V Y+ + V +S++
Sbjct: 293 SAVPLIGKYMLFTMIFVISSII 314
Score = 42.3 bits (99), Expect = 2e-04
Identities = 16/79 (20%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 360 YYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKIS-YV 418
Y+++ + IP L ++ + F+L ++ ++ L ++ +L++T + +P S V
Sbjct: 237 YFVVNVIIPCLLFSFLTVLVFYLPTDS-GEKMTLSISVLLSLTVFLLVIVELIPSTSSAV 295
Query: 419 KSIDVYLGTCFVMVFASLL 437
I Y+ + V +S++
Sbjct: 296 PLIGKYMLFTMIFVISSII 314
Score = 40.8 bits (95), Expect = 8e-04
Identities = 13/79 (16%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 265 YYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMTTLMSSTNAALPKVS-YI 323
Y+++ + +P +L ++ + F+L + ++ L ++ +L++T + +P S +
Sbjct: 237 YFVVNVIIPCLLFSFLTVLVFYL-PTDSGEKMTLSISVLLSLTVFLLVIVELIPSTSSAV 295
Query: 324 KSIDVYLGTCFVMVFACLL 342
I Y+ + V + ++
Sbjct: 296 PLIGKYMLFTMIFVISSII 314
>4aq5_C Acetylcholine receptor delta subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_C
Length = 522
Score = 83.7 bits (206), Expect = 2e-17
Identities = 48/272 (17%), Positives = 99/272 (36%), Gaps = 32/272 (11%)
Query: 2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQR--PGVETLSVGSDFIKNIWVPDTFFV 59
L +++ LK E T + + W D RL + + L + + IW+PD
Sbjct: 60 LSNLISLKETDETLTTNVWMDHAWYDHRLTWNASEYSDISILRLRPE---LIWIPDIVLQ 116
Query: 60 NEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGY 119
N +++A N + + +G +T +SCP+N+ YFP D Q C ++ + Y
Sbjct: 117 NNNDGQYNVAYFCN--VLVRPNGYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNY 174
Query: 120 TMRDIRYKWN----EGPNSVGVSNEVSLPQFKVLGHRQKDLEISLTTGNYSRLACEIQFV 175
+I +G + + F G + + + + +
Sbjct: 175 NANEISMDLMTDTIDGKDYPIEWIIIDPEAFTENGEWEIIHKPAKKNIYGDKFPNGTNYQ 234
Query: 176 ---------RSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQV 226
R +Y+I P LI ++ ++F+L + +++ + +L +
Sbjct: 235 DVTFYLIIRRKPLFYVINFITPCVLISFLAALAFYLPAE-SGEKMSTAICVLLAQAVFLL 293
Query: 227 L--------SFS---IDVYLGTCFVMVFASLL 247
L + + I YL +V ++
Sbjct: 294 LTSQRLPETALAVPLIGKYLMFIMSLVTGVVV 325
Score = 40.9 bits (95), Expect = 7e-04
Identities = 16/79 (20%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 360 YYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKIS-YV 418
+Y+I P LI ++ ++F+L + +++ + +L + T+ LP+ + V
Sbjct: 248 FYVINFITPCVLISFLAALAFYLPAE-SGEKMSTAICVLLAQAVFLLLTSQRLPETALAV 306
Query: 419 KSIDVYLGTCFVMVFASLL 437
I YL +V ++
Sbjct: 307 PLIGKYLMFIMSLVTGVVV 325
Score = 39.4 bits (91), Expect = 0.002
Identities = 15/79 (18%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 265 YYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMTTLMSSTNAALPKVS-YI 323
+Y+I P +LI ++ ++F+L + +++ + +L + T+ LP+ + +
Sbjct: 248 FYVINFITPCVLISFLAALAFYL-PAESGEKMSTAICVLLAQAVFLLLTSQRLPETALAV 306
Query: 324 KSIDVYLGTCFVMVFACLL 342
I YL +V ++
Sbjct: 307 PLIGKYLMFIMSLVTGVVV 325
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third
transmembrane domain, membrane protein; NMR {Homo
sapiens} SCOP: j.35.1.1
Length = 76
Score = 75.7 bits (186), Expect = 2e-17
Identities = 30/50 (60%), Positives = 41/50 (82%)
Query: 388 PARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLL 437
PARV LG+TTVLT+TT S + A+LPK+SYVK+ID++L C + VF++LL
Sbjct: 2 PARVGLGITTVLTLTTQSSGSRASLPKVSYVKAIDIWLAVCLLFVFSALL 51
Score = 71.4 bits (175), Expect = 6e-16
Identities = 29/49 (59%), Positives = 39/49 (79%)
Query: 294 ARVNLGVTTVLTMTTLMSSTNAALPKVSYIKSIDVYLGTCFVMVFACLL 342
ARV LG+TTVLT+TT S + A+LPKVSY+K+ID++L C + VF+ LL
Sbjct: 3 ARVGLGITTVLTLTTQSSGSRASLPKVSYVKAIDIWLAVCLLFVFSALL 51
Score = 51.8 bits (124), Expect = 6e-09
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 10/50 (20%)
Query: 208 PARVALGVTTVLTMTTLQVLS----------FSIDVYLGTCFVMVFASLL 247
PARV LG+TTVLT+TT S +ID++L C + VF++LL
Sbjct: 2 PARVGLGITTVLTLTTQSSGSRASLPKVSYVKAIDIWLAVCLLFVFSALL 51
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine
receptor, glycosylated protein, beta sandwich, Cys-loop,
buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus
musculus} PDB: 1l4w_B 1ljz_B
Length = 212
Score = 74.0 bits (182), Expect = 2e-15
Identities = 26/128 (20%), Positives = 53/128 (41%), Gaps = 7/128 (5%)
Query: 2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQR--PGVETLSVGSDFIKNIWVPDTFFV 59
L ++ + ++ T + +Q W D L + GV+ + + S+ IW PD
Sbjct: 38 LIQLINVDEVNQIVTTNVRLKQQWVDYNLKWNPDDYGGVKKIHIPSE---KIWRPDVVLY 94
Query: 60 NEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGY 119
N F I + + + ++G IT + + C + + +FP D Q C +++ + Y
Sbjct: 95 NNADGDFAIVKFTK--VLLDYTGHITWTPPAIFKSYCEIIVTHFPFDEQNCSMKLGTRTY 152
Query: 120 TMRDIRYK 127
+
Sbjct: 153 DGSAVAIN 160
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine,
glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP:
b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A*
3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A*
Length = 211
Score = 67.6 bits (165), Expect = 3e-13
Identities = 23/131 (17%), Positives = 48/131 (36%), Gaps = 7/131 (5%)
Query: 2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIKNIWVPDTFFVNE 61
++L++ + + + F+ + W+D LA+ + +SV ++WVPD N
Sbjct: 36 FINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPDQVSVPIS---SLWVPDLAAYNA 92
Query: 62 KQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTM 121
+ R+ G + + SC ++ C I+I S+ +
Sbjct: 93 ISKPEVLTPQL---ARVVSDGEVLYMPSIRQRFSCDVSGVDTE-SGATCRIKIGSWTHHS 148
Query: 122 RDIRYKWNEGP 132
R+I
Sbjct: 149 REISVDPTTEN 159
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7,
acetylcholine-binding protein; nicotinic receptor; HET:
EPJ NAG; 2.80A {Homo sapiens} PDB: 3sq9_A*
Length = 204
Score = 65.6 bits (160), Expect = 1e-12
Identities = 24/132 (18%), Positives = 53/132 (40%), Gaps = 9/132 (6%)
Query: 2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAF--RQRPGVETLSVGSDFIKNIWVPDTFFV 59
L ++ + +++ + F+ + WTD L + + PGV+ +SV ++WVPD
Sbjct: 35 LLQIMDVDEKNQVVDVVFWLQMSWTDHYLQWNVSEYPGVKQVSVPIS---SLWVPDLAAY 91
Query: 60 NEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGY 119
N + ++ SG + + SC ++ C ++ S+ +
Sbjct: 92 NAISKPEVLTPQL---ALVNSSGHVQYLPSIRQRFSCDVSGVDTE-SGATCKLKFGSWTH 147
Query: 120 TMRDIRYKWNEG 131
R++ + E
Sbjct: 148 HSRELDLQMQEA 159
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding
protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia
californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A*
2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A*
2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A*
2xnt_A* 2xnu_A* ...
Length = 228
Score = 62.1 bits (151), Expect = 3e-11
Identities = 21/128 (16%), Positives = 46/128 (35%), Gaps = 9/128 (7%)
Query: 2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAF--RQRPGVETLSVGSDFIKNIWVPDTFFV 59
L+ ++K + + L +Y +Q W L + + + + +IW PD
Sbjct: 46 LQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAA---DIWTPDITAY 102
Query: 60 NEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGY 119
+ + S + + H GS+ ++ C + C ++ S+ Y
Sbjct: 103 SSTRPVQ---VLSPQIAVVTHDGSVMFIPAQRLSFMCDPTG-VDSEEGATCAVKFGSWVY 158
Query: 120 TMRDIRYK 127
+ +I K
Sbjct: 159 SGFEIDLK 166
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION
chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta}
PDB: 4afg_A*
Length = 230
Score = 58.0 bits (140), Expect = 8e-10
Identities = 20/150 (13%), Positives = 48/150 (32%), Gaps = 14/150 (9%)
Query: 7 KLKFRSEDFTLDFYFRQFWTDPRLAFRQR--PGVETLSVGSDFIKNIWVPDTFFVNEKQS 64
+ + T + W D L + + + + D IW PD N
Sbjct: 51 RGMGFNSIGTFKAIVKLSWVDTILRWDPEPPFDFQKIEISPD---EIWTPDIKLFNSVDL 107
Query: 65 YFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDI 124
+ T+ + +G++ + C D CH + S+ Y++ ++
Sbjct: 108 DMTLDRTTQ--AIVFSNGTVLWIPPAVLKVLC-----VSQDDVDSCHFQFGSWVYSVDEV 160
Query: 125 RYKWNEGPNSVGVSNEVSLPQFKVLGHRQK 154
+ + + V + ++L + +
Sbjct: 161 DIHFMD--DKAEVLLDFYQDSLEILENSAQ 188
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein,
glycprotein, IGG fold, immunoglobulin domain, pentamer,
signal; HET: CXS; 2.0A {Bulinus truncatus}
Length = 203
Score = 57.1 bits (138), Expect = 1e-09
Identities = 18/131 (13%), Positives = 47/131 (35%), Gaps = 10/131 (7%)
Query: 2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQR-PGVETLSVGSDFIKNIWVPDTFFVN 60
L ++++ + + + + W P + ++ +S+ +W PD F N
Sbjct: 33 LMNIVEADTEKDQVEVVLWTQASWKVPYYSSLLSSSSLDQVSLPVS---KMWTPDLSFYN 89
Query: 61 EKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPM-NLQYFPMDRQLCHIEIESFGY 119
+ ++ + + GS+ + +C + N+ P C I++ S+ +
Sbjct: 90 AIAAPELLSADR---VVVSKDGSVIYVPSQRVRFTCDLINVDTEP--GATCRIKVGSWTH 144
Query: 120 TMRDIRYKWNE 130
+ E
Sbjct: 145 DNKQFALITGE 155
>1mot_A Glycine receptor alpha-1 chain; second transmembrane domain,
micelles, membrane protein; NMR {Homo sapiens} SCOP:
j.35.1.1
Length = 28
Score = 48.1 bits (114), Expect = 3e-08
Identities = 19/28 (67%), Positives = 22/28 (78%)
Query: 387 TPARVALGVTTVLTMTTLMSSTNAALPK 414
PARV LG+TTVLTMTT S + A+LPK
Sbjct: 1 APARVGLGITTVLTMTTQSSGSRASLPK 28
Score = 43.1 bits (101), Expect = 2e-06
Identities = 18/26 (69%), Positives = 21/26 (80%)
Query: 294 ARVNLGVTTVLTMTTLMSSTNAALPK 319
ARV LG+TTVLTMTT S + A+LPK
Sbjct: 3 ARVGLGITTVLTMTTQSSGSRASLPK 28
Score = 36.6 bits (84), Expect = 5e-04
Identities = 14/18 (77%), Positives = 15/18 (83%)
Query: 207 TPARVALGVTTVLTMTTL 224
PARV LG+TTVLTMTT
Sbjct: 1 APARVGLGITTVLTMTTQ 18
>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR
{Torpedo marmorata} PDB: 2lkh_A
Length = 140
Score = 44.5 bits (105), Expect = 7e-06
Identities = 12/79 (15%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Query: 360 YYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKIS-YV 418
Y+++ + P ++ + F+L ++ ++ + + ++T + +P S V
Sbjct: 51 YFVVNVIEPCKKFSELTGLVFYLPTDS-GEKMTESKSVLKSLTEKLKKIVELIPSTSSAV 109
Query: 419 KSIDVYLGTCFVMVFASLL 437
I Y+ V +S+
Sbjct: 110 PLIGKYMLFTKEFVESSIK 128
Score = 40.6 bits (95), Expect = 2e-04
Identities = 10/79 (12%), Positives = 31/79 (39%), Gaps = 2/79 (2%)
Query: 265 YYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMTTLMSSTNAALPKVS-YI 323
Y+++ + P ++ + F+L + ++ + + ++T + +P S +
Sbjct: 51 YFVVNVIEPCKKFSELTGLVFYLP-TDSGEKMTESKSVLKSLTEKLKKIVELIPSTSSAV 109
Query: 324 KSIDVYLGTCFVMVFACLL 342
I Y+ V + +
Sbjct: 110 PLIGKYMLFTKEFVESSIK 128
Score = 36.8 bits (85), Expect = 0.004
Identities = 9/79 (11%), Positives = 28/79 (35%), Gaps = 12/79 (15%)
Query: 180 YYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVLSFS--------- 230
Y+++ + P ++ + F+L ++ ++ + + ++T
Sbjct: 51 YFVVNVIEPCKKFSELTGLVFYLPTDS-GEKMTESKSVLKSLTEKLKKIVELIPSTSSAV 109
Query: 231 --IDVYLGTCFVMVFASLL 247
I Y+ V +S+
Sbjct: 110 PLIGKYMLFTKEFVESSIK 128
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic
acetylcholine receptors, transmembrane domain, HFI
junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A
Length = 164
Score = 44.8 bits (106), Expect = 8e-06
Identities = 21/101 (20%), Positives = 43/101 (42%), Gaps = 2/101 (1%)
Query: 338 FACLLGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTT 397
+ L + R +Y I + IP LI ++ + F+L + ++ L ++
Sbjct: 8 STSVDLGTENLYFQSNARRKPLFYTINLIIPCVLITSLAILVFYLPSDC-GEKMTLCISV 66
Query: 398 VLTMTTLMSSTNAALPKIS-YVKSIDVYLGTCFVMVFASLL 437
+L +T + + +P S V + YL V+V S++
Sbjct: 67 LLALTVFLLLISKIVPPTSLDVPLVGKYLMFTMVLVTFSIV 107
Score = 40.2 bits (94), Expect = 4e-04
Identities = 18/94 (19%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 250 YSRLACEIQFVRSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMTTL 309
L + R +Y I + +P +LI +++ + F+L ++ L ++ +L +T
Sbjct: 15 TENLYFQSNARRKPLFYTINLIIPCVLITSLAILVFYLP-SDCGEKMTLCISVLLALTVF 73
Query: 310 MSSTNAALPKVS-YIKSIDVYLGTCFVMVFACLL 342
+ + +P S + + YL V+V ++
Sbjct: 74 LLLISKIVPPTSLDVPLVGKYLMFTMVLVTFSIV 107
Score = 36.7 bits (85), Expect = 0.004
Identities = 19/94 (20%), Positives = 39/94 (41%), Gaps = 12/94 (12%)
Query: 165 YSRLACEIQFVRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTL 224
L + R +Y I + IP LI +++ + F+L + ++ L ++ +L +T
Sbjct: 15 TENLYFQSNARRKPLFYTINLIIPCVLITSLAILVFYLPSDC-GEKMTLCISVLLALTVF 73
Query: 225 QVLSFS-----------IDVYLGTCFVMVFASLL 247
+L + YL V+V S++
Sbjct: 74 LLLISKIVPPTSLDVPLVGKYLMFTMVLVTFSIV 107
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane
domain, transport PROT; NMR {Homo sapiens}
Length = 137
Score = 44.0 bits (104), Expect = 1e-05
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 360 YYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKIS-YV 418
+Y I + IP LI ++ + F+L ++ L ++ +L++T + +P S
Sbjct: 9 FYTINLIIPCLLISCLTVLVFYLPSEC-GEKITLCISVLLSLTVFLLLITEIIPSTSSVS 67
Query: 419 KSIDVYLGTCFVMVFASLL 437
SI YL + V S++
Sbjct: 68 PSIGEYLLFTMIFVTLSIV 86
Score = 39.8 bits (93), Expect = 3e-04
Identities = 17/79 (21%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 265 YYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMTTLMSSTNAALPKVS-YI 323
+Y I + +P +LI ++ + F+L ++ L ++ +L++T + +P S
Sbjct: 9 FYTINLIIPCLLISCLTVLVFYLP-SECGEKITLCISVLLSLTVFLLLITEIIPSTSSVS 67
Query: 324 KSIDVYLGTCFVMVFACLL 342
SI YL + V ++
Sbjct: 68 PSIGEYLLFTMIFVTLSIV 86
Score = 37.1 bits (86), Expect = 0.003
Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 12/79 (15%)
Query: 180 YYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVLSFS--------- 230
+Y I + IP LI ++ + F+L ++ L ++ +L++T +L
Sbjct: 9 FYTINLIIPCLLISCLTVLVFYLPSEC-GEKITLCISVLLSLTVFLLLITEIIPSTSSVS 67
Query: 231 --IDVYLGTCFVMVFASLL 247
I YL + V S++
Sbjct: 68 PSIGEYLLFTMIFVTLSIV 86
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.8 bits (110), Expect = 1e-05
Identities = 47/321 (14%), Positives = 85/321 (26%), Gaps = 105/321 (32%)
Query: 4 SVLKLK-FRSEDFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIKNIWVPDTFFVNEK 62
+ + L S F+ FW L++ + P+T +
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFW---------------LNLKNCNS-----PETVLEMLQ 203
Query: 63 QSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCH---I------- 112
+ + I N R HS +I I L+ + + +
Sbjct: 204 KLLYQI--DPNWTSRSDHSSNIKLRIHSIQAE-----LRRLLKSKPYENCLLVLLNVQNA 256
Query: 113 -EIESFGY------TMRDI----------RYKWNEGPNSVGVSNEVSLPQF-KVLGHRQK 154
+F T R + +S+ ++ + K L R +
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 155 DLEISLTTGNYSRLACEIQ-FVRSMGYYLIQIYIPSSLIVAIS-WVSFWLNRNA------ 206
DL R S+ I S+ ++ W W + N
Sbjct: 317 DL---------PREVLTTNPRRLSI--------IAESIRDGLATW-DNWKHVNCDKLTTI 358
Query: 207 --------TPA--R---VALGV---TTVLTMTTLQVLSFSIDVYLGTCFVMVFASLLGNY 250
PA R L V + + L ++ F + VMV + L Y
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS----DVMVVVNKLHKY 414
Query: 251 SRLACEIQFVRSMGYYLIQIY 271
S + + + + IY
Sbjct: 415 SLVEKQ---PKESTISIPSIY 432
>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1
Length = 260
Score = 45.3 bits (106), Expect = 2e-05
Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 360 YYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKIS-YV 418
+Y+I I P LI + + ++L A + L ++ +L T + +P+ S V
Sbjct: 3 FYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNV 62
Query: 419 KSIDVYLGTCFVMVFASLL 437
I YL + ++
Sbjct: 63 PLIGKYLIFVMFVSMLIVM 81
Score = 41.8 bits (97), Expect = 2e-04
Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 265 YYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMTTLMSSTNAALPKVS-YI 323
+Y+I I P +LI ++ + ++L A + L ++ +L T + +P+ S +
Sbjct: 3 FYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNV 62
Query: 324 KSIDVYLGTCFVMVFACLL 342
I YL + ++
Sbjct: 63 PLIGKYLIFVMFVSMLIVM 81
Score = 38.0 bits (87), Expect = 0.004
Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 11/79 (13%)
Query: 180 YYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVL-----------S 228
+Y+I I P LI ++ + ++L A + L ++ +L T L
Sbjct: 3 FYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNV 62
Query: 229 FSIDVYLGTCFVMVFASLL 247
I YL + ++
Sbjct: 63 PLIGKYLIFVMFVSMLIVM 81
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B
Length = 250
Score = 42.6 bits (99), Expect = 1e-04
Identities = 20/79 (25%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 360 YYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKIS-YV 418
+Y++ IP LI I++ + F+L +A +++L ++ +L +T + +P+ S V
Sbjct: 3 FYIVYTIIPCILISILAILVFYLPPDA-GEKMSLSISALLAVTVFLLLLADKVPETSLSV 61
Query: 419 KSIDVYLGTCFVMVFASLL 437
I YL ++V S++
Sbjct: 62 PIIIRYLMFIMILVAFSVI 80
Score = 39.5 bits (91), Expect = 0.001
Identities = 16/79 (20%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 265 YYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMTTLMSSTNAALPKVS-YI 323
+Y++ +P ILI ++ + F+L +++L ++ +L +T + +P+ S +
Sbjct: 3 FYIVYTIIPCILISILAILVFYLP-PDAGEKMSLSISALLAVTVFLLLLADKVPETSLSV 61
Query: 324 KSIDVYLGTCFVMVFACLL 342
I YL ++V ++
Sbjct: 62 PIIIRYLMFIMILVAFSVI 80
Score = 36.4 bits (83), Expect = 0.012
Identities = 17/79 (21%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Query: 180 YYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVL-----------S 228
+Y++ IP LI ++ + F+L +A +++L ++ +L +T +L
Sbjct: 3 FYIVYTIIPCILISILAILVFYLPPDA-GEKMSLSISALLAVTVFLLLLADKVPETSLSV 61
Query: 229 FSIDVYLGTCFVMVFASLL 247
I YL ++V S++
Sbjct: 62 PIIIRYLMFIMILVAFSVI 80
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A
1eq8_A
Length = 260
Score = 42.6 bits (99), Expect = 1e-04
Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 360 YYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKIS-YV 418
+Y+I P LI ++ ++F+L + +++ ++ +L + T+ LP+ + V
Sbjct: 3 FYVINFITPCVLISFLASLAFYLPAES-GEKMSTAISVLLAQAVFLLLTSQRLPETALAV 61
Query: 419 KSIDVYLGTCFVMVFASLL 437
I YL +V ++
Sbjct: 62 PLIGKYLMFIMSLVTGVIV 80
Score = 39.1 bits (90), Expect = 0.002
Identities = 15/79 (18%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 265 YYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMTTLMSSTNAALPKVS-YI 323
+Y+I P +LI ++ ++F+L + +++ ++ +L + T+ LP+ + +
Sbjct: 3 FYVINFITPCVLISFLASLAFYLP-AESGEKMSTAISVLLAQAVFLLLTSQRLPETALAV 61
Query: 324 KSIDVYLGTCFVMVFACLL 342
I YL +V ++
Sbjct: 62 PLIGKYLMFIMSLVTGVIV 80
Score = 35.2 bits (80), Expect = 0.029
Identities = 18/126 (14%), Positives = 45/126 (35%), Gaps = 17/126 (13%)
Query: 180 YYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVL-----------S 228
+Y+I P LI ++ ++F+L + +++ ++ +L +L
Sbjct: 3 FYVINFITPCVLISFLASLAFYLPAES-GEKMSTAISVLLAQAVFLLLTSQRLPETALAV 61
Query: 229 FSIDVYLGTCFVMVFASLLG-----NYSRLACEIQFVRSMGYYLIQIYVPSILIVAISWV 283
I YL +V ++ N+ + + + +P IL ++ +
Sbjct: 62 PLIGKYLMFIMSLVTGVIVNCGIVLNFHFRTPSTHVLSTRVKQIFLEKLPRILHMSRADE 121
Query: 284 SFWLNR 289
S +
Sbjct: 122 SEQPDW 127
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.5 bits (102), Expect = 1e-04
Identities = 46/280 (16%), Positives = 86/280 (30%), Gaps = 105/280 (37%)
Query: 105 MDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLEISLTTGN 164
D +++G+++ DI P ++ + G + K + N
Sbjct: 1649 ADNHF----KDTYGFSILDIV---INNPVNLTIHFG---------GEKGKRIRE-----N 1687
Query: 165 YSRLACEIQFVRSMGYYLIQIYIPSSLIVAISWVSFW-----LNR--NATPARVALGVTT 217
YS + E + L I + + +F L+ PA
Sbjct: 1688 YSAMIFE----TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPA-------- 1735
Query: 218 VLTMTTLQVLSFSIDVYLGTCFVM----VFA--SLLGNYSRLAC-----------EIQFV 260
+T ++ +F L + ++ FA SL G Y+ LA E+ F
Sbjct: 1736 ---LTLMEKAAFED---LKSKGLIPADATFAGHSL-GEYAALASLADVMSIESLVEVVFY 1788
Query: 261 RSMGYYLIQIYVP---------SILIVAISWVSFWLNR------VATVAR--------VN 297
R M +Q+ VP ++ + V+ ++ V V + VN
Sbjct: 1789 RGM---TMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVN 1845
Query: 298 L---GVTTVLTMTTLMSSTNAALPKVSYI------KSIDV 328
V + AL V+ + + ID+
Sbjct: 1846 YNVENQQYVA------AGDLRALDTVTNVLNFIKLQKIDI 1879
Score = 36.6 bits (84), Expect = 0.017
Identities = 89/528 (16%), Positives = 157/528 (29%), Gaps = 204/528 (38%)
Query: 31 AFRQRPGVETLSVGSDFIKNIW-VPDTFFVNEKQSYFHIATTSNEFIRIHHSGSITRSIR 89
A+ RP TLS GS ++++ VP S+F + +F +I T
Sbjct: 3 AYSTRP--LTLSHGS--LEHVLLVP-------TASFFIASQLQEQFNKILPEP--TEGFA 49
Query: 90 LTITASCPMNLQYFPMDRQLCHIEIESF-GYTMRDIRYKWNEGPNSVGVSNEV---SLPQ 145
+ P L + F GY + P+ VG ++V L +
Sbjct: 50 ADDEPTTPAEL-------------VGKFLGYVSSLVE------PSKVGQFDQVLNLCLTE 90
Query: 146 F--KVLGHRQKD---LEISLTTGNYSRLACEIQFVRSMGYYLIQIYI--------PSSL- 191
F L D L L N + L + +++ Y +I S+L
Sbjct: 91 FENCYL--EGNDIHALAAKLLQENDTTLVKTKELIKN--YITARIMAKRPFDKKSNSALF 146
Query: 192 ---------IVAISWVSF--------WLN--RN--ATPARVALGVTTVLTMTTLQVLSFS 230
+VAI F + R+ T V +G + TL L +
Sbjct: 147 RAVGEGNAQLVAI----FGGQGNTDDYFEELRDLYQTY-HVLVGDLIKFSAETLSELIRT 201
Query: 231 -----------IDV--------------YLGTCFVMVFAS--LLGNYSRLACEIQFVRSM 263
+++ YL + + S L+G LA + + +
Sbjct: 202 TLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI----SCPLIGVIQ-LAHYVVTAKLL 256
Query: 264 GYYLIQIY--------VPSILIVAI------SWVS------------FWL---------- 287
G+ ++ L+ A+ SW S F++
Sbjct: 257 GFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPN 316
Query: 288 -----NRVATVARVNLGVTT----V--LTMTTL---MSSTNAALPKVSYIKSIDVYLG-T 332
+ + N GV + + LT + ++ TN+ LP + I + G
Sbjct: 317 TSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV-EISLVNGAK 375
Query: 333 CFVMVFACLLGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATP--AR 390
V + G L + L + PSG L+++ P R
Sbjct: 376 NLV-----VSGPPQSL-------YGLNLTLRKAKAPSG-----------LDQSRIPFSER 412
Query: 391 VALGVTTVLTMTT-----LMSSTNAALPK------ISYVKS---IDVY 424
L + + L+ + + K +S+ I VY
Sbjct: 413 KLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVY 460
Score = 31.2 bits (70), Expect = 0.91
Identities = 51/309 (16%), Positives = 94/309 (30%), Gaps = 105/309 (33%)
Query: 52 WVPDTFFVNEKQSY---FHIATTSNE-FIRIHHSGSITR-SIRLTITASCPM-NLQYFPM 105
W ++FFV+ +++ F I E + SI S+ PM ++
Sbjct: 289 W--ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI----- 341
Query: 106 DRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLEISLTTGNY 165
L +++ + V +N LP K +EISL N
Sbjct: 342 -SNLTQEQVQDY-----------------VNKTNS-HLPA-------GKQVEISLV--NG 373
Query: 166 SRLACEIQFVRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPA-----------RVALG 214
++ V S G P SL ++ L + P+ R
Sbjct: 374 AK-----NLVVS-GP-------PQSLYG----LNLTLRKAKAPSGLDQSRIPFSERKLKF 416
Query: 215 VTTVLTMTTLQVLSF-SIDVYLGTCFVMVFASLLGNYSRL-ACEIQF----------VRS 262
L + + F S L ++ L+ N A +IQ +R
Sbjct: 417 SNRFLPVAS----PFHSH--LLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRV 470
Query: 263 MGYYLIQIYVPSILIVAISW-----------VSF---WLNRVATVARVNL---GVTTVLT 305
+ + + V I+ + + W + F + + + N GV ++
Sbjct: 471 LSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVA 530
Query: 306 MTTLMSSTN 314
TL + +
Sbjct: 531 -GTLDINPD 538
>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A
2k59_B
Length = 227
Score = 41.3 bits (96), Expect = 2e-04
Identities = 16/79 (20%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 360 YYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKIS-YV 418
Y+++ + IP L ++ + F+L ++ ++ L ++ +L++T + +P S V
Sbjct: 3 YFVVNVIIPCLLFSFLTGLVFYLPTDS-GEKMTLSISVLLSLTVFLLVIVELIPSTSSAV 61
Query: 419 KSIDVYLGTCFVMVFASLL 437
I Y+ + V +S++
Sbjct: 62 PLIGKYMLFTMIFVISSII 80
Score = 39.4 bits (91), Expect = 0.001
Identities = 13/79 (16%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 265 YYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMTTLMSSTNAALPKVS-YI 323
Y+++ + +P +L ++ + F+L + ++ L ++ +L++T + +P S +
Sbjct: 3 YFVVNVIIPCLLFSFLTGLVFYL-PTDSGEKMTLSISVLLSLTVFLLVIVELIPSTSSAV 61
Query: 324 KSIDVYLGTCFVMVFACLL 342
I Y+ + V + ++
Sbjct: 62 PLIGKYMLFTMIFVISSII 80
Score = 35.2 bits (80), Expect = 0.026
Identities = 13/79 (16%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Query: 180 YYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVLS----------- 228
Y+++ + IP L ++ + F+L ++ ++ L ++ +L++T ++
Sbjct: 3 YFVVNVIIPCLLFSFLTGLVFYLPTDS-GEKMTLSISVLLSLTVFLLVIVELIPSTSSAV 61
Query: 229 FSIDVYLGTCFVMVFASLL 247
I Y+ + V +S++
Sbjct: 62 PLIGKYMLFTMIFVISSII 80
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.16
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 15/39 (38%)
Query: 1 RLESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQRPGVE 39
+L++ LKL + D + P LA + +E
Sbjct: 24 KLQASLKL------YADD-------SAPALAIKAT--ME 47
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.138 0.422
Gapped
Lambda K H
0.267 0.0513 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,595,545
Number of extensions: 385623
Number of successful extensions: 984
Number of sequences better than 10.0: 1
Number of HSP's gapped: 897
Number of HSP's successfully gapped: 78
Length of query: 439
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 343
Effective length of database: 4,021,377
Effective search space: 1379332311
Effective search space used: 1379332311
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 59 (27.0 bits)