RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7487
(439 letters)
>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great
pond snail (Lymnaea stagnalis) [TaxId: 6523]}
Length = 208
Score = 80.2 bits (197), Expect = 4e-18
Identities = 30/178 (16%), Positives = 66/178 (37%), Gaps = 10/178 (5%)
Query: 1 RLESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIKNIWVPDTFFVN 60
+ ++L++ + + + F+ + W+D LA+ + +SV ++WVPD N
Sbjct: 35 KFINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPDQVSVPIS---SLWVPDLAAYN 91
Query: 61 EKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYT 120
+ + R+ G + + SC ++ C I+I S+ +
Sbjct: 92 AISKPEV---LTPQLARVVSDGEVLYMPSIRQRFSCDVSGVDTESG-ATCRIKIGSWTHH 147
Query: 121 MRDIRYKWNEGPNSVGVSNEVSLPQFKVLG--HRQKDLEISLTTGNYSRLACEIQFVR 176
R+I NS +F++L ++ + S Y + + F +
Sbjct: 148 SREISVDP-TTENSDDSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRK 204
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain
{Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Length = 260
Score = 81.0 bits (199), Expect = 5e-18
Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 360 YYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKIS-YV 418
+Y+I I P LI + + ++L A + L ++ +L T + +P+ S V
Sbjct: 3 FYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNV 62
Query: 419 KSIDVYLGTCFVMVFASLL 437
I YL + ++
Sbjct: 63 PLIGKYLIFVMFVSMLIVM 81
Score = 77.6 bits (190), Expect = 8e-17
Identities = 16/82 (19%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Query: 265 YYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMTTLMSSTNAALPKVS-YI 323
+Y+I I P +LI ++ + ++L A + L ++ +L T + +P+ S +
Sbjct: 3 FYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNV 62
Query: 324 KSIDVYLGTCFVMVFACLLGNY 345
I YL + ++
Sbjct: 63 PLIGKYLIFVMFVSMLIVMNCV 84
Score = 65.6 bits (159), Expect = 1e-12
Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 11/82 (13%)
Query: 180 YYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVLSFS--------- 230
+Y+I I P LI ++ + ++L A + L ++ +L T L
Sbjct: 3 FYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNV 62
Query: 231 --IDVYLGTCFVMVFASLLGNY 250
I YL + ++
Sbjct: 63 PLIGKYLIFVMFVSMLIVMNCV 84
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain
{Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Length = 227
Score = 75.2 bits (184), Expect = 3e-16
Identities = 16/79 (20%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 360 YYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKIS-YV 418
Y+++ + IP L ++ + F+L ++ ++ L ++ +L++T + +P S V
Sbjct: 3 YFVVNVIIPCLLFSFLTGLVFYLPTDS-GEKMTLSISVLLSLTVFLLVIVELIPSTSSAV 61
Query: 419 KSIDVYLGTCFVMVFASLL 437
I Y+ + V +S++
Sbjct: 62 PLIGKYMLFTMIFVISSII 80
Score = 73.2 bits (179), Expect = 2e-15
Identities = 13/82 (15%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 265 YYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMTTLMSSTNAALPKVS-YI 323
Y+++ + +P +L ++ + F+L + ++ L ++ +L++T + +P S +
Sbjct: 3 YFVVNVIIPCLLFSFLTGLVFYLPTDSG-EKMTLSISVLLSLTVFLLVIVELIPSTSSAV 61
Query: 324 KSIDVYLGTCFVMVFACLLGNY 345
I Y+ + V + ++
Sbjct: 62 PLIGKYMLFTMIFVISSIIITV 83
Score = 58.6 bits (141), Expect = 1e-10
Identities = 12/82 (14%), Positives = 37/82 (45%), Gaps = 12/82 (14%)
Query: 180 YYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVLSFSI-------- 231
Y+++ + IP L ++ + F+L ++ ++ L ++ +L++T ++ +
Sbjct: 3 YFVVNVIIPCLLFSFLTGLVFYLPTDS-GEKMTLSISVLLSLTVFLLVIVELIPSTSSAV 61
Query: 232 ---DVYLGTCFVMVFASLLGNY 250
Y+ + V +S++
Sbjct: 62 PLIGKYMLFTMIFVISSIIITV 83
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain
{Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Length = 250
Score = 75.6 bits (185), Expect = 4e-16
Identities = 20/79 (25%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 360 YYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKIS-YV 418
+Y++ IP LI I++ + F+L +A +++L ++ +L +T + +P+ S V
Sbjct: 3 FYIVYTIIPCILISILAILVFYLPPDA-GEKMSLSISALLAVTVFLLLLADKVPETSLSV 61
Query: 419 KSIDVYLGTCFVMVFASLL 437
I YL ++V S++
Sbjct: 62 PIIIRYLMFIMILVAFSVI 80
Score = 72.5 bits (177), Expect = 4e-15
Identities = 17/79 (21%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 265 YYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMTTLMSSTNAALPKVS-YI 323
+Y++ +P ILI ++ + F+L A +++L ++ +L +T + +P+ S +
Sbjct: 3 FYIVYTIIPCILISILAILVFYLPPDAG-EKMSLSISALLAVTVFLLLLADKVPETSLSV 61
Query: 324 KSIDVYLGTCFVMVFACLL 342
I YL ++V ++
Sbjct: 62 PIIIRYLMFIMILVAFSVI 80
Score = 61.7 bits (149), Expect = 2e-11
Identities = 16/115 (13%), Positives = 47/115 (40%), Gaps = 17/115 (14%)
Query: 180 YYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVLS----------- 228
+Y++ IP LI ++ + F+L +A +++L ++ +L +T +L
Sbjct: 3 FYIVYTIIPCILISILAILVFYLPPDA-GEKMSLSISALLAVTVFLLLLADKVPETSLSV 61
Query: 229 -----FSIDVYLGTCFVMVFASLLGNYSRLACEIQFVRSMGYYLIQIYVPSILIV 278
+ + + + F ++ + ++ N + + + + +P L +
Sbjct: 62 PIIIRYLMFIMILVAFSVILSVVVLNLHHRSPNTHTMPNWIRQIFIETLPPFLWI 116
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain
{Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Length = 260
Score = 74.8 bits (183), Expect = 9e-16
Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 360 YYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKIS-YV 418
+Y+I P LI ++ ++F+L + +++ ++ +L + T+ LP+ + V
Sbjct: 3 FYVINFITPCVLISFLASLAFYLPAES-GEKMSTAISVLLAQAVFLLLTSQRLPETALAV 61
Query: 419 KSIDVYLGTCFVMVFASLL 437
I YL +V ++
Sbjct: 62 PLIGKYLMFIMSLVTGVIV 80
Score = 72.1 bits (176), Expect = 7e-15
Identities = 15/79 (18%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 265 YYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMTTLMSSTNAALPKVS-YI 323
+Y+I P +LI ++ ++F+L + +++ ++ +L + T+ LP+ + +
Sbjct: 3 FYVINFITPCVLISFLASLAFYLPAESG-EKMSTAISVLLAQAVFLLLTSQRLPETALAV 61
Query: 324 KSIDVYLGTCFVMVFACLL 342
I YL +V ++
Sbjct: 62 PLIGKYLMFIMSLVTGVIV 80
Score = 61.0 bits (147), Expect = 4e-11
Identities = 17/115 (14%), Positives = 42/115 (36%), Gaps = 17/115 (14%)
Query: 180 YYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVLSFS--------- 230
+Y+I P LI ++ ++F+L + +++ ++ +L +L+
Sbjct: 3 FYVINFITPCVLISFLASLAFYLPAES-GEKMSTAISVLLAQAVFLLLTSQRLPETALAV 61
Query: 231 --IDVYLGTCFVMVFASLL-----GNYSRLACEIQFVRSMGYYLIQIYVPSILIV 278
I YL +V ++ N+ + + + +P IL +
Sbjct: 62 PLIGKYLMFIMSLVTGVIVNCGIVLNFHFRTPSTHVLSTRVKQIFLEKLPRILHM 116
>d1ig8a1 c.55.1.3 (A:18-224) Hexokinase {Baker's yeast
(Saccharomyces cerevisiae), pII [TaxId: 4932]}
Length = 207
Score = 27.5 bits (61), Expect = 2.7
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 67 HIATTSNEFIRIHHSGSITRSIRLTITASCPMN 99
IA + FI I+ I L T S P +
Sbjct: 113 FIADSLKAFIDEQFPQGISEPIPLGFTFSFPAS 145
>d1wl7a1 b.67.2.1 (A:2-313) Arabinanase-TS {Bacillus
thermodenitrificans [TaxId: 33940]}
Length = 312
Score = 26.8 bits (58), Expect = 5.0
Identities = 24/160 (15%), Positives = 41/160 (25%), Gaps = 2/160 (1%)
Query: 25 WTDPRLAFRQRPGVETLSVGSDFIKNIWVPDTFFVNEKQS-YFHIATTSNEFIRIHHSGS 83
W + F P V ++W PD F N Y+ ++T I + +
Sbjct: 56 WENMGRVFPSLPDWCKQYVPEKDEDHLWAPDICFYNGIYYLYYSVSTFGKNTSVIGLATN 115
Query: 84 ITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSL 143
T R M + + + + S ++
Sbjct: 116 RTLDPRDPDYEWKDMGPVIHSTASDNYNAIDPNVVFDQEGQPWLSFGSFWSGIQLIQLDT 175
Query: 144 PQFKVLGHRQKDLEISLTTGNYSRLACEIQFVRSMGYYLI 183
K + S + A I R+ YYL
Sbjct: 176 ETMKPAAQAELLTIASRGEEPNAIEAPFI-VCRNGYYYLF 214
>d1tu9a_ a.1.1.2 (A:) Hypothetical protein PA3967 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 131
Score = 26.1 bits (57), Expect = 5.0
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 10 FRSEDFTLDFYFRQFWTDPRL 30
S F DFY + P++
Sbjct: 14 CASTGFFDDFYRHFLASSPQI 34
>d1gska2 b.6.1.3 (A:183-356) Spore coat protein A, CotA {Bacillus
subtilis [TaxId: 1423]}
Length = 174
Score = 25.9 bits (56), Expect = 7.2
Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 3/78 (3%)
Query: 22 RQFWTDPRLAFRQRPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIH-H 80
R D L + P + S+ + I + +T VN K + R
Sbjct: 16 RTINEDGSLFYPSAPENPSPSLPNPSIVPAFCGETILVNGKVWPYL--EVEPRKYRFRVI 73
Query: 81 SGSITRSIRLTITASCPM 98
+ S TR+ L++
Sbjct: 74 NASNTRTYNLSLDNGGDF 91
>d1dlca1 b.18.1.3 (A:500-644) delta-Endotoxin, C-terminal domain
{Bacillus thuringiensis tenebrionis, CRYIIIA (BT13)
[TaxId: 1444]}
Length = 145
Score = 25.5 bits (56), Expect = 9.1
Identities = 16/90 (17%), Positives = 27/90 (30%), Gaps = 15/90 (16%)
Query: 56 TFFVNEKQSY---FHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHI 112
T V+ Q Y H A+TS + G+ T + L Y
Sbjct: 53 TPDVSYSQKYRARIHYASTSQITFTLSLDGAPFNQYYFDKTINKGDTLTY---------- 102
Query: 113 EIESFGYTMRDIRYKWNEGPNSVGVSNEVS 142
SF ++ + +GV+ +
Sbjct: 103 --NSFNLASFSTPFELSGNNLQIGVTGLSA 130
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.328 0.138 0.422
Gapped
Lambda K H
0.267 0.0621 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,601,652
Number of extensions: 72930
Number of successful extensions: 221
Number of sequences better than 10.0: 1
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 24
Length of query: 439
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 351
Effective length of database: 1,199,356
Effective search space: 420973956
Effective search space used: 420973956
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 54 (24.8 bits)