Query psy7490
Match_columns 193
No_of_seqs 140 out of 559
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 19:41:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7490.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7490hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d74_B Translation initiation 100.0 6.2E-56 2.1E-60 357.1 8.1 139 20-164 5-143 (148)
2 1nee_A EIF-2-beta, probable tr 100.0 8.1E-56 2.8E-60 352.9 2.3 135 20-161 4-138 (138)
3 3cw2_K Translation initiation 100.0 5E-56 1.7E-60 354.5 -9.9 136 20-161 4-139 (139)
4 2e9h_A EIF-5, eukaryotic trans 100.0 1E-47 3.4E-52 311.8 13.5 119 43-161 17-141 (157)
5 2g2k_A EIF-5, eukaryotic trans 100.0 1.9E-47 6.4E-52 313.6 11.1 123 39-161 6-134 (170)
6 1k8b_A EIF-2-beta, probable tr 99.9 4.2E-23 1.4E-27 139.6 6.2 52 55-108 1-52 (52)
7 1k81_A EIF-2-beta, probable tr 99.5 4.2E-15 1.4E-19 93.2 2.3 36 126-161 1-36 (36)
8 1k81_A EIF-2-beta, probable tr 98.7 5.3E-09 1.8E-13 65.3 2.2 36 147-188 1-36 (36)
9 1nee_A EIF-2-beta, probable tr 98.4 3.7E-08 1.3E-12 78.1 1.3 37 146-188 102-138 (138)
10 2d74_B Translation initiation 98.4 5.8E-08 2E-12 77.9 0.2 40 146-191 104-143 (148)
11 3cw2_K Translation initiation 98.3 4.3E-08 1.5E-12 77.8 -1.7 37 146-188 103-139 (139)
12 2e9h_A EIF-5, eukaryotic trans 98.2 7.4E-07 2.5E-11 72.0 2.7 36 146-187 103-140 (157)
13 2g2k_A EIF-5, eukaryotic trans 98.1 1.3E-06 4.6E-11 71.4 3.1 36 146-187 96-133 (170)
14 2fiy_A Protein FDHE homolog; F 94.0 0.03 1E-06 49.2 3.2 38 124-161 181-223 (309)
15 3a43_A HYPD, hydrogenase nicke 89.7 0.059 2E-06 42.0 -0.2 38 146-183 70-117 (139)
16 2ogh_A Eukaryotic translation 88.5 1.1 3.7E-05 33.5 6.1 55 63-122 39-97 (108)
17 2jrp_A Putative cytoplasmic pr 88.5 0.22 7.6E-06 35.9 2.2 28 126-158 3-30 (81)
18 1pft_A TFIIB, PFTFIIBN; N-term 88.1 0.28 9.7E-06 31.3 2.3 35 126-162 6-40 (50)
19 4h62_V Mediator of RNA polymer 87.3 0.32 1.1E-05 28.5 1.9 20 108-127 8-27 (31)
20 1qyp_A RNA polymerase II; tran 85.1 0.59 2E-05 30.6 2.7 12 125-136 15-26 (57)
21 1dl6_A Transcription factor II 84.8 0.43 1.5E-05 31.9 1.9 29 126-156 12-40 (58)
22 1tfi_A Transcriptional elongat 84.3 0.74 2.5E-05 29.9 2.8 30 126-155 10-46 (50)
23 2pk7_A Uncharacterized protein 83.7 0.32 1.1E-05 33.8 0.9 35 122-159 5-39 (69)
24 2xzm_F EIF1; ribosome, transla 80.1 3.3 0.00011 30.6 5.4 53 63-120 32-88 (101)
25 2lo3_A SAGA-associated factor 80.0 0.49 1.7E-05 30.3 0.7 30 133-162 1-33 (44)
26 4bbr_M Transcription initiatio 78.5 0.79 2.7E-05 40.3 1.8 31 125-155 21-51 (345)
27 2jox_A Churchill protein; zinc 78.0 2 6.8E-05 32.2 3.6 59 121-181 22-92 (106)
28 2if1_A EIF1, SUI1; translation 77.9 2.6 8.7E-05 32.5 4.3 53 63-120 57-113 (126)
29 2vut_I AREA, nitrogen regulato 77.6 0.51 1.8E-05 30.0 0.2 29 127-155 3-31 (43)
30 1gnf_A Transcription factor GA 77.6 0.55 1.9E-05 30.2 0.4 30 126-155 5-34 (46)
31 2jr6_A UPF0434 protein NMA0874 76.6 0.89 3E-05 31.4 1.2 34 123-159 6-39 (68)
32 2hf1_A Tetraacyldisaccharide-1 76.3 0.32 1.1E-05 33.7 -1.1 34 123-159 6-39 (68)
33 3k1f_M Transcription initiatio 75.7 1.1 3.8E-05 37.0 1.7 31 125-155 21-51 (197)
34 1wii_A Hypothetical UPF0222 pr 74.5 1.8 6.3E-05 31.2 2.5 32 125-156 23-57 (85)
35 1d0q_A DNA primase; zinc-bindi 74.2 4.2 0.00014 29.4 4.5 63 107-185 3-70 (103)
36 1qxf_A GR2, 30S ribosomal prot 73.0 1.1 3.9E-05 31.0 1.0 30 125-156 7-36 (66)
37 2js4_A UPF0434 protein BB2007; 72.9 1.4 4.9E-05 30.5 1.5 34 123-159 6-39 (70)
38 2jny_A Uncharacterized BCR; st 71.2 0.72 2.5E-05 31.9 -0.3 37 120-159 5-41 (67)
39 3k7a_M Transcription initiatio 71.1 1.4 4.8E-05 38.5 1.4 32 125-156 21-52 (345)
40 3a43_A HYPD, hydrogenase nicke 70.8 2.4 8.3E-05 32.7 2.6 25 79-105 40-64 (139)
41 3dfx_A Trans-acting T-cell-spe 70.6 0.86 2.9E-05 31.2 -0.0 42 126-167 8-56 (63)
42 2au3_A DNA primase; zinc ribbo 70.5 3.6 0.00012 36.6 4.0 60 107-185 1-67 (407)
43 3j20_W 30S ribosomal protein S 67.4 1.9 6.4E-05 29.7 1.1 29 125-155 15-43 (63)
44 2kae_A GATA-type transcription 67.2 1.4 4.8E-05 30.8 0.5 30 125-155 8-39 (71)
45 3cc2_Z 50S ribosomal protein L 66.8 3.9 0.00013 31.2 2.9 45 107-156 43-88 (116)
46 3j20_Y 30S ribosomal protein S 66.7 3.4 0.00011 26.8 2.2 28 125-155 19-46 (50)
47 3h0g_I DNA-directed RNA polyme 66.4 3.4 0.00012 30.7 2.5 30 126-155 73-109 (113)
48 2lcq_A Putative toxin VAPC6; P 66.0 1.8 6.2E-05 33.6 0.9 41 130-182 117-157 (165)
49 3po3_S Transcription elongatio 64.9 2.3 8E-05 34.2 1.4 12 126-137 138-149 (178)
50 1d1r_A Hypothetical 11.4 KD pr 64.6 3.9 0.00013 31.0 2.6 54 62-120 46-99 (116)
51 1gh9_A 8.3 kDa protein (gene M 64.6 2.8 9.6E-05 29.2 1.6 32 126-162 5-36 (71)
52 2jne_A Hypothetical protein YF 64.5 3.9 0.00013 30.5 2.5 26 126-156 33-58 (101)
53 3u5c_b RP61, YS20, 40S ribosom 62.6 3.3 0.00011 29.9 1.7 29 125-155 34-62 (82)
54 2xzm_6 RPS27E; ribosome, trans 61.1 2.5 8.6E-05 30.4 0.8 29 125-155 32-60 (81)
55 4gat_A Nitrogen regulatory pro 60.9 1.5 5.1E-05 30.2 -0.4 30 126-155 10-39 (66)
56 2fiy_A Protein FDHE homolog; F 60.7 4 0.00014 35.6 2.2 43 146-189 182-224 (309)
57 1twf_I B12.6, DNA-directed RNA 59.6 5.5 0.00019 29.9 2.6 31 126-156 73-110 (122)
58 2kpi_A Uncharacterized protein 57.9 5 0.00017 26.5 1.9 33 122-159 7-41 (56)
59 3j21_i 50S ribosomal protein L 57.9 11 0.00038 27.0 3.8 40 111-155 22-62 (83)
60 1pqv_S STP-alpha, transcriptio 57.6 5.4 0.00018 34.6 2.5 12 103-114 217-228 (309)
61 2dkt_A Ring finger and CHY zin 56.9 3.5 0.00012 32.5 1.1 17 170-186 112-128 (143)
62 2k2d_A Ring finger and CHY zin 56.3 2.7 9.1E-05 29.7 0.3 11 146-156 37-47 (79)
63 3iz6_X 40S ribosomal protein S 56.0 3.5 0.00012 30.0 0.9 28 126-155 37-64 (86)
64 3h0g_I DNA-directed RNA polyme 56.0 5.3 0.00018 29.7 1.9 34 126-159 5-39 (113)
65 1wii_A Hypothetical UPF0222 pr 55.7 5.8 0.0002 28.5 2.0 37 146-185 23-59 (85)
66 3iz5_m 60S ribosomal protein L 55.1 13 0.00044 27.2 3.8 40 111-155 23-63 (92)
67 1vq8_Z 50S ribosomal protein L 54.9 7.2 0.00025 27.8 2.4 27 127-156 29-55 (83)
68 1v6g_A Actin binding LIM prote 52.0 26 0.00089 23.3 4.8 62 121-184 10-74 (81)
69 3j21_g 50S ribosomal protein L 51.9 5.3 0.00018 26.2 1.2 33 121-161 10-42 (51)
70 1nui_A DNA primase/helicase; z 51.8 8 0.00027 31.7 2.6 30 125-157 14-44 (255)
71 2kdx_A HYPA, hydrogenase/ureas 51.8 8.1 0.00028 28.5 2.4 59 77-156 40-100 (119)
72 4esj_A Type-2 restriction enzy 51.7 9.8 0.00034 32.6 3.1 58 107-164 15-74 (257)
73 3irb_A Uncharacterized protein 51.6 4.1 0.00014 31.4 0.7 17 140-156 41-57 (145)
74 3mhs_E SAGA-associated factor 49.9 4.7 0.00016 29.8 0.7 30 133-162 59-91 (96)
75 1twf_I B12.6, DNA-directed RNA 49.2 8.9 0.00031 28.8 2.2 34 126-159 5-39 (122)
76 3lsg_A Two-component response 48.1 16 0.00056 25.1 3.4 27 68-94 21-47 (103)
77 1w7p_D VPS36P, YLR417W; ESCRT- 47.6 3.9 0.00013 38.7 0.0 63 123-185 115-206 (566)
78 2ctt_A DNAJ homolog subfamily 46.9 17 0.00057 26.0 3.4 35 122-160 25-59 (104)
79 3mn2_A Probable ARAC family tr 45.9 16 0.00055 25.4 3.1 27 68-94 20-46 (108)
80 2k9s_A Arabinose operon regula 45.2 19 0.00064 25.1 3.4 27 68-94 22-48 (107)
81 2e2z_A TIM15; protein import, 44.4 8.5 0.00029 28.6 1.4 32 127-158 15-50 (100)
82 1twf_L ABC10-alpha, DNA-direct 42.6 7.4 0.00025 26.9 0.8 30 127-160 30-59 (70)
83 3oou_A LIN2118 protein; protei 42.6 20 0.0007 24.9 3.2 27 68-94 23-49 (108)
84 4hc9_A Trans-acting T-cell-spe 42.1 5.5 0.00019 29.9 0.1 29 126-154 6-34 (115)
85 3o9x_A Uncharacterized HTH-typ 41.5 21 0.00073 25.8 3.3 13 171-183 34-46 (133)
86 2gnr_A Conserved hypothetical 41.2 7.5 0.00026 30.1 0.7 17 140-156 41-57 (145)
87 3oio_A Transcriptional regulat 41.1 21 0.0007 25.1 3.1 27 68-94 25-51 (113)
88 1vk6_A NADH pyrophosphatase; 1 40.9 17 0.00059 30.4 3.0 40 114-156 96-135 (269)
89 1bl0_A Protein (multiple antib 40.0 25 0.00085 25.4 3.4 28 67-94 28-55 (129)
90 1u8b_A ADA polyprotein; protei 39.7 22 0.00074 25.8 3.1 28 67-94 94-121 (133)
91 4hc9_A Trans-acting T-cell-spe 38.3 6.9 0.00024 29.4 0.1 30 126-155 60-89 (115)
92 3flo_B DNA polymerase alpha ca 37.6 11 0.00039 31.0 1.3 44 145-188 21-64 (206)
93 3ga8_A HTH-type transcriptiona 37.5 30 0.001 23.5 3.3 17 167-183 30-46 (78)
94 2iyb_E Testin, TESS, TES; LIM 37.2 16 0.00055 23.4 1.8 29 127-155 4-41 (65)
95 2qkd_A Zinc finger protein ZPR 36.4 29 0.00098 31.4 3.9 32 126-157 221-260 (404)
96 3h0g_L DNA-directed RNA polyme 35.4 12 0.00039 25.6 0.8 31 127-161 23-53 (63)
97 2apo_B Ribosome biogenesis pro 35.3 18 0.00061 24.4 1.8 9 149-157 21-29 (60)
98 1ylf_A RRF2 family protein; st 34.2 47 0.0016 24.8 4.3 54 67-120 31-86 (149)
99 2l3k_A Rhombotin-2, linker, LI 34.2 25 0.00086 25.5 2.6 28 127-154 10-41 (123)
100 1q1a_A HST2 protein; ternary c 33.9 5.6 0.00019 33.8 -1.2 50 132-181 121-171 (289)
101 1x68_A FHL5 protein; four-and- 33.8 15 0.00051 24.3 1.2 54 126-183 6-66 (76)
102 2k1p_A Zinc finger RAN-binding 33.6 22 0.00076 20.7 1.8 8 176-183 23-30 (33)
103 3qt1_I DNA-directed RNA polyme 32.9 19 0.00065 27.6 1.8 35 125-159 24-59 (133)
104 1tc3_C Protein (TC3 transposas 32.9 30 0.001 19.6 2.4 21 68-88 23-43 (51)
105 1ffk_W Ribosomal protein L37AE 32.5 35 0.0012 23.8 3.0 45 107-156 10-55 (73)
106 1x3z_A Peptide: N-glycanase; h 32.4 34 0.0012 30.3 3.6 47 110-156 98-165 (335)
107 2con_A RUH-035 protein, NIN on 32.4 21 0.0007 25.3 1.8 38 133-182 2-39 (79)
108 1exk_A DNAJ protein; extended 32.0 33 0.0011 22.9 2.8 32 123-158 9-40 (79)
109 3jyw_9 60S ribosomal protein L 32.0 19 0.00064 25.2 1.5 29 123-156 25-54 (72)
110 1x4k_A Skeletal muscle LIM-pro 31.8 17 0.00058 23.5 1.2 28 126-153 6-37 (72)
111 3cng_A Nudix hydrolase; struct 30.8 21 0.00072 27.3 1.8 30 125-154 3-33 (189)
112 2rgt_A Fusion of LIM/homeobox 30.8 35 0.0012 26.0 3.1 7 127-133 35-41 (169)
113 1nj3_A NPL4; NZF domain, rubre 30.7 22 0.00075 20.1 1.4 8 176-183 23-30 (31)
114 1wyh_A SLIM 2, skeletal muscle 30.5 48 0.0016 21.2 3.3 28 126-153 6-37 (72)
115 1x0t_A Ribonuclease P protein 30.5 39 0.0013 25.2 3.2 31 127-157 67-105 (120)
116 3izc_m 60S ribosomal protein R 30.1 26 0.00089 25.6 2.0 40 111-155 23-63 (92)
117 1x63_A Skeletal muscle LIM-pro 29.9 65 0.0022 21.1 4.0 28 126-153 16-47 (82)
118 1zzo_A RV1677; thioredoxin fol 29.8 44 0.0015 22.6 3.2 27 97-123 108-135 (136)
119 1iml_A CRIP, cysteine rich int 29.7 85 0.0029 20.3 4.5 26 127-152 2-30 (76)
120 2j9u_B VPS36, vacuolar protein 29.5 9.1 0.00031 27.1 -0.5 35 147-185 18-52 (76)
121 1q14_A HST2 protein; histone d 29.2 8.8 0.0003 34.0 -0.8 51 131-181 128-179 (361)
122 3glr_A NAD-dependent deacetyla 29.2 11 0.00039 32.2 -0.0 47 132-181 124-171 (285)
123 3v2d_5 50S ribosomal protein L 28.8 16 0.00053 24.5 0.6 25 123-155 28-52 (60)
124 2jtn_A LIM domain-binding prot 28.7 25 0.00087 27.2 1.9 53 125-179 87-150 (182)
125 2zjr_Z 50S ribosomal protein L 28.7 16 0.00055 24.4 0.7 26 123-156 28-53 (60)
126 2ayj_A 50S ribosomal protein L 28.5 23 0.00079 23.7 1.4 27 143-182 16-42 (56)
127 1l8d_A DNA double-strand break 28.5 30 0.001 24.7 2.2 24 113-136 35-58 (112)
128 1zso_A Hypothetical protein; s 28.3 26 0.00089 27.9 1.9 14 146-159 70-83 (164)
129 2k5r_A Uncharacterized protein 27.9 7 0.00024 28.8 -1.4 16 122-137 5-20 (97)
130 2lk0_A RNA-binding protein 5; 27.1 25 0.00086 20.4 1.2 9 176-184 22-30 (32)
131 1nlt_A Protein YDJ1, mitochond 26.8 24 0.00082 29.3 1.5 32 123-159 36-67 (248)
132 4a17_Y RPL37A, 60S ribosomal p 26.7 25 0.00085 26.2 1.4 39 112-155 24-63 (103)
133 2in3_A Hypothetical protein; D 26.4 1.5E+02 0.005 22.4 6.1 38 88-125 169-212 (216)
134 3h99_A Methionyl-tRNA syntheta 26.3 46 0.0016 30.3 3.5 18 70-87 72-89 (560)
135 2d9g_A YY1-associated factor 2 26.1 32 0.0011 22.3 1.7 13 146-158 25-37 (53)
136 2d8x_A Protein pinch; LIM doma 26.1 38 0.0013 21.7 2.2 28 126-153 6-35 (70)
137 2xqn_T Testin, TESS; metal-bin 26.1 52 0.0018 23.5 3.2 54 124-179 29-96 (126)
138 1nd9_A Translation initiation 26.0 56 0.0019 19.4 2.8 25 68-93 4-28 (49)
139 3pwf_A Rubrerythrin; non heme 25.6 70 0.0024 25.1 4.0 24 127-156 140-163 (170)
140 3mkl_A HTH-type transcriptiona 25.4 55 0.0019 23.1 3.2 26 68-94 25-50 (120)
141 2lr8_A CAsp8-associated protei 31.3 15 0.00051 25.6 0.0 21 67-87 37-57 (70)
142 1wep_A PHF8; structural genomi 25.4 16 0.00055 25.0 0.2 56 124-185 11-66 (79)
143 1pqv_S STP-alpha, transcriptio 25.3 30 0.001 29.8 1.9 12 146-157 268-279 (309)
144 3h93_A Thiol:disulfide interch 25.3 1.3E+02 0.0046 22.3 5.6 57 67-124 109-185 (192)
145 2heo_A Z-DNA binding protein 1 25.3 98 0.0033 20.0 4.2 38 69-107 28-67 (67)
146 2k3r_A Ribonuclease P protein 24.8 60 0.0021 24.3 3.4 32 127-158 62-101 (123)
147 2k7r_A Primosomal protein DNAI 24.6 1.2E+02 0.004 21.7 4.8 60 68-143 20-92 (106)
148 3a9j_C Mitogen-activated prote 24.6 31 0.0011 19.9 1.3 10 175-184 24-33 (34)
149 2kwq_A Protein MCM10 homolog; 24.6 20 0.00067 26.2 0.5 28 146-183 48-75 (92)
150 1nyp_A Pinch protein; LIM doma 24.5 14 0.00048 23.6 -0.2 26 127-152 7-34 (66)
151 1we9_A PHD finger family prote 24.4 11 0.00037 24.6 -0.8 29 125-158 6-34 (64)
152 2lv9_A Histone-lysine N-methyl 24.4 28 0.00096 24.9 1.3 51 124-183 27-77 (98)
153 1a7i_A QCRP2 (LIM1); LIM domai 24.2 98 0.0034 20.3 4.1 29 125-153 7-38 (81)
154 2opv_A KHSRP protein; KH domai 24.0 1.5E+02 0.005 20.0 5.0 34 83-118 35-76 (85)
155 2aus_D NOP10, ribosome biogene 23.8 34 0.0012 23.0 1.6 8 149-156 20-27 (60)
156 3gj3_B Nuclear pore complex pr 23.6 33 0.0011 20.3 1.3 11 146-156 21-31 (33)
157 1lko_A Rubrerythrin all-iron(I 23.5 67 0.0023 25.4 3.6 11 112-122 133-143 (191)
158 2x48_A CAG38821; archeal virus 23.4 52 0.0018 19.9 2.4 21 68-88 33-53 (55)
159 2ggt_A SCO1 protein homolog, m 23.2 78 0.0027 22.5 3.6 29 97-125 133-163 (164)
160 1d5y_A ROB transcription facto 23.1 52 0.0018 26.4 2.9 27 68-94 21-47 (292)
161 2zkr_2 60S ribosomal protein L 22.9 25 0.00084 26.0 0.8 27 124-156 15-41 (97)
162 1k8r_B Protein kinase BYR2; si 22.7 1.3E+02 0.0046 22.2 4.7 66 21-116 19-87 (110)
163 2x5c_A Hypothetical protein OR 22.6 31 0.001 25.8 1.2 12 147-158 53-64 (131)
164 2qkd_A Zinc finger protein ZPR 22.2 39 0.0013 30.6 2.1 40 145-184 219-260 (404)
165 2egq_A FHL1 protein; LIM domai 22.2 32 0.0011 22.5 1.2 8 127-134 17-24 (77)
166 1jrm_A MTH0637, conserved hypo 22.1 1.6E+02 0.0053 21.5 5.1 41 81-122 54-99 (104)
167 1ma3_A SIR2-AF2, transcription 21.8 14 0.00049 30.6 -0.8 42 137-181 114-155 (253)
168 3lor_A Thiol-disulfide isomera 21.4 88 0.003 22.1 3.6 28 97-124 127-156 (160)
169 3nsj_A Perforin-1; pore formin 21.2 58 0.002 30.1 3.1 22 111-132 336-357 (540)
170 1k3e_A CEST; chaperone, secret 21.2 1.6E+02 0.0056 23.1 5.3 99 24-125 6-120 (156)
171 3lwf_A LIN1550 protein, putati 20.7 2E+02 0.0069 21.9 5.8 67 67-134 45-114 (159)
172 1x62_A C-terminal LIM domain p 20.2 66 0.0023 21.2 2.5 28 125-152 15-44 (79)
173 2pij_A Prophage PFL 6 CRO; tra 20.1 1.3E+02 0.0045 18.5 3.9 23 68-90 15-37 (67)
174 1g47_A Pinch protein; LIM doma 20.0 1.2E+02 0.004 19.5 3.8 28 126-153 12-43 (77)
No 1
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=100.00 E-value=6.2e-56 Score=357.12 Aligned_cols=139 Identities=39% Similarity=0.762 Sum_probs=129.3
Q ss_pred CccHHHHHHHHHHHHHhcCCCcccCcceeeecCCCeEEEecCeeeEEeccHHHHHHcCCChHHHHHHHHHhhcCceeecC
Q psy7490 20 DYTYEELLSRVFEIMREKNPDMVAGKKQKFVMRPPQVVRIGTKKTSFANFTEICKTLHRLPKHLLDFLLAELGTSGSVDG 99 (193)
Q Consensus 20 ~~~Y~~LL~R~~~~L~~~~p~~~~~~~~R~~mP~p~v~~~Gg~KTvi~Nf~dIak~L~R~p~hv~ky~~~ELgt~g~id~ 99 (193)
.|+|++||+|||+.| |+...++.+||+||+|++.++| +||+|+||.|||++|||+|+||+|||++||||+|++|
T Consensus 5 ~~~Y~~LL~R~~~~l----p~~~~~~~~RykmP~~~v~~eG-kKTvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id- 78 (148)
T 2d74_B 5 YYDYEKLLEKAYQEL----PENVKHHKSRFEVPGALVTIEG-NKTIIENFKDIADALNRDPQHLLKFLLREIATAGTLE- 78 (148)
T ss_dssp TTCHHHHHHTTTSSS----CHHHHSSSCCCCCCCCCEEEET-TEEEESCHHHHHHHHTCCSHHHHHHHHHHSCCCEEEE-
T ss_pred cccHHHHHHHHHHHC----ccccCCCCCceecCCCeEEEec-CeEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeec-
Confidence 478999999999998 8875246789999999999997 6999999999999999999999999999999999999
Q ss_pred CCeEEEEeeccHHHHHHHHHHHhhhccccCCCCCCcceeEecCceeecccccccccccccccccc
Q psy7490 100 NSQLIIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLFFLQCETCGSRCSVASIKSG 164 (193)
Q Consensus 100 ~~~lii~G~~~~~~iq~~L~~yI~~YVlC~~C~sPdT~L~k~~rl~~l~C~aCGa~~~V~~~k~~ 164 (193)
+|+|||||+|++++||++|++||++||+|++|+||||.|++++|+++++|+|||+.+||+++|..
T Consensus 79 ~~rlii~G~~~~~~i~~~L~~yI~~yVlC~~C~sPdT~L~k~~r~~~l~C~ACGa~~~V~~~k~~ 143 (148)
T 2d74_B 79 GRRVVLQGRFTPYLIANKLKKYIKEYVICPVCGSPDTKIIKRDRFHFLKCEACGAETPIQHLLEH 143 (148)
T ss_dssp TTEEEESSCCCHHHHHHHHHHHHHHHSSCSSSCCTTCCCCBSSSSBCCCCSSSCCCCCCCC----
T ss_pred CCEEEEEeeeCHHHHHHHHHHHHHHEEECCCCCCcCcEEEEeCCEEEEEecCCCCCccccchhhc
Confidence 99999999999999999999999999999999999999999999999999999999999998753
No 2
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=100.00 E-value=8.1e-56 Score=352.90 Aligned_cols=135 Identities=34% Similarity=0.716 Sum_probs=128.1
Q ss_pred CccHHHHHHHHHHHHHhcCCCcccCcceeeecCCCeEEEecCeeeEEeccHHHHHHcCCChHHHHHHHHHhhcCceeecC
Q psy7490 20 DYTYEELLSRVFEIMREKNPDMVAGKKQKFVMRPPQVVRIGTKKTSFANFTEICKTLHRLPKHLLDFLLAELGTSGSVDG 99 (193)
Q Consensus 20 ~~~Y~~LL~R~~~~L~~~~p~~~~~~~~R~~mP~p~v~~~Gg~KTvi~Nf~dIak~L~R~p~hv~ky~~~ELgt~g~id~ 99 (193)
.|+|++||+|||+.| |+.. ++.+||+||+|++.++|. ||+|+||.|||++|||+|+||+|||++||||+|++|
T Consensus 4 ~~~Y~~lL~R~~~~l----~~~~-~~~~R~~mp~~~v~~eG~-kTvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id- 76 (138)
T 1nee_A 4 MDDYEKLLERAIDQL----PPEV-FETKRFEVPKAYSVIQGN-RTFIQNFREVADALNRDPQHLLKFLLRELGTAGNLE- 76 (138)
T ss_dssp CCSSCCCCCSSSSSS----CTTS-CCCCCCCCSCCCCCEETT-EEEESCHHHHHHHHCSSHHHHHHHHHHHCCSCCCCB-
T ss_pred ccCHHHHHHHHHHHc----cccc-CCccceecCCCeEEEECC-cEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeec-
Confidence 578999999999998 6654 356899999999999976 799999999999999999999999999999999999
Q ss_pred CCeEEEEeeccHHHHHHHHHHHhhhccccCCCCCCcceeEecCceeeccccccccccccccc
Q psy7490 100 NSQLIIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLFFLQCETCGSRCSVASI 161 (193)
Q Consensus 100 ~~~lii~G~~~~~~iq~~L~~yI~~YVlC~~C~sPdT~L~k~~rl~~l~C~aCGa~~~V~~~ 161 (193)
++++||||+|++++||++|++||++||+|++|+||||.|++++|+++++|+|||+.+||++|
T Consensus 77 ~~rlii~G~~~~~~i~~~L~~yI~~yVlC~~C~sPdT~l~k~~r~~~l~C~ACGa~~~V~~i 138 (138)
T 1nee_A 77 GGRAILQGKFTHFLINERIEDYVNKFVICHECNRPDTRIIREGRISLLKCEACGAKAPLKNV 138 (138)
T ss_dssp TTTEEEESSCSSSHHHHHHHHHHTHHHHHTCCSSCSSCCEEETTTTEEECSTTSCCCCSCCC
T ss_pred CCEEEEEeeeCHHHHHHHHHHHHhhEEECCCCCCcCcEEEEcCCeEEEEccCCCCCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999875
No 3
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=100.00 E-value=5e-56 Score=354.50 Aligned_cols=136 Identities=32% Similarity=0.702 Sum_probs=120.0
Q ss_pred CccHHHHHHHHHHHHHhcCCCcccCcceeeecCCCeEEEecCeeeEEeccHHHHHHcCCChHHHHHHHHHhhcCceeecC
Q psy7490 20 DYTYEELLSRVFEIMREKNPDMVAGKKQKFVMRPPQVVRIGTKKTSFANFTEICKTLHRLPKHLLDFLLAELGTSGSVDG 99 (193)
Q Consensus 20 ~~~Y~~LL~R~~~~L~~~~p~~~~~~~~R~~mP~p~v~~~Gg~KTvi~Nf~dIak~L~R~p~hv~ky~~~ELgt~g~id~ 99 (193)
.|+|++||+|||+.| |+.. ++.+||+||+|++.++|. ||+|+||.|||++|||+|+||+|||++||||+|++|+
T Consensus 4 ~~~Y~~lL~R~~~~l----~~~~-~~~~R~kmp~~~v~~eG~-kTvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id~ 77 (139)
T 3cw2_K 4 EKEYVEMLDRLYSKL----PEKG-RKEGTQSLPNMIILNIGN-TTIIRNFAEYCDRIRREDKICMKYLLKELAAPGNVDD 77 (139)
T ss_dssp SGGGHHHHTTTTTSS----TTSS-SCSSCCSCCCCCCCCCSS-SCCCSCSSSTTTTTSSCCTTTHHHHSCCSSCCCCCSS
T ss_pred ccCHHHHHHHHHHHc----cccc-CCccceecCCCeEEEECC-eEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceEECC
Confidence 578999999999998 6654 467899999999999876 7999999999999999999999999999999999999
Q ss_pred CCeEEEEeeccHHHHHHHHHHHhhhccccCCCCCCcceeEecCceeeccccccccccccccc
Q psy7490 100 NSQLIIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLFFLQCETCGSRCSVASI 161 (193)
Q Consensus 100 ~~~lii~G~~~~~~iq~~L~~yI~~YVlC~~C~sPdT~L~k~~rl~~l~C~aCGa~~~V~~~ 161 (193)
+|++||||+|++++||++|++||++||+|++|+||||.|++++|+++++|+|||+.+||+++
T Consensus 78 ~~rlii~G~~~~~~i~~~L~~yI~~yVlC~~C~sPdT~l~k~~r~~~l~C~ACGa~~~V~~i 139 (139)
T 3cw2_K 78 KGELVIQGKFSSQVINTLMERFLKAYVECSTCKSLDTILKKEKKSWYIVCLACGAQTPVKPL 139 (139)
T ss_dssp SCCCTTTCSCCSCCSCSTTTTTSSCCSSCCSSSSSCCCSCSSCSTTTSSCCC----------
T ss_pred CCeEEEEeeeCHHHHHHHHHHHHHHeeECCCCCCcCcEEEEeCCeEEEEecCCCCCCccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999875
No 4
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=1e-47 Score=311.83 Aligned_cols=119 Identities=24% Similarity=0.475 Sum_probs=113.6
Q ss_pred cCcceeeecCCCeEEEecC---eeeEEeccHHHHHHcCCChHHHHHHHHHhhcCceeec-CCCeEEEEeeccHHHHHHHH
Q psy7490 43 AGKKQKFVMRPPQVVRIGT---KKTSFANFTEICKTLHRLPKHLLDFLLAELGTSGSVD-GNSQLIIKGRFQQKQIENVL 118 (193)
Q Consensus 43 ~~~~~R~~mP~p~v~~~Gg---~KTvi~Nf~dIak~L~R~p~hv~ky~~~ELgt~g~id-~~~~lii~G~~~~~~iq~~L 118 (193)
.++.+||+||+|++.++|. +||+|+||.|||++|||+|+||+|||++||||+|++| ++++|||||+|++++||++|
T Consensus 17 ~d~~~RykmP~~~v~~eG~gnG~KTvi~Nf~dIak~L~R~p~hv~ky~~~ELGt~g~id~~~~rlii~G~~~~~~i~~~L 96 (157)
T 2e9h_A 17 SDQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVKNDRYIVNGSHEANKLQDML 96 (157)
T ss_dssp CCSCCCCEEECCCEEECSSSSSCEEEETTHHHHHHHTTSCTHHHHHHHHHHHTCCEEEETTTTEEEEEBCCCHHHHHHHH
T ss_pred CCcccceecCCCeEEEeccCCccEEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeecCCCCEEEEEeeeCHHHHHHHH
Confidence 3567899999999999984 8999999999999999999999999999999999999 59999999999999999999
Q ss_pred HHHhhhccccCCCCCCcceeEe--cCceeeccccccccccccccc
Q psy7490 119 RRYIKEYVTCHTCRSPDTILQK--DTRLFFLQCETCGSRCSVASI 161 (193)
Q Consensus 119 ~~yI~~YVlC~~C~sPdT~L~k--~~rl~~l~C~aCGa~~~V~~~ 161 (193)
++||++||+|++|+||||.|++ ++|+++++|+|||+.++|++.
T Consensus 97 ~~yI~~YVlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa~~~V~~~ 141 (157)
T 2e9h_A 97 DGFIKKFVLCPECENPETDLHVNPKKQTIGNSCKACGYRGMLDTH 141 (157)
T ss_dssp HHHHHHTTSCTTTCCSCCEEEEETTTTEEEEECSSSCCEEECCCC
T ss_pred HHHHHHeEECCCCCCCccEEEEecCCCEEEEEccCCCCCCcccch
Confidence 9999999999999999999998 789999999999999999874
No 5
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=100.00 E-value=1.9e-47 Score=313.58 Aligned_cols=123 Identities=24% Similarity=0.448 Sum_probs=116.3
Q ss_pred CCcccCcceeeecCCCeEEEec---CeeeEEeccHHHHHHcCCChHHHHHHHHHhhcCceeecC-CCeEEEEeeccHHHH
Q psy7490 39 PDMVAGKKQKFVMRPPQVVRIG---TKKTSFANFTEICKTLHRLPKHLLDFLLAELGTSGSVDG-NSQLIIKGRFQQKQI 114 (193)
Q Consensus 39 p~~~~~~~~R~~mP~p~v~~~G---g~KTvi~Nf~dIak~L~R~p~hv~ky~~~ELgt~g~id~-~~~lii~G~~~~~~i 114 (193)
+..+++..+||+||+|++.++| |+||+|+||.|||++|+|+|+||+|||++||||+|++|+ +++|||+|+|++++|
T Consensus 6 ~~~~~D~~~RykmP~~~v~~EG~gnG~KTvi~Nf~dIak~L~R~p~hv~kyf~~ELGt~g~id~~~~rliinG~~~~~~i 85 (170)
T 2g2k_A 6 NRSVMDQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVKNDRYIVNGSHEANKL 85 (170)
T ss_dssp CSSCCSCCSSCCCCCCCCEEESCTTTCEEECSSHHHHHHHHSSCCTTTHHHHHHHTTCCCEECTTTCCEEEEBCCCHHHH
T ss_pred cCCCCCccccccCCCCeEEEeccCCccEEEEEcHHHHHHHhCCCHHHHHHHHHHHhCCceeecCCCCEEEEEeeeCHHHH
Confidence 3334577899999999999998 489999999999999999999999999999999999997 899999999999999
Q ss_pred HHHHHHHhhhccccCCCCCCcceeEe--cCceeeccccccccccccccc
Q psy7490 115 ENVLRRYIKEYVTCHTCRSPDTILQK--DTRLFFLQCETCGSRCSVASI 161 (193)
Q Consensus 115 q~~L~~yI~~YVlC~~C~sPdT~L~k--~~rl~~l~C~aCGa~~~V~~~ 161 (193)
|++|++||++||+|++|+||||.|++ ++++++++|.|||+.+||++.
T Consensus 86 ~~~L~~yI~~YVlC~~C~sPdT~L~k~~~~r~~~l~C~ACGa~~~V~~~ 134 (170)
T 2g2k_A 86 QDMLDGFIKKFVLCPECENPETDLHVNPKKQTIGNSCKACGYRGMLDTH 134 (170)
T ss_dssp HHHHHHHHHHHHSCTTTSSSCEEEEEETTTTEEEEEETTTCCCCCSCSS
T ss_pred HHHHHHHHHHeEECCCCCCCccEEEEecCCCEEEEEccccCCccccccc
Confidence 99999999999999999999999999 899999999999999999865
No 6
>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta subunit; N-terminal domain, AIF2 subunit beta; NMR {Methanocaldococcus jannaschii} SCOP: d.241.1.1
Probab=99.88 E-value=4.2e-23 Score=139.63 Aligned_cols=52 Identities=29% Similarity=0.602 Sum_probs=48.9
Q ss_pred eEEEecCeeeEEeccHHHHHHcCCChHHHHHHHHHhhcCceeecCCCeEEEEee
Q psy7490 55 QVVRIGTKKTSFANFTEICKTLHRLPKHLLDFLLAELGTSGSVDGNSQLIIKGR 108 (193)
Q Consensus 55 ~v~~~Gg~KTvi~Nf~dIak~L~R~p~hv~ky~~~ELgt~g~id~~~~lii~G~ 108 (193)
+|.++|+ ||+|+||.|||++|||+|+||+|||++||||+|++| +++|+|+|+
T Consensus 1 ~v~~eG~-kTvi~Nf~~Ia~~L~R~p~hv~ky~~~ELGt~g~id-~~rlii~G~ 52 (52)
T 1k8b_A 1 EILIEGN-RTIIRNFRELAKAVNRDEEFFAKYLLKETGSAGNLE-GGRLILQRR 52 (52)
T ss_dssp CEEEETT-EEEECCHHHHHHHHHTCHHHHHHHHHHHHSSEEEEE-TTEEEEECC
T ss_pred CcEEEcC-eEEEECHHHHHHHHCCCHHHHHHHHHHHhCCCeeec-CCEEEEeCC
Confidence 4678876 699999999999999999999999999999999999 899999996
No 7
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=99.51 E-value=4.2e-15 Score=93.24 Aligned_cols=36 Identities=36% Similarity=0.814 Sum_probs=34.3
Q ss_pred cccCCCCCCcceeEecCceeeccccccccccccccc
Q psy7490 126 VTCHTCRSPDTILQKDTRLFFLQCETCGSRCSVASI 161 (193)
Q Consensus 126 VlC~~C~sPdT~L~k~~rl~~l~C~aCGa~~~V~~~ 161 (193)
|+|++|+||||.|++++|+++++|+|||+.++|+++
T Consensus 1 VlC~~C~~peT~l~~~~~~~~l~C~aCG~~~~v~~i 36 (36)
T 1k81_A 1 VICRECGKPDTKIIKEGRVHLLKCMACGAIRPIRMI 36 (36)
T ss_dssp CCCSSSCSCEEEEEEETTEEEEEEETTTEEEEECCC
T ss_pred CCCcCCCCCCcEEEEeCCcEEEEhhcCCCccccccC
Confidence 899999999999999999999999999999999765
No 8
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=98.70 E-value=5.3e-09 Score=65.30 Aligned_cols=36 Identities=28% Similarity=0.687 Sum_probs=32.9
Q ss_pred cccccccccccccccccceeeeccEEEEEecccCCCcccccc
Q psy7490 147 LQCETCGSRCSVASIKSGFQKDTRLFFLQCETCGSRCSVASI 188 (193)
Q Consensus 147 l~C~aCGa~~~V~~~k~~~~~~~rl~~~~c~~Cga~~~v~~~ 188 (193)
+.|..||++. |.+....|+|+++|+||||.++|++|
T Consensus 1 VlC~~C~~pe------T~l~~~~~~~~l~C~aCG~~~~v~~i 36 (36)
T 1k81_A 1 VICRECGKPD------TKIIKEGRVHLLKCMACGAIRPIRMI 36 (36)
T ss_dssp CCCSSSCSCE------EEEEEETTEEEEEEETTTEEEEECCC
T ss_pred CCCcCCCCCC------cEEEEeCCcEEEEhhcCCCccccccC
Confidence 5799999998 88888899999999999999999875
No 9
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=98.45 E-value=3.7e-08 Score=78.14 Aligned_cols=37 Identities=24% Similarity=0.777 Sum_probs=34.6
Q ss_pred ecccccccccccccccccceeeeccEEEEEecccCCCcccccc
Q psy7490 146 FLQCETCGSRCSVASIKSGFQKDTRLFFLQCETCGSRCSVASI 188 (193)
Q Consensus 146 ~l~C~aCGa~~~V~~~k~~~~~~~rl~~~~c~~Cga~~~v~~~ 188 (193)
|+.|..||++. |.+.+..|+|+++|.||||++||++|
T Consensus 102 yVlC~~C~sPd------T~l~k~~r~~~l~C~ACGa~~~V~~i 138 (138)
T 1nee_A 102 FVICHECNRPD------TRIIREGRISLLKCEACGAKAPLKNV 138 (138)
T ss_dssp HHHHTCCSSCS------SCCEEETTTTEEECSTTSCCCCSCCC
T ss_pred EEECCCCCCcC------cEEEEcCCeEEEEccCCCCCcccCCC
Confidence 69999999998 88888899999999999999999876
No 10
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=98.35 E-value=5.8e-08 Score=77.85 Aligned_cols=40 Identities=30% Similarity=0.759 Sum_probs=33.7
Q ss_pred ecccccccccccccccccceeeeccEEEEEecccCCCccccccccC
Q psy7490 146 FLQCETCGSRCSVASIKSGFQKDTRLFFLQCETCGSRCSVASIKSG 191 (193)
Q Consensus 146 ~l~C~aCGa~~~V~~~k~~~~~~~rl~~~~c~~Cga~~~v~~~~~~ 191 (193)
|+.|..||++. |.+.+..|+|+++|.||||.+||..+|.-
T Consensus 104 yVlC~~C~sPd------T~L~k~~r~~~l~C~ACGa~~~V~~~k~~ 143 (148)
T 2d74_B 104 YVICPVCGSPD------TKIIKRDRFHFLKCEACGAETPIQHLLEH 143 (148)
T ss_dssp HSSCSSSCCTT------CCCCBSSSSBCCCCSSSCCCCCCCC----
T ss_pred EEECCCCCCcC------cEEEEeCCEEEEEecCCCCCccccchhhc
Confidence 69999999998 77778889999999999999999988753
No 11
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=98.29 E-value=4.3e-08 Score=77.80 Aligned_cols=37 Identities=24% Similarity=0.749 Sum_probs=24.9
Q ss_pred ecccccccccccccccccceeeeccEEEEEecccCCCcccccc
Q psy7490 146 FLQCETCGSRCSVASIKSGFQKDTRLFFLQCETCGSRCSVASI 188 (193)
Q Consensus 146 ~l~C~aCGa~~~V~~~k~~~~~~~rl~~~~c~~Cga~~~v~~~ 188 (193)
|+.|..||++. |.+.+..|+|+++|.||||++||++|
T Consensus 103 yVlC~~C~sPd------T~l~k~~r~~~l~C~ACGa~~~V~~i 139 (139)
T 3cw2_K 103 YVECSTCKSLD------TILKKEKKSWYIVCLACGAQTPVKPL 139 (139)
T ss_dssp CSSCCSSSSSC------CCSCSSCSTTTSSCCC----------
T ss_pred eeECCCCCCcC------cEEEEeCCeEEEEecCCCCCCccCCC
Confidence 79999999998 77777889999999999999999875
No 12
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=7.4e-07 Score=72.05 Aligned_cols=36 Identities=19% Similarity=0.524 Sum_probs=32.9
Q ss_pred ecccccccccccccccccceee--eccEEEEEecccCCCccccc
Q psy7490 146 FLQCETCGSRCSVASIKSGFQK--DTRLFFLQCETCGSRCSVAS 187 (193)
Q Consensus 146 ~l~C~aCGa~~~V~~~k~~~~~--~~rl~~~~c~~Cga~~~v~~ 187 (193)
|+.|..|+++. |.++. ..|+|+++|.||||++||..
T Consensus 103 YVlC~~C~sPd------T~L~~~~~~r~~~l~C~ACGa~~~V~~ 140 (157)
T 2e9h_A 103 FVLCPECENPE------TDLHVNPKKQTIGNSCKACGYRGMLDT 140 (157)
T ss_dssp TTSCTTTCCSC------CEEEEETTTTEEEEECSSSCCEEECCC
T ss_pred eEECCCCCCCc------cEEEEecCCCEEEEEccCCCCCCcccc
Confidence 79999999998 77776 68999999999999999975
No 13
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=98.09 E-value=1.3e-06 Score=71.37 Aligned_cols=36 Identities=19% Similarity=0.524 Sum_probs=33.0
Q ss_pred ecccccccccccccccccceee--eccEEEEEecccCCCccccc
Q psy7490 146 FLQCETCGSRCSVASIKSGFQK--DTRLFFLQCETCGSRCSVAS 187 (193)
Q Consensus 146 ~l~C~aCGa~~~V~~~k~~~~~--~~rl~~~~c~~Cga~~~v~~ 187 (193)
|+.|..|+++. |.+.. ..|+|+++|.||||.+||..
T Consensus 96 YVlC~~C~sPd------T~L~k~~~~r~~~l~C~ACGa~~~V~~ 133 (170)
T 2g2k_A 96 FVLCPECENPE------TDLHVNPKKQTIGNSCKACGYRGMLDT 133 (170)
T ss_dssp HHSCTTTSSSC------EEEEEETTTTEEEEEETTTCCCCCSCS
T ss_pred eEECCCCCCCc------cEEEEecCCCEEEEEccccCCcccccc
Confidence 79999999998 78888 68999999999999999964
No 14
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=94.00 E-value=0.03 Score=49.15 Aligned_cols=38 Identities=26% Similarity=0.581 Sum_probs=26.4
Q ss_pred hccccCCCCCCc-ceeEe----cCceeeccccccccccccccc
Q psy7490 124 EYVTCHTCRSPD-TILQK----DTRLFFLQCETCGSRCSVASI 161 (193)
Q Consensus 124 ~YVlC~~C~sPd-T~L~k----~~rl~~l~C~aCGa~~~V~~~ 161 (193)
.--.||.|+++= ..+++ +++.-|++|.-||..-.+..+
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~ 223 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRI 223 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTT
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCc
Confidence 357899999954 45555 367778999888887655433
No 15
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=89.68 E-value=0.059 Score=41.96 Aligned_cols=38 Identities=26% Similarity=0.667 Sum_probs=23.6
Q ss_pred ecccccccccccccccccceeeeccEE----------EEEecccCCCc
Q psy7490 146 FLQCETCGSRCSVASIKSGFQKDTRLF----------FLQCETCGSRC 183 (193)
Q Consensus 146 ~l~C~aCGa~~~V~~~k~~~~~~~rl~----------~~~c~~Cga~~ 183 (193)
..+|..||...++...+..+....+-. +..|..||+..
T Consensus 70 ~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~ 117 (139)
T 3a43_A 70 VFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHD 117 (139)
T ss_dssp EEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCC
T ss_pred cEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCc
Confidence 456777776666666555555555554 56677777654
No 16
>2ogh_A Eukaryotic translation initiation factor EIF-1; alpha-beta protein; NMR {Saccharomyces cerevisiae}
Probab=88.51 E-value=1.1 Score=33.48 Aligned_cols=55 Identities=16% Similarity=0.221 Sum_probs=44.2
Q ss_pred eeEEeccHHHHHHcCCChHHHHHHHHHhhcCceeecCC----CeEEEEeeccHHHHHHHHHHHh
Q psy7490 63 KTSFANFTEICKTLHRLPKHLLDFLLAELGTSGSVDGN----SQLIIKGRFQQKQIENVLRRYI 122 (193)
Q Consensus 63 KTvi~Nf~dIak~L~R~p~hv~ky~~~ELgt~g~id~~----~~lii~G~~~~~~iq~~L~~yI 122 (193)
=|+|.+|.+ .-+++-+.|.|.+.+|+.|++.++ ..+.|+|.+...-.+-+...++
T Consensus 39 VT~V~Gl~~-----~~dlk~lak~lKkk~acggsV~~~~~~g~~I~iQGD~r~~v~~~L~~~g~ 97 (108)
T 2ogh_A 39 LTTVQGVPE-----EYDLKRILKVLKKDFACNGNIVKDPEMGEIIQLQGDQRAKVCEFMISQLG 97 (108)
T ss_dssp EEEEECCCT-----TSCHHHHHHHHHHHHCCCEEEECCTTSSCEEEEESSCHHHHHHHHHHHHT
T ss_pred EEEEeCCCc-----chhHHHHHHHHHHHhcCceEEecCCCCceEEEEcCCHHHHHHHHHHHcCC
Confidence 577889962 348999999999999999998532 2899999999887777666644
No 17
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=88.51 E-value=0.22 Score=35.90 Aligned_cols=28 Identities=32% Similarity=0.807 Sum_probs=19.3
Q ss_pred cccCCCCCCcceeEecCceeecccccccccccc
Q psy7490 126 VTCHTCRSPDTILQKDTRLFFLQCETCGSRCSV 158 (193)
Q Consensus 126 VlC~~C~sPdT~L~k~~rl~~l~C~aCGa~~~V 158 (193)
+.||.|.++ |..+++ +-.|.+|++.-+.
T Consensus 3 ~~CP~C~~~---l~~~~~--~~~C~~C~~~~~~ 30 (81)
T 2jrp_A 3 ITCPVCHHA---LERNGD--TAHCETCAKDFSL 30 (81)
T ss_dssp CCCSSSCSC---CEECSS--EEECTTTCCEEEE
T ss_pred CCCCCCCCc---cccCCC--ceECccccccCCC
Confidence 689999986 445555 3468888875433
No 18
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=88.09 E-value=0.28 Score=31.26 Aligned_cols=35 Identities=26% Similarity=0.449 Sum_probs=22.6
Q ss_pred cccCCCCCCcceeEecCceeecccccccccccccccc
Q psy7490 126 VTCHTCRSPDTILQKDTRLFFLQCETCGSRCSVASIK 162 (193)
Q Consensus 126 VlC~~C~sPdT~L~k~~rl~~l~C~aCGa~~~V~~~k 162 (193)
+.||.|++++ |+-+...-.+.|..||..-+-..+.
T Consensus 6 ~~CP~C~~~~--l~~d~~~gelvC~~CG~v~~e~~id 40 (50)
T 1pft_A 6 KVCPACESAE--LIYDPERGEIVCAKCGYVIEENIID 40 (50)
T ss_dssp CSCTTTSCCC--EEEETTTTEEEESSSCCBCCCCCCC
T ss_pred EeCcCCCCcc--eEEcCCCCeEECcccCCcccccccc
Confidence 4699998854 4443222347899999866555554
No 19
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=87.29 E-value=0.32 Score=28.49 Aligned_cols=20 Identities=45% Similarity=0.803 Sum_probs=17.0
Q ss_pred eccHHHHHHHHHHHhhhccc
Q psy7490 108 RFQQKQIENVLRRYIKEYVT 127 (193)
Q Consensus 108 ~~~~~~iq~~L~~yI~~YVl 127 (193)
+|..++|+.+|++-|+.||-
T Consensus 8 rfdekqieelldncietfva 27 (31)
T 4h62_V 8 RFDEKQIEELLDNCIETFVA 27 (31)
T ss_dssp --CHHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHHHh
Confidence 79999999999999999984
No 20
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=85.09 E-value=0.59 Score=30.64 Aligned_cols=12 Identities=25% Similarity=0.703 Sum_probs=6.5
Q ss_pred ccccCCCCCCcc
Q psy7490 125 YVTCHTCRSPDT 136 (193)
Q Consensus 125 YVlC~~C~sPdT 136 (193)
.|.||.|+..+.
T Consensus 15 ~~~Cp~Cg~~~~ 26 (57)
T 1qyp_A 15 KITCPKCGNDTA 26 (57)
T ss_dssp ECCCTTTCCSEE
T ss_pred EeECCCCCCCEE
Confidence 345666665444
No 21
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=84.77 E-value=0.43 Score=31.88 Aligned_cols=29 Identities=31% Similarity=0.434 Sum_probs=20.4
Q ss_pred cccCCCCCCcceeEecCceeecccccccccc
Q psy7490 126 VTCHTCRSPDTILQKDTRLFFLQCETCGSRC 156 (193)
Q Consensus 126 VlC~~C~sPdT~L~k~~rl~~l~C~aCGa~~ 156 (193)
..||.|++.+ |+.+..--.+.|..||..-
T Consensus 12 ~~Cp~C~~~~--lv~D~~~ge~vC~~CGlVl 40 (58)
T 1dl6_A 12 VTCPNHPDAI--LVEDYRAGDMICPECGLVV 40 (58)
T ss_dssp CSBTTBSSSC--CEECSSSCCEECTTTCCEE
T ss_pred ccCcCCCCCc--eeEeCCCCeEEeCCCCCEE
Confidence 4799999866 5555443458899998753
No 22
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=84.34 E-value=0.74 Score=29.93 Aligned_cols=30 Identities=27% Similarity=0.778 Sum_probs=18.7
Q ss_pred cccCCCCCCcceeEe-------cCceeeccccccccc
Q psy7490 126 VTCHTCRSPDTILQK-------DTRLFFLQCETCGSR 155 (193)
Q Consensus 126 VlC~~C~sPdT~L~k-------~~rl~~l~C~aCGa~ 155 (193)
+.||.|++.+....- +.-..|..|..||.+
T Consensus 10 ~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~ 46 (50)
T 1tfi_A 10 FTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNR 46 (50)
T ss_dssp SCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCE
T ss_pred cCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCe
Confidence 568888887765532 233556667777754
No 23
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=83.72 E-value=0.32 Score=33.80 Aligned_cols=35 Identities=20% Similarity=0.447 Sum_probs=22.6
Q ss_pred hhhccccCCCCCCcceeEecCceeeccccccccccccc
Q psy7490 122 IKEYVTCHTCRSPDTILQKDTRLFFLQCETCGSRCSVA 159 (193)
Q Consensus 122 I~~YVlC~~C~sPdT~L~k~~rl~~l~C~aCGa~~~V~ 159 (193)
+-+...||.|++|=+ +.++.+ .+.|.+||...||.
T Consensus 5 LLeiL~CP~ck~~L~-~~~~~~--~LiC~~cg~~YPI~ 39 (69)
T 2pk7_A 5 LLDILACPICKGPLK-LSADKT--ELISKGAGLAYPIR 39 (69)
T ss_dssp GGGTCCCTTTCCCCE-ECTTSS--EEEETTTTEEEEEE
T ss_pred HHhheeCCCCCCcCe-EeCCCC--EEEcCCCCcEecCc
Confidence 456778999998632 222222 36788888887764
No 24
>2xzm_F EIF1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_F
Probab=80.10 E-value=3.3 Score=30.57 Aligned_cols=53 Identities=6% Similarity=0.070 Sum_probs=41.1
Q ss_pred eeEEeccHHHHHHcCCChHHHHHHHHHhhcCceeecCC----CeEEEEeeccHHHHHHHHHH
Q psy7490 63 KTSFANFTEICKTLHRLPKHLLDFLLAELGTSGSVDGN----SQLIIKGRFQQKQIENVLRR 120 (193)
Q Consensus 63 KTvi~Nf~dIak~L~R~p~hv~ky~~~ELgt~g~id~~----~~lii~G~~~~~~iq~~L~~ 120 (193)
=|+|.+|. -.-++.-++|.|.+.+|+.|++-++ ..+.|+|.+...-.+-++..
T Consensus 32 VT~V~Gl~-----~~~dlk~laK~lKkk~acggsV~~~~~~g~~I~iQGD~r~~v~~~L~~~ 88 (101)
T 2xzm_F 32 FTTVEGIP-----PEFDYEKIMKYWKKWLSCNATIVEEDEGKKVIKLNGDHRNQIQQFLSEE 88 (101)
T ss_dssp EEEEECCC-----TTSCTHHHHHHHHHHHTSCCCEEECSTTCEEEEEESCCHHHHHHHHHHH
T ss_pred EEEEecCC-----CchhHHHHHHHHHHHhcCCeEEecCCCCceEEEEeCcHHHHHHHHHHHc
Confidence 46788885 2458899999999999999998522 18999999988766655544
No 25
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=80.00 E-value=0.49 Score=30.32 Aligned_cols=30 Identities=27% Similarity=0.624 Sum_probs=23.8
Q ss_pred CCcceeEe---cCceeecccccccccccccccc
Q psy7490 133 SPDTILQK---DTRLFFLQCETCGSRCSVASIK 162 (193)
Q Consensus 133 sPdT~L~k---~~rl~~l~C~aCGa~~~V~~~k 162 (193)
+|+|.|+. |..+-|..|++||.+=.+.+|-
T Consensus 1 n~n~~ii~~ple~~~~YRvC~~CgkPi~lsAIv 33 (44)
T 2lo3_A 1 NPNAQLIEDPLDKPIQYRVCEKCGKPLALTAIV 33 (44)
T ss_dssp CCSSCCCCCCCCCCCCEEECTTTCCEEETTTHH
T ss_pred CCccchhhcccCccccchhhcccCCcchHHHHH
Confidence 57888876 5678899999999987776653
No 26
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=78.46 E-value=0.79 Score=40.28 Aligned_cols=31 Identities=19% Similarity=0.353 Sum_probs=22.1
Q ss_pred ccccCCCCCCcceeEecCceeeccccccccc
Q psy7490 125 YVTCHTCRSPDTILQKDTRLFFLQCETCGSR 155 (193)
Q Consensus 125 YVlC~~C~sPdT~L~k~~rl~~l~C~aCGa~ 155 (193)
-+.||+|+++.|.|+.+-.--.+.|..||--
T Consensus 21 ~~~Cp~C~~~~~~lv~D~~~G~~vC~~CGlV 51 (345)
T 4bbr_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLV 51 (345)
T ss_dssp -CCCSSCCCSSCCEEEEGGGTEEEETTTCBE
T ss_pred CCcCCCCCCCCCceeEECCCCcEEeCCCCCC
Confidence 3479999996677776544446789999953
No 27
>2jox_A Churchill protein; zinc, transcription; NMR {Homo sapiens}
Probab=77.98 E-value=2 Score=32.24 Aligned_cols=59 Identities=19% Similarity=0.526 Sum_probs=41.1
Q ss_pred HhhhccccCCCCCCcceeEe------cCc----eeecccccccccccccccccceee--eccEEEEEecccCC
Q psy7490 121 YIKEYVTCHTCRSPDTILQK------DTR----LFFLQCETCGSRCSVASIKSGFQK--DTRLFFLQCETCGS 181 (193)
Q Consensus 121 yI~~YVlC~~C~sPdT~L~k------~~r----l~~l~C~aCGa~~~V~~~k~~~~~--~~rl~~~~c~~Cga 181 (193)
|+-.|+-|..|++-|-.++- +++ .+.-.|..|+.. |+.+-=.|.. ....|-+.|..||.
T Consensus 22 yl~Nf~gC~~C~~~~~~~v~nk~~~eedgeEiity~H~C~nC~Hv--IA~HeYtF~V~~~yQeY~M~ClLCG~ 92 (106)
T 2jox_A 22 FLLNFTGCAVCSKRDFMLITNKSLKEEDGEEIVTYDHLCKNCHHV--IARHEYTFSIMDEFQEYTMLCLLCGK 92 (106)
T ss_dssp CTTTBCCCSSSCCSSCEEEEEEEEEEETTEEEEEEEEEETTTCCE--EEEEEEEEEEETTEEEEEEEETTTEE
T ss_pred eeeechhhhhcCCCceEEEeccccccCCCcEEEEEEEecCCCceE--eeeeeEEEEEecCeeeeeeeeeeeCC
Confidence 56779999999999965542 122 556789999875 3333333433 56789999999995
No 28
>2if1_A EIF1, SUI1; translation initiation factor; NMR {Homo sapiens} SCOP: d.64.1.1
Probab=77.86 E-value=2.6 Score=32.49 Aligned_cols=53 Identities=11% Similarity=0.182 Sum_probs=42.6
Q ss_pred eeEEeccHHHHHHcCCChHHHHHHHHHhhcCceeecCC----CeEEEEeeccHHHHHHHHHH
Q psy7490 63 KTSFANFTEICKTLHRLPKHLLDFLLAELGTSGSVDGN----SQLIIKGRFQQKQIENVLRR 120 (193)
Q Consensus 63 KTvi~Nf~dIak~L~R~p~hv~ky~~~ELgt~g~id~~----~~lii~G~~~~~~iq~~L~~ 120 (193)
=|+|.+|.. .-+++-+.|.|.+.+|+.|++-++ +.+.|+|.+...-.+-+++.
T Consensus 57 VT~V~GL~~-----~~dlk~laK~LKkk~acgGtVk~~~e~g~~I~IQGD~r~~I~~~L~~~ 113 (126)
T 2if1_A 57 LTTVQGIAD-----DYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEI 113 (126)
T ss_dssp BCEEBSCCT-----TSCHHHHHTTHHHHTCCCEEEECCTTTSSEEEESBCCHHHHHHHHHHH
T ss_pred EEEEeCCCC-----chhHHHHHHHHHHHhcCCeEEecCCCCccEEEEcCCHHHHHHHHHHHc
Confidence 588999973 348999999999999999998532 48999999988766655554
No 29
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=77.65 E-value=0.51 Score=29.96 Aligned_cols=29 Identities=28% Similarity=0.441 Sum_probs=21.5
Q ss_pred ccCCCCCCcceeEecCceeeccccccccc
Q psy7490 127 TCHTCRSPDTILQKDTRLFFLQCETCGSR 155 (193)
Q Consensus 127 lC~~C~sPdT~L~k~~rl~~l~C~aCGa~ 155 (193)
.|..|+..+|-+-+.+.--...|+|||-.
T Consensus 3 ~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~ 31 (43)
T 2vut_I 3 TCTNCFTQTTPLWRRNPEGQPLCNACGLF 31 (43)
T ss_dssp CCSSSCCCCCSCCEECTTSCEECHHHHHH
T ss_pred cCCccCCCCCCccccCCCCCcccHHHHHH
Confidence 59999999998877532223689999864
No 30
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=77.57 E-value=0.55 Score=30.24 Aligned_cols=30 Identities=27% Similarity=0.518 Sum_probs=22.8
Q ss_pred cccCCCCCCcceeEecCceeeccccccccc
Q psy7490 126 VTCHTCRSPDTILQKDTRLFFLQCETCGSR 155 (193)
Q Consensus 126 VlC~~C~sPdT~L~k~~rl~~l~C~aCGa~ 155 (193)
..|..|+..+|-+-+.+.--...|+|||-.
T Consensus 5 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~ 34 (46)
T 1gnf_A 5 RECVNCGATATPLWRRDRTGHYLCNACGLY 34 (46)
T ss_dssp CCCTTTCCCCCSSCBCCTTCCCBCSHHHHH
T ss_pred CCCCCcCCCCCCcCccCCCCCccchHHHHH
Confidence 469999999998877543223789999864
No 31
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=76.64 E-value=0.89 Score=31.44 Aligned_cols=34 Identities=9% Similarity=0.132 Sum_probs=21.1
Q ss_pred hhccccCCCCCCcceeEecCceeeccccccccccccc
Q psy7490 123 KEYVTCHTCRSPDTILQKDTRLFFLQCETCGSRCSVA 159 (193)
Q Consensus 123 ~~YVlC~~C~sPdT~L~k~~rl~~l~C~aCGa~~~V~ 159 (193)
-+.+.||.|++|= .+.++.+ .+.|.+||...||.
T Consensus 6 L~iL~CP~ck~~L-~~~~~~~--~LiC~~cg~~YPI~ 39 (68)
T 2jr6_A 6 LDILVCPVTKGRL-EYHQDKQ--ELWSRQAKLAYPIK 39 (68)
T ss_dssp SCCCBCSSSCCBC-EEETTTT--EEEETTTTEEEEEE
T ss_pred hhheECCCCCCcC-eEeCCCC--EEEcCCCCcEecCC
Confidence 3567899999752 2223222 35688888777664
No 32
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=76.31 E-value=0.32 Score=33.69 Aligned_cols=34 Identities=21% Similarity=0.438 Sum_probs=20.6
Q ss_pred hhccccCCCCCCcceeEecCceeeccccccccccccc
Q psy7490 123 KEYVTCHTCRSPDTILQKDTRLFFLQCETCGSRCSVA 159 (193)
Q Consensus 123 ~~YVlC~~C~sPdT~L~k~~rl~~l~C~aCGa~~~V~ 159 (193)
-+.+.||.|++|= .+.++.+ .+.|.+||...||.
T Consensus 6 L~iL~CP~ck~~L-~~~~~~~--~LiC~~cg~~YPI~ 39 (68)
T 2hf1_A 6 LEILVCPLCKGPL-VFDKSKD--ELICKGDRLAFPIK 39 (68)
T ss_dssp EEECBCTTTCCBC-EEETTTT--EEEETTTTEEEEEE
T ss_pred hhheECCCCCCcC-eEeCCCC--EEEcCCCCcEecCC
Confidence 3456889998752 2222222 35688888777663
No 33
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=75.69 E-value=1.1 Score=36.98 Aligned_cols=31 Identities=19% Similarity=0.353 Sum_probs=22.8
Q ss_pred ccccCCCCCCcceeEecCceeeccccccccc
Q psy7490 125 YVTCHTCRSPDTILQKDTRLFFLQCETCGSR 155 (193)
Q Consensus 125 YVlC~~C~sPdT~L~k~~rl~~l~C~aCGa~ 155 (193)
-..||.|++..+.|+.+..--.+.|..||.-
T Consensus 21 ~~~CPECGs~~t~IV~D~erGE~VCsdCGLV 51 (197)
T 3k1f_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLV 51 (197)
T ss_dssp CCCCTTTCCSSCCEEEEGGGTEEEETTTCBB
T ss_pred CeECcCCCCcCCeEEEeCCCCEEEEcCCCCC
Confidence 3479999996677777544445789999875
No 34
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=74.52 E-value=1.8 Score=31.19 Aligned_cols=32 Identities=19% Similarity=0.350 Sum_probs=18.8
Q ss_pred ccccCCCCCCcceeEe---cCceeecccccccccc
Q psy7490 125 YVTCHTCRSPDTILQK---DTRLFFLQCETCGSRC 156 (193)
Q Consensus 125 YVlC~~C~sPdT~L~k---~~rl~~l~C~aCGa~~ 156 (193)
.-.||-|+..++.-++ +.++-.+.|..||...
T Consensus 23 ~F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~ 57 (85)
T 1wii_A 23 QFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEF 57 (85)
T ss_dssp CCCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEE
T ss_pred eEcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeE
Confidence 4467777766654433 3456666677776554
No 35
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=74.23 E-value=4.2 Score=29.43 Aligned_cols=63 Identities=25% Similarity=0.472 Sum_probs=39.5
Q ss_pred eeccHHHHHHHH-----HHHhhhccccCCCCCCcceeEecCceeecccccccccccccccccceeeeccEEEEEecccCC
Q psy7490 107 GRFQQKQIENVL-----RRYIKEYVTCHTCRSPDTILQKDTRLFFLQCETCGSRCSVASIKSGFQKDTRLFFLQCETCGS 181 (193)
Q Consensus 107 G~~~~~~iq~~L-----~~yI~~YVlC~~C~sPdT~L~k~~rl~~l~C~aCGa~~~V~~~k~~~~~~~rl~~~~c~~Cga 181 (193)
++++++.|+.+. ..+|..|| .+.+.++-+...|..|+..+|- |......-..+|-+||+
T Consensus 3 ~~~~~~~i~~ik~~~~i~~v~~~~~----------~lk~~G~~~~~~CPfh~e~~pS------f~V~~~k~~~~Cf~cg~ 66 (103)
T 1d0q_A 3 HRIPEETIEAIRRGVDIVDVIGEYV----------QLKRQGRNYFGLCPFHGEKTPS------FSVSPEKQIFHCFGCGA 66 (103)
T ss_dssp TTSCHHHHHHHHHHCCHHHHHTTTS----------CCEEETTEEEECCSSSCCSSCC------EEEETTTTEEEETTTCC
T ss_pred CcCCHHHHHHHHHcCCHHHHHHHhC----------CeeecCCeEEEECCCCCCCCCc------EEEEcCCCEEEECCCCC
Confidence 456777777764 36777763 3566777677889999876632 22222222457999997
Q ss_pred Cccc
Q psy7490 182 RCSV 185 (193)
Q Consensus 182 ~~~v 185 (193)
...|
T Consensus 67 gGd~ 70 (103)
T 1d0q_A 67 GGNA 70 (103)
T ss_dssp EECH
T ss_pred CCCH
Confidence 6544
No 36
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=73.04 E-value=1.1 Score=31.02 Aligned_cols=30 Identities=23% Similarity=0.691 Sum_probs=22.8
Q ss_pred ccccCCCCCCcceeEecCceeecccccccccc
Q psy7490 125 YVTCHTCRSPDTILQKDTRLFFLQCETCGSRC 156 (193)
Q Consensus 125 YVlC~~C~sPdT~L~k~~rl~~l~C~aCGa~~ 156 (193)
-|.||.|.+.-|..-.-.- .+.|..||..=
T Consensus 7 ~VKCp~C~niq~VFShA~t--vV~C~~Cg~~L 36 (66)
T 1qxf_A 7 KVKCPDCEHEQVIFDHPST--IVKCIICGRTV 36 (66)
T ss_dssp EEECTTTCCEEEEESSCSS--CEECSSSCCEE
T ss_pred EEECCCCCCceEEEecCce--EEEcccCCCEE
Confidence 4899999998887766554 47899998753
No 37
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=72.91 E-value=1.4 Score=30.55 Aligned_cols=34 Identities=18% Similarity=0.322 Sum_probs=21.8
Q ss_pred hhccccCCCCCCcceeEecCceeeccccccccccccc
Q psy7490 123 KEYVTCHTCRSPDTILQKDTRLFFLQCETCGSRCSVA 159 (193)
Q Consensus 123 ~~YVlC~~C~sPdT~L~k~~rl~~l~C~aCGa~~~V~ 159 (193)
-+.+.||.|++|= .+..+.+ .+.|.+||...||.
T Consensus 6 L~iL~CP~ck~~L-~~~~~~~--~LiC~~cg~~YPI~ 39 (70)
T 2js4_A 6 LDILVCPVCKGRL-EFQRAQA--ELVCNADRLAFPVR 39 (70)
T ss_dssp CCCCBCTTTCCBE-EEETTTT--EEEETTTTEEEEEE
T ss_pred hhheECCCCCCcC-EEeCCCC--EEEcCCCCceecCC
Confidence 3567899999952 2222222 36788888887763
No 38
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=71.23 E-value=0.72 Score=31.89 Aligned_cols=37 Identities=14% Similarity=0.187 Sum_probs=23.9
Q ss_pred HHhhhccccCCCCCCcceeEecCceeeccccccccccccc
Q psy7490 120 RYIKEYVTCHTCRSPDTILQKDTRLFFLQCETCGSRCSVA 159 (193)
Q Consensus 120 ~yI~~YVlC~~C~sPdT~L~k~~rl~~l~C~aCGa~~~V~ 159 (193)
..+-+...||.|++|= .+..+++ .+.|.+||...||.
T Consensus 5 ~~LLeiL~CP~ck~~L-~~~~~~g--~LvC~~c~~~YPI~ 41 (67)
T 2jny_A 5 PQLLEVLACPKDKGPL-RYLESEQ--LLVNERLNLAYRID 41 (67)
T ss_dssp GGGTCCCBCTTTCCBC-EEETTTT--EEEETTTTEEEEEE
T ss_pred HHHHHHhCCCCCCCcC-eEeCCCC--EEEcCCCCccccCC
Confidence 3455678899999953 2333332 25688888877764
No 39
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=71.09 E-value=1.4 Score=38.46 Aligned_cols=32 Identities=19% Similarity=0.326 Sum_probs=23.6
Q ss_pred ccccCCCCCCcceeEecCceeecccccccccc
Q psy7490 125 YVTCHTCRSPDTILQKDTRLFFLQCETCGSRC 156 (193)
Q Consensus 125 YVlC~~C~sPdT~L~k~~rl~~l~C~aCGa~~ 156 (193)
-..||.|+++.+.++.+...-.+.|..||.--
T Consensus 21 ~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl 52 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLVL 52 (345)
T ss_dssp CCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCC
T ss_pred CCcCcCCCCCCCceEEECCCCCEecCCCCeEc
Confidence 34799999986667665444467899999854
No 40
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=70.82 E-value=2.4 Score=32.66 Aligned_cols=25 Identities=12% Similarity=0.355 Sum_probs=11.0
Q ss_pred ChHHHHHHHHHhhcCceeecCCCeEEE
Q psy7490 79 LPKHLLDFLLAELGTSGSVDGNSQLII 105 (193)
Q Consensus 79 ~p~hv~ky~~~ELgt~g~id~~~~lii 105 (193)
+|+.+ +|....+ +.|++=++-+|.|
T Consensus 40 ~~e~l-~faf~~~-~~gt~~e~A~L~i 64 (139)
T 3a43_A 40 AEDIV-KFAMEQL-FAGTIAEGAEIEF 64 (139)
T ss_dssp CHHHH-HHHHHHH-HTTSTTTTCEEEE
T ss_pred hHHHH-HHHHHHH-HcCCcccCCEEEE
Confidence 44443 4444444 3344433445555
No 41
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=70.56 E-value=0.86 Score=31.22 Aligned_cols=42 Identities=24% Similarity=0.449 Sum_probs=28.0
Q ss_pred cccCCCCCCcceeEecCceeecccccccc-------cccccccccceee
Q psy7490 126 VTCHTCRSPDTILQKDTRLFFLQCETCGS-------RCSVASIKSGFQK 167 (193)
Q Consensus 126 VlC~~C~sPdT~L~k~~rl~~l~C~aCGa-------~~~V~~~k~~~~~ 167 (193)
..|..|+..+|-+-+.+.--...|+|||- .+|+...+.+++.
T Consensus 8 ~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~~~~RP~~~~~~~i~~ 56 (63)
T 3dfx_A 8 TSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNINRPLTMKKEGIQT 56 (63)
T ss_dssp CCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHSSCCCGGGCCSSCCC
T ss_pred CcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHcCCCCCcCcCCCcccc
Confidence 46999999999888754322378999985 4455444444443
No 42
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=70.55 E-value=3.6 Score=36.56 Aligned_cols=60 Identities=20% Similarity=0.376 Sum_probs=38.4
Q ss_pred eeccHHHHHHHH-----HHHhhhccccCCCCCCcceeEecCceeecccccccccccccccccceee--eccEEEEEeccc
Q psy7490 107 GRFQQKQIENVL-----RRYIKEYVTCHTCRSPDTILQKDTRLFFLQCETCGSRCSVASIKSGFQK--DTRLFFLQCETC 179 (193)
Q Consensus 107 G~~~~~~iq~~L-----~~yI~~YVlC~~C~sPdT~L~k~~rl~~l~C~aCGa~~~V~~~k~~~~~--~~rl~~~~c~~C 179 (193)
|+++++ |+++. ..+|.+|| .|.+.++-+...|..|+..+|- |.. .++ +.+|-.|
T Consensus 1 ~~i~~~-i~~i~~~~dI~dvi~~~v----------~lkk~G~~~~~~CPfh~ektpS------f~V~~~k~--~~~CFgC 61 (407)
T 2au3_A 1 GHMSSD-IDELRREIDIVDVISEYL----------NLEKVGSNYRTNCPFHPDDTPS------FYVSPSKQ--IFKCFGC 61 (407)
T ss_dssp --CCCH-HHHHHHHCCHHHHHHHHS----------CCEEETTEEEECCSSSCCSSCC------EEEETTTT--EEEETTT
T ss_pred CCCcHH-HHHHHHhCCHHHHHHHhc----------ccccCCCeEEeeCcCCCCCCCe------EEEECCCC--EEEECCC
Confidence 566777 77764 46777775 4667777677789999876541 212 123 4589999
Q ss_pred CCCccc
Q psy7490 180 GSRCSV 185 (193)
Q Consensus 180 ga~~~v 185 (193)
|+.-.|
T Consensus 62 g~gGd~ 67 (407)
T 2au3_A 62 GVGGDA 67 (407)
T ss_dssp CCEECH
T ss_pred CCCCCH
Confidence 976544
No 43
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=67.40 E-value=1.9 Score=29.69 Aligned_cols=29 Identities=21% Similarity=0.631 Sum_probs=18.3
Q ss_pred ccccCCCCCCcceeEecCceeeccccccccc
Q psy7490 125 YVTCHTCRSPDTILQKDTRLFFLQCETCGSR 155 (193)
Q Consensus 125 YVlC~~C~sPdT~L~k~~rl~~l~C~aCGa~ 155 (193)
-|.||.|.+.-|..-.-.- -+.|..||..
T Consensus 15 ~VkCp~C~~~q~VFSha~t--~V~C~~Cgt~ 43 (63)
T 3j20_W 15 RVKCIDCGNEQIVFSHPAT--KVRCLICGAT 43 (63)
T ss_dssp EEECSSSCCEEEEESSCSS--CEECSSSCCE
T ss_pred EEECCCCCCeeEEEecCCe--EEEccCcCCE
Confidence 3677888776666544433 3677777754
No 44
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=67.23 E-value=1.4 Score=30.85 Aligned_cols=30 Identities=23% Similarity=0.523 Sum_probs=22.5
Q ss_pred ccccCCCCCCcceeEec--Cceeeccccccccc
Q psy7490 125 YVTCHTCRSPDTILQKD--TRLFFLQCETCGSR 155 (193)
Q Consensus 125 YVlC~~C~sPdT~L~k~--~rl~~l~C~aCGa~ 155 (193)
-..|..|+..+|-+-+. +.-- ..|+|||-.
T Consensus 8 ~~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~ 39 (71)
T 2kae_A 8 SFQCSNCSVTETIRWRNIRSKEG-IQCNACFIY 39 (71)
T ss_dssp CCCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHH
T ss_pred CCcCCccCCCCCCccccCCCCCC-ccchHHHHH
Confidence 35799999999988775 2222 789999853
No 45
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=66.80 E-value=3.9 Score=31.21 Aligned_cols=45 Identities=18% Similarity=0.577 Sum_probs=28.2
Q ss_pred eeccHHHHHHHHHHHhhhccccCCCCCCcceeEe-cCceeecccccccccc
Q psy7490 107 GRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQK-DTRLFFLQCETCGSRC 156 (193)
Q Consensus 107 G~~~~~~iq~~L~~yI~~YVlC~~C~sPdT~L~k-~~rl~~l~C~aCGa~~ 156 (193)
|..-.+.+.++-..=-.+| .||.|+. +.+.+ ..++| +|..||..-
T Consensus 43 GaslRK~vkkiE~~q~aky-tCPfCGk--~~vKR~avGIW--~C~~Cgk~f 88 (116)
T 3cc2_Z 43 GRVSRRRVAEIESEMNEDH-ACPNCGE--DRVDRQGTGIW--QCSYCDYKF 88 (116)
T ss_dssp CHHHHHHHHHHHHHHHSCE-ECSSSCC--EEEEEEETTEE--EETTTCCEE
T ss_pred chHHHHHHHHHHHHhccCC-cCCCCCC--ceeEecCceeE--ECCCCCCEE
Confidence 5445566666533333444 8999997 34544 45665 899998763
No 46
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=66.68 E-value=3.4 Score=26.76 Aligned_cols=28 Identities=21% Similarity=0.508 Sum_probs=15.0
Q ss_pred ccccCCCCCCcceeEecCceeeccccccccc
Q psy7490 125 YVTCHTCRSPDTILQKDTRLFFLQCETCGSR 155 (193)
Q Consensus 125 YVlC~~C~sPdT~L~k~~rl~~l~C~aCGa~ 155 (193)
+-.||.|+++-......+| ..|..||..
T Consensus 19 ~k~CP~CG~~~fm~~~~~R---~~C~kCG~t 46 (50)
T 3j20_Y 19 NKFCPRCGPGVFMADHGDR---WACGKCGYT 46 (50)
T ss_dssp SEECSSSCSSCEEEECSSE---EECSSSCCE
T ss_pred cccCCCCCCceEEecCCCe---EECCCCCCE
Confidence 4458888775322222222 467777753
No 47
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=66.41 E-value=3.4 Score=30.73 Aligned_cols=30 Identities=17% Similarity=0.553 Sum_probs=21.2
Q ss_pred cccCCCCCCcceeEe-------cCceeeccccccccc
Q psy7490 126 VTCHTCRSPDTILQK-------DTRLFFLQCETCGSR 155 (193)
Q Consensus 126 VlC~~C~sPdT~L~k-------~~rl~~l~C~aCGa~ 155 (193)
+.||.|++.+....- +.-..|..|..||.+
T Consensus 73 ~~Cp~C~~~~a~~~q~q~rsade~mt~fy~C~~C~~~ 109 (113)
T 3h0g_I 73 KECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFA 109 (113)
T ss_dssp SCCSSSCCSCEEEECCCCSSCCCCCCCEEEESSSCCC
T ss_pred cCCCCCCCceEEEEEEecccCCCCCeeEEEcCCCCCE
Confidence 689999998876542 234556778888765
No 48
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=65.96 E-value=1.8 Score=33.60 Aligned_cols=41 Identities=24% Similarity=0.343 Sum_probs=29.4
Q ss_pred CCCCCcceeEecCceeecccccccccccccccccceeeeccEEEEEecccCCC
Q psy7490 130 TCRSPDTILQKDTRLFFLQCETCGSRCSVASIKSGFQKDTRLFFLQCETCGSR 182 (193)
Q Consensus 130 ~C~sPdT~L~k~~rl~~l~C~aCGa~~~V~~~k~~~~~~~rl~~~~c~~Cga~ 182 (193)
.+.+.. ..+++-+.|-.+|.+||.......- ...|..||+.
T Consensus 117 ~v~~~~-~~i~~~~~~~y~C~~Cg~~~~~~~~-----------~~~Cp~CG~~ 157 (165)
T 2lcq_A 117 RFRTLK-RGIKKVIKWRYVCIGCGRKFSTLPP-----------GGVCPDCGSK 157 (165)
T ss_dssp CEECCS-CCCSSCCCCCEEESSSCCEESSCCG-----------GGBCTTTCCB
T ss_pred eEEchh-hhccccccEEEECCCCCCcccCCCC-----------CCcCCCCCCc
Confidence 334555 7778889999999999987643210 1269999996
No 49
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=64.91 E-value=2.3 Score=34.20 Aligned_cols=12 Identities=25% Similarity=0.703 Sum_probs=6.3
Q ss_pred cccCCCCCCcce
Q psy7490 126 VTCHTCRSPDTI 137 (193)
Q Consensus 126 VlC~~C~sPdT~ 137 (193)
+.||.|++.+..
T Consensus 138 ~~Cp~C~~~~a~ 149 (178)
T 3po3_S 138 FTCGKCKEKKVS 149 (178)
T ss_dssp SCCSSSCCSCEE
T ss_pred cCCCCCCCCceE
Confidence 355555555543
No 50
>1d1r_A Hypothetical 11.4 KD protein YCIH in PYRF-OSMB intergenic region; alpha-beta plait, open-faced beta sandwich, ferredoxin-like fold; NMR {Escherichia coli} SCOP: d.64.1.1
Probab=64.58 E-value=3.9 Score=31.01 Aligned_cols=54 Identities=13% Similarity=0.030 Sum_probs=42.2
Q ss_pred eeeEEeccHHHHHHcCCChHHHHHHHHHhhcCceeecCCCeEEEEeeccHHHHHHHHHH
Q psy7490 62 KKTSFANFTEICKTLHRLPKHLLDFLLAELGTSGSVDGNSQLIIKGRFQQKQIENVLRR 120 (193)
Q Consensus 62 ~KTvi~Nf~dIak~L~R~p~hv~ky~~~ELgt~g~id~~~~lii~G~~~~~~iq~~L~~ 120 (193)
.-|+|.+|..-. -++.-+.|.|.+.+|+.|++. ++.+.|+|.+...-.+-+++.
T Consensus 46 ~VT~V~Gl~~~~----~dlk~laK~LKkk~acgGtVk-~~~IeiQGD~r~~i~~~L~~~ 99 (116)
T 1d1r_A 46 GVCLITGVDLDD----AELTKLAAELKKKCGCGGAVK-DGVIEIQGDKRDLLKSLLEAK 99 (116)
T ss_dssp CCEEEECCCSCH----HHHHHHHHHHTTSSSSCCBCC-SSCEEECSCCHHHHHHHHHHH
T ss_pred eEEEEeCCcCch----hhHHHHHHHHHHHhcCCcEEc-CCEEEEeCcHHHHHHHHHHHc
Confidence 358899986422 246789999999999999995 679999999988766665554
No 51
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=64.57 E-value=2.8 Score=29.21 Aligned_cols=32 Identities=19% Similarity=0.567 Sum_probs=20.5
Q ss_pred cccCCCCCCcceeEecCceeecccccccccccccccc
Q psy7490 126 VTCHTCRSPDTILQKDTRLFFLQCETCGSRCSVASIK 162 (193)
Q Consensus 126 VlC~~C~sPdT~L~k~~rl~~l~C~aCGa~~~V~~~k 162 (193)
|-|| |++. .+.++ +---.+|. ||+.-.++..+
T Consensus 5 v~C~-C~~~--~~~~~-~~kT~~C~-CG~~~~~~k~r 36 (71)
T 1gh9_A 5 FRCD-CGRA--LYSRE-GAKTRKCV-CGRTVNVKDRR 36 (71)
T ss_dssp EEET-TSCC--EEEET-TCSEEEET-TTEEEECCSSS
T ss_pred EECC-CCCE--EEEcC-CCcEEECC-CCCeeeeceEE
Confidence 5688 8876 33333 33457887 88887766654
No 52
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=64.55 E-value=3.9 Score=30.47 Aligned_cols=26 Identities=27% Similarity=0.760 Sum_probs=19.2
Q ss_pred cccCCCCCCcceeEecCceeecccccccccc
Q psy7490 126 VTCHTCRSPDTILQKDTRLFFLQCETCGSRC 156 (193)
Q Consensus 126 VlC~~C~sPdT~L~k~~rl~~l~C~aCGa~~ 156 (193)
.+||.|+.+ |..+++. ..|.+|++.-
T Consensus 33 ~~CP~Cq~e---L~~~g~~--~hC~~C~~~f 58 (101)
T 2jne_A 33 LHCPQCQHV---LDQDNGH--ARCRSCGEFI 58 (101)
T ss_dssp CBCSSSCSB---EEEETTE--EEETTTCCEE
T ss_pred ccCccCCCc---ceecCCE--EECccccchh
Confidence 799999987 5556663 3699998853
No 53
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=62.64 E-value=3.3 Score=29.86 Aligned_cols=29 Identities=24% Similarity=0.605 Sum_probs=19.7
Q ss_pred ccccCCCCCCcceeEecCceeeccccccccc
Q psy7490 125 YVTCHTCRSPDTILQKDTRLFFLQCETCGSR 155 (193)
Q Consensus 125 YVlC~~C~sPdT~L~k~~rl~~l~C~aCGa~ 155 (193)
-|.|+.|.+.-|..-.-.- .+.|..||..
T Consensus 34 ~VkCp~C~~~q~VFSha~t--~V~C~~Cg~~ 62 (82)
T 3u5c_b 34 DVKCPGCLNITTVFSHAQT--AVTCESCSTI 62 (82)
T ss_dssp EEECTTSCSCEEEESBCSS--CCCCSSSCCC
T ss_pred EEECCCCCCeeEEEecCCe--EEEccccCCE
Confidence 3778888877776655443 3677777764
No 54
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=61.13 E-value=2.5 Score=30.40 Aligned_cols=29 Identities=24% Similarity=0.621 Sum_probs=19.4
Q ss_pred ccccCCCCCCcceeEecCceeeccccccccc
Q psy7490 125 YVTCHTCRSPDTILQKDTRLFFLQCETCGSR 155 (193)
Q Consensus 125 YVlC~~C~sPdT~L~k~~rl~~l~C~aCGa~ 155 (193)
-|.||.|.+.-|..-.-.- .+.|..||..
T Consensus 32 ~VkCp~C~n~q~VFShA~t--~V~C~~Cg~~ 60 (81)
T 2xzm_6 32 DVKCAQCQNIQMIFSNAQS--TIICEKCSAI 60 (81)
T ss_dssp EEECSSSCCEEEEETTCSS--CEECSSSCCE
T ss_pred EeECCCCCCeeEEEecCcc--EEEccCCCCE
Confidence 4788888877666654433 4677777765
No 55
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=60.89 E-value=1.5 Score=30.22 Aligned_cols=30 Identities=27% Similarity=0.427 Sum_probs=21.1
Q ss_pred cccCCCCCCcceeEecCceeeccccccccc
Q psy7490 126 VTCHTCRSPDTILQKDTRLFFLQCETCGSR 155 (193)
Q Consensus 126 VlC~~C~sPdT~L~k~~rl~~l~C~aCGa~ 155 (193)
..|..|+.-+|-+-+.+.--...|+|||-.
T Consensus 10 ~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~ 39 (66)
T 4gat_A 10 TTCTNCFTQTTPLWRRNPEGQPLCNACGLF 39 (66)
T ss_dssp CCCTTTCCCCCSSCEEETTTEEECHHHHHH
T ss_pred CCCCCCCCCCCCcCCcCCCCCCccHHHHHH
Confidence 479999999998876432112669999643
No 56
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=60.69 E-value=4 Score=35.61 Aligned_cols=43 Identities=33% Similarity=0.600 Sum_probs=30.2
Q ss_pred ecccccccccccccccccceeeeccEEEEEecccCCCccccccc
Q psy7490 146 FLQCETCGSRCSVASIKSGFQKDTRLFFLQCETCGSRCSVASIK 189 (193)
Q Consensus 146 ~l~C~aCGa~~~V~~~k~~~~~~~rl~~~~c~~Cga~~~v~~~~ 189 (193)
...|..||+.-.+.-++.+ ....+.=+++|..||.+-.+..++
T Consensus 182 ~~~CPvCGs~P~~s~l~~~-g~~~G~R~l~Cs~C~t~W~~~R~~ 224 (309)
T 2fiy_A 182 RTLCPACGSPPMAGMIRQG-GKETGLRYLSCSLCACEWHYVRIK 224 (309)
T ss_dssp CSSCTTTCCCEEEEEEEC-----CCEEEEEETTTCCEEECCTTS
T ss_pred CCCCCCCCCcCceeEEeec-CCCCCcEEEEeCCCCCEEeecCcC
Confidence 5789999999876655531 134566699999999987766543
No 57
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=59.57 E-value=5.5 Score=29.92 Aligned_cols=31 Identities=19% Similarity=0.633 Sum_probs=22.5
Q ss_pred cccCCCCCCcceeEe-------cCceeecccccccccc
Q psy7490 126 VTCHTCRSPDTILQK-------DTRLFFLQCETCGSRC 156 (193)
Q Consensus 126 VlC~~C~sPdT~L~k-------~~rl~~l~C~aCGa~~ 156 (193)
+.||.|++.+....- +.-..|..|..||.+-
T Consensus 73 ~~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C~~~w 110 (122)
T 1twf_I 73 RECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIF 110 (122)
T ss_dssp CCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEE
T ss_pred CCCCCCCCCEEEEEEecCccCCCCceEEEEeCCCCCEe
Confidence 689999998876642 2346677888898864
No 58
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=57.88 E-value=5 Score=26.47 Aligned_cols=33 Identities=30% Similarity=0.705 Sum_probs=20.6
Q ss_pred hhhccccCCCCCCcceeEecCceeecccc--ccccccccc
Q psy7490 122 IKEYVTCHTCRSPDTILQKDTRLFFLQCE--TCGSRCSVA 159 (193)
Q Consensus 122 I~~YVlC~~C~sPdT~L~k~~rl~~l~C~--aCGa~~~V~ 159 (193)
+-+...||.|++| |.-+. -.+.|. .||...||.
T Consensus 7 lL~iL~CP~c~~~---L~~~~--~~L~C~~~~c~~~YPI~ 41 (56)
T 2kpi_A 7 LLEILACPACHAP---LEERD--AELICTGQDCGLAYPVR 41 (56)
T ss_dssp CTTSCCCSSSCSC---EEEET--TEEEECSSSCCCEEEEE
T ss_pred HHhheeCCCCCCc---ceecC--CEEEcCCcCCCcEEeeE
Confidence 3456788888885 33322 235677 777776653
No 59
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=57.87 E-value=11 Score=27.04 Aligned_cols=40 Identities=23% Similarity=0.674 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhhhccccCCCCCCcceeEe-cCceeeccccccccc
Q psy7490 111 QKQIENVLRRYIKEYVTCHTCRSPDTILQK-DTRLFFLQCETCGSR 155 (193)
Q Consensus 111 ~~~iq~~L~~yI~~YVlC~~C~sPdT~L~k-~~rl~~l~C~aCGa~ 155 (193)
.+.+.++-..=-.+| .||.|+... +.+ ..++| +|..||..
T Consensus 22 RK~vkkie~~q~~ky-~CpfCGk~~--vkR~a~GIW--~C~kCg~~ 62 (83)
T 3j21_i 22 RRRVAAVEAKMRQKH-TCPVCGRKA--VKRISTGIW--QCQKCGAT 62 (83)
T ss_dssp HHHHHHHHHHHHSCB-CCSSSCSSC--EEEEETTEE--EETTTCCE
T ss_pred HHHHHHHHHHhhccc-CCCCCCCce--eEecCcCeE--EcCCCCCE
Confidence 344444443333456 799999873 444 34564 79999875
No 60
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=57.62 E-value=5.4 Score=34.56 Aligned_cols=12 Identities=17% Similarity=0.291 Sum_probs=7.6
Q ss_pred EEEEeeccHHHH
Q psy7490 103 LIIKGRFQQKQI 114 (193)
Q Consensus 103 lii~G~~~~~~i 114 (193)
-++.|.++++.|
T Consensus 217 ~vl~g~i~p~~l 228 (309)
T 1pqv_S 217 KIANGDITPEFL 228 (309)
T ss_pred HHHcCCCCHHHH
Confidence 356677766655
No 61
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=56.90 E-value=3.5 Score=32.49 Aligned_cols=17 Identities=18% Similarity=0.426 Sum_probs=14.2
Q ss_pred cEEEEEecccCCCcccc
Q psy7490 170 RLFFLQCETCGSRCSVA 186 (193)
Q Consensus 170 rl~~~~c~~Cga~~~v~ 186 (193)
+.-|.+|..||+..|+.
T Consensus 112 ~~~ffHC~~C~~C~s~~ 128 (143)
T 2dkt_A 112 KEDFFHCLKCNLCLTTN 128 (143)
T ss_dssp GGGEEEETTTTEEEEGG
T ss_pred CcCcEECCcCCeeeccc
Confidence 45689999999998875
No 62
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=56.33 E-value=2.7 Score=29.75 Aligned_cols=11 Identities=27% Similarity=0.794 Sum_probs=5.2
Q ss_pred ecccccccccc
Q psy7490 146 FLQCETCGSRC 156 (193)
Q Consensus 146 ~l~C~aCGa~~ 156 (193)
.+.|+.|++..
T Consensus 37 ~I~CnDC~~~s 47 (79)
T 2k2d_A 37 DILCNDCNGRS 47 (79)
T ss_dssp EEEESSSCCEE
T ss_pred EEECCCCCCCc
Confidence 34455555443
No 63
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=56.00 E-value=3.5 Score=29.97 Aligned_cols=28 Identities=21% Similarity=0.604 Sum_probs=20.8
Q ss_pred cccCCCCCCcceeEecCceeeccccccccc
Q psy7490 126 VTCHTCRSPDTILQKDTRLFFLQCETCGSR 155 (193)
Q Consensus 126 VlC~~C~sPdT~L~k~~rl~~l~C~aCGa~ 155 (193)
|.|+.|.+.-|..-.-.- .+.|..||..
T Consensus 37 VkCp~C~~~~~VFShA~t--~V~C~~Cgtv 64 (86)
T 3iz6_X 37 VKCQGCFNITTVFSHSQT--VVVCPGCQTV 64 (86)
T ss_dssp EECTTTCCEEEEETTCSS--CCCCSSSCCC
T ss_pred EECCCCCCeeEEEecCCc--EEEccCCCCE
Confidence 899999987776655443 4788888865
No 64
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=55.96 E-value=5.3 Score=29.65 Aligned_cols=34 Identities=21% Similarity=0.329 Sum_probs=22.9
Q ss_pred cccCCCCCCcceeEe-cCceeeccccccccccccc
Q psy7490 126 VTCHTCRSPDTILQK-DTRLFFLQCETCGSRCSVA 159 (193)
Q Consensus 126 VlC~~C~sPdT~L~k-~~rl~~l~C~aCGa~~~V~ 159 (193)
-.||.|+|.=..-.. +++...+.|..||...++.
T Consensus 5 ~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~~~~ 39 (113)
T 3h0g_I 5 QYCIECNNMLYPREDKVDRVLRLACRNCDYSEIAA 39 (113)
T ss_dssp CCCSSSCCCCEECCCTTTCCCCEECSSSCCEECCS
T ss_pred eeCcCCCCEeeEcccCCCCeeEEECCCCCCeEEcC
Confidence 359999997322221 1345578899999987764
No 65
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=55.70 E-value=5.8 Score=28.50 Aligned_cols=37 Identities=14% Similarity=0.329 Sum_probs=28.9
Q ss_pred ecccccccccccccccccceeeeccEEEEEecccCCCccc
Q psy7490 146 FLQCETCGSRCSVASIKSGFQKDTRLFFLQCETCGSRCSV 185 (193)
Q Consensus 146 ~l~C~aCGa~~~V~~~k~~~~~~~rl~~~~c~~Cga~~~v 185 (193)
...|.-|++..+|.-. ++....+-.+.|..||.++..
T Consensus 23 ~F~CPfCnh~~sV~vk---idk~~~~g~l~C~~Cg~~~~~ 59 (85)
T 1wii_A 23 QFTCPFCNHEKSCDVK---MDRARNTGVISCTVCLEEFQT 59 (85)
T ss_dssp CCCCTTTCCSSCEEEE---EETTTTEEEEEESSSCCEEEE
T ss_pred eEcCCCCCCCCeEEEE---EEccCCEEEEEcccCCCeEEe
Confidence 5789999999876532 234567899999999998754
No 66
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=55.10 E-value=13 Score=27.21 Aligned_cols=40 Identities=23% Similarity=0.569 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhhhccccCCCCCCcceeEe-cCceeeccccccccc
Q psy7490 111 QKQIENVLRRYIKEYVTCHTCRSPDTILQK-DTRLFFLQCETCGSR 155 (193)
Q Consensus 111 ~~~iq~~L~~yI~~YVlC~~C~sPdT~L~k-~~rl~~l~C~aCGa~ 155 (193)
.+.+.++-..=-.+| .||.|+... +.+ .-++| +|..||..
T Consensus 23 RK~vkkie~~q~~ky-~CpfCgk~~--vkR~a~GIW--~C~~Cg~~ 63 (92)
T 3iz5_m 23 RKQIKKMEVSQHSKY-FCEFCGKFA--VKRKAVGIW--GCKDCGKV 63 (92)
T ss_dssp HHHHHHHHHHHHSCB-CCTTTCSSC--BEEEETTEE--ECSSSCCE
T ss_pred HHHHHHHHHHHhccc-cCcccCCCe--eEecCcceE--EcCCCCCE
Confidence 344555444444566 899999873 444 34564 79999765
No 67
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=54.91 E-value=7.2 Score=27.80 Aligned_cols=27 Identities=22% Similarity=0.610 Sum_probs=17.9
Q ss_pred ccCCCCCCcceeEecCceeecccccccccc
Q psy7490 127 TCHTCRSPDTILQKDTRLFFLQCETCGSRC 156 (193)
Q Consensus 127 lC~~C~sPdT~L~k~~rl~~l~C~aCGa~~ 156 (193)
.||.|+.+ .......+ ..+|..||..-
T Consensus 29 ~Cp~CG~~-~v~r~atG--iW~C~~Cg~~~ 55 (83)
T 1vq8_Z 29 ACPNCGED-RVDRQGTG--IWQCSYCDYKF 55 (83)
T ss_dssp ECSSSCCE-EEEEEETT--EEEETTTCCEE
T ss_pred cCCCCCCc-ceeccCCC--eEECCCCCCEe
Confidence 89999973 22222334 46899999864
No 68
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.95 E-value=26 Score=23.27 Aligned_cols=62 Identities=15% Similarity=0.316 Sum_probs=32.0
Q ss_pred Hhhhc-cccCCCCCCcc--eeEecCceeecccccccccccccccccceeeeccEEEEEecccCCCcc
Q psy7490 121 YIKEY-VTCHTCRSPDT--ILQKDTRLFFLQCETCGSRCSVASIKSGFQKDTRLFFLQCETCGSRCS 184 (193)
Q Consensus 121 yI~~Y-VlC~~C~sPdT--~L~k~~rl~~l~C~aCGa~~~V~~~k~~~~~~~rl~~~~c~~Cga~~~ 184 (193)
|.+.| ..|..|+.|=+ .+.-.++.|...|=.|-.-...-....-|....+. +.|..|..+-+
T Consensus 10 y~~~~~~~C~~C~~~I~~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~--~~C~~C~~~~~ 74 (81)
T 1v6g_A 10 YQRLYGTRCFSCDQFIEGEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKE--CMCQKCSLPVS 74 (81)
T ss_dssp GGGSCCCBCTTTCCBCCSCCEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTE--EEEHHHHSCCS
T ss_pred HHhHhCCcCccccCEeccceEEECCceeCccCCccccCCCCCCCCCEEEeCCCC--EEChhhhcccC
Confidence 44555 58999998543 34446777765555554332111112233334432 23777765443
No 69
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=51.95 E-value=5.3 Score=26.19 Aligned_cols=33 Identities=18% Similarity=0.395 Sum_probs=21.7
Q ss_pred HhhhccccCCCCCCcceeEecCceeeccccccccccccccc
Q psy7490 121 YIKEYVTCHTCRSPDTILQKDTRLFFLQCETCGSRCSVASI 161 (193)
Q Consensus 121 yI~~YVlC~~C~sPdT~L~k~~rl~~l~C~aCGa~~~V~~~ 161 (193)
.....-+|+.|++. +..-...|..||+. .+.+-
T Consensus 10 r~~~k~iCpkC~a~-------~~~gaw~CrKCG~~-~lr~k 42 (51)
T 3j21_g 10 RIFKKYVCLRCGAT-------NPWGAKKCRKCGYK-RLRPK 42 (51)
T ss_dssp HSSSEEECTTTCCE-------ECTTCSSCSSSSSC-CCEEE
T ss_pred HHhCCccCCCCCCc-------CCCCceecCCCCCc-ccccc
Confidence 34455689999986 23334688899987 44443
No 70
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=51.77 E-value=8 Score=31.67 Aligned_cols=30 Identities=20% Similarity=0.424 Sum_probs=21.2
Q ss_pred ccccCCCCCCcceeE-ecCceeeccccccccccc
Q psy7490 125 YVTCHTCRSPDTILQ-KDTRLFFLQCETCGSRCS 157 (193)
Q Consensus 125 YVlC~~C~sPdT~L~-k~~rl~~l~C~aCGa~~~ 157 (193)
...||.|++-|. +. -+++ ...|..||+..+
T Consensus 14 ~~~CP~Cg~~d~-~~~~~dg--~~~C~~Cg~~~~ 44 (255)
T 1nui_A 14 HIPCDNCGSSDG-NSLFSDG--HTFCYVCEKWTA 44 (255)
T ss_dssp EECCSSSCCSSC-EEEETTS--CEEETTTCCEEC
T ss_pred CCcCCCCCCCCC-ceEeCCC--CeecccCCCcCC
Confidence 568999998775 33 2334 379999998643
No 71
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=51.76 E-value=8.1 Score=28.53 Aligned_cols=59 Identities=19% Similarity=0.242 Sum_probs=28.9
Q ss_pred CCChHHHHHHHHHhhcCcee-ecCCCeEEEEeeccHHHHHHHHHHHhhhccccCCCCCCcceeEecCceeec-ccccccc
Q psy7490 77 HRLPKHLLDFLLAELGTSGS-VDGNSQLIIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLFFL-QCETCGS 154 (193)
Q Consensus 77 ~R~p~hv~ky~~~ELgt~g~-id~~~~lii~G~~~~~~iq~~L~~yI~~YVlC~~C~sPdT~L~k~~rl~~l-~C~aCGa 154 (193)
.-.|+.+...| ..+ +.|+ +=++-+|.|.-. .--..|..|+..=+. + . ... .|..||+
T Consensus 40 ~v~~e~l~f~f-~~~-~~gt~~~e~a~L~i~~~--------------p~~~~C~~CG~~~e~---~-~-~~~~~CP~Cgs 98 (119)
T 2kdx_A 40 AMDKSLFVSAF-ETF-REESLVCKDAILDIVDE--------------KVELECKDCSHVFKP---N-A-LDYGVCEKCHS 98 (119)
T ss_dssp CCCHHHHHHHH-HHH-GGGCTTTSSCCEEEEEE--------------CCEEECSSSSCEECS---C-C-STTCCCSSSSS
T ss_pred cccHHHHHHHH-HHH-HhCChhhcCcEEEEEec--------------cceEEcCCCCCEEeC---C-C-CCCCcCccccC
Confidence 34555554444 434 4555 444556666421 224467777642211 1 1 234 6777777
Q ss_pred cc
Q psy7490 155 RC 156 (193)
Q Consensus 155 ~~ 156 (193)
..
T Consensus 99 ~~ 100 (119)
T 2kdx_A 99 KN 100 (119)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 72
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=51.72 E-value=9.8 Score=32.58 Aligned_cols=58 Identities=16% Similarity=0.337 Sum_probs=40.2
Q ss_pred eeccHHHHHHHH-HHHhhhccccCCCCC-CcceeEecCceeecccccccccccccccccc
Q psy7490 107 GRFQQKQIENVL-RRYIKEYVTCHTCRS-PDTILQKDTRLFFLQCETCGSRCSVASIKSG 164 (193)
Q Consensus 107 G~~~~~~iq~~L-~~yI~~YVlC~~C~s-PdT~L~k~~rl~~l~C~aCGa~~~V~~~k~~ 164 (193)
|-.+.+++..+| +.++.+-..||.|++ |=..+.....+-...|..|+..--+++.+..
T Consensus 15 ~YkS~SQ~aRVLTE~Wv~~n~yCPnCG~~~l~~f~nN~PVaDF~C~~C~EeyELKSk~~~ 74 (257)
T 4esj_A 15 TYKSNSQKARILTEDWVYRQSYCPNCGNNPLNHFENNRPVADFYCNHCSEEFELKSKKGN 74 (257)
T ss_dssp HTTTCTTHHHHHHHHHHHHHCCCTTTCCSSCEEC----CCCEEECTTTCCEEEEEEEESS
T ss_pred hccChhheehhhhHHHHHHCCcCCCCCChhhhhccCCCcccccccCCcchhheeccccCc
Confidence 334455555555 689999999999999 4456666677878899999998877766533
No 73
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=51.55 E-value=4.1 Score=31.45 Aligned_cols=17 Identities=24% Similarity=0.624 Sum_probs=12.6
Q ss_pred ecCceeecccccccccc
Q psy7490 140 KDTRLFFLQCETCGSRC 156 (193)
Q Consensus 140 k~~rl~~l~C~aCGa~~ 156 (193)
++++|...+|.+||...
T Consensus 41 ~~grL~~~rC~~CG~~~ 57 (145)
T 3irb_A 41 KQNKIIGSKCSKCGRIF 57 (145)
T ss_dssp HTTCCEEEECTTTCCEE
T ss_pred HcCeEEEEEeCCCCcEE
Confidence 46778888888888754
No 74
>3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 4fip_D 4fjc_D 4fk5_E 3m99_D
Probab=49.89 E-value=4.7 Score=29.83 Aligned_cols=30 Identities=27% Similarity=0.624 Sum_probs=23.0
Q ss_pred CCcceeEe---cCceeecccccccccccccccc
Q psy7490 133 SPDTILQK---DTRLFFLQCETCGSRCSVASIK 162 (193)
Q Consensus 133 sPdT~L~k---~~rl~~l~C~aCGa~~~V~~~k 162 (193)
+|+|.|+. +..+-|..|++||.+=.+.+|-
T Consensus 59 n~nt~ii~~~Ld~~~~YRvCn~CGkPI~l~AIv 91 (96)
T 3mhs_E 59 NPNAQLIEDPLDKPIQYRVCEKCGKPLALTAIV 91 (96)
T ss_dssp CTTCCCCSSTTSSSCCCEEETTTCCEECGGGTT
T ss_pred CCcchhhcccCCCcccchhhhccCCceeHHHHH
Confidence 68888876 3457899999999987776653
No 75
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=49.17 E-value=8.9 Score=28.75 Aligned_cols=34 Identities=18% Similarity=0.409 Sum_probs=23.1
Q ss_pred cccCCCCCCcceeE-ecCceeeccccccccccccc
Q psy7490 126 VTCHTCRSPDTILQ-KDTRLFFLQCETCGSRCSVA 159 (193)
Q Consensus 126 VlC~~C~sPdT~L~-k~~rl~~l~C~aCGa~~~V~ 159 (193)
.-||.|+|.=..-. ++.+...+.|..||...++.
T Consensus 5 ~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~~~ 39 (122)
T 1twf_I 5 RFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAG 39 (122)
T ss_dssp CBCSSSCCBCEEEEETTTTEEEEECSSSSCEEECS
T ss_pred CcccccCccCcccccCcCCCCEEECCcCCCeeecC
Confidence 46999998433222 22555678999999977653
No 76
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=48.10 E-value=16 Score=25.14 Aligned_cols=27 Identities=11% Similarity=0.150 Sum_probs=25.1
Q ss_pred ccHHHHHHcCCChHHHHHHHHHhhcCc
Q psy7490 68 NFTEICKTLHRLPKHLLDFLLAELGTS 94 (193)
Q Consensus 68 Nf~dIak~L~R~p~hv~ky~~~ELgt~ 94 (193)
++.++|+.++-++.++.+.|..++|.+
T Consensus 21 ~~~~lA~~~~~S~~~l~r~fk~~~g~s 47 (103)
T 3lsg_A 21 TLSVLSEKLDLSSGYLSIMFKKNFGIP 47 (103)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHSSC
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHCcC
Confidence 468999999999999999999999975
No 77
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=47.62 E-value=3.9 Score=38.68 Aligned_cols=63 Identities=21% Similarity=0.311 Sum_probs=0.0
Q ss_pred hhccccCCCCCCccee--EecCceeecccccccccccccccccceeeecc---------------------------EEE
Q psy7490 123 KEYVTCHTCRSPDTIL--QKDTRLFFLQCETCGSRCSVASIKSGFQKDTR---------------------------LFF 173 (193)
Q Consensus 123 ~~YVlC~~C~sPdT~L--~k~~rl~~l~C~aCGa~~~V~~~k~~~~~~~r---------------------------l~~ 173 (193)
...-.|+.|.--+..- ......-.-.|.+||-+.+...++..+.+... =..
T Consensus 115 ~~tWvC~ICsfsN~~~~~f~~~~~~~p~C~~CGi~p~~~~~k~~i~~~~~~~~~~~~~~~~~~~~~~~CP~CTF~NHPsl 194 (566)
T 1w7p_D 115 VSTWVCPICMVSNETQGEFTKDTLPTPICINCGVPADYELTKSSINCSNAIDPNANPQNQFGVNSENICPACTFANHPQI 194 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccceeccccccCCCCCCCCCcccCCCCcccccCCCCchhhhhhhhhccccCCCcccCccccccccCCCCCcccccCChhh
Confidence 3456899997332211 11112445789999999888777665544221 145
Q ss_pred EEecccCCCccc
Q psy7490 174 LQCETCGSRCSV 185 (193)
Q Consensus 174 ~~c~~Cga~~~v 185 (193)
..|+-||++-+=
T Consensus 195 ~~CEiCg~~L~~ 206 (566)
T 1w7p_D 195 GNCEICGHRLPN 206 (566)
T ss_dssp ------------
T ss_pred hcccccCCcCCC
Confidence 679999987643
No 78
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.85 E-value=17 Score=25.97 Aligned_cols=35 Identities=17% Similarity=0.361 Sum_probs=21.2
Q ss_pred hhhccccCCCCCCcceeEecCceeecccccccccccccc
Q psy7490 122 IKEYVTCHTCRSPDTILQKDTRLFFLQCETCGSRCSVAS 160 (193)
Q Consensus 122 I~~YVlC~~C~sPdT~L~k~~rl~~l~C~aCGa~~~V~~ 160 (193)
+...+.|+.|+..-.. .+.....|..|+-...+..
T Consensus 25 ~~~~~~C~~C~G~G~~----~g~~~~~C~~C~G~G~~~~ 59 (104)
T 2ctt_A 25 VNIMDTCERCNGKGNE----PGTKVQHCHYCGGSGMETI 59 (104)
T ss_dssp SSCCEECSSSSSSSSC----TTCCCEECSSSSSSCEEEE
T ss_pred eeeeeECCCCcCCccC----CCCCCccCCCCCCCEEEEE
Confidence 4567889998864431 1222456888877765543
No 79
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=45.88 E-value=16 Score=25.41 Aligned_cols=27 Identities=7% Similarity=0.069 Sum_probs=25.1
Q ss_pred ccHHHHHHcCCChHHHHHHHHHhhcCc
Q psy7490 68 NFTEICKTLHRLPKHLLDFLLAELGTS 94 (193)
Q Consensus 68 Nf~dIak~L~R~p~hv~ky~~~ELgt~ 94 (193)
++.++|+.++-++.|+.+.|..++|.+
T Consensus 20 ~~~~lA~~~~~s~~~l~r~fk~~~G~s 46 (108)
T 3mn2_A 20 TIEKLTALTGISSRGIFKAFQRSRGYS 46 (108)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHTSSC
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHhCcC
Confidence 468999999999999999999999985
No 80
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=45.19 E-value=19 Score=25.08 Aligned_cols=27 Identities=19% Similarity=0.385 Sum_probs=25.2
Q ss_pred ccHHHHHHcCCChHHHHHHHHHhhcCc
Q psy7490 68 NFTEICKTLHRLPKHLLDFLLAELGTS 94 (193)
Q Consensus 68 Nf~dIak~L~R~p~hv~ky~~~ELgt~ 94 (193)
++.++|+.++-++.|+.+.|..++|.+
T Consensus 22 ~~~~lA~~~~~S~~~l~r~fk~~~G~s 48 (107)
T 2k9s_A 22 DIASVAQHVCLSPSRLSHLFRQQLGIS 48 (107)
T ss_dssp CHHHHHHHTTSCHHHHHHHHHHHHSSC
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHCcC
Confidence 478999999999999999999999975
No 81
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=44.36 E-value=8.5 Score=28.62 Aligned_cols=32 Identities=19% Similarity=0.571 Sum_probs=21.6
Q ss_pred ccCCCCCCcceeEe----cCceeecccccccccccc
Q psy7490 127 TCHTCRSPDTILQK----DTRLFFLQCETCGSRCSV 158 (193)
Q Consensus 127 lC~~C~sPdT~L~k----~~rl~~l~C~aCGa~~~V 158 (193)
.|..|+...+..+- ++++.+++|..|...--+
T Consensus 15 TC~~C~tRs~k~iSk~aY~~GvViv~C~gC~n~HlI 50 (100)
T 2e2z_A 15 TCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVRHLI 50 (100)
T ss_dssp EETTTTEEEEEEEEHHHHHTSEEEEECTTTCCEEES
T ss_pred EccCCCCcchhhcCHHHhhCCEEEEEcCCCccceEe
Confidence 67777776666654 467777777777776433
No 82
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=42.63 E-value=7.4 Score=26.92 Aligned_cols=30 Identities=27% Similarity=0.605 Sum_probs=19.1
Q ss_pred ccCCCCCCcceeEecCceeecccccccccccccc
Q psy7490 127 TCHTCRSPDTILQKDTRLFFLQCETCGSRCSVAS 160 (193)
Q Consensus 127 lC~~C~sPdT~L~k~~rl~~l~C~aCGa~~~V~~ 160 (193)
+|+.|+..-... +. .-++|..||++--.+.
T Consensus 30 ~C~~CG~~~e~~--~~--d~irCp~CG~RILyK~ 59 (70)
T 1twf_L 30 ICAECSSKLSLS--RT--DAVRCKDCGHRILLKA 59 (70)
T ss_dssp ECSSSCCEECCC--TT--STTCCSSSCCCCCBCC
T ss_pred ECCCCCCcceeC--CC--CCccCCCCCceEeEec
Confidence 799999753322 22 2368999999654433
No 83
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=42.63 E-value=20 Score=24.93 Aligned_cols=27 Identities=15% Similarity=0.233 Sum_probs=25.2
Q ss_pred ccHHHHHHcCCChHHHHHHHHHhhcCc
Q psy7490 68 NFTEICKTLHRLPKHLLDFLLAELGTS 94 (193)
Q Consensus 68 Nf~dIak~L~R~p~hv~ky~~~ELgt~ 94 (193)
++.++|+.++-++.++.+.|..++|.+
T Consensus 23 ~~~~lA~~~~~S~~~l~r~fk~~~G~s 49 (108)
T 3oou_A 23 SLKTLGNDFHINAVYLGQLFQKEMGEH 49 (108)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHSSC
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHCcC
Confidence 578999999999999999999999975
No 84
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=42.13 E-value=5.5 Score=29.93 Aligned_cols=29 Identities=24% Similarity=0.501 Sum_probs=22.0
Q ss_pred cccCCCCCCcceeEecCceeecccccccc
Q psy7490 126 VTCHTCRSPDTILQKDTRLFFLQCETCGS 154 (193)
Q Consensus 126 VlC~~C~sPdT~L~k~~rl~~l~C~aCGa 154 (193)
-.|..|+..+|-+-+.+.--...|+|||-
T Consensus 6 ~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl 34 (115)
T 4hc9_A 6 RECVNCGATSTPLWRRDGTGHYLCNACGL 34 (115)
T ss_dssp CCCTTTCCSCCSSCEECTTSCEECHHHHH
T ss_pred CCCCCCCCccCCcceECCCCCCcCcchhh
Confidence 36999999999987743323468999984
No 85
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=41.51 E-value=21 Score=25.80 Aligned_cols=13 Identities=23% Similarity=0.480 Sum_probs=7.6
Q ss_pred EEEEEecccCCCc
Q psy7490 171 LFFLQCETCGSRC 183 (193)
Q Consensus 171 l~~~~c~~Cga~~ 183 (193)
+-...|..||...
T Consensus 34 v~~~~C~~CGE~~ 46 (133)
T 3o9x_A 34 IHGLYCVHCEESI 46 (133)
T ss_dssp EEEEEESSSSCEE
T ss_pred CceeECCCCCCEe
Confidence 4555666666543
No 86
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=41.24 E-value=7.5 Score=30.13 Aligned_cols=17 Identities=24% Similarity=0.624 Sum_probs=13.2
Q ss_pred ecCceeecccccccccc
Q psy7490 140 KDTRLFFLQCETCGSRC 156 (193)
Q Consensus 140 k~~rl~~l~C~aCGa~~ 156 (193)
+++++...+|.+||...
T Consensus 41 ~~g~L~~~rC~~CG~~~ 57 (145)
T 2gnr_A 41 KQNKIIGSKCSKCGRIF 57 (145)
T ss_dssp HTTCCEEEECTTTCCEE
T ss_pred hCCEEEEEEECCCCcEE
Confidence 46788888888888764
No 87
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=41.08 E-value=21 Score=25.12 Aligned_cols=27 Identities=19% Similarity=0.165 Sum_probs=25.2
Q ss_pred ccHHHHHHcCCChHHHHHHHHHhhcCc
Q psy7490 68 NFTEICKTLHRLPKHLLDFLLAELGTS 94 (193)
Q Consensus 68 Nf~dIak~L~R~p~hv~ky~~~ELgt~ 94 (193)
++.++|+.++-++.++.+.|..++|..
T Consensus 25 ~~~~lA~~~~~S~~~l~r~fk~~~G~s 51 (113)
T 3oio_A 25 STDDIAYYVGVSRRQLERLFKQYLGTV 51 (113)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHTSSC
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHCcC
Confidence 568999999999999999999999985
No 88
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=40.88 E-value=17 Score=30.44 Aligned_cols=40 Identities=18% Similarity=0.345 Sum_probs=29.8
Q ss_pred HHHHHHHHhhhccccCCCCCCcceeEecCceeecccccccccc
Q psy7490 114 IENVLRRYIKEYVTCHTCRSPDTILQKDTRLFFLQCETCGSRC 156 (193)
Q Consensus 114 iq~~L~~yI~~YVlC~~C~sPdT~L~k~~rl~~l~C~aCGa~~ 156 (193)
-...|..|-..+--|+.|++|-.. .+++ +-..|.+||...
T Consensus 96 ~a~~l~~w~~~~~fC~~CG~~~~~--~~~~-~~~~C~~C~~~~ 135 (269)
T 1vk6_A 96 RGVQLAEFYRSHKYCGYCGHEMYP--SKTE-WAMLCSHCRERY 135 (269)
T ss_dssp HHHHHHHHHHTTSBCTTTCCBEEE--CSSS-SCEEESSSSCEE
T ss_pred HHHHHHhhhhcCCccccCCCcCcc--CCCc-eeeeCCCCCCEe
Confidence 345677888899999999998544 2333 467899999854
No 89
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=40.00 E-value=25 Score=25.42 Aligned_cols=28 Identities=18% Similarity=0.186 Sum_probs=25.5
Q ss_pred eccHHHHHHcCCChHHHHHHHHHhhcCc
Q psy7490 67 ANFTEICKTLHRLPKHLLDFLLAELGTS 94 (193)
Q Consensus 67 ~Nf~dIak~L~R~p~hv~ky~~~ELgt~ 94 (193)
.++.++|+.++-++.|+.+.|..++|..
T Consensus 28 ~sl~~lA~~~~~S~~~l~r~fk~~~G~s 55 (129)
T 1bl0_A 28 LSLEKVSERSGYSKWHLQRMFKKETGHS 55 (129)
T ss_dssp CCCHHHHHHSSSCHHHHHHHHHHHHSSC
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHCcC
Confidence 3578999999999999999999999975
No 90
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=39.71 E-value=22 Score=25.84 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=25.7
Q ss_pred eccHHHHHHcCCChHHHHHHHHHhhcCc
Q psy7490 67 ANFTEICKTLHRLPKHLLDFLLAELGTS 94 (193)
Q Consensus 67 ~Nf~dIak~L~R~p~hv~ky~~~ELgt~ 94 (193)
.++.+||+.++-+|.|+.+.|..++|..
T Consensus 94 ~sl~~lA~~~g~S~~~f~r~Fk~~~G~t 121 (133)
T 1u8b_A 94 VTLEALADQVAMSPFHLHRLFKATTGMT 121 (133)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHTSSC
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHCcC
Confidence 4578999999999999999999999975
No 91
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=38.28 E-value=6.9 Score=29.39 Aligned_cols=30 Identities=23% Similarity=0.484 Sum_probs=21.7
Q ss_pred cccCCCCCCcceeEecCceeeccccccccc
Q psy7490 126 VTCHTCRSPDTILQKDTRLFFLQCETCGSR 155 (193)
Q Consensus 126 VlC~~C~sPdT~L~k~~rl~~l~C~aCGa~ 155 (193)
..|..|+..+|.+-+.+..-...|+|||-.
T Consensus 60 ~~C~~C~t~~tp~WRr~~~g~~lCNaCgl~ 89 (115)
T 4hc9_A 60 TSCANCQTTTTTLWRRNANGDPVCNACGLY 89 (115)
T ss_dssp CCCTTTCCSCCSSCEECTTSCEECHHHHHH
T ss_pred ccCCCcCCCCcceeEECCCCCCcchHHHHH
Confidence 589999999998876432223569999843
No 92
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=37.60 E-value=11 Score=30.95 Aligned_cols=44 Identities=23% Similarity=0.376 Sum_probs=21.9
Q ss_pred eecccccccccccccccccceeeeccEEEEEecccCCCcccccc
Q psy7490 145 FFLQCETCGSRCSVASIKSGFQKDTRLFFLQCETCGSRCSVASI 188 (193)
Q Consensus 145 ~~l~C~aCGa~~~V~~~k~~~~~~~rl~~~~c~~Cga~~~v~~~ 188 (193)
+.++|..||...+.+.+...-......=-+.|..|++.-|..+|
T Consensus 21 l~l~Cp~C~~~~~F~gv~~~~~~~~~~sg~~C~~C~~~~~~~~i 64 (206)
T 3flo_B 21 LELSCPSCDKRFPFGGIVSSNYYRVSYNGLQCKHCEQLFTPLQL 64 (206)
T ss_dssp EEEECTTTCCEEEECSSSCCSSEEEETTEEEETTTCCBCCHHHH
T ss_pred eEEECCCCCCccCCCCcccCCCcccccccccCCCCCCcCCHHHH
Confidence 35677777776655544211000011124567777776665444
No 93
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=37.46 E-value=30 Score=23.49 Aligned_cols=17 Identities=18% Similarity=0.239 Sum_probs=9.7
Q ss_pred eeccEEEEEecccCCCc
Q psy7490 167 KDTRLFFLQCETCGSRC 183 (193)
Q Consensus 167 ~~~rl~~~~c~~Cga~~ 183 (193)
....+=...|..||...
T Consensus 30 ~I~~Vp~~~C~~CGE~~ 46 (78)
T 3ga8_A 30 VLKGIHGLYCVHCEESI 46 (78)
T ss_dssp EEEEEEEEEETTTCCEE
T ss_pred EEcCceeEECCCCCCEE
Confidence 33444556677777643
No 94
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=37.21 E-value=16 Score=23.45 Aligned_cols=29 Identities=14% Similarity=0.479 Sum_probs=17.0
Q ss_pred ccCCCCCC----cceeEecCceee-----ccccccccc
Q psy7490 127 TCHTCRSP----DTILQKDTRLFF-----LQCETCGSR 155 (193)
Q Consensus 127 lC~~C~sP----dT~L~k~~rl~~-----l~C~aCGa~ 155 (193)
.|..|+.| +..+.-.++.|. .+|..|+.+
T Consensus 4 ~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~ 41 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKC 41 (65)
T ss_dssp ECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCB
T ss_pred CCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCc
Confidence 58888864 234444667776 455555543
No 95
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=36.41 E-value=29 Score=31.42 Aligned_cols=32 Identities=25% Similarity=0.749 Sum_probs=17.8
Q ss_pred cccCCCCCCcc-eeEe-c----Cc--eeeccccccccccc
Q psy7490 126 VTCHTCRSPDT-ILQK-D----TR--LFFLQCETCGSRCS 157 (193)
Q Consensus 126 VlC~~C~sPdT-~L~k-~----~r--l~~l~C~aCGa~~~ 157 (193)
..||.|+.+-+ .+.. + +. +....|..||.++.
T Consensus 221 s~Cp~C~~~~~t~~~~~~IP~F~eViims~~C~~CGyr~n 260 (404)
T 2qkd_A 221 TNCPECNAPAQTNMKLVQIPHFKEVIIMATNCENCGHRTN 260 (404)
T ss_dssp ECCTTTCCTTCEEEEEECCTTSCCEEEEEEECSSSCCEEE
T ss_pred ccCccCCCccEEEEEEEeCCCCCcEEEEEEECCCCCCccc
Confidence 46777776543 3321 1 22 34567777777763
No 96
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=35.38 E-value=12 Score=25.57 Aligned_cols=31 Identities=26% Similarity=0.604 Sum_probs=19.3
Q ss_pred ccCCCCCCcceeEecCceeeccccccccccccccc
Q psy7490 127 TCHTCRSPDTILQKDTRLFFLQCETCGSRCSVASI 161 (193)
Q Consensus 127 lC~~C~sPdT~L~k~~rl~~l~C~aCGa~~~V~~~ 161 (193)
+|..|+.... |. . ..-++|..||.+=-.+..
T Consensus 23 ~C~~Cg~~~~-l~-~--~~~iRC~~CG~RILyK~R 53 (63)
T 3h0g_L 23 LCADCGARNT-IQ-A--KEVIRCRECGHRVMYKMR 53 (63)
T ss_dssp BCSSSCCBCC-CC-S--SSCCCCSSSCCCCCBCCC
T ss_pred ECCCCCCeee-cC-C--CCceECCCCCcEEEEEec
Confidence 7888876554 22 1 234788888887544433
No 97
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=35.35 E-value=18 Score=24.41 Aligned_cols=9 Identities=33% Similarity=1.132 Sum_probs=4.9
Q ss_pred ccccccccc
Q psy7490 149 CETCGSRCS 157 (193)
Q Consensus 149 C~aCGa~~~ 157 (193)
|..||+...
T Consensus 21 CP~CG~~T~ 29 (60)
T 2apo_B 21 CPKCGEKTV 29 (60)
T ss_dssp CSSSCSBCB
T ss_pred CcCCCCcCC
Confidence 566665543
No 98
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=34.21 E-value=47 Score=24.84 Aligned_cols=54 Identities=9% Similarity=0.106 Sum_probs=35.5
Q ss_pred eccHHHHHHcCCChHHHHHHH--HHhhcCceeecCCCeEEEEeeccHHHHHHHHHH
Q psy7490 67 ANFTEICKTLHRLPKHLLDFL--LAELGTSGSVDGNSQLIIKGRFQQKQIENVLRR 120 (193)
Q Consensus 67 ~Nf~dIak~L~R~p~hv~ky~--~~ELgt~g~id~~~~lii~G~~~~~~iq~~L~~ 120 (193)
....+||+.++-+|.||.|-+ +.+.|.=.+.-|+|.+.+.-.-..=.+-++++.
T Consensus 31 ~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~rG~GGy~L~~~p~~Itl~dVi~a 86 (149)
T 1ylf_A 31 CTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGPGGAGLLKDLHEITLLDVYHA 86 (149)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC---CCEEESSCGGGCBHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEccCCCceEeCCChhhCcHHHHHHH
Confidence 457899999999999999987 455554333334667877665444445555554
No 99
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=34.18 E-value=25 Score=25.51 Aligned_cols=28 Identities=18% Similarity=0.665 Sum_probs=17.6
Q ss_pred ccCCCCCCcc----eeEecCceeecccccccc
Q psy7490 127 TCHTCRSPDT----ILQKDTRLFFLQCETCGS 154 (193)
Q Consensus 127 lC~~C~sPdT----~L~k~~rl~~l~C~aCGa 154 (193)
.|..|+.+=+ .+.-.++.|...|=.|-.
T Consensus 10 ~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~ 41 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMRVKDKVYHLECFKCAA 41 (123)
T ss_dssp CCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTT
T ss_pred cccCCCCeecCCceEEEECCcccccccCcccc
Confidence 5999998654 233357777666555543
No 100
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=33.91 E-value=5.6 Score=33.78 Aligned_cols=50 Identities=22% Similarity=0.472 Sum_probs=29.8
Q ss_pred CCCc-ceeEecCceeecccccccccccccccccceeeeccEEEEEecccCC
Q psy7490 132 RSPD-TILQKDTRLFFLQCETCGSRCSVASIKSGFQKDTRLFFLQCETCGS 181 (193)
Q Consensus 132 ~sPd-T~L~k~~rl~~l~C~aCGa~~~V~~~k~~~~~~~rl~~~~c~~Cga 181 (193)
++|+ -.+.-.+.+..++|..|+...+...+...+.....--.-+|..||.
T Consensus 121 G~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~P~C~~Cgg 171 (289)
T 1q1a_A 121 GVKDDLIIEAHGSFAHCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGE 171 (289)
T ss_dssp TCCGGGEEETTEEEEEEEETTTCCEECHHHHHHHHTCSSCCSCCBCTTTCC
T ss_pred CCCcccEEEecCCcCceEECCCCCCCcHHHHHHHHhhccCCCCccCCCCCC
Confidence 5553 4555688899999999988765543322111110001358999996
No 101
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.77 E-value=15 Score=24.26 Aligned_cols=54 Identities=24% Similarity=0.582 Sum_probs=27.9
Q ss_pred cccCCCCCCcc-----eeE-ecCceeecccccccccc-cccccccceeeeccEEEEEecccCCCc
Q psy7490 126 VTCHTCRSPDT-----ILQ-KDTRLFFLQCETCGSRC-SVASIKSGFQKDTRLFFLQCETCGSRC 183 (193)
Q Consensus 126 VlC~~C~sPdT-----~L~-k~~rl~~l~C~aCGa~~-~V~~~k~~~~~~~rl~~~~c~~Cga~~ 183 (193)
..|..|+.|=+ ..+ -.++.|...|=.|-.-. ++. ...|...... +-|..|-.+.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~--~~~f~~~~g~--~yC~~cy~~~ 66 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLV--GKGFLTQNKE--IFCQKCGSGM 66 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCS--SSCEEEETTE--EEETTTTCCC
T ss_pred CCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCC--CCceEeECCE--EECHHHhhhh
Confidence 47999998533 333 46777765544443222 121 2334443332 3477776554
No 102
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=33.56 E-value=22 Score=20.75 Aligned_cols=8 Identities=25% Similarity=0.895 Sum_probs=3.7
Q ss_pred ecccCCCc
Q psy7490 176 CETCGSRC 183 (193)
Q Consensus 176 c~~Cga~~ 183 (193)
|..||+.+
T Consensus 23 C~~C~~pk 30 (33)
T 2k1p_A 23 CNMCNTPK 30 (33)
T ss_dssp CSSSCCBT
T ss_pred ccccCCcC
Confidence 44444444
No 103
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=32.94 E-value=19 Score=27.58 Aligned_cols=35 Identities=17% Similarity=0.446 Sum_probs=23.1
Q ss_pred ccccCCCCCCcceeE-ecCceeeccccccccccccc
Q psy7490 125 YVTCHTCRSPDTILQ-KDTRLFFLQCETCGSRCSVA 159 (193)
Q Consensus 125 YVlC~~C~sPdT~L~-k~~rl~~l~C~aCGa~~~V~ 159 (193)
.-.||+|+|.=..-. ++++...+.|..||..-++.
T Consensus 24 ~~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~~~~ 59 (133)
T 3qt1_I 24 FRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAG 59 (133)
T ss_dssp CCBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBCCCS
T ss_pred CeeCCCCCCEeeECccCCCceeEEECCCCCCcEEcC
Confidence 456999998422111 22345578999999987653
No 104
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=32.85 E-value=30 Score=19.57 Aligned_cols=21 Identities=14% Similarity=0.317 Sum_probs=18.8
Q ss_pred ccHHHHHHcCCChHHHHHHHH
Q psy7490 68 NFTEICKTLHRLPKHLLDFLL 88 (193)
Q Consensus 68 Nf~dIak~L~R~p~hv~ky~~ 88 (193)
...+||+.|+.++..|.+|+.
T Consensus 23 s~~~IA~~lgis~~Tv~~~~~ 43 (51)
T 1tc3_C 23 SLHEMSRKISRSRHCIRVYLK 43 (51)
T ss_dssp CHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHh
Confidence 478999999999999999984
No 105
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=32.46 E-value=35 Score=23.76 Aligned_cols=45 Identities=27% Similarity=0.582 Sum_probs=25.4
Q ss_pred eeccHHHHHHHHHHHhhhccccCCCCCCcceeEe-cCceeecccccccccc
Q psy7490 107 GRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQK-DTRLFFLQCETCGSRC 156 (193)
Q Consensus 107 G~~~~~~iq~~L~~yI~~YVlC~~C~sPdT~L~k-~~rl~~l~C~aCGa~~ 156 (193)
|.--.+.+.++-..=-.+| .||.|+.. .+.+ .-++ -+|..||..-
T Consensus 10 G~slRK~vkkie~~q~~ky-~C~fCgk~--~vkR~a~GI--W~C~~C~~~~ 55 (73)
T 1ffk_W 10 GLKIRVRVRDVEIKHKKKY-KCPVCGFP--KLKRASTSI--WVCGHCGYKI 55 (73)
T ss_pred ChhHHHHHHHHHHhcccCc-cCCCCCCc--eeEEEEeEE--EECCCCCcEE
Confidence 3333444555433333445 79999864 4443 3444 5899998763
No 106
>1x3z_A Peptide: N-glycanase; hydrolase-hydrolase inhibitor complex; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A*
Probab=32.44 E-value=34 Score=30.27 Aligned_cols=47 Identities=15% Similarity=0.509 Sum_probs=28.6
Q ss_pred cHHHHHHHHHHHhhhc------cccCCCCCCcc--eeE--------e-----cCceeecccccccccc
Q psy7490 110 QQKQIENVLRRYIKEY------VTCHTCRSPDT--ILQ--------K-----DTRLFFLQCETCGSRC 156 (193)
Q Consensus 110 ~~~~iq~~L~~yI~~Y------VlC~~C~sPdT--~L~--------k-----~~rl~~l~C~aCGa~~ 156 (193)
...-|..+|+=|=.+| -.|+.|+++.+ ... . .+++..-+|..||+..
T Consensus 98 ~d~ll~~LL~WFk~~fF~wvn~p~C~~Cg~~~~~~~~~~g~~~p~~~E~~~ga~~vE~y~C~~C~~~~ 165 (335)
T 1x3z_A 98 TDYLVKELLRYFKQDFFKWCNKPDCNHCGQNTSENMTPLGSQGPNGEESKFNCGTVEIYKCNRCGNIT 165 (335)
T ss_dssp HHHHHHHHHHHHHHTTCEECSSCCCSSSCSSCCSSEEEEEEECCCSGGGSSSEEEEEEEEETTTCCEE
T ss_pred hHHHHHHHHHHHHhcCCEeeCCCCccccCCCccccccccCCCCCChhhhccCCceEEEeecCCCCccc
Confidence 3345778887776663 36999999863 331 0 1235556677777643
No 107
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=32.38 E-value=21 Score=25.30 Aligned_cols=38 Identities=29% Similarity=0.693 Sum_probs=23.5
Q ss_pred CCcceeEecCceeecccccccccccccccccceeeeccEEEEEecccCCC
Q psy7490 133 SPDTILQKDTRLFFLQCETCGSRCSVASIKSGFQKDTRLFFLQCETCGSR 182 (193)
Q Consensus 133 sPdT~L~k~~rl~~l~C~aCGa~~~V~~~k~~~~~~~rl~~~~c~~Cga~ 182 (193)
|+|=..++.-+.|.++|.||-...+ .+++.| |..||..
T Consensus 2 s~~G~~Ir~~k~~iLrC~aCf~~t~---------~~~k~F---Cp~CGn~ 39 (79)
T 2con_A 2 SSGSSGVREARSYILRCHGCFKTTS---------DMNRVF---CGHCGNK 39 (79)
T ss_dssp CCCCCCCCCCCCEEEECSSSCCEES---------CSSCCS---CSSSCCS
T ss_pred CCCceEeeeeeeeeeEecccceECC---------Cccccc---ccccCcc
Confidence 4444556666778888888877641 233443 7777764
No 108
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=32.05 E-value=33 Score=22.86 Aligned_cols=32 Identities=19% Similarity=0.350 Sum_probs=17.5
Q ss_pred hhccccCCCCCCcceeEecCceeecccccccccccc
Q psy7490 123 KEYVTCHTCRSPDTILQKDTRLFFLQCETCGSRCSV 158 (193)
Q Consensus 123 ~~YVlC~~C~sPdT~L~k~~rl~~l~C~aCGa~~~V 158 (193)
...+.|+.|+.-...- ......|..|+-...+
T Consensus 9 ~~~~~C~~C~G~G~~~----~~~~~~C~~C~G~G~~ 40 (79)
T 1exk_A 9 PTLEECDVCHGSGAKP----GTQPQTCPTCHGSGQV 40 (79)
T ss_dssp CCEEECGGGTTTSBCS----SSCCEECTTTTTSSEE
T ss_pred ccceECCCCcccccCC----CccCCCCCCCcCeEEE
Confidence 4567777777655321 1123457777666543
No 109
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=31.97 E-value=19 Score=25.16 Aligned_cols=29 Identities=17% Similarity=0.646 Sum_probs=19.0
Q ss_pred hhccccCCCCCCcceeEec-Cceeecccccccccc
Q psy7490 123 KEYVTCHTCRSPDTILQKD-TRLFFLQCETCGSRC 156 (193)
Q Consensus 123 ~~YVlC~~C~sPdT~L~k~-~rl~~l~C~aCGa~~ 156 (193)
.+| .||.|+... +.+. -++ -+|..||..-
T Consensus 25 ~ky-~C~fCgk~~--vkR~a~GI--W~C~~C~~~~ 54 (72)
T 3jyw_9 25 ARY-DCSFCGKKT--VKRGAAGI--WTCSCCKKTV 54 (72)
T ss_dssp SCB-CCSSCCSSC--BSBCSSSC--BCCSSSCCCC
T ss_pred cCc-cCCCCCCce--eEecCCCe--EECCCCCCEE
Confidence 455 799999763 4332 344 4899998753
No 110
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.83 E-value=17 Score=23.48 Aligned_cols=28 Identities=14% Similarity=0.426 Sum_probs=16.9
Q ss_pred cccCCCCCCcc----eeEecCceeeccccccc
Q psy7490 126 VTCHTCRSPDT----ILQKDTRLFFLQCETCG 153 (193)
Q Consensus 126 VlC~~C~sPdT----~L~k~~rl~~l~C~aCG 153 (193)
..|..|+.|=+ .+.-.++.|...|=.|.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~ 37 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEYKGSSWHETCFICH 37 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEETTEEEETTTTCCS
T ss_pred CCCccCCCcccCCceEEEECcCeecccCCccc
Confidence 36888887443 34446777766555543
No 111
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=30.83 E-value=21 Score=27.35 Aligned_cols=30 Identities=17% Similarity=0.350 Sum_probs=21.8
Q ss_pred ccccCCCCCCcceeEecC-ceeecccccccc
Q psy7490 125 YVTCHTCRSPDTILQKDT-RLFFLQCETCGS 154 (193)
Q Consensus 125 YVlC~~C~sPdT~L~k~~-rl~~l~C~aCGa 154 (193)
|--||.|+.+.+...-++ ......|..||.
T Consensus 3 ~~~C~~CG~~~~~~~~~G~~~~~~~~~~~~~ 33 (189)
T 3cng_A 3 MKFCSQCGGEVILRIPEGDTLPRYICPKCHT 33 (189)
T ss_dssp CCBCTTTCCBCEEECCTTCSSCEEEETTTTE
T ss_pred cccCchhCCccccccccCCCCcceECCCCCC
Confidence 557999999998655443 234567999994
No 112
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=30.81 E-value=35 Score=26.02 Aligned_cols=7 Identities=29% Similarity=1.070 Sum_probs=3.4
Q ss_pred ccCCCCC
Q psy7490 127 TCHTCRS 133 (193)
Q Consensus 127 lC~~C~s 133 (193)
.|..|+.
T Consensus 35 ~C~~C~~ 41 (169)
T 2rgt_A 35 KCSDCHV 41 (169)
T ss_dssp BCTTTCC
T ss_pred ccCCCCC
Confidence 4555543
No 113
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=30.73 E-value=22 Score=20.14 Aligned_cols=8 Identities=38% Similarity=0.883 Sum_probs=4.1
Q ss_pred ecccCCCc
Q psy7490 176 CETCGSRC 183 (193)
Q Consensus 176 c~~Cga~~ 183 (193)
|+.||+.|
T Consensus 23 Ce~C~~~r 30 (31)
T 1nj3_A 23 CEMCSLPR 30 (31)
T ss_dssp CSSSCCCC
T ss_pred cCCcCCCC
Confidence 55555544
No 114
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.53 E-value=48 Score=21.18 Aligned_cols=28 Identities=18% Similarity=0.452 Sum_probs=16.6
Q ss_pred cccCCCCCCcc----eeEecCceeeccccccc
Q psy7490 126 VTCHTCRSPDT----ILQKDTRLFFLQCETCG 153 (193)
Q Consensus 126 VlC~~C~sPdT----~L~k~~rl~~l~C~aCG 153 (193)
..|..|+.|=. .+.-.++.|...|=.|-
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~ 37 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKLEYGGQTWHEHCFLCS 37 (72)
T ss_dssp CBCSSSCCBCCSSSCEECSTTCCEETTTCBCT
T ss_pred CCCccCCCccccCccEEEECccccCcccCeEC
Confidence 47889987533 33335777765554443
No 115
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=30.49 E-value=39 Score=25.20 Aligned_cols=31 Identities=23% Similarity=0.613 Sum_probs=15.6
Q ss_pred ccCCCCC---Ccce--eEecCc---eeeccccccccccc
Q psy7490 127 TCHTCRS---PDTI--LQKDTR---LFFLQCETCGSRCS 157 (193)
Q Consensus 127 lC~~C~s---PdT~--L~k~~r---l~~l~C~aCGa~~~ 157 (193)
+|..|++ |.-. +..+++ .....|..||...-
T Consensus 67 ~Ck~C~s~LiPG~t~~vri~~~~~~~vv~tCl~Cg~~kR 105 (120)
T 1x0t_A 67 YCKRCHTFLIPGVNARVRLRTKRMPHVVITCLECGYIMR 105 (120)
T ss_dssp BCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTCCEEE
T ss_pred hccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEE
Confidence 6888877 4421 111222 34456666665543
No 116
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=30.09 E-value=26 Score=25.55 Aligned_cols=40 Identities=15% Similarity=0.548 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhhhccccCCCCCCcceeEe-cCceeeccccccccc
Q psy7490 111 QKQIENVLRRYIKEYVTCHTCRSPDTILQK-DTRLFFLQCETCGSR 155 (193)
Q Consensus 111 ~~~iq~~L~~yI~~YVlC~~C~sPdT~L~k-~~rl~~l~C~aCGa~ 155 (193)
.+.+.++-..=-.+| .||.|+.+ .+.+ --++| +|..||..
T Consensus 23 RK~vkkie~~q~~ky-~CpfCgk~--~vkR~a~GIW--~C~~C~~~ 63 (92)
T 3izc_m 23 RRQVKKLEIQQHARY-DCSFCGKK--TVKRGAAGIW--TCSCCKKT 63 (92)
T ss_dssp HHHHHHHHHHHHSCC-CCSSSCSS--CCEEEETTEE--ECTTTCCE
T ss_pred HHHHHHHHHHHhcCC-cCCCCCCc--eeeecccceE--EcCCCCCE
Confidence 344444444444566 79999976 3444 34564 79999764
No 117
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.92 E-value=65 Score=21.14 Aligned_cols=28 Identities=18% Similarity=0.455 Sum_probs=16.2
Q ss_pred cccCCCCCCcc----eeEecCceeeccccccc
Q psy7490 126 VTCHTCRSPDT----ILQKDTRLFFLQCETCG 153 (193)
Q Consensus 126 VlC~~C~sPdT----~L~k~~rl~~l~C~aCG 153 (193)
..|..|+.|=+ .+.-.++.|...|=.|.
T Consensus 16 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~ 47 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCS 47 (82)
T ss_dssp CBCSSSCCBCCSSSCEEECSSCEEETTTCCCS
T ss_pred CcCccCCcccccCceEEEECccccccccCchh
Confidence 37888887543 23345677765554443
No 118
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=29.84 E-value=44 Score=22.61 Aligned_cols=27 Identities=19% Similarity=0.398 Sum_probs=21.2
Q ss_pred ecCCCeEE-EEeeccHHHHHHHHHHHhh
Q psy7490 97 VDGNSQLI-IKGRFQQKQIENVLRRYIK 123 (193)
Q Consensus 97 id~~~~li-i~G~~~~~~iq~~L~~yI~ 123 (193)
+|.+|+++ +.|..+.++|.+.|++.++
T Consensus 108 id~~g~i~~~~g~~~~~~l~~~l~~~l~ 135 (136)
T 1zzo_A 108 VDPHGNVDVVRGRMSQDELTRRVTALTS 135 (136)
T ss_dssp ECTTCCEEEEESCCCHHHHHHHHHHHC-
T ss_pred ECCCCCEEEEecCCCHHHHHHHHHHHhc
Confidence 67777764 8888999999999988764
No 119
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=29.73 E-value=85 Score=20.32 Aligned_cols=26 Identities=15% Similarity=0.456 Sum_probs=15.7
Q ss_pred ccCCCCCC---cceeEecCceeecccccc
Q psy7490 127 TCHTCRSP---DTILQKDTRLFFLQCETC 152 (193)
Q Consensus 127 lC~~C~sP---dT~L~k~~rl~~l~C~aC 152 (193)
.|..|+.| +..+.-.++.|...|=.|
T Consensus 2 ~C~~C~~~I~~~~~v~a~~~~~H~~CF~C 30 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTSLGKDWHRPCLKC 30 (76)
T ss_dssp BCTTTSSBCCGGGEEEETTEEEETTTCBC
T ss_pred cCCCCCCEEECceEEEECCccccCCCCCc
Confidence 58888875 334445677776544444
No 120
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=29.45 E-value=9.1 Score=27.14 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=17.0
Q ss_pred cccccccccccccccccceeeeccEEEEEecccCCCccc
Q psy7490 147 LQCETCGSRCSVASIKSGFQKDTRLFFLQCETCGSRCSV 185 (193)
Q Consensus 147 l~C~aCGa~~~V~~~k~~~~~~~rl~~~~c~~Cga~~~v 185 (193)
-.|..|...++|.+-. ...+ .-.-.|.+||.+.+.
T Consensus 18 WVCpICsfsN~v~s~f---dp~~-~~lPpC~aCGIkP~~ 52 (76)
T 2j9u_B 18 WVCPICMVSNETQGEF---TKDT-LPTPICINCGVPADY 52 (76)
T ss_dssp EECTTTCCEEEESSCC---CTTC-SSCCBCTTTCCBCCH
T ss_pred eECccccccCcCcccc---CCCC-CCCCcccccCccCCH
Confidence 3456666555554331 1111 444556666666553
No 121
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=29.25 E-value=8.8 Score=34.04 Aligned_cols=51 Identities=22% Similarity=0.466 Sum_probs=30.2
Q ss_pred CCCCc-ceeEecCceeecccccccccccccccccceeeeccEEEEEecccCC
Q psy7490 131 CRSPD-TILQKDTRLFFLQCETCGSRCSVASIKSGFQKDTRLFFLQCETCGS 181 (193)
Q Consensus 131 C~sPd-T~L~k~~rl~~l~C~aCGa~~~V~~~k~~~~~~~rl~~~~c~~Cga 181 (193)
-++|+ ..+.-.+.+..++|..|+...+...+...+.....--.-+|..||.
T Consensus 128 AG~~~~~VielHGsl~~~~C~~C~~~~~~~~~~~~~~~~~~~~~P~Cp~Cgg 179 (361)
T 1q14_A 128 AGVKDDLIIEAHGSFAHCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGE 179 (361)
T ss_dssp TTCCGGGEEETTEEEEEEEETTTCCEECTHHHHHHTTSSSCSCCCBCTTTCC
T ss_pred cCCCcceEEeccccccccCcCCCCccCcHHHHHHHHhhcccCCCCCCcCCCC
Confidence 35553 4555688899999999998665443322111110001358999996
No 122
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=29.21 E-value=11 Score=32.24 Aligned_cols=47 Identities=15% Similarity=0.381 Sum_probs=27.7
Q ss_pred CCCcc-eeEecCceeecccccccccccccccccceeeeccEEEEEecccCC
Q psy7490 132 RSPDT-ILQKDTRLFFLQCETCGSRCSVASIKSGFQKDTRLFFLQCETCGS 181 (193)
Q Consensus 132 ~sPdT-~L~k~~rl~~l~C~aCGa~~~V~~~k~~~~~~~rl~~~~c~~Cga 181 (193)
+.|.. .+.-.+.+...+|..|+...+...++..+... -.-+|..||.
T Consensus 124 G~~~~~VielHGs~~~~~C~~C~~~~~~~~~~~~i~~~---~~P~C~~Cgg 171 (285)
T 3glr_A 124 GIPASKLVEAHGTFASATCTVCQRPFPGEDIRADVMAD---RVPRCPVCTG 171 (285)
T ss_dssp TCCGGGEEETTEEEEEEEETTTCCEEEGGGGHHHHHTT---CCCBCTTTCC
T ss_pred CCCcccEEEecCCCCeEEECCCCCcCCHHHHHHHhhcC---CCCCCCCCCC
Confidence 44433 44457888888999998776654433211110 1357888885
No 123
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=28.82 E-value=16 Score=24.52 Aligned_cols=25 Identities=24% Similarity=0.600 Sum_probs=16.0
Q ss_pred hhccccCCCCCCcceeEecCceeeccccccccc
Q psy7490 123 KEYVTCHTCRSPDTILQKDTRLFFLQCETCGSR 155 (193)
Q Consensus 123 ~~YVlC~~C~sPdT~L~k~~rl~~l~C~aCGa~ 155 (193)
...|.|+.|+.+ .+-...|..||.-
T Consensus 28 p~l~~c~~cGe~--------~~~H~vc~~CG~Y 52 (60)
T 3v2d_5 28 PTLVPCPECKAM--------KPPHTVCPECGYY 52 (60)
T ss_dssp CCCEECTTTCCE--------ECTTSCCTTTCEE
T ss_pred CceeECCCCCCe--------ecceEEcCCCCcC
Confidence 347788888874 2334458888754
No 124
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=28.69 E-value=25 Score=27.17 Aligned_cols=53 Identities=15% Similarity=0.547 Sum_probs=25.1
Q ss_pred ccccCCCCCC--cceeEecCceee---------cccccccccccccccccceeeeccEEEEEeccc
Q psy7490 125 YVTCHTCRSP--DTILQKDTRLFF---------LQCETCGSRCSVASIKSGFQKDTRLFFLQCETC 179 (193)
Q Consensus 125 YVlC~~C~sP--dT~L~k~~rl~~---------l~C~aCGa~~~V~~~k~~~~~~~rl~~~~c~~C 179 (193)
--.|..|+.| ++...++++++- .+|..|+..= .+...-..+..+.|...|-.|
T Consensus 87 CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~~kC~~C~~~I--~~~~~v~~a~~~~~H~~CF~C 150 (182)
T 2jtn_A 87 CLKCSDCHVPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGI--PPTQVVRRAQDFVYHLHCFAC 150 (182)
T ss_dssp TTSCTTTCCCCSSCCEEETTEEECHHHHHHTTSCCCTTTCCCC--CSSCCCCEETTEECCTTTCCC
T ss_pred cCccCCCCCccCCCceeECCEeeecCccccccccccccCCCcc--CCCceEEecCCCCEEeCCCcC
Confidence 3467777654 233455555432 4666676532 111111235566666444333
No 125
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=28.68 E-value=16 Score=24.41 Aligned_cols=26 Identities=23% Similarity=0.580 Sum_probs=17.8
Q ss_pred hhccccCCCCCCcceeEecCceeecccccccccc
Q psy7490 123 KEYVTCHTCRSPDTILQKDTRLFFLQCETCGSRC 156 (193)
Q Consensus 123 ~~YVlC~~C~sPdT~L~k~~rl~~l~C~aCGa~~ 156 (193)
...|.|+.|+.+ .+--..|..||.-+
T Consensus 28 p~l~~c~~cG~~--------~~pH~vc~~CG~Y~ 53 (60)
T 2zjr_Z 28 PNLTECPQCHGK--------KLSHHICPNCGYYD 53 (60)
T ss_dssp CCCEECTTTCCE--------ECTTBCCTTTCBSS
T ss_pred CCceECCCCCCE--------eCCceEcCCCCcCC
Confidence 457888888876 23456688888653
No 126
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=28.52 E-value=23 Score=23.66 Aligned_cols=27 Identities=26% Similarity=0.651 Sum_probs=19.9
Q ss_pred ceeecccccccccccccccccceeeeccEEEEEecccCCC
Q psy7490 143 RLFFLQCETCGSRCSVASIKSGFQKDTRLFFLQCETCGSR 182 (193)
Q Consensus 143 rl~~l~C~aCGa~~~V~~~k~~~~~~~rl~~~~c~~Cga~ 182 (193)
.+....|..|+++.|+.+.+ |.-||+.
T Consensus 16 ~~~k~ICrkC~ARnp~~A~~-------------CRKCg~~ 42 (56)
T 2ayj_A 16 VFLKKVCRKCGALNPIRATK-------------CRRCHST 42 (56)
T ss_dssp SCCCEEETTTCCEECTTCSS-------------CTTTCCC
T ss_pred HhchhhhccccCcCCccccc-------------ccCCCCC
Confidence 34467888888888888765 7778854
No 127
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=28.45 E-value=30 Score=24.73 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=13.1
Q ss_pred HHHHHHHHHhhhccccCCCCCCcc
Q psy7490 113 QIENVLRRYIKEYVTCHTCRSPDT 136 (193)
Q Consensus 113 ~iq~~L~~yI~~YVlC~~C~sPdT 136 (193)
.++..+..+=..--.||.|++|-+
T Consensus 35 ~l~~~l~~l~~~g~~CPvCgs~l~ 58 (112)
T 1l8d_A 35 DLKTAIEELKKAKGKCPVCGRELT 58 (112)
T ss_dssp HHHHHHHHHTTCSEECTTTCCEEC
T ss_pred HHHHHHHHhhcCCCCCCCCCCcCC
Confidence 334444433222346999998754
No 128
>1zso_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP: b.166.1.1
Probab=28.32 E-value=26 Score=27.86 Aligned_cols=14 Identities=0% Similarity=0.128 Sum_probs=7.3
Q ss_pred eccccccccccccc
Q psy7490 146 FLQCETCGSRCSVA 159 (193)
Q Consensus 146 ~l~C~aCGa~~~V~ 159 (193)
..+|+-|+...++.
T Consensus 70 v~KCk~C~re~Si~ 83 (164)
T 1zso_A 70 MIKWTEYPKYSTIN 83 (164)
T ss_dssp EECCSSSSCCEEEE
T ss_pred EEeccccCCcceEE
Confidence 45555555555443
No 129
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=27.89 E-value=7 Score=28.78 Aligned_cols=16 Identities=13% Similarity=0.287 Sum_probs=11.0
Q ss_pred hhhccccCCCCCCcce
Q psy7490 122 IKEYVTCHTCRSPDTI 137 (193)
Q Consensus 122 I~~YVlC~~C~sPdT~ 137 (193)
+-+..-||.|+.|-.-
T Consensus 5 LLdILaCP~cK~pL~l 20 (97)
T 2k5r_A 5 LLHLLCSPDTRQPLSL 20 (97)
T ss_dssp TCSSCCCCTTSSCCEE
T ss_pred HhhheECCCCCCcccc
Confidence 3456789999986544
No 130
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=27.06 E-value=25 Score=20.37 Aligned_cols=9 Identities=33% Similarity=0.767 Sum_probs=4.3
Q ss_pred ecccCCCcc
Q psy7490 176 CETCGSRCS 184 (193)
Q Consensus 176 c~~Cga~~~ 184 (193)
|..||+.++
T Consensus 22 C~~C~~pr~ 30 (32)
T 2lk0_A 22 CFRCGADKF 30 (32)
T ss_dssp CTTTCCBTT
T ss_pred ecCCCCcCC
Confidence 455555443
No 131
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=26.79 E-value=24 Score=29.25 Aligned_cols=32 Identities=13% Similarity=0.414 Sum_probs=20.3
Q ss_pred hhccccCCCCCCcceeEecCceeeccccccccccccc
Q psy7490 123 KEYVTCHTCRSPDTILQKDTRLFFLQCETCGSRCSVA 159 (193)
Q Consensus 123 ~~YVlC~~C~sPdT~L~k~~rl~~l~C~aCGa~~~V~ 159 (193)
...+.|+.|+..-.. .+. ...|..|+-...+.
T Consensus 36 ~r~~~C~~C~G~G~~---~g~--~~~C~~C~G~G~~~ 67 (248)
T 1nlt_A 36 NKQILCKECEGRGGK---KGA--VKKCTSCNGQGIKF 67 (248)
T ss_dssp EEEEECTTTTTCSBS---TTT--CCCCTTSSSSSCEE
T ss_pred eEEEeCCCCcCccCC---CCC--CccCCCCCCCcEEE
Confidence 447889999865431 222 26788887776543
No 132
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=26.67 E-value=25 Score=26.22 Aligned_cols=39 Identities=15% Similarity=0.469 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhhccccCCCCCCcceeEe-cCceeeccccccccc
Q psy7490 112 KQIENVLRRYIKEYVTCHTCRSPDTILQK-DTRLFFLQCETCGSR 155 (193)
Q Consensus 112 ~~iq~~L~~yI~~YVlC~~C~sPdT~L~k-~~rl~~l~C~aCGa~ 155 (193)
+.+.++-..=-..| .||.|+.+ .+.+ --++| +|..||..
T Consensus 24 K~vkkIE~~q~aky-~CpfCgk~--~vKR~a~GIW--~C~kCg~~ 63 (103)
T 4a17_Y 24 KVVKKFEITQHAKY-GCPFCGKV--AVKRAAVGIW--KCKPCKKI 63 (103)
T ss_dssp HHHHHHHHHHHSCE-ECTTTCCE--EEEEEETTEE--EETTTTEE
T ss_pred HHHHHHHHHhhcCC-CCCCCCCc--eeeecCcceE--EcCCCCCE
Confidence 44444443334556 79999876 3444 34564 78999764
No 133
>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}
Probab=26.44 E-value=1.5e+02 Score=22.45 Aligned_cols=38 Identities=21% Similarity=0.399 Sum_probs=26.8
Q ss_pred HHhhcCcee----ecCCCeE--EEEeeccHHHHHHHHHHHhhhc
Q psy7490 88 LAELGTSGS----VDGNSQL--IIKGRFQQKQIENVLRRYIKEY 125 (193)
Q Consensus 88 ~~ELgt~g~----id~~~~l--ii~G~~~~~~iq~~L~~yI~~Y 125 (193)
..++|..|+ +..+|++ .+.|..+.+.+.++|+..+.++
T Consensus 169 a~~~gv~g~Pt~~i~~~G~~~~~~~G~~~~~~l~~~l~~~~~~~ 212 (216)
T 2in3_A 169 VAQWGISGFPALVVESGTDRYLITTGYRPIEALRQLLDTWLQQH 212 (216)
T ss_dssp HHHTTCCSSSEEEEEETTEEEEEESSCCCHHHHHHHHHHHHHHC
T ss_pred HHHcCCcccceEEEEECCEEEEeccCCCCHHHHHHHHHHHHHhc
Confidence 345665553 2225666 7888889999999999887763
No 134
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=26.33 E-value=46 Score=30.33 Aligned_cols=18 Identities=11% Similarity=0.187 Sum_probs=11.8
Q ss_pred HHHHHHcCCChHHHHHHH
Q psy7490 70 TEICKTLHRLPKHLLDFL 87 (193)
Q Consensus 70 ~dIak~L~R~p~hv~ky~ 87 (193)
...|+..+.+|+.+...+
T Consensus 72 ~~~a~~~g~~~~~~~~~~ 89 (560)
T 3h99_A 72 MLKAQQLGITPEQMIGEM 89 (560)
T ss_dssp HHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHH
Confidence 356777788876665544
No 135
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.12 E-value=32 Score=22.29 Aligned_cols=13 Identities=23% Similarity=0.590 Sum_probs=7.9
Q ss_pred ecccccccccccc
Q psy7490 146 FLQCETCGSRCSV 158 (193)
Q Consensus 146 ~l~C~aCGa~~~V 158 (193)
..+|.+|+.+++-
T Consensus 25 ~~~C~~C~~pr~~ 37 (53)
T 2d9g_A 25 AFKCMMCDVRKGT 37 (53)
T ss_dssp CSSCSSSCCCCCC
T ss_pred CCccCCCCCcCCc
Confidence 4566666666654
No 136
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.12 E-value=38 Score=21.70 Aligned_cols=28 Identities=18% Similarity=0.507 Sum_probs=16.3
Q ss_pred cccCCCCCCcc--eeEecCceeeccccccc
Q psy7490 126 VTCHTCRSPDT--ILQKDTRLFFLQCETCG 153 (193)
Q Consensus 126 VlC~~C~sPdT--~L~k~~rl~~l~C~aCG 153 (193)
-.|..|+.|=+ .+.-.++.|...|=.|-
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~ 35 (70)
T 2d8x_A 6 SGCHQCGEFIIGRVIKAMNNSWHPECFRCD 35 (70)
T ss_dssp SBCSSSCCBCCSCCEEETTEEECTTTSBCS
T ss_pred CcCccCCCEecceEEEECcccccccCCEeC
Confidence 36888887532 34445677765544443
No 137
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=26.08 E-value=52 Score=23.50 Aligned_cols=54 Identities=13% Similarity=0.327 Sum_probs=29.1
Q ss_pred hccccCCCCCC--c-ceeEecCcee---------ecccccccccccccccccceeeeccEEE--EEeccc
Q psy7490 124 EYVTCHTCRSP--D-TILQKDTRLF---------FLQCETCGSRCSVASIKSGFQKDTRLFF--LQCETC 179 (193)
Q Consensus 124 ~YVlC~~C~sP--d-T~L~k~~rl~---------~l~C~aCGa~~~V~~~k~~~~~~~rl~~--~~c~~C 179 (193)
+--.|..|+.| + +-..++++++ -.+|.+|+..= .+....+.+..+.|. ..|-.|
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I--~~~~~~~~a~~~~~H~~~~CF~C 96 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAI--DPEVQRVTYNNFSWHASTECFLC 96 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBC--CTTSCEEEETTEEEESSTTTSBC
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcC--CcCceEEECCCCEeeCCCCCcCc
Confidence 34478888764 2 2334555542 34677777743 221123456777887 444444
No 138
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=25.99 E-value=56 Score=19.42 Aligned_cols=25 Identities=8% Similarity=0.181 Sum_probs=21.7
Q ss_pred ccHHHHHHcCCChHHHHHHHHHhhcC
Q psy7490 68 NFTEICKTLHRLPKHLLDFLLAELGT 93 (193)
Q Consensus 68 Nf~dIak~L~R~p~hv~ky~~~ELgt 93 (193)
+..++|+.|+.+++.+..+|. +.|.
T Consensus 4 rv~~lAkel~~~~k~l~~~l~-~~g~ 28 (49)
T 1nd9_A 4 TIKTLAAERQTSVERLVQQFA-DAGI 28 (49)
T ss_dssp CTTHHHHHHSSSHHHHHHHHH-HHTS
T ss_pred cHHHHHHHHCcCHHHHHHHHH-HcCC
Confidence 467999999999999999985 6776
No 139
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=25.58 E-value=70 Score=25.09 Aligned_cols=24 Identities=21% Similarity=0.487 Sum_probs=12.9
Q ss_pred ccCCCCCCcceeEecCceeecccccccccc
Q psy7490 127 TCHTCRSPDTILQKDTRLFFLQCETCGSRC 156 (193)
Q Consensus 127 lC~~C~sPdT~L~k~~rl~~l~C~aCGa~~ 156 (193)
+|+.|+..-. +.. --.|..||++.
T Consensus 140 ~C~~CG~i~~-----~~~-p~~CP~Cg~~~ 163 (170)
T 3pwf_A 140 ICPICGYTAV-----DEA-PEYCPVCGAPK 163 (170)
T ss_dssp ECTTTCCEEE-----SCC-CSBCTTTCCBG
T ss_pred EeCCCCCeeC-----CCC-CCCCCCCCCCH
Confidence 4777776321 112 22677777664
No 140
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=25.41 E-value=55 Score=23.11 Aligned_cols=26 Identities=31% Similarity=0.264 Sum_probs=23.2
Q ss_pred ccHHHHHHcCCChHHHHHHHHHhhcCc
Q psy7490 68 NFTEICKTLHRLPKHLLDFLLAELGTS 94 (193)
Q Consensus 68 Nf~dIak~L~R~p~hv~ky~~~ELgt~ 94 (193)
++.++|+.++-++.|+.+.|..+ |..
T Consensus 25 ~~~~lA~~~~~S~~~l~r~fk~~-G~s 50 (120)
T 3mkl_A 25 TLARIASELLMSPSLLKKKLREE-ETS 50 (120)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHT-TCC
T ss_pred CHHHHHHHHCcCHHHHHHHHHHc-CCC
Confidence 57899999999999999999887 864
No 141
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=31.29 E-value=15 Score=25.65 Aligned_cols=21 Identities=14% Similarity=0.365 Sum_probs=17.2
Q ss_pred eccHHHHHHcCCChHHHHHHH
Q psy7490 67 ANFTEICKTLHRLPKHLLDFL 87 (193)
Q Consensus 67 ~Nf~dIak~L~R~p~hv~ky~ 87 (193)
.-|..||+.|||+|+.|..=|
T Consensus 37 ~tfa~iA~~Lnks~~QV~~RF 57 (70)
T 2lr8_A 37 KTFAYLAAKLDKNPNQVSERF 57 (70)
Confidence 458899999999999886544
No 142
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=25.35 E-value=16 Score=25.00 Aligned_cols=56 Identities=18% Similarity=0.440 Sum_probs=30.3
Q ss_pred hccccCCCCCCcceeEecCceeecccccccccccccccccceeeeccEEEEEecccCCCccc
Q psy7490 124 EYVTCHTCRSPDTILQKDTRLFFLQCETCGSRCSVASIKSGFQKDTRLFFLQCETCGSRCSV 185 (193)
Q Consensus 124 ~YVlC~~C~sPdT~L~k~~rl~~l~C~aCGa~~~V~~~k~~~~~~~rl~~~~c~~Cga~~~v 185 (193)
+=+.| .|+.|+ +....++.|..|..+-...=+.-.-......-...|..|-.....
T Consensus 11 ~~~~C-~C~~~~-----d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~ 66 (79)
T 1wep_A 11 VPVYC-LCRQPY-----NVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGP 66 (79)
T ss_dssp CCCCS-TTSCSC-----CSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCS
T ss_pred CccEE-EcCCcc-----CCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccCC
Confidence 34567 788886 223457899999877544322100000111234569999876533
No 143
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=25.32 E-value=30 Score=29.80 Aligned_cols=12 Identities=17% Similarity=0.531 Sum_probs=7.0
Q ss_pred eccccccccccc
Q psy7490 146 FLQCETCGSRCS 157 (193)
Q Consensus 146 ~l~C~aCGa~~~ 157 (193)
...|..||....
T Consensus 268 ~~~C~~C~~~~~ 279 (309)
T 1pqv_S 268 RFTCGKCKEKKV 279 (309)
T ss_pred cccCCCCCCCee
Confidence 345666666553
No 144
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0
Probab=25.32 E-value=1.3e+02 Score=22.34 Aligned_cols=57 Identities=9% Similarity=0.049 Sum_probs=38.0
Q ss_pred eccHHHHHHcCCChHHHHHHH---------------HHhhcCcee---ecCCCeEEEE--eeccHHHHHHHHHHHhhh
Q psy7490 67 ANFTEICKTLHRLPKHLLDFL---------------LAELGTSGS---VDGNSQLIIK--GRFQQKQIENVLRRYIKE 124 (193)
Q Consensus 67 ~Nf~dIak~L~R~p~hv~ky~---------------~~ELgt~g~---id~~~~lii~--G~~~~~~iq~~L~~yI~~ 124 (193)
..+.++|+.+.=+++-+.+.+ ..++|..|+ += ||++++. |..+.+.+.++|+.-+++
T Consensus 109 ~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~v-ng~~~~~~~G~~~~e~l~~~i~~l~~k 185 (192)
T 3h93_A 109 EEMADFLAGKGVDKEKFLSTYNSFAIKGQMEKAKKLAMAYQVTGVPTMVV-NGKYRFDIGSAGGPEETLKLADYLIEK 185 (192)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHTCHHHHHHHHHHHHHHHHHTCCSSSEEEE-TTTEEEEHHHHTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHhhCHHHHHHHHHHHHHHHHhCCCCCCeEEE-CCEEEecccccCCHHHHHHHHHHHHHH
Confidence 456677777777766554332 345665554 22 5677777 888899999998887654
No 145
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=25.26 E-value=98 Score=20.04 Aligned_cols=38 Identities=21% Similarity=0.160 Sum_probs=25.7
Q ss_pred cHHHHHHcCCChHHHHHHH--HHhhcCceeecCCCeEEEEe
Q psy7490 69 FTEICKTLHRLPKHLLDFL--LAELGTSGSVDGNSQLIIKG 107 (193)
Q Consensus 69 f~dIak~L~R~p~hv~ky~--~~ELgt~g~id~~~~lii~G 107 (193)
..|||+.|+-+...|.+.+ +.+-|.-.+ +..|.+.+-|
T Consensus 28 ~~eLA~~lglsr~tv~~~l~~L~~~G~I~~-~~~G~y~lg~ 67 (67)
T 2heo_A 28 IFQLVKKCQVPKKTLNQVLYRLKKEDRVSS-PSPKYWSIGG 67 (67)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHTTSEEE-EETTEEEECC
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHCCcEec-CCCceEeeCC
Confidence 5699999999999999886 344454211 2356666644
No 146
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=24.79 E-value=60 Score=24.28 Aligned_cols=32 Identities=19% Similarity=0.582 Sum_probs=17.3
Q ss_pred ccCCCCC---Ccce--eEecCc---eeecccccccccccc
Q psy7490 127 TCHTCRS---PDTI--LQKDTR---LFFLQCETCGSRCSV 158 (193)
Q Consensus 127 lC~~C~s---PdT~--L~k~~r---l~~l~C~aCGa~~~V 158 (193)
+|..|++ |... +..+++ .....|..||...-.
T Consensus 62 ~Ck~C~s~LIPG~t~~vri~~~~k~~vv~tCl~Cg~~kR~ 101 (123)
T 2k3r_A 62 YCKKCHAFLVPGINARVRLRQKRMPHIVVKCLECGHIMRY 101 (123)
T ss_dssp BCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTTEEEEE
T ss_pred hccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEE
Confidence 6888887 4421 111222 345677777765533
No 147
>2k7r_A Primosomal protein DNAI; DNAI N-terminal domain, helicase-loading protein, ATP- binding, DNA replication, nucleotide-binding, primosome; NMR {Bacillus subtilis}
Probab=24.64 E-value=1.2e+02 Score=21.71 Aligned_cols=60 Identities=23% Similarity=0.372 Sum_probs=39.1
Q ss_pred ccHHHHHHcCCChHHHHHHHHHhhcCceeecCCCeEEEEeeccHHHHH---HHHHHHhhhccccCCCC---C-Cc-----
Q psy7490 68 NFTEICKTLHRLPKHLLDFLLAELGTSGSVDGNSQLIIKGRFQQKQIE---NVLRRYIKEYVTCHTCR---S-PD----- 135 (193)
Q Consensus 68 Nf~dIak~L~R~p~hv~ky~~~ELgt~g~id~~~~lii~G~~~~~~iq---~~L~~yI~~YVlC~~C~---s-Pd----- 135 (193)
.+.++.+.+--||+ |.+||..-=. ..+.+.|+ ..|..|+.+.-.|+.|. . |.
T Consensus 20 ~~~~~~~~vl~dP~-V~~Fl~~h~~---------------~l~~~~I~~s~~kL~ey~~e~~~c~~~~gl~~C~~~~kGy 83 (106)
T 2k7r_A 20 RLEQMKEKVMKDQD-VQAFLKENEE---------------VIDQKMIEKSLNKLYEYIEQSKNCSYCSEDENCNNLLEGY 83 (106)
T ss_dssp HHHHHHHHHTTCHH-HHHHHHHSTT---------------TCCHHHHHHTHHHHHHHHHSCSSCTTTSCCTTSCCSSTTE
T ss_pred HHHHHHHHHHcCHH-HHHHHHHChh---------------hCCHHHHHhhHHHHHHHHHHHHhhccCcccccCCCcCCCc
Confidence 34567888888887 8888765311 12233333 36889999999999988 4 44
Q ss_pred -ceeEecCc
Q psy7490 136 -TILQKDTR 143 (193)
Q Consensus 136 -T~L~k~~r 143 (193)
..|+.+++
T Consensus 84 ~p~L~~~~g 92 (106)
T 2k7r_A 84 HPKLVVNGR 92 (106)
T ss_dssp EEEEEEETT
T ss_pred ccEEEecCC
Confidence 45665544
No 148
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C
Probab=24.60 E-value=31 Score=19.91 Aligned_cols=10 Identities=30% Similarity=0.753 Sum_probs=5.1
Q ss_pred EecccCCCcc
Q psy7490 175 QCETCGSRCS 184 (193)
Q Consensus 175 ~c~~Cga~~~ 184 (193)
.|+.|++.|+
T Consensus 24 ~Ce~C~~~r~ 33 (34)
T 3a9j_C 24 RCEQCEMPRH 33 (34)
T ss_dssp BCTTTCCBSC
T ss_pred eeCCCCCcCc
Confidence 3555555543
No 149
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=24.58 E-value=20 Score=26.16 Aligned_cols=28 Identities=39% Similarity=0.761 Sum_probs=16.7
Q ss_pred ecccccccccccccccccceeeeccEEEEEecccCCCc
Q psy7490 146 FLQCETCGSRCSVASIKSGFQKDTRLFFLQCETCGSRC 183 (193)
Q Consensus 146 ~l~C~aCGa~~~V~~~k~~~~~~~rl~~~~c~~Cga~~ 183 (193)
|.+|. |+.+. + ...|+=-..|..||+..
T Consensus 48 FFkC~-C~~Rt------~---sl~r~P~~~C~~Cg~~~ 75 (92)
T 2kwq_A 48 FFKCP-CGNRT------I---SLDRLPKKHCSTCGLFK 75 (92)
T ss_dssp EEECT-TSCEE------E---ESSSSCCSCCTTTCSCC
T ss_pred EEECC-CCCce------e---EeeeCCCCCCCCCCCCc
Confidence 66775 77775 1 22344445677777654
No 150
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=24.48 E-value=14 Score=23.56 Aligned_cols=26 Identities=19% Similarity=0.581 Sum_probs=11.7
Q ss_pred ccCCCCCCcc--eeEecCceeecccccc
Q psy7490 127 TCHTCRSPDT--ILQKDTRLFFLQCETC 152 (193)
Q Consensus 127 lC~~C~sPdT--~L~k~~rl~~l~C~aC 152 (193)
.|..|+.|=+ .+.-.++.|...|=.|
T Consensus 7 ~C~~C~~~I~~~~~~a~~~~~H~~CF~C 34 (66)
T 1nyp_A 7 ICGACRRPIEGRVVNAMGKQWHVEHFVC 34 (66)
T ss_dssp EETTTTEECCSCEECCTTSBEETTTCBC
T ss_pred CCcccCCEecceEEEECccccccCcCEE
Confidence 5666665332 2222455554444333
No 151
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=24.43 E-value=11 Score=24.63 Aligned_cols=29 Identities=17% Similarity=0.445 Sum_probs=19.9
Q ss_pred ccccCCCCCCcceeEecCceeecccccccccccc
Q psy7490 125 YVTCHTCRSPDTILQKDTRLFFLQCETCGSRCSV 158 (193)
Q Consensus 125 YVlC~~C~sPdT~L~k~~rl~~l~C~aCGa~~~V 158 (193)
-+.|+.|+.|.- ++ ..++.|..|......
T Consensus 6 ~~~C~~C~~~~~----~~-~~mI~Cd~C~~WfH~ 34 (64)
T 1we9_A 6 SGQCGACGESYA----AD-EFWICCDLCEMWFHG 34 (64)
T ss_dssp CCCCSSSCCCCC----SS-SCEEECSSSCCEEET
T ss_pred CCCCCCCCCccC----CC-CCEEEccCCCCCCCc
Confidence 457999998852 12 346889999766544
No 152
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=24.38 E-value=28 Score=24.91 Aligned_cols=51 Identities=18% Similarity=0.505 Sum_probs=29.1
Q ss_pred hccccCCCCCCcceeEecCceeecccccccccccccccccceeeeccEEEEEecccCCCc
Q psy7490 124 EYVTCHTCRSPDTILQKDTRLFFLQCETCGSRCSVASIKSGFQKDTRLFFLQCETCGSRC 183 (193)
Q Consensus 124 ~YVlC~~C~sPdT~L~k~~rl~~l~C~aCGa~~~V~~~k~~~~~~~rl~~~~c~~Cga~~ 183 (193)
+-|.| .|+.++- ++ ..+.|..|.......=+.-........| .|..|..+.
T Consensus 27 d~vrC-iC~~~~~-----~~-~mi~Cd~C~~w~H~~C~~~~~~~~p~~w--~C~~C~~~~ 77 (98)
T 2lv9_A 27 DVTRC-ICGFTHD-----DG-YMICCDKCSVWQHIDCMGIDRQHIPDTY--LCERCQPRN 77 (98)
T ss_dssp CBCCC-TTSCCSC-----SS-CEEEBTTTCBEEETTTTTCCTTSCCSSB--CCTTTSSSC
T ss_pred CCEEe-ECCCccC-----CC-cEEEcCCCCCcCcCcCCCCCccCCCCCE--ECCCCcCCC
Confidence 35778 6888752 33 3588998887765532221111222334 499997554
No 153
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=24.18 E-value=98 Score=20.26 Aligned_cols=29 Identities=28% Similarity=0.390 Sum_probs=17.0
Q ss_pred ccccCCCCCCc---ceeEecCceeeccccccc
Q psy7490 125 YVTCHTCRSPD---TILQKDTRLFFLQCETCG 153 (193)
Q Consensus 125 YVlC~~C~sPd---T~L~k~~rl~~l~C~aCG 153 (193)
-..|..|+.|= ..+.-.++.|...|=.|-
T Consensus 7 ~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~ 38 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQCDGRSFHRCCFLCM 38 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEETTEEEESSSEECS
T ss_pred CCcCcCcCccccCceeEEeCCcccccccCccC
Confidence 35799999743 244446777765444443
No 154
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=24.05 E-value=1.5e+02 Score=20.02 Aligned_cols=34 Identities=15% Similarity=0.164 Sum_probs=25.9
Q ss_pred HHHHHHHhhcCceeecCCCe--------EEEEeeccHHHHHHHH
Q psy7490 83 LLDFLLAELGTSGSVDGNSQ--------LIIKGRFQQKQIENVL 118 (193)
Q Consensus 83 v~ky~~~ELgt~g~id~~~~--------lii~G~~~~~~iq~~L 118 (193)
..+-|..+.|+.-.+++++. +.|.| +++.++...
T Consensus 35 ~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G--~~~~v~~A~ 76 (85)
T 2opv_A 35 TIKQLQERAGVKMILIQDGSQNTNVDKPLRIIG--DPYKVQQAC 76 (85)
T ss_dssp HHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEE--CHHHHHHHH
T ss_pred HHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEe--CHHHHHHHH
Confidence 34668889999888877666 99999 777776643
No 155
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=23.84 E-value=34 Score=23.04 Aligned_cols=8 Identities=38% Similarity=1.311 Sum_probs=4.2
Q ss_pred cccccccc
Q psy7490 149 CETCGSRC 156 (193)
Q Consensus 149 C~aCGa~~ 156 (193)
|..||...
T Consensus 20 CP~CG~~t 27 (60)
T 2aus_D 20 CPVCGEKT 27 (60)
T ss_dssp CTTTCSBC
T ss_pred CcCCCCcc
Confidence 55555544
No 156
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=23.60 E-value=33 Score=20.26 Aligned_cols=11 Identities=18% Similarity=0.597 Sum_probs=5.7
Q ss_pred ecccccccccc
Q psy7490 146 FLQCETCGSRC 156 (193)
Q Consensus 146 ~l~C~aCGa~~ 156 (193)
..+|.||..++
T Consensus 21 ~~kC~aC~tpk 31 (33)
T 3gj3_B 21 AVKCVACETPK 31 (33)
T ss_dssp CSBCTTTCCBC
T ss_pred cCEEcccCCCC
Confidence 34555555544
No 157
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=23.52 E-value=67 Score=25.42 Aligned_cols=11 Identities=18% Similarity=0.190 Sum_probs=6.1
Q ss_pred HHHHHHHHHHh
Q psy7490 112 KQIENVLRRYI 122 (193)
Q Consensus 112 ~~iq~~L~~yI 122 (193)
+.++++|++.-
T Consensus 133 ~~~~~~l~~l~ 143 (191)
T 1lko_A 133 KRFLDFARNIK 143 (191)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhh
Confidence 44556666544
No 158
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=23.43 E-value=52 Score=19.85 Aligned_cols=21 Identities=14% Similarity=0.241 Sum_probs=17.9
Q ss_pred ccHHHHHHcCCChHHHHHHHH
Q psy7490 68 NFTEICKTLHRLPKHLLDFLL 88 (193)
Q Consensus 68 Nf~dIak~L~R~p~hv~ky~~ 88 (193)
...+||+.|+.++..|.+|+.
T Consensus 33 s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 33 TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp CHHHHHHHHTSCHHHHHHHHT
T ss_pred CHHHHHHHHCcCHHHHHHHHH
Confidence 467999999999999988873
No 159
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=23.16 E-value=78 Score=22.46 Aligned_cols=29 Identities=7% Similarity=0.291 Sum_probs=22.9
Q ss_pred ecCCCeEE--EEeeccHHHHHHHHHHHhhhc
Q psy7490 97 VDGNSQLI--IKGRFQQKQIENVLRRYIKEY 125 (193)
Q Consensus 97 id~~~~li--i~G~~~~~~iq~~L~~yI~~Y 125 (193)
||.+|+++ ..|..++++|.+.|++.+++|
T Consensus 133 id~~G~i~~~~~g~~~~~~l~~~l~~ll~~~ 163 (164)
T 2ggt_A 133 IGPDGEFLDYFGQNKRKGEIAASIATHMRPY 163 (164)
T ss_dssp ECTTSCEEEEEETTCCHHHHHHHHHHHHGGG
T ss_pred ECCCCeEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 57666554 567788999999999998877
No 160
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=23.13 E-value=52 Score=26.43 Aligned_cols=27 Identities=11% Similarity=0.126 Sum_probs=24.7
Q ss_pred ccHHHHHHcCCChHHHHHHHHHhhcCc
Q psy7490 68 NFTEICKTLHRLPKHLLDFLLAELGTS 94 (193)
Q Consensus 68 Nf~dIak~L~R~p~hv~ky~~~ELgt~ 94 (193)
++.++|+.++-++.|+.+.|..++|.+
T Consensus 21 ~~~~la~~~~~s~~~l~r~f~~~~g~s 47 (292)
T 1d5y_A 21 SLDNVAAKAGYSKWHLQRMFKDVTGHA 47 (292)
T ss_dssp CCHHHHTTTSSCHHHHHHHHHHHHSSC
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHCcC
Confidence 467999999999999999999999975
No 161
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=22.85 E-value=25 Score=25.97 Aligned_cols=27 Identities=33% Similarity=0.623 Sum_probs=18.1
Q ss_pred hccccCCCCCCcceeEecCceeecccccccccc
Q psy7490 124 EYVTCHTCRSPDTILQKDTRLFFLQCETCGSRC 156 (193)
Q Consensus 124 ~YVlC~~C~sPdT~L~k~~rl~~l~C~aCGa~~ 156 (193)
.-.+|+-|++.--.+.| ..|.+||.+.
T Consensus 15 tH~lCrRCG~~sfH~qK------~~CgkCGYpa 41 (97)
T 2zkr_2 15 THTLCRRCGSKAYHLQK------STCGKCGYPA 41 (97)
T ss_dssp CEECCTTTCSSCEETTS------CCBTTTCTTT
T ss_pred CCCcCCCCCCccCcCcc------ccCcccCCch
Confidence 35689999987553322 3788898753
No 162
>1k8r_B Protein kinase BYR2; signal transduction, cancer, GTPase, ubiquitin fold, signaling protein; HET: GNP; 3.00A {Schizosaccharomyces pombe} SCOP: d.15.1.5 PDB: 1i35_A
Probab=22.69 E-value=1.3e+02 Score=22.23 Aligned_cols=66 Identities=15% Similarity=0.198 Sum_probs=30.8
Q ss_pred ccHHHHHHHHHHHHHhcCCCcccCcceeeecCCCeEEEecCeeeEEe--ccHHHHHHcCCChHHHHHHHHHhhcCceeec
Q psy7490 21 YTYEELLSRVFEIMREKNPDMVAGKKQKFVMRPPQVVRIGTKKTSFA--NFTEICKTLHRLPKHLLDFLLAELGTSGSVD 98 (193)
Q Consensus 21 ~~Y~~LL~R~~~~L~~~~p~~~~~~~~R~~mP~p~v~~~Gg~KTvi~--Nf~dIak~L~R~p~hv~ky~~~ELgt~g~id 98 (193)
.+|.+.|.+|..+..-.+|+. ...+ | ...|.--.|. -|.+||..+.||.
T Consensus 19 ~~y~~~L~~ALkKF~ledpsk----w~Vc------v-tqssr~~~it~e~f~~icr~~srPE------------------ 69 (110)
T 1k8r_B 19 GDYQKTLAIALKKFSLEDASK----FIVC------V-SQSSRIKLITEEEFKQICFNSSSPE------------------ 69 (110)
T ss_dssp SCHHHHHHHHHHHHTCCCTTS----EEEE------E-ECSSSEEECCCC-------------------------------
T ss_pred hhHHHHHHHHHHHcCCCChhH----eEEE------E-ecCceEEEecHhHHHHHHhCCCCcc------------------
Confidence 478999999999985444442 2222 1 2223333333 3889999988875
Q ss_pred CCCeEEEEeeccHH-HHHH
Q psy7490 99 GNSQLIIKGRFQQK-QIEN 116 (193)
Q Consensus 99 ~~~~lii~G~~~~~-~iq~ 116 (193)
-+||||.-+-++- .+++
T Consensus 70 -ReRLIl~~K~~p~psfEd 87 (110)
T 1k8r_B 70 -RDRLIIVPKEKPCPSFED 87 (110)
T ss_dssp -CCCEEEEESSSCCCCHHH
T ss_pred -hheeEEecCCCCCCCHHH
Confidence 5689988776654 4444
No 163
>2x5c_A Hypothetical protein ORF131; viral protein; HET: GOL; 1.80A {Pyrobaculum spherical virus}
Probab=22.58 E-value=31 Score=25.77 Aligned_cols=12 Identities=42% Similarity=0.952 Sum_probs=5.7
Q ss_pred cccccccccccc
Q psy7490 147 LQCETCGSRCSV 158 (193)
Q Consensus 147 l~C~aCGa~~~V 158 (193)
-+|..||+..+|
T Consensus 53 akcprcgaegsv 64 (131)
T 2x5c_A 53 AKCPRCGAEGSV 64 (131)
T ss_dssp EECTTTSCEEEE
T ss_pred ccCCCCCCccce
Confidence 345555554444
No 164
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=22.25 E-value=39 Score=30.56 Aligned_cols=40 Identities=23% Similarity=0.519 Sum_probs=30.3
Q ss_pred eeccccccccccccccc--ccceeeeccEEEEEecccCCCcc
Q psy7490 145 FFLQCETCGSRCSVASI--KSGFQKDTRLFFLQCETCGSRCS 184 (193)
Q Consensus 145 ~~l~C~aCGa~~~V~~~--k~~~~~~~rl~~~~c~~Cga~~~ 184 (193)
+-..|..||+....... +.-|....=+....|..||-+.+
T Consensus 219 ~~s~Cp~C~~~~~t~~~~~~IP~F~eViims~~C~~CGyr~n 260 (404)
T 2qkd_A 219 FNTNCPECNAPAQTNMKLVQIPHFKEVIIMATNCENCGHRTN 260 (404)
T ss_dssp EEECCTTTCCTTCEEEEEECCTTSCCEEEEEEECSSSCCEEE
T ss_pred ecccCccCCCccEEEEEEEeCCCCCcEEEEEEECCCCCCccc
Confidence 46789999988765433 34456777889999999998763
No 165
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=22.22 E-value=32 Score=22.46 Aligned_cols=8 Identities=38% Similarity=1.348 Sum_probs=4.2
Q ss_pred ccCCCCCC
Q psy7490 127 TCHTCRSP 134 (193)
Q Consensus 127 lC~~C~sP 134 (193)
.|..|+.|
T Consensus 17 ~C~~C~~~ 24 (77)
T 2egq_A 17 KCAGCKNP 24 (77)
T ss_dssp CCSSSCCC
T ss_pred cCcccCCc
Confidence 45555553
No 166
>1jrm_A MTH0637, conserved hypothetical protein MTH637; alpha-beta protein, structural genomics, OCSP, NESG; NMR {Methanothermobacterthermautotrophicus} SCOP: d.206.1.1
Probab=22.15 E-value=1.6e+02 Score=21.48 Aligned_cols=41 Identities=10% Similarity=0.276 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhcCceeec-C----CCeEEEEeeccHHHHHHHHHHHh
Q psy7490 81 KHLLDFLLAELGTSGSVD-G----NSQLIIKGRFQQKQIENVLRRYI 122 (193)
Q Consensus 81 ~hv~ky~~~ELgt~g~id-~----~~~lii~G~~~~~~iq~~L~~yI 122 (193)
+++.+||.+.||.+-+|. | +-.+.|.| .+++++...|..++
T Consensus 54 ~ali~~LAk~l~s~V~i~~G~tsR~K~v~I~~-~~~~~l~~~L~~~~ 99 (104)
T 1jrm_A 54 REIIKEFSETFGRDVEIVSGQKSRQKTIRIQG-MGRDLFLKLVSEKF 99 (104)
T ss_dssp HHHHHHHHHHHSSEEEECSCGGGSEEEEEEES-CCHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhCCCEEEEecCCCCceEEEEcC-CCHHHHHHHHHHHh
Confidence 699999999999544444 2 13567776 57888888887654
No 167
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=21.81 E-value=14 Score=30.61 Aligned_cols=42 Identities=21% Similarity=0.499 Sum_probs=26.0
Q ss_pred eeEecCceeecccccccccccccccccceeeeccEEEEEecccCC
Q psy7490 137 ILQKDTRLFFLQCETCGSRCSVASIKSGFQKDTRLFFLQCETCGS 181 (193)
Q Consensus 137 ~L~k~~rl~~l~C~aCGa~~~V~~~k~~~~~~~rl~~~~c~~Cga 181 (193)
.+.-.+.+..++|..|+...+...+...+. ... .-+|..||.
T Consensus 114 v~elHG~~~~~~C~~C~~~~~~~~~~~~~~-~~~--~p~C~~Cgg 155 (253)
T 1ma3_A 114 VLELHGSMDKLDCLDCHETYDWSEFVEDFN-KGE--IPRCRKCGS 155 (253)
T ss_dssp EEETTEEEEEEEETTTCCEEEGGGTHHHHH-TTC--CCCCTTTCC
T ss_pred EEEeCCCcCeeeeCCCCCcCcHHHHHHHhc-cCC--CCCCCCCCC
Confidence 444568888899999998755544321111 111 358999997
No 168
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=21.37 E-value=88 Score=22.06 Aligned_cols=28 Identities=14% Similarity=0.223 Sum_probs=22.5
Q ss_pred ecCCCeEEEE--eeccHHHHHHHHHHHhhh
Q psy7490 97 VDGNSQLIIK--GRFQQKQIENVLRRYIKE 124 (193)
Q Consensus 97 id~~~~lii~--G~~~~~~iq~~L~~yI~~ 124 (193)
||.+|+++-. |..+.+.+++.|++.+.+
T Consensus 127 id~~G~i~~~~~g~~~~~~l~~~i~~ll~~ 156 (160)
T 3lor_A 127 ADRKGRIRQVQFGQVDDFVLGLLLGSLLSE 156 (160)
T ss_dssp ECTTSBEEEEEESCCCHHHHHHHHHHHHTC
T ss_pred ECCCCcEEEEecCcCCHHHHHHHHHHHHhc
Confidence 6777766554 999999999999988765
No 169
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}
Probab=21.23 E-value=58 Score=30.15 Aligned_cols=22 Identities=14% Similarity=0.461 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhhhccccCCCC
Q psy7490 111 QKQIENVLRRYIKEYVTCHTCR 132 (193)
Q Consensus 111 ~~~iq~~L~~yI~~YVlC~~C~ 132 (193)
...|+..|+.||.+|-.|..|.
T Consensus 336 r~nLk~Ai~~Yl~e~~~c~~C~ 357 (540)
T 3nsj_A 336 REALRQAISHYIMSRARWQNCS 357 (540)
T ss_dssp HHHHHHHHHHHHHHTCBCCCTT
T ss_pred HHHHHHHHHHHHHhcCchhhhc
Confidence 4789999999999999996664
No 170
>1k3e_A CEST; chaperone, secretion, type III, intimin receptor; 2.80A {Escherichia coli} SCOP: d.198.1.1
Probab=21.23 E-value=1.6e+02 Score=23.08 Aligned_cols=99 Identities=16% Similarity=0.202 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhcCCCcccCcce--eeecCCCeEEEec----C---eeeEEeccHHHHHHcCCChHHHHHHHHHhhcCc
Q psy7490 24 EELLSRVFEIMREKNPDMVAGKKQ--KFVMRPPQVVRIG----T---KKTSFANFTEICKTLHRLPKHLLDFLLAELGTS 94 (193)
Q Consensus 24 ~~LL~R~~~~L~~~~p~~~~~~~~--R~~mP~p~v~~~G----g---~KTvi~Nf~dIak~L~R~p~hv~ky~~~ELgt~ 94 (193)
+.||..+=..| ..|++.-++.. .+.|=.-..+... . .-..+..+..-++... .---...++++|-|-+
T Consensus 6 e~LL~efg~~l--GLp~L~fDeng~C~L~IDd~i~i~l~~~~d~~l~L~g~L~~~pp~~~~~~-~~lL~aN~~~~etgg~ 82 (156)
T 1k3e_A 6 ELLLEKFAEKI--GIGSISFNENRLCSFAIDEIYYISLSDANDEYMMIYGVCGKFPTDNSNFA-LEILNANLWFAENGGP 82 (156)
T ss_dssp HHHHHHHHHHH--SCCCCCCCTTSCCEEEECCCCEEEEECCSSSEEEEEEEEEECCTTCHHHH-HHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHc--CCCCcccCCCCcEEEEECCeEEEEEEEcCCCcEEEEEEcCCCCCchHHHH-HHHHHHHhhHhhcCCe
Confidence 67888887777 47877644433 3333332111111 1 1112222222222222 1112445666777765
Q ss_pred ee-ecCCC-eEEEEeecc-----HHHHHHHHHHHhhhc
Q psy7490 95 GS-VDGNS-QLIIKGRFQ-----QKQIENVLRRYIKEY 125 (193)
Q Consensus 95 g~-id~~~-~lii~G~~~-----~~~iq~~L~~yI~~Y 125 (193)
+- +|+++ .+++.++++ ..+|++.|..||+.+
T Consensus 83 ~L~~~~n~~~Lll~~ri~~~~ls~~~l~~~Le~fv~~~ 120 (156)
T 1k3e_A 83 YLCYEAGAQSLLLALRFPLDDATPEKLENEIEVVVKSM 120 (156)
T ss_dssp EEEEETTTTEEEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEccCCCeEEEEEEecccccCHHHHHHHHHHHHHHH
Confidence 43 66665 699888887 788888888888754
No 171
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=20.67 E-value=2e+02 Score=21.95 Aligned_cols=67 Identities=12% Similarity=0.215 Sum_probs=44.9
Q ss_pred eccHHHHHHcCCChHHHHHHH--HHhhcCceeecC-CCeEEEEeeccHHHHHHHHHHHhhhccccCCCCCC
Q psy7490 67 ANFTEICKTLHRLPKHLLDFL--LAELGTSGSVDG-NSQLIIKGRFQQKQIENVLRRYIKEYVTCHTCRSP 134 (193)
Q Consensus 67 ~Nf~dIak~L~R~p~hv~ky~--~~ELgt~g~id~-~~~lii~G~~~~~~iq~~L~~yI~~YVlC~~C~sP 134 (193)
....+||+.++-+|.+|.|-+ +..-|.=.+.-| +|.+.+.-.-..=.|-++++.. +.-..=..|..+
T Consensus 45 ~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p~eItL~dVi~av-Eg~~~~~~C~~~ 114 (159)
T 3lwf_A 45 ISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGAHGGYVLNGDPEKITAGDIIRTL-EGPIVLVESMED 114 (159)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECSTTCEEEECSCTTTCBHHHHHHHH-SCCCCSCCCCTT
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCCCCceEecCCHHHCCHHHHHHHH-cCCCcccccCCC
Confidence 457899999999999999987 445565555555 5788887766666667777653 332222345443
No 172
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.22 E-value=66 Score=21.16 Aligned_cols=28 Identities=18% Similarity=0.445 Sum_probs=15.9
Q ss_pred ccccCCCCCCcc--eeEecCceeecccccc
Q psy7490 125 YVTCHTCRSPDT--ILQKDTRLFFLQCETC 152 (193)
Q Consensus 125 YVlC~~C~sPdT--~L~k~~rl~~l~C~aC 152 (193)
-..|..|+.|=+ .+.-.++.|...|=.|
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C 44 (79)
T 1x62_A 15 LPMCDKCGTGIVGVFVKLRDRHRHPECYVC 44 (79)
T ss_dssp CCCCSSSCCCCCSSCEECSSCEECTTTTSC
T ss_pred CCccccCCCCccCcEEEECcceeCcCcCee
Confidence 357888887533 3333566665544444
No 173
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=20.11 E-value=1.3e+02 Score=18.48 Aligned_cols=23 Identities=9% Similarity=0.060 Sum_probs=20.3
Q ss_pred ccHHHHHHcCCChHHHHHHHHHh
Q psy7490 68 NFTEICKTLHRLPKHLLDFLLAE 90 (193)
Q Consensus 68 Nf~dIak~L~R~p~hv~ky~~~E 90 (193)
++.++|+.|+.++..|.+++-..
T Consensus 15 s~~~~A~~lgis~~~vs~~~~~~ 37 (67)
T 2pij_A 15 TQSALAAALGVNQSAISQMVRAG 37 (67)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHTT
T ss_pred CHHHHHHHHCcCHHHHHHHHcCC
Confidence 68899999999999999999544
No 174
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.03 E-value=1.2e+02 Score=19.45 Aligned_cols=28 Identities=29% Similarity=0.708 Sum_probs=16.1
Q ss_pred cccCCCCCCc----ceeEecCceeeccccccc
Q psy7490 126 VTCHTCRSPD----TILQKDTRLFFLQCETCG 153 (193)
Q Consensus 126 VlC~~C~sPd----T~L~k~~rl~~l~C~aCG 153 (193)
..|..|+.|= ..+.-.++.|...|=.|.
T Consensus 12 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~ 43 (77)
T 1g47_A 12 ATCERCKGGFAPAEKIVNSNGELYHEQCFVCA 43 (77)
T ss_dssp CBCSSSCCBCCSTTTCEEETTEEECTTTCCCT
T ss_pred CCchhcCCccCCCceEEEeCccEeccccCeEC
Confidence 4688888643 233456666665554443
Done!