RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7490
         (193 letters)



>d1neea1 d.241.1.1 (A:1-98) Translation initiation factor 2 beta,
           aIF2beta, N-terminal domain {Archaeon Methanobacterium
           thermoautotrophicum [TaxId: 145262]}
          Length = 98

 Score =  124 bits (314), Expect = 3e-38
 Identities = 35/102 (34%), Positives = 55/102 (53%), Gaps = 7/102 (6%)

Query: 23  YEELLSRVFEIMREKNPDMVAGKKQKFVMRPPQVVRIGTKKTSFANFTEICKTLHRLPKH 82
           YE+LL R  + +    P  V   K +F +     V  G  +T   NF E+   L+R P+H
Sbjct: 4   YEKLLERAIDQL----PPEVFETK-RFEVPKAYSVIQG-NRTFIQNFREVADALNRDPQH 57

Query: 83  LLDFLLAELGTSGSVDGNSQLIIKGRFQQKQIENVLRRYIKE 124
           LL FLL ELGT+G+++G  + I++G+F    I   +  Y+ +
Sbjct: 58  LLKFLLRELGTAGNLEGG-RAILQGKFTHFLINERIEDYVNK 98


>d1k8ba_ d.241.1.1 (A:) Translation initiation factor 2 beta,
           aIF2beta, N-terminal domain {Archaeon Methanococcus
           jannaschii [TaxId: 2190]}
          Length = 52

 Score = 75.8 bits (187), Expect = 2e-19
 Identities = 16/54 (29%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 55  QVVRIGTKKTSFANFTEICKTLHRLPKHLLDFLLAELGTSGSVDGNSQLIIKGR 108
           +++  G  +T   NF E+ K ++R  +    +LL E G++G+++G  +LI++ R
Sbjct: 1   EILIEG-NRTIIRNFRELAKAVNRDEEFFAKYLLKETGSAGNLEGG-RLILQRR 52


>d1neea2 g.59.1.1 (A:99-135) Zinc-binding domain of translation
           initiation factor 2 beta {Archaeon Methanobacterium
           thermoautotrophicum [TaxId: 145262]}
          Length = 37

 Score = 65.8 bits (161), Expect = 9e-16
 Identities = 13/37 (35%), Positives = 24/37 (64%)

Query: 125 YVTCHTCRSPDTILQKDTRLFFLQCETCGSRCSVASI 161
           +V CH C  PDT + ++ R+  L+CE CG++  + ++
Sbjct: 1   FVICHECNRPDTRIIREGRISLLKCEACGAKAPLKNV 37


>d1k81a_ g.59.1.1 (A:) Zinc-binding domain of translation initiation
           factor 2 beta {Archaeon Methanococcus jannaschii [TaxId:
           2190]}
          Length = 36

 Score = 62.8 bits (153), Expect = 1e-14
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 126 VTCHTCRSPDTILQKDTRLFFLQCETCGSRCSVASI 161
           V C  C  PDT + K+ R+  L+C  CG+   +  I
Sbjct: 1   VICRECGKPDTKIIKEGRVHLLKCMACGAIRPIRMI 36


>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of
          gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}
          Length = 514

 Score = 27.6 bits (60), Expect = 1.2
 Identities = 9/39 (23%), Positives = 17/39 (43%)

Query: 5  QELEDESHTWIGSDRDYTYEELLSRVFEIMREKNPDMVA 43
           E E        +  +Y  ++ + ++FE    K P+ VA
Sbjct: 3  HEEEQYLFAVNNTKAEYPRDKTIHQLFEEQVSKRPNNVA 41


>d1m6ba3 g.3.9.1 (A:166-310) Receptor protein-tyrosine kinase Erbb-3
           Cys-rich domains {Human (Homo sapiens) [TaxId: 9606]}
          Length = 145

 Score = 25.9 bits (55), Expect = 2.4
 Identities = 8/57 (14%), Positives = 14/57 (24%), Gaps = 5/57 (8%)

Query: 128 CHTCRSPDTILQKDTRLFFLQCETCGSRCSVASIKSGFQKDTRLFFLQCETCGSRCS 184
               +     +      F +   +C   C          +  +     CE CG  C 
Sbjct: 93  HTKYQYGGVCVASCPHNFVVDQTSCVRACP-----PDKMEVDKNGLKMCEPCGGLCP 144


>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 579

 Score = 24.7 bits (53), Expect = 8.0
 Identities = 7/19 (36%), Positives = 11/19 (57%)

Query: 79  LPKHLLDFLLAELGTSGSV 97
           +   LLD L+  +G+  SV
Sbjct: 552 IEPTLLDELICHIGSLASV 570


>d2p06a1 a.204.1.3 (A:1-84) Hypothetical protein AF0060
          {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 84

 Score = 23.5 bits (50), Expect = 9.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)

Query: 20 DYTYEELLSRVFEIMRE 36
          D++ E LLSR+FE M E
Sbjct: 34 DFSEERLLSRLFEEMDE 50


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.136    0.406 

Gapped
Lambda     K      H
   0.267   0.0500    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 722,215
Number of extensions: 33751
Number of successful extensions: 127
Number of sequences better than 10.0: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 16
Length of query: 193
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 112
Effective length of database: 1,295,466
Effective search space: 145092192
Effective search space used: 145092192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.6 bits)