BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy75
(120 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 15/23 (65%), Positives = 19/23 (82%)
Query: 59 LEGHDRGVNWACFHPTLPLIVSG 81
LEGH V++A FHPTLP+I+SG
Sbjct: 224 LEGHMSNVSFAVFHPTLPIIISG 246
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 15/23 (65%), Positives = 19/23 (82%)
Query: 59 LEGHDRGVNWACFHPTLPLIVSG 81
LEGH V++A FHPTLP+I+SG
Sbjct: 224 LEGHMSNVSFAVFHPTLPIIISG 246
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 19/24 (79%)
Query: 58 VLEGHDRGVNWACFHPTLPLIVSG 81
LEGH V++A FHPTLP+I+SG
Sbjct: 223 TLEGHMSNVSFAVFHPTLPIIISG 246
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 19/24 (79%)
Query: 58 VLEGHDRGVNWACFHPTLPLIVSG 81
LEGH V++A FHPTLP+I+SG
Sbjct: 223 TLEGHMSNVSFAVFHPTLPIIISG 246
>pdb|4DNR|A Chain A, Crystal Structure Of The Cusba Heavy-metal Efflux Complex
From Escherichia Coli, E716f Mutant
Length = 1054
Score = 32.0 bits (71), Expect = 0.097, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 52 DAVVKHVLEGHDRGVNWACFHPTLPLIVSGKGLCLLDH----GPNLFPVVLDSSDFFVPI 107
DA + + H R W HP L + + D GP LF +L + F+PI
Sbjct: 412 DAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLIITLSFIPI 471
Query: 108 AKLEKREGR 116
LE +EGR
Sbjct: 472 FTLEGQEGR 480
>pdb|4DOP|A Chain A, Crystal Structure Of The Cusba Heavy-Metal Efflux Complex
From Escherichia Coli, R Mutant
Length = 1054
Score = 32.0 bits (71), Expect = 0.097, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 52 DAVVKHVLEGHDRGVNWACFHPTLPLIVSGKGLCLLDH----GPNLFPVVLDSSDFFVPI 107
DA + + H R W HP L + + D GP LF +L + F+PI
Sbjct: 412 DAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLIITLSFIPI 471
Query: 108 AKLEKREGR 116
LE +EGR
Sbjct: 472 FTLEGQEGR 480
>pdb|3T51|A Chain A, Crystal Structures Of The Pre-Extrusion And Extrusion
States Of The Cusba Adaptor-Transporter Complex
pdb|3T53|A Chain A, Crystal Structures Of The Extrusion State Of The Cusba
Adaptor- Transporter Complex
pdb|3T56|A Chain A, Crystal Structure Of The Pre-Extrusion State Of The Cusba
Adaptor- Transporter Complex
Length = 1054
Score = 32.0 bits (71), Expect = 0.097, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 52 DAVVKHVLEGHDRGVNWACFHPTLPLIVSGKGLCLLDH----GPNLFPVVLDSSDFFVPI 107
DA + + H R W HP L + + D GP LF +L + F+PI
Sbjct: 412 DAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLIITLSFIPI 471
Query: 108 AKLEKREGR 116
LE +EGR
Sbjct: 472 FTLEGQEGR 480
>pdb|3NE5|A Chain A, Crystal Structure Of The Cusba Heavy-Metal Efflux Complex
From Escherichia Coli
Length = 1054
Score = 32.0 bits (71), Expect = 0.097, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 52 DAVVKHVLEGHDRGVNWACFHPTLPLIVSGKGLCLLDH----GPNLFPVVLDSSDFFVPI 107
DA + + H R W HP L + + D GP LF +L + F+PI
Sbjct: 412 DAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLIITLSFIPI 471
Query: 108 AKLEKREGR 116
LE +EGR
Sbjct: 472 FTLEGQEGR 480
>pdb|3K07|A Chain A, Crystal Structure Of Cusa
pdb|3KSO|A Chain A, Structure And Mechanism Of The Heavy Metal Transporter
Cusa
pdb|3KSS|A Chain A, Structure And Mechanism Of The Heavy Metal Transporter
Cusa
pdb|3K0I|A Chain A, Crystal Structure Of Cu(I)cusa
Length = 1055
Score = 32.0 bits (71), Expect = 0.097, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 52 DAVVKHVLEGHDRGVNWACFHPTLPLIVSGKGLCLLDH----GPNLFPVVLDSSDFFVPI 107
DA + + H R W HP L + + D GP LF +L + F+PI
Sbjct: 413 DAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLIITLSFIPI 472
Query: 108 AKLEKREGR 116
LE +EGR
Sbjct: 473 FTLEGQEGR 481
>pdb|1VI1|A Chain A, Crystal Structure Of A Fatty AcidPHOSPHOLIPID SYNTHESIS
PROTEIN
pdb|1VI1|B Chain B, Crystal Structure Of A Fatty AcidPHOSPHOLIPID SYNTHESIS
PROTEIN
Length = 345
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 61 GHDRGVNWACFHPTLPLIVSGKGLCLLDHGPNL 93
G +G++ PTLP VSG G LLD G N+
Sbjct: 115 GRIKGIDRPALAPTLP-TVSGDGFLLLDVGANV 146
>pdb|4DNT|A Chain A, Crystal Structure Of The Cusba Heavy-Metal Efflux Complex
From Escherichia Coli, Mutant
Length = 1054
Score = 29.3 bits (64), Expect = 0.53, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 53 AVVKHVLEGHDRGVNWACFHPTLPLIVSGKGLCLLDH----GPNLFPVVLDSSDFFVPIA 108
A + + H R W HP L + + D GP LF +L + F+PI
Sbjct: 413 AAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLIITLSFIPIF 472
Query: 109 KLEKREGR 116
LE +EGR
Sbjct: 473 TLEGQEGR 480
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 28.9 bits (63), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 53 AVVKHVLEGHDRGVNWACFHPTLPLIVSGKGLCLLDHGPNLFPVVLD 99
AV+K +LE +W H TL + S KGL L+D + ++ D
Sbjct: 246 AVLKSILED-----DWGTAHYTLNKVRSAKGLALIDLIEGIVKILED 287
>pdb|1YB2|A Chain A, Structure Of A Putative Methyltransferase From
Thermoplasma Acidophilum
Length = 275
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 44 STDLFGQADAVVKHVL---EGHDRGVNWACFHPTLPLIVSGKGLCLLDHGPNLFPVVL 98
S D +G+ D +L + H G++ P LIVSGK + D P F V+
Sbjct: 31 SEDEYGKFDESTNSILVKGKXHHLGIS-RVIEPGDELIVSGKSFIVSDFSPXYFGRVI 87
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 25.0 bits (53), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 26/84 (30%)
Query: 33 GGLEEHLRNPSSTDLFGQADAVVKHVLEGHDRGVNWACFHPTLPLIV------------- 79
GGL LR P T LEGH + V +HPT ++
Sbjct: 114 GGLVLPLREPVIT-------------LEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWD 160
Query: 80 SGKGLCLLDHGPNLFPVVLDSSDF 103
G G +L GP++ P + S D+
Sbjct: 161 VGTGAAVLTLGPDVHPDTIYSVDW 184
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,006,317
Number of Sequences: 62578
Number of extensions: 157171
Number of successful extensions: 315
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 306
Number of HSP's gapped (non-prelim): 20
length of query: 120
length of database: 14,973,337
effective HSP length: 82
effective length of query: 38
effective length of database: 9,841,941
effective search space: 373993758
effective search space used: 373993758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)