BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy75
(120 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q27954|COPA_BOVIN Coatomer subunit alpha OS=Bos taurus GN=COPA PE=1 SV=1
Length = 1224
Score = 90.5 bits (223), Expect = 3e-18, Method: Composition-based stats.
Identities = 41/59 (69%), Positives = 47/59 (79%), Gaps = 2/59 (3%)
Query: 23 LRKKNVAPGMGGLEEHLRNPSSTDLFGQADAVVKHVLEGHDRGVNWACFHPTLPLIVSG 81
LRKKN++PG +E +R + DLFG DAVVKHVLEGHDRGVNWA FHPT+PLIVSG
Sbjct: 167 LRKKNLSPG--AVESDVRGITGVDLFGTTDAVVKHVLEGHDRGVNWAAFHPTMPLIVSG 223
>sp|P53621|COPA_HUMAN Coatomer subunit alpha OS=Homo sapiens GN=COPA PE=1 SV=2
Length = 1224
Score = 90.5 bits (223), Expect = 3e-18, Method: Composition-based stats.
Identities = 41/59 (69%), Positives = 47/59 (79%), Gaps = 2/59 (3%)
Query: 23 LRKKNVAPGMGGLEEHLRNPSSTDLFGQADAVVKHVLEGHDRGVNWACFHPTLPLIVSG 81
LRKKN++PG +E +R + DLFG DAVVKHVLEGHDRGVNWA FHPT+PLIVSG
Sbjct: 167 LRKKNLSPG--AVESDVRGITGVDLFGTTDAVVKHVLEGHDRGVNWAAFHPTMPLIVSG 223
>sp|Q8CIE6|COPA_MOUSE Coatomer subunit alpha OS=Mus musculus GN=Copa PE=1 SV=2
Length = 1224
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/77 (58%), Positives = 56/77 (72%), Gaps = 4/77 (5%)
Query: 7 LVLSSTPDHHHK--QNAQLRKKNVAPGMGGLEEHLRNPSSTDLFGQADAVVKHVLEGHDR 64
LV+S++ D + + LRKKN++PG +E +R + DLFG DAVVKHVLEGHDR
Sbjct: 149 LVVSASLDQTVRVWDISGLRKKNLSPG--AVESDVRGITGVDLFGTTDAVVKHVLEGHDR 206
Query: 65 GVNWACFHPTLPLIVSG 81
GVNWA FHPT+PLIVSG
Sbjct: 207 GVNWAAFHPTMPLIVSG 223
>sp|Q96WV5|COPA_SCHPO Putative coatomer subunit alpha OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBPJ4664.04 PE=1 SV=1
Length = 1207
Score = 80.5 bits (197), Expect = 3e-15, Method: Composition-based stats.
Identities = 39/62 (62%), Positives = 42/62 (67%), Gaps = 3/62 (4%)
Query: 23 LRKKNVAPGMGGLEEHL---RNPSSTDLFGQADAVVKHVLEGHDRGVNWACFHPTLPLIV 79
LR KN AP LE+ L N S DLFG DA+VK VLEGHDRGVNW FHPTLPLI+
Sbjct: 169 LRMKNAAPVSMSLEDQLAQAHNSISNDLFGSTDAIVKFVLEGHDRGVNWCAFHPTLPLIL 228
Query: 80 SG 81
S
Sbjct: 229 SA 230
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 59 LEGHDRGVNWACFHPTLPLIVSG 81
+GHD V FHPT PL VSG
Sbjct: 49 FDGHDGPVRGIAFHPTQPLFVSG 71
>sp|Q9AUR7|COPA2_ORYSJ Coatomer subunit alpha-2 OS=Oryza sativa subsp. japonica
GN=Os03g0711500 PE=2 SV=1
Length = 1218
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/78 (57%), Positives = 56/78 (71%), Gaps = 7/78 (8%)
Query: 7 LVLSSTPDHHHK--QNAQLRKKNVAPGMGGLEEHLR-NPSSTDLFGQADAVVKHVLEGHD 63
LV+S++ D + + LRKK+V+P ++ LR +TDLFG DAVVK+VLEGHD
Sbjct: 149 LVVSASLDQTVRVWDISALRKKSVSPA----DDILRLTQMNTDLFGGVDAVVKYVLEGHD 204
Query: 64 RGVNWACFHPTLPLIVSG 81
RGVNWA FHPTLPLIVSG
Sbjct: 205 RGVNWASFHPTLPLIVSG 222
>sp|Q0J3D9|COPA3_ORYSJ Coatomer subunit alpha-3 OS=Oryza sativa subsp. japonica
GN=Os09g0127800 PE=2 SV=1
Length = 1218
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/78 (57%), Positives = 54/78 (69%), Gaps = 7/78 (8%)
Query: 7 LVLSSTPDHHHK--QNAQLRKKNVAPGMGGLEEHLR-NPSSTDLFGQADAVVKHVLEGHD 63
LV+S++ D + LRKK V+P ++ LR +TDLFG DAVVK+VLEGHD
Sbjct: 149 LVVSASLDQTVRVWDIGALRKKTVSPA----DDILRLTQMNTDLFGGVDAVVKYVLEGHD 204
Query: 64 RGVNWACFHPTLPLIVSG 81
RGVNWA FHPTLPLIVSG
Sbjct: 205 RGVNWASFHPTLPLIVSG 222
>sp|Q9AUR8|COPA1_ORYSJ Coatomer subunit alpha-1 OS=Oryza sativa subsp. japonica
GN=Os03g0711400 PE=2 SV=1
Length = 1218
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/78 (57%), Positives = 54/78 (69%), Gaps = 7/78 (8%)
Query: 7 LVLSSTPDHHHK--QNAQLRKKNVAPGMGGLEEHLR-NPSSTDLFGQADAVVKHVLEGHD 63
LV+S++ D + LRKK V+P ++ LR +TDLFG DAVVK+VLEGHD
Sbjct: 149 LVVSASLDQTVRVWDIGALRKKTVSPA----DDILRLTQMNTDLFGGVDAVVKYVLEGHD 204
Query: 64 RGVNWACFHPTLPLIVSG 81
RGVNWA FHPTLPLIVSG
Sbjct: 205 RGVNWASFHPTLPLIVSG 222
>sp|Q94A40|COPA1_ARATH Coatomer subunit alpha-1 OS=Arabidopsis thaliana GN=At1g62020 PE=1
SV=2
Length = 1216
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 54/78 (69%), Gaps = 7/78 (8%)
Query: 7 LVLSSTPDHHHK--QNAQLRKKNVAPGMGGLEEHLR-NPSSTDLFGQADAVVKHVLEGHD 63
LV+S++ D + LRKK V+P ++ +R ++DLFG DA+VK+VLEGHD
Sbjct: 149 LVVSASLDQTVRVWDIGALRKKTVSPA----DDIMRLTQMNSDLFGGVDAIVKYVLEGHD 204
Query: 64 RGVNWACFHPTLPLIVSG 81
RGVNWA FHPTLPLIVSG
Sbjct: 205 RGVNWAAFHPTLPLIVSG 222
>sp|Q9SJT9|COPA2_ARATH Coatomer subunit alpha-2 OS=Arabidopsis thaliana GN=At2g21390 PE=2
SV=1
Length = 1218
Score = 75.9 bits (185), Expect = 7e-14, Method: Composition-based stats.
Identities = 36/60 (60%), Positives = 47/60 (78%), Gaps = 5/60 (8%)
Query: 23 LRKKNVAPGMGGLEEHLR-NPSSTDLFGQADAVVKHVLEGHDRGVNWACFHPTLPLIVSG 81
L+KK+ +P ++ +R + ++DLFG DA+VK+VLEGHDRGVNWA FHPTLPLIVSG
Sbjct: 167 LKKKSASPA----DDLMRFSQMNSDLFGGVDAIVKYVLEGHDRGVNWASFHPTLPLIVSG 222
>sp|P53622|COPA_YEAST Coatomer subunit alpha OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=COP1 PE=1 SV=2
Length = 1201
Score = 70.5 bits (171), Expect = 3e-12, Method: Composition-based stats.
Identities = 33/59 (55%), Positives = 38/59 (64%)
Query: 23 LRKKNVAPGMGGLEEHLRNPSSTDLFGQADAVVKHVLEGHDRGVNWACFHPTLPLIVSG 81
LRK++ APG EE + + D VVK +LEGH RGVNWA FHPTLPLIVSG
Sbjct: 169 LRKRHSAPGTSSFEEQMSAQQNLLDGSLGDCVVKFILEGHTRGVNWASFHPTLPLIVSG 227
>sp|Q55FR9|COPA_DICDI Coatomer subunit alpha OS=Dictyostelium discoideum GN=copa PE=3
SV=1
Length = 1221
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/36 (66%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Query: 46 DLFGQADAVVKHVLEGHDRGVNWACFHPTLPLIVSG 81
+LFG D V+ LEGHDRGVNWA FHPT P IVS
Sbjct: 188 ELFG-TDISVRLSLEGHDRGVNWASFHPTQPYIVSA 222
>sp|P41811|COPB2_YEAST Coatomer subunit beta' OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SEC27 PE=1 SV=1
Length = 889
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 15/23 (65%), Positives = 19/23 (82%)
Query: 59 LEGHDRGVNWACFHPTLPLIVSG 81
LEGH V++A FHPTLP+I+SG
Sbjct: 224 LEGHMSNVSFAVFHPTLPIIISG 246
>sp|Q54YD8|COPB2_DICDI Coatomer subunit beta' OS=Dictyostelium discoideum GN=copb2 PE=3
SV=1
Length = 1005
Score = 37.0 bits (84), Expect = 0.033, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 57 HVLEGHDRGVNWACFHPTLPLIVSG 81
LEGH V+ C+HP LPLI+SG
Sbjct: 224 QTLEGHSNNVSVVCYHPELPLILSG 248
>sp|Q9C827|COB22_ARATH Coatomer subunit beta'-2 OS=Arabidopsis thaliana GN=At1g52360 PE=2
SV=1
Length = 926
Score = 37.0 bits (84), Expect = 0.036, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 57 HVLEGHDRGVNWACFHPTLPLIVSG 81
LEGH V+ CFHP LP+I++G
Sbjct: 223 QTLEGHTHNVSAVCFHPELPIIITG 247
>sp|Q5VQ78|COB21_ORYSJ Coatomer subunit beta'-1 OS=Oryza sativa subsp. japonica
GN=Os06g0143900 PE=2 SV=1
Length = 907
Score = 36.6 bits (83), Expect = 0.051, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 57 HVLEGHDRGVNWACFHPTLPLIVSG 81
LEGH ++ CFHP LP+I++G
Sbjct: 223 QTLEGHTHNISAVCFHPELPIIITG 247
>sp|Q20168|COPB2_CAEEL Probable coatomer subunit beta' OS=Caenorhabditis elegans
GN=F38E11.5 PE=3 SV=3
Length = 1000
Score = 36.2 bits (82), Expect = 0.054, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 32 MGGLEEHLRNPSSTDLFGQADAVVKHVLEGHDRGVNWACFHPTLPLIVSG 81
+ G ++HL ++ + L+GH + V+ CFHP LPLI++G
Sbjct: 203 ISGADDHL-----VKIWDYQNKTCVQTLDGHAQNVSSVCFHPELPLIITG 247
>sp|Q6H8D6|COB23_ORYSJ Putative coatomer subunit beta'-3 OS=Oryza sativa subsp. japonica
GN=Os02g0209000 PE=3 SV=2
Length = 910
Score = 35.8 bits (81), Expect = 0.073, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 57 HVLEGHDRGVNWACFHPTLPLIVSG 81
LEGH V+ CFHP LP+I++G
Sbjct: 223 QTLEGHAHNVSAVCFHPELPIILTG 247
>sp|Q8L828|COB23_ARATH Coatomer subunit beta'-3 OS=Arabidopsis thaliana GN=At3g15980 PE=2
SV=1
Length = 909
Score = 35.4 bits (80), Expect = 0.096, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 57 HVLEGHDRGVNWACFHPTLPLIVSG 81
L+GH V+ CFHP LP+I++G
Sbjct: 223 QTLDGHTHNVSAVCFHPELPIIITG 247
>sp|O62621|COPB2_DROME Coatomer subunit beta' OS=Drosophila melanogaster GN=beta'Cop PE=2
SV=2
Length = 914
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 57 HVLEGHDRGVNWACFHPTLPLIVSG 81
LEGH + ++ CFHP LP++++G
Sbjct: 223 QTLEGHAQNISAVCFHPELPIVLTG 247
>sp|Q5R664|COPB2_PONAB Coatomer subunit beta' OS=Pongo abelii GN=COPB2 PE=2 SV=1
Length = 906
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 57 HVLEGHDRGVNWACFHPTLPLIVSG 81
LEGH + V+ A FHP LP+I++G
Sbjct: 223 QTLEGHAQNVSCASFHPELPIIITG 247
>sp|O55029|COPB2_MOUSE Coatomer subunit beta' OS=Mus musculus GN=Copb2 PE=2 SV=2
Length = 905
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 57 HVLEGHDRGVNWACFHPTLPLIVSG 81
LEGH + V+ A FHP LP+I++G
Sbjct: 223 QTLEGHAQNVSCASFHPELPIIITG 247
>sp|Q4R4I8|COPB2_MACFA Coatomer subunit beta' OS=Macaca fascicularis GN=COPB2 PE=2 SV=1
Length = 906
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 57 HVLEGHDRGVNWACFHPTLPLIVSG 81
LEGH + V+ A FHP LP+I++G
Sbjct: 223 QTLEGHAQNVSCASFHPELPIIITG 247
>sp|P35606|COPB2_HUMAN Coatomer subunit beta' OS=Homo sapiens GN=COPB2 PE=1 SV=2
Length = 906
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 57 HVLEGHDRGVNWACFHPTLPLIVSG 81
LEGH + V+ A FHP LP+I++G
Sbjct: 223 QTLEGHAQNVSCASFHPELPIIITG 247
>sp|P35605|COPB2_BOVIN Coatomer subunit beta' OS=Bos taurus GN=COPB2 PE=1 SV=3
Length = 906
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 57 HVLEGHDRGVNWACFHPTLPLIVSG 81
LEGH + V+ A FHP LP+I++G
Sbjct: 223 QTLEGHAQNVSCASFHPELPIIITG 247
>sp|Q6H8D5|COB22_ORYSJ Coatomer subunit beta'-2 OS=Oryza sativa subsp. japonica
GN=Os02g0209100 PE=2 SV=1
Length = 910
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 57 HVLEGHDRGVNWACFHPTLPLIVSG 81
LEGH V+ CFHP LP+ ++G
Sbjct: 223 QTLEGHAHNVSAVCFHPELPITLTG 247
>sp|O42937|COPB2_SCHPO Probable coatomer subunit beta' OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sec27 PE=3 SV=2
Length = 796
Score = 33.9 bits (76), Expect = 0.34, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 50 QADAVVKHVLEGHDRGVNWACFHPTLPLIVSG 81
Q A V+ +LEGH V++A FH P+I+SG
Sbjct: 216 QTKACVR-ILEGHTNNVSFAFFHSKFPIIISG 246
>sp|O35142|COPB2_RAT Coatomer subunit beta' OS=Rattus norvegicus GN=Copb2 PE=1 SV=3
Length = 905
Score = 33.1 bits (74), Expect = 0.46, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 60 EGHDRGVNWACFHPTLPLIVSG 81
EGH + V+ A FHP LP+I++G
Sbjct: 226 EGHAQNVSCATFHPELPIIITG 247
>sp|Q6F1N6|PLSX_MESFL Phosphate acyltransferase OS=Mesoplasma florum (strain ATCC 33453 /
NBRC 100688 / NCTC 11704 / L1) GN=plsX PE=3 SV=1
Length = 331
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 57 HVLEGHDRGVNWACFHPTLPLIVSGKGLCLLDHGPNL 93
H + G G++ F PTLP VS K LLD G NL
Sbjct: 112 HFILGELNGISRPGFMPTLPTAVSNKLTLLLDVGANL 148
>sp|Q9CAA0|COB21_ARATH Coatomer subunit beta'-1 OS=Arabidopsis thaliana GN=At1g79990 PE=2
SV=2
Length = 920
Score = 33.1 bits (74), Expect = 0.57, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 57 HVLEGHDRGVNWACFHPTLPLIVSG 81
LEGH V+ FHP LP+I++G
Sbjct: 223 QTLEGHTHNVSAVSFHPELPIIITG 247
>sp|P38054|CUSA_ECOLI Cation efflux system protein CusA OS=Escherichia coli (strain K12)
GN=cusA PE=1 SV=2
Length = 1047
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 52 DAVVKHVLEGHDRGVNWACFHPTLPLIVSGKGLCLLDH----GPNLFPVVLDSSDFFVPI 107
DA + + H R W HP L + + D GP LF +L + F+PI
Sbjct: 405 DAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLIITLSFIPI 464
Query: 108 AKLEKREGR 116
LE +EGR
Sbjct: 465 FTLEGQEGR 473
>sp|Q8FK36|CUSA_ECOL6 Cation efflux system protein CusA OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=cusA PE=3 SV=1
Length = 1047
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 52 DAVVKHVLEGHDRGVNWACFHPTLPLIVSGKGLCLLDH----GPNLFPVVLDSSDFFVPI 107
DA + + H R W HP L + + D GP LF +L + F+PI
Sbjct: 405 DAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLIITLSFIPI 464
Query: 108 AKLEKREGR 116
LE +EGR
Sbjct: 465 FTLEGQEGR 473
>sp|D3BUN1|LIS1_POLPA Lissencephaly-1 homolog OS=Polysphondylium pallidum PE=3 SV=1
Length = 417
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 13/70 (18%)
Query: 22 QLRKK--NVAPGMGGLEEHLRN----PSSTDLFGQADAVV----KHVLEGHDRGVNWACF 71
+L+KK ++ + LEE L N P+ G+ DA+ KHVL GH +N F
Sbjct: 56 RLQKKVMDLEAKVSQLEEELNNGGRGPARR---GKEDALPRQPEKHVLTGHRNCINAVRF 112
Query: 72 HPTLPLIVSG 81
HP +IVS
Sbjct: 113 HPLFSVIVSA 122
>sp|Q2UGU1|LIS1_ASPOR Nuclear distribution protein nudF OS=Aspergillus oryzae (strain
ATCC 42149 / RIB 40) GN=nudF PE=3 SV=2
Length = 455
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 53 AVVKHVLEGHDRGVNWACFHPTLPLIVSGKGLCLL 87
+ V++ LE H VN FHPT I SG C +
Sbjct: 105 STVRYSLESHRDKVNCVAFHPTFSSIASGSDDCTI 139
>sp|B8N9H4|LIS1_ASPFN Nuclear distribution protein nudF OS=Aspergillus flavus (strain
ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC
167) GN=nudF PE=3 SV=2
Length = 455
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 53 AVVKHVLEGHDRGVNWACFHPTLPLIVSGKGLCLL 87
+ V++ LE H VN FHPT I SG C +
Sbjct: 105 STVRYSLESHRDKVNCVAFHPTFSSIASGSDDCTI 139
>sp|A0AUS0|WSDU1_DANRE WD repeat, SAM and U-box domain-containing protein 1 OS=Danio rerio
GN=wdsub1 PE=2 SV=1
Length = 487
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 50 QAD-AVVKHVLEGHDRGVNWACFHPTLPLIVSG 81
QAD V+ + L HDR V F PT PLI +G
Sbjct: 267 QADEGVLLYTLHQHDRYVTACAFSPTAPLIATG 299
>sp|Q8I0F4|LIS1_DICDI Lissencephaly-1 homolog OS=Dictyostelium discoideum GN=lis1 PE=1
SV=1
Length = 419
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 56 KHVLEGHDRGVNWACFHPTLPLIVSG 81
KH+L GH +N FHP+ L+VS
Sbjct: 99 KHILTGHRNCINSVKFHPSFSLMVSA 124
>sp|Q8XBY1|CUSA_ECO57 Cation efflux system protein CusA OS=Escherichia coli O157:H7
GN=cusA PE=3 SV=1
Length = 1045
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 52 DAVVKHVLEGHDRGVNWACFHPTLPLIVSGKGLCL----LDHGPNLFPVVLDSSDFFVPI 107
DA + + H R W HP L + + ++ GP LF +L + F+PI
Sbjct: 403 DAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITNASVEVGPALFISLLIITLSFIPI 462
Query: 108 AKLEKREGR 116
LE +EGR
Sbjct: 463 FTLEGQEGR 471
>sp|C5FWH1|LIS1_ARTOC Nuclear distribution protein PAC1 OS=Arthroderma otae (strain ATCC
MYA-4605 / CBS 113480) GN=PAC1 PE=3 SV=1
Length = 461
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 53 AVVKHVLEGHDRGVNWACFHPTLPLIVSGKGLCLL 87
A +H LE H +N FHP I SG C +
Sbjct: 106 APARHALESHRDTINSVAFHPIFSSIASGSDDCTI 140
>sp|D5GBI7|LIS1_TUBMM Nuclear distribution protein PAC1 OS=Tuber melanosporum (strain
Mel28) GN=PAC1 PE=3 SV=1
Length = 452
Score = 30.0 bits (66), Expect = 5.0, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 53 AVVKHVLEGHDRGVNWACFHPTLPLIVSG 81
A KHVL H +N FHP ++ SG
Sbjct: 109 APAKHVLTSHRNSINSVAFHPIFSVLASG 137
>sp|B6QC56|LIS11_PENMQ Nuclear distribution protein nudF 1 OS=Penicillium marneffei
(strain ATCC 18224 / CBS 334.59 / QM 7333) GN=nudF-1
PE=3 SV=1
Length = 459
Score = 29.3 bits (64), Expect = 6.7, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 8/63 (12%)
Query: 33 GGLEEHLRNPSSTDLFGQ--------ADAVVKHVLEGHDRGVNWACFHPTLPLIVSGKGL 84
G L+ L N + T L + ++ LE H +N FHP I SG
Sbjct: 78 GALQTELNNATPTSLSKRNQDPASWLPKVPARYSLESHRNTINCLAFHPKFSSIASGSDD 137
Query: 85 CLL 87
C++
Sbjct: 138 CMI 140
>sp|A4IIX9|WDR37_XENTR WD repeat-containing protein 37 OS=Xenopus tropicalis GN=wdr37 PE=2
SV=1
Length = 494
Score = 28.9 bits (63), Expect = 9.2, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 44 STDLFGQADAVVKHVLEGHDRGVNWACFHPTLPLIVS 80
+ +L+ + + H L GHD+ + C HPT L+V+
Sbjct: 304 TANLYDVETSELVHSLTGHDQELTHCCTHPTQRLVVT 340
>sp|Q6DDF0|WDR37_XENLA WD repeat-containing protein 37 OS=Xenopus laevis GN=wdr37 PE=2
SV=1
Length = 495
Score = 28.9 bits (63), Expect = 9.2, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 44 STDLFGQADAVVKHVLEGHDRGVNWACFHPTLPLIVS 80
+ +L+ + + H L GHD+ + C HPT L+V+
Sbjct: 305 TANLYDVETSELVHSLTGHDQELTHCCTHPTQRLVVT 341
>sp|Q8CBE3|WDR37_MOUSE WD repeat-containing protein 37 OS=Mus musculus GN=Wdr37 PE=2 SV=1
Length = 496
Score = 28.9 bits (63), Expect = 9.2, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 44 STDLFGQADAVVKHVLEGHDRGVNWACFHPTLPLIVS 80
+ +L+ + + H L GHD+ + C HPT L+V+
Sbjct: 306 TANLYDVETSELVHSLTGHDQELTHCCTHPTQRLVVT 342
>sp|Q5R650|WDR37_PONAB WD repeat-containing protein 37 OS=Pongo abelii GN=WDR37 PE=2 SV=1
Length = 495
Score = 28.9 bits (63), Expect = 9.3, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 44 STDLFGQADAVVKHVLEGHDRGVNWACFHPTLPLIVS 80
+ +L+ + + H L GHD+ + C HPT L+V+
Sbjct: 305 TANLYDVETSELVHSLTGHDQELTHCCTHPTQRLVVT 341
>sp|Q9Y2I8|WDR37_HUMAN WD repeat-containing protein 37 OS=Homo sapiens GN=WDR37 PE=2 SV=2
Length = 494
Score = 28.9 bits (63), Expect = 9.3, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 44 STDLFGQADAVVKHVLEGHDRGVNWACFHPTLPLIVS 80
+ +L+ + + H L GHD+ + C HPT L+V+
Sbjct: 304 TANLYDVETSELVHSLTGHDQELTHCCTHPTQRLVVT 340
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.139 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,303,652
Number of Sequences: 539616
Number of extensions: 1990179
Number of successful extensions: 4137
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 4020
Number of HSP's gapped (non-prelim): 122
length of query: 120
length of database: 191,569,459
effective HSP length: 87
effective length of query: 33
effective length of database: 144,622,867
effective search space: 4772554611
effective search space used: 4772554611
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)