RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy75
         (120 letters)



>gnl|CDD|197651 smart00320, WD40, WD40 repeats.  Note that these repeats are
          permuted with respect to the structural repeats
          (blades) of the beta propeller domain.
          Length = 40

 Score = 31.1 bits (71), Expect = 0.016
 Identities = 8/27 (29%), Positives = 11/27 (40%)

Query: 55 VKHVLEGHDRGVNWACFHPTLPLIVSG 81
          +   L+GH   V    F P    + SG
Sbjct: 4  LLKTLKGHTGPVTSVAFSPDGKYLASG 30


>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat. 
          Length = 39

 Score = 30.4 bits (69), Expect = 0.024
 Identities = 9/28 (32%), Positives = 12/28 (42%)

Query: 54 VVKHVLEGHDRGVNWACFHPTLPLIVSG 81
           +   L+GH   V    F P   L+ SG
Sbjct: 2  KLLRTLKGHTGPVTSVAFSPDGNLLASG 29


>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic
           proteins that cover a wide variety of functions
           including adaptor/regulatory modules in signal
           transduction, pre-mRNA processing and cytoskeleton
           assembly; typically contains a GH dipeptide 11-24
           residues from its N-terminus and the WD dipeptide at its
           C-terminus and is 40 residues long, hence the name WD40;
           between GH and WD lies a conserved core; serves as a
           stable propeller-like platform to which proteins can
           bind either stably or reversibly; forms a propeller-like
           structure with several blades where each blade is
           composed of a four-stranded anti-parallel b-sheet;
           instances with few detectable copies are hypothesized to
           form larger structures by dimerization; each WD40
           sequence repeat forms the first three strands of one
           blade and the last strand in the next blade; the last
           C-terminal WD40 repeat completes the blade structure of
           the first WD40 repeat to create the closed ring
           propeller-structure; residues on the top and bottom
           surface of the propeller are proposed to coordinate
           interactions with other proteins and/or small ligands; 7
           copies of the repeat are present in this alignment.
          Length = 289

 Score = 32.7 bits (75), Expect = 0.027
 Identities = 8/27 (29%), Positives = 10/27 (37%)

Query: 55  VKHVLEGHDRGVNWACFHPTLPLIVSG 81
               L GH   VN   F P    ++S 
Sbjct: 169 CVATLTGHTGEVNSVAFSPDGEKLLSS 195



 Score = 30.0 bits (68), Expect = 0.27
 Identities = 7/25 (28%), Positives = 10/25 (40%)

Query: 57  HVLEGHDRGVNWACFHPTLPLIVSG 81
             L GH   V+   F P   ++ S 
Sbjct: 87  RTLTGHTSYVSSVAFSPDGRILSSS 111



 Score = 29.2 bits (66), Expect = 0.47
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 4/43 (9%)

Query: 43  SSTD----LFGQADAVVKHVLEGHDRGVNWACFHPTLPLIVSG 81
           SS+D    L+  +       L GH+ GVN   F P   L+ SG
Sbjct: 195 SSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASG 237



 Score = 28.8 bits (65), Expect = 0.67
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 56 KHVLEGHDRGVNWACFHPTLPLIVSG 81
          +  L+GH  GV    F P   L+ +G
Sbjct: 2  RRTLKGHTGGVTCVAFSPDGKLLATG 27



 Score = 25.8 bits (57), Expect = 6.0
 Identities = 8/27 (29%), Positives = 9/27 (33%)

Query: 56  KHVLEGHDRGVNWACFHPTLPLIVSGK 82
              L GH   VN   F P    + S  
Sbjct: 128 LTTLRGHTDWVNSVAFSPDGTFVASSS 154



 Score = 25.8 bits (57), Expect = 6.1
 Identities = 7/28 (25%), Positives = 9/28 (32%)

Query: 54  VVKHVLEGHDRGVNWACFHPTLPLIVSG 81
                L GH   V    + P    + SG
Sbjct: 252 ECVQTLSGHTNSVTSLAWSPDGKRLASG 279


>gnl|CDD|215155 PLN02275, PLN02275, transferase, transferring glycosyl groups.
          Length = 371

 Score = 27.7 bits (62), Expect = 1.5
 Identities = 10/32 (31%), Positives = 13/32 (40%)

Query: 52  DAVVKHVLEGHDRGVNWACFHPTLPLIVSGKG 83
           D  V   L   D        +P L  I++GKG
Sbjct: 239 DRRVAARLNESDSASGKQSLYPRLLFIITGKG 270


>gnl|CDD|182177 PRK09975, PRK09975, DNA-binding transcriptional regulator EnvR;
           Provisional.
          Length = 213

 Score = 27.4 bits (61), Expect = 1.7
 Identities = 11/21 (52%), Positives = 15/21 (71%)

Query: 39  LRNPSSTDLFGQADAVVKHVL 59
           L NP+  DL+ QA A+V +VL
Sbjct: 178 LMNPAGYDLYKQAPALVDNVL 198


>gnl|CDD|165086 PHA02713, PHA02713, hypothetical protein; Provisional.
          Length = 557

 Score = 26.5 bits (58), Expect = 4.7
 Identities = 12/41 (29%), Positives = 21/41 (51%)

Query: 49  GQADAVVKHVLEGHDRGVNWACFHPTLPLIVSGKGLCLLDH 89
           GQ    V+  +E +  G +     P +P+ +S  G+C+LD 
Sbjct: 359 GQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQ 399


>gnl|CDD|238381 cd00740, MeTr, MeTr subgroup of pterin binding enzymes. This family
           includes cobalamin-dependent methyltransferases such as
           methyltetrahydrofolate, corrinoid iron-sulfur protein
           methyltransferase (MeTr) and methionine synthase (MetH).
            Cobalamin-dependent methyltransferases catalyze the
           transfer of a methyl group via a methyl- cob(III)amide
           intermediate.  These include MeTr, a functional
           heterodimer, and the folate binding domain of MetH.
          Length = 252

 Score = 26.2 bits (58), Expect = 5.2
 Identities = 9/27 (33%), Positives = 18/27 (66%), Gaps = 1/27 (3%)

Query: 91  PNLFPVVLDSSDFFVPIAKLEKREGRA 117
           P + P++LDS+++ V  A L+  +G+ 
Sbjct: 69  PTV-PLMLDSTNWEVIEAGLKCCQGKC 94


>gnl|CDD|215585 PLN03115, PLN03115, ferredoxin--NADP(+) reductase; Provisional.
          Length = 367

 Score = 26.1 bits (57), Expect = 5.4
 Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 7/72 (9%)

Query: 17 HKQNAQLRKKNVAPGMGGLEEHLRNPSSTDLFGQADAVVKHVLEGHDRGVNWACFHPTLP 76
           K     R    +   G     +R   +T+   +A A V  V + ++ GV    F P  P
Sbjct: 34 KKGPLYYRNNVSS---GKRVVSIRAQVTTETTTEAPAKVVKVSKKNEEGVVVNKFRPKEP 90

Query: 77 LIVSGKGLCLLD 88
                G CLL+
Sbjct: 91 YT----GRCLLN 98


>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction
           only].
          Length = 466

 Score = 25.8 bits (55), Expect = 7.3
 Identities = 7/27 (25%), Positives = 11/27 (40%)

Query: 57  HVLEGHDRGVNWACFHPTLPLIVSGKG 83
             L GH   V+   F P   L+++   
Sbjct: 192 STLAGHTDPVSSLAFSPDGGLLIASGS 218


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.322    0.139    0.431 

Gapped
Lambda     K      H
   0.267   0.0728    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,235,692
Number of extensions: 536232
Number of successful extensions: 390
Number of sequences better than 10.0: 1
Number of HSP's gapped: 390
Number of HSP's successfully gapped: 26
Length of query: 120
Length of database: 10,937,602
Length adjustment: 83
Effective length of query: 37
Effective length of database: 7,256,220
Effective search space: 268480140
Effective search space used: 268480140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.2 bits)