RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy75
(120 letters)
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 35.9 bits (81), Expect = 5e-04
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 56 KHVLEGHDRGVNWACFHPTLPLIVSG 81
K+ L GH V FHP ++VS
Sbjct: 10 KYALSGHRSPVTRVIFHPVFSVMVSA 35
Score = 30.1 bits (66), Expect = 0.060
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 57 HVLEGHDRGVNWACFHPTLPLIVSG 81
L H+ V FH T P +V+G
Sbjct: 283 KTLNAHEHFVTSLDFHKTAPYVVTG 307
Score = 28.9 bits (63), Expect = 0.15
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 47 LFGQADAVVKHVLEGHDRGVNWACFHPTLPLIVSG 81
++ + + L GHD V FH I+S
Sbjct: 231 MWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSC 265
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 34.7 bits (78), Expect = 0.001
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 43 SSTDLFGQADAVVKHVLEGHDRGVNWACFHPTLPLIVSG 81
++ D G+ + L GH + + L+VS
Sbjct: 35 NNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSA 73
Score = 30.9 bits (68), Expect = 0.030
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 57 HVLEGHDRGVNWACFHPTLPLIVSG 81
VL GHD V+ + +G
Sbjct: 306 GVLAGHDNRVSCLGVTDDGMAVATG 330
Score = 30.1 bits (66), Expect = 0.048
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 55 VKHVLEGHDRGVNWACFHPTLPLIVSG 81
+ GH+ +N CF P +G
Sbjct: 218 CRQTFTGHESDINAICFFPNGNAFATG 244
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1
{Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 33.0 bits (73), Expect = 0.006
Identities = 4/27 (14%), Positives = 9/27 (33%)
Query: 55 VKHVLEGHDRGVNWACFHPTLPLIVSG 81
+ V GH++ + + S
Sbjct: 4 IDQVRYGHNKAITALSSSADGKTLFSA 30
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 371
Score = 30.2 bits (66), Expect = 0.045
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 54 VVKHVLEGHDRGVNWACFHPTLPLIVSG 81
V H L+ H+ V + P IV+
Sbjct: 42 VQVHELKEHNGQVTGVDWAPDSNRIVTC 69
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 29.1 bits (63), Expect = 0.14
Identities = 5/25 (20%), Positives = 7/25 (28%)
Query: 57 HVLEGHDRGVNWACFHPTLPLIVSG 81
+ H A P+ SG
Sbjct: 52 EIYTEHSHQTTVAKTSPSGYYCASG 76
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 28.3 bits (61), Expect = 0.20
Identities = 2/25 (8%), Positives = 9/25 (36%)
Query: 57 HVLEGHDRGVNWACFHPTLPLIVSG 81
+ + ++ P+ L++
Sbjct: 5 QIEQAPKDYISDIKIIPSKSLLLIT 29
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 28.2 bits (61), Expect = 0.24
Identities = 11/26 (42%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 56 KHVLEGHDRGVNWACFHPTLPLIVSG 81
VL+GHD V C IVSG
Sbjct: 9 PKVLKGHDDHV-ITCLQFCGNRIVSG 33
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 27.6 bits (59), Expect = 0.38
Identities = 6/25 (24%), Positives = 13/25 (52%), Gaps = 4/25 (16%)
Query: 57 HVLEGHDRGVNWACFHPTLPLIVSG 81
+ GH++G+ +P ++SG
Sbjct: 7 KTISGHNKGITALTVNP----LISG 27
Score = 26.5 bits (56), Expect = 1.1
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 57 HVLEGHDRGVNWACFHPTLPLIVSG 81
L H GVN + L+ SG
Sbjct: 252 KALNAHKDGVNNLLWETPSTLVSSG 276
>d1utea_ d.159.1.1 (A:) Mammalian purple acid phosphatase {Pig (Sus
scrofa) [TaxId: 9823]}
Length = 302
Score = 25.9 bits (55), Expect = 1.6
Identities = 12/51 (23%), Positives = 18/51 (35%)
Query: 55 VKHVLEGHDRGVNWACFHPTLPLIVSGKGLCLLDHGPNLFPVVLDSSDFFV 105
V L GHD + + L ++SG G + +L V F
Sbjct: 212 VTAYLCGHDHNLQYLQDENGLGFVLSGAGNFMDPSKKHLRKVPNGYLRFHF 262
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 25.9 bits (55), Expect = 1.7
Identities = 7/26 (26%), Positives = 8/26 (30%)
Query: 56 KHVLEGHDRGVNWACFHPTLPLIVSG 81
GH V F +VSG
Sbjct: 247 NESGTGHKDSVYSVVFTRDGQSVVSG 272
Score = 25.1 bits (53), Expect = 2.8
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 6/31 (19%)
Query: 57 HVLEGHDRGV------NWACFHPTLPLIVSG 81
+L+GH V N + P + +G
Sbjct: 344 LMLQGHRNSVISVAVANGSSLGPEYNVFATG 374
Score = 24.0 bits (50), Expect = 7.4
Identities = 9/52 (17%), Positives = 12/52 (23%), Gaps = 4/52 (7%)
Query: 30 PGMGGLEEHLRNPSSTDLFGQADAVVKHVLEGHDRGVNWACFHPTLPLIVSG 81
L NP+ V H H V F + +G
Sbjct: 33 KKQTNDYYILYNPALPREI----DVELHKSLDHTSVVCCVKFSNDGEYLATG 80
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 25.6 bits (54), Expect = 2.0
Identities = 9/40 (22%), Positives = 12/40 (30%), Gaps = 2/40 (5%)
Query: 42 PSSTDLFGQADAVVKHVLEGHDRGVNWACFHPTLPLIVSG 81
++ D A + L H V F IVS
Sbjct: 246 VAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF--QIVSS 283
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 24.8 bits (52), Expect = 3.6
Identities = 4/21 (19%), Positives = 5/21 (23%)
Query: 61 GHDRGVNWACFHPTLPLIVSG 81
V IV+G
Sbjct: 304 KESSSVLSCDISVDDKYIVTG 324
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 24.4 bits (51), Expect = 4.7
Identities = 4/25 (16%), Positives = 7/25 (28%), Gaps = 2/25 (8%)
Query: 57 HVLEGHDRGVNWACFHPTLPLIVSG 81
+ + HD + VS
Sbjct: 8 NAGKAHDADIFSVSACN--SFTVSC 30
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.431
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 452,910
Number of extensions: 18592
Number of successful extensions: 57
Number of sequences better than 10.0: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 28
Length of query: 120
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 46
Effective length of database: 1,391,576
Effective search space: 64012496
Effective search space used: 64012496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.1 bits)