BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7502
(87 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T7N|A Chain A, Crystal Structure Of The M564g Mutant Of Murine Crat
pdb|1T7O|A Chain A, Crystal Structure Of The M564g Mutant Of Murine Carnitine
Acetyltransferase In Complex With Carnitine
Length = 618
Score = 57.8 bits (138), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 5 YGENATRYTEEELTSQFMKILESQ-PSQVNPVGILTTQRRDMWAESWDILQKDEQNRANL 63
Y + T T +++ Q KI S S PVGILT+ R+ WA++++ L KD+ NR ++
Sbjct: 209 YHSDGTPLTSDQIFVQLEKIWNSSLQSNKEPVGILTSNHRNTWAKAYNNLIKDKVNRESV 268
Query: 64 DLIEKSLITICLD 76
+ I+KS+ T+CLD
Sbjct: 269 NSIQKSIFTVCLD 281
>pdb|1NDB|A Chain A, Crystal Structure Of Carnitine Acetyltransferase
pdb|1NDB|B Chain B, Crystal Structure Of Carnitine Acetyltransferase
Length = 596
Score = 57.8 bits (138), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 5 YGENATRYTEEELTSQFMKILESQ-PSQVNPVGILTTQRRDMWAESWDILQKDEQNRANL 63
Y + T T +++ Q KI S S PVGILT+ R+ WA++++ L KD+ NR ++
Sbjct: 188 YHSDGTPLTSDQIFVQLEKIWNSSLQSNKEPVGILTSNHRNTWAKAYNNLIKDKVNRESV 247
Query: 64 DLIEKSLITICLD 76
+ I+KS+ T+CLD
Sbjct: 248 NSIQKSIFTVCLD 260
>pdb|1T7Q|A Chain A, Crystal Structure Of The F565a Mutant Of Murine Carnitine
Acetyltransferase In Complex With Carnitine And Coa
pdb|1T7Q|B Chain B, Crystal Structure Of The F565a Mutant Of Murine Carnitine
Acetyltransferase In Complex With Carnitine And Coa
Length = 618
Score = 57.8 bits (138), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 5 YGENATRYTEEELTSQFMKILESQ-PSQVNPVGILTTQRRDMWAESWDILQKDEQNRANL 63
Y + T T +++ Q KI S S PVGILT+ R+ WA++++ L KD+ NR ++
Sbjct: 209 YHSDGTPLTSDQIFVQLEKIWNSSLQSNKEPVGILTSNHRNTWAKAYNNLIKDKVNRESV 268
Query: 64 DLIEKSLITICLD 76
+ I+KS+ T+CLD
Sbjct: 269 NSIQKSIFTVCLD 281
>pdb|2H3W|A Chain A, Crystal Structure Of The S554aM564G MUTANT OF MURINE
Carnitine Acetyltransferase In Complex With
Hexanoylcarnitine And Coa
pdb|2H3W|B Chain B, Crystal Structure Of The S554aM564G MUTANT OF MURINE
Carnitine Acetyltransferase In Complex With
Hexanoylcarnitine And Coa
Length = 599
Score = 57.8 bits (138), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 5 YGENATRYTEEELTSQFMKILESQ-PSQVNPVGILTTQRRDMWAESWDILQKDEQNRANL 63
Y + T T +++ Q KI S S PVGILT+ R+ WA++++ L KD+ NR ++
Sbjct: 191 YHSDGTPLTSDQIFVQLEKIWNSSLQSNKEPVGILTSNHRNTWAKAYNNLIKDKVNRESV 250
Query: 64 DLIEKSLITICLD 76
+ I+KS+ T+CLD
Sbjct: 251 NSIQKSIFTVCLD 263
>pdb|2H3P|A Chain A, Crystal Structure Of Murine Carnitine Acetyltransferase In
Complex With Carnitine And Acetyl-Coa
pdb|2H3P|B Chain B, Crystal Structure Of Murine Carnitine Acetyltransferase In
Complex With Carnitine And Acetyl-Coa
pdb|2H3U|A Chain A, Crystal Structure Of Murine Carnitine Acetyltransferase In
Complex With Carnitine And Coa
pdb|2H3U|B Chain B, Crystal Structure Of Murine Carnitine Acetyltransferase In
Complex With Carnitine And Coa
Length = 599
Score = 57.4 bits (137), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 5 YGENATRYTEEELTSQFMKILESQ-PSQVNPVGILTTQRRDMWAESWDILQKDEQNRANL 63
Y + T T +++ Q KI S S PVGILT+ R+ WA++++ L KD+ NR ++
Sbjct: 191 YHSDGTPLTSDQIFVQLEKIWNSSLQSNKEPVGILTSNHRNTWAKAYNNLIKDKVNRESV 250
Query: 64 DLIEKSLITICLD 76
+ I+KS+ T+CLD
Sbjct: 251 NSIQKSIFTVCLD 263
>pdb|1NDF|A Chain A, Carnitine Acetyltransferase In Complex With Carnitine
pdb|1NDF|B Chain B, Carnitine Acetyltransferase In Complex With Carnitine
pdb|1NDI|A Chain A, Carnitine Acetyltransferase In Complex With Coa
pdb|1NDI|B Chain B, Carnitine Acetyltransferase In Complex With Coa
Length = 596
Score = 57.4 bits (137), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 5 YGENATRYTEEELTSQFMKILESQ-PSQVNPVGILTTQRRDMWAESWDILQKDEQNRANL 63
Y + T T +++ Q KI S S PVGILT+ R+ WA++++ L KD+ NR ++
Sbjct: 188 YHSDGTPLTSDQIFVQLEKIWNSSLQSNKEPVGILTSNHRNTWAKAYNNLIKDKVNRESV 247
Query: 64 DLIEKSLITICLD 76
+ I+KS+ T+CLD
Sbjct: 248 NSIQKSIFTVCLD 260
>pdb|2FY2|A Chain A, Structures Of Ligand Bound Human Choline Acetyltransferase
Provide Insight Into Regulation Of Acetylcholine
Synthesis
pdb|2FY3|A Chain A, Structures Of Ligand Bound Human Choline Acetyltransferase
Provides Insight Into Regulation Of Acetylcholine
Synthesis
pdb|2FY4|A Chain A, Structures Of Ligand Bound Human Choline Acetyltransferase
Provide Insight Into Regulation Of Acetylcholine
Synthesis
pdb|2FY5|A Chain A, Structures Of Ligand Bound Human Choline Acetyltransferase
Provide Insight Into Regulation Of Acetylcholine
Synthesis
Length = 612
Score = 57.0 bits (136), Expect = 3e-09, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 47/73 (64%), Gaps = 3/73 (4%)
Query: 8 NATRYTEEELTSQFMKILE---SQPSQVNPVGILTTQRRDMWAESWDILQKDEQNRANLD 64
N R +E +L +Q KI++ + +++ P+G+LT+ R WAE+ +L KD NR +LD
Sbjct: 202 NFRRLSEGDLFTQLRKIVKMASNAAARLPPIGLLTSDGRSEWAEARTVLVKDSTNRDSLD 261
Query: 65 LIEKSLITICLDS 77
+IE+ + +CLD+
Sbjct: 262 MIERCICLVCLDA 274
>pdb|1NM8|A Chain A, Structure Of Human Carnitine Acetyltransferase: Molecular
Basis For Fatty Acyl Transfer
pdb|1S5O|A Chain A, Structural And Mutational Characterization Of L-Carnitine
Binding To Human Carnitine Acetyltransferase
Length = 616
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 4 TYGENATRYTEEELTSQFMKILESQ-PSQVNPVGILTTQRRDMWAESWDILQKDEQNRAN 62
Y + T T +++ Q KI S + PVGILT+ R+ WA++++ L KD+ NR +
Sbjct: 195 VYHSDGTPLTADQIFVQLEKIWNSSLQTNKEPVGILTSNHRNSWAKAYNTLIKDKVNRDS 254
Query: 63 LDLIEKSLITICLDS 77
+ I+KS+ T+CLD+
Sbjct: 255 VRSIQKSIFTVCLDA 269
>pdb|1Q6X|A Chain A, Crystal Structure Of Rat Choline Acetyltransferase
pdb|1Q6X|B Chain B, Crystal Structure Of Rat Choline Acetyltransferase
Length = 644
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 8 NATRYTEEELTSQFMKILE---SQPSQVNPVGILTTQRRDMWAESWDILQKDEQNRANLD 64
N R +E +L +Q KI++ ++ ++ P+G+LT+ R WA++ +L KD NR +LD
Sbjct: 212 NFRRLSEGDLFTQLRKIVKMASNEDERLPPIGLLTSDGRSEWAKARTVLLKDSTNRDSLD 271
Query: 65 LIEKSLITICLDS 77
+IE+ + +CLD
Sbjct: 272 MIERCICLVCLDG 284
>pdb|1T1U|A Chain A, Structural Insights And Functional Implications Of Choline
Acetyltransferase
Length = 639
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 8 NATRYTEEELTSQFMKILE---SQPSQVNPVGILTTQRRDMWAESWDILQKDEQNRANLD 64
N R +E +L +Q KI++ ++ ++ P+G+LT+ R WA++ +L KD NR +LD
Sbjct: 211 NFRRLSEGDLFTQLRKIVKMASNEDERLPPIGLLTSDGRSEWAKARTVLLKDSTNRDSLD 270
Query: 65 LIEKSLITICLDS 77
+IE+ + +CLD
Sbjct: 271 MIERCICLVCLDG 283
>pdb|2FW3|A Chain A, Crystal Structure Of Rat Carnitine Palmitoyltransferase 2
In Complex With Antidiabetic Drug St1326
pdb|2RCU|A Chain A, Crystal Structure Of Rat Carnitine Palmitoyltransferase 2
In Complex With R-3-(Hexadecanoylamino)-4-
(Trimethylazaniumyl)butanoate
pdb|2RCU|B Chain B, Crystal Structure Of Rat Carnitine Palmitoyltransferase 2
In Complex With R-3-(Hexadecanoylamino)-4-
(Trimethylazaniumyl)butanoate
Length = 653
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 16 ELTSQFMKIL-ESQPSQVNPVGILTTQRRDMWAESWDILQKDEQNRANLDLIEKSLITIC 74
E+ + IL +S P PV LT++ RD+WAE L D N L ++ ++ +C
Sbjct: 263 EIQAHLKYILSDSSPVPEFPVAYLTSENRDVWAELRQKLIFD-GNEETLKKVDSAVFCLC 321
Query: 75 LDSVPL 80
LD P+
Sbjct: 322 LDDFPM 327
>pdb|2H4T|A Chain A, Crystal Structure Of Rat Carnitine Palmitoyltransferase Ii
pdb|2H4T|B Chain B, Crystal Structure Of Rat Carnitine Palmitoyltransferase Ii
Length = 626
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 16 ELTSQFMKIL-ESQPSQVNPVGILTTQRRDMWAESWDILQKDEQNRANLDLIEKSLITIC 74
E+ + IL +S P PV LT++ RD+WAE L D N L ++ ++ +C
Sbjct: 238 EIQAHLKYILSDSSPVPEFPVAYLTSENRDVWAELRQKLIFD-GNEETLKKVDSAVFCLC 296
Query: 75 LDSVPL 80
LD P+
Sbjct: 297 LDDFPM 302
>pdb|2DEB|A Chain A, Crystal Structure Of Rat Carnitine Palmitoyltransferase 2
In Space Group C2221
pdb|2DEB|B Chain B, Crystal Structure Of Rat Carnitine Palmitoyltransferase 2
In Space Group C2221
pdb|2FYO|A Chain A, Crystal Structure Of Rat Carnitine Palmitoyltransferase 2
In Space Group P43212
Length = 653
Score = 36.6 bits (83), Expect = 0.004, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 16 ELTSQFMKIL-ESQPSQVNPVGILTTQRRDMWAESWDILQKDEQNRANLDLIEKSLITIC 74
E+ + IL +S P PV LT++ RD+WAE L D N L ++ ++ +C
Sbjct: 263 EIQAHLKYILSDSSPVPEFPVAYLTSENRDVWAELRQKLIFD-GNEETLKKVDSAVFCLC 321
Query: 75 LDSVP 79
LD P
Sbjct: 322 LDDFP 326
>pdb|1PX7|A Chain A, A Folding Mutant Of Human Class Pi Glutathione
Transferase, Created By Mutating Aspartate 153 Of The
Wild-Type Protein To Glutamate
pdb|1PX7|B Chain B, A Folding Mutant Of Human Class Pi Glutathione
Transferase, Created By Mutating Aspartate 153 Of The
Wild-Type Protein To Glutamate
Length = 209
Score = 28.5 bits (62), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 25 LESQPSQVNPVGILTTQRRDMWAESW---DILQKDEQNRANLDLIEKSLITICLDSVPLS 81
+++ P Q+ P L +Q + +++ D + E N +L LI + L CLD+ PL
Sbjct: 119 VKALPGQLKPFETLLSQNQG--GKTFIVGDQISFAEYNLLDLLLIHEVLAPGCLDAFPLL 176
Query: 82 PSFIG 86
+++G
Sbjct: 177 SAYVG 181
>pdb|3KK7|A Chain A, Crystal Structure Of Putative Cell Invasion Protein With
MacPERFORIN Domain (Np_812351.1) From Bacteriodes
Thetaiotaomicron Vpi-5482 At 2.46 A Resolution
pdb|3KK7|B Chain B, Crystal Structure Of Putative Cell Invasion Protein With
MacPERFORIN Domain (Np_812351.1) From Bacteriodes
Thetaiotaomicron Vpi-5482 At 2.46 A Resolution
Length = 541
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 23 KILESQPSQVNPVGILTTQRRDMWAESWDILQKDE 57
K+LE PS +NP + TT+ + + +D L+K++
Sbjct: 84 KLLERYPSYINPKELRTTETKALSYSDFDRLEKNK 118
>pdb|1YQE|A Chain A, Crystal Structure Of Conserved Protein Of Unknown Function
Af0625
Length = 282
Score = 25.8 bits (55), Expect = 6.2, Method: Composition-based stats.
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 3 LTYGENATRYTEEELTSQFM 22
T+G N +YT E LT++F+
Sbjct: 212 FTFGHNFAKYTFEHLTAEFL 231
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,525,308
Number of Sequences: 62578
Number of extensions: 81801
Number of successful extensions: 222
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 201
Number of HSP's gapped (non-prelim): 23
length of query: 87
length of database: 14,973,337
effective HSP length: 55
effective length of query: 32
effective length of database: 11,531,547
effective search space: 369009504
effective search space used: 369009504
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)