Query psy7502
Match_columns 87
No_of_seqs 150 out of 786
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 20:00:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7502.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7502hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3717|consensus 99.9 1.1E-22 2.3E-27 153.0 8.0 79 2-81 193-274 (612)
2 PF00755 Carn_acyltransf: Chol 99.9 1.1E-22 2.4E-27 155.2 7.1 80 1-81 179-261 (591)
3 KOG3719|consensus 99.8 2.1E-19 4.6E-24 134.9 6.6 75 2-77 228-304 (638)
4 KOG3716|consensus 99.7 2.9E-17 6.3E-22 126.0 6.2 76 1-77 336-414 (764)
5 KOG3718|consensus 99.5 3.1E-14 6.8E-19 106.6 6.7 84 2-86 203-289 (609)
6 PRK11409 antitoxin YefM; Provi 69.8 20 0.00043 21.0 5.3 52 11-63 3-64 (83)
7 COG1244 Predicted Fe-S oxidore 64.3 5.5 0.00012 29.6 2.0 51 5-55 72-128 (358)
8 PRK00124 hypothetical protein; 59.7 42 0.00091 22.1 5.4 54 2-55 87-145 (151)
9 PF02639 DUF188: Uncharacteriz 56.7 49 0.0011 21.0 5.3 53 2-54 71-128 (130)
10 PF03568 Peptidase_C50: Peptid 55.1 35 0.00075 25.3 4.9 57 13-71 37-93 (383)
11 PF07023 DUF1315: Protein of u 47.0 27 0.00058 21.3 2.7 20 7-26 26-45 (93)
12 PRK11162 mltA murein transglyc 46.0 47 0.001 24.9 4.3 54 2-66 44-100 (355)
13 PRK00103 rRNA large subunit me 44.9 45 0.00097 21.9 3.8 25 4-28 72-96 (157)
14 COG1671 Uncharacterized protei 44.6 88 0.0019 20.6 5.0 54 2-55 86-144 (150)
15 PF02590 SPOUT_MTase: Predicte 42.4 31 0.00068 22.5 2.7 27 4-30 72-98 (155)
16 PHA00442 host recBCD nuclease 39.7 50 0.0011 18.2 2.8 30 39-68 8-37 (59)
17 CHL00130 rbcS ribulose-1,5-bis 38.1 34 0.00074 22.3 2.3 19 11-29 13-31 (138)
18 cd03527 RuBisCO_small Ribulose 37.0 37 0.00081 20.8 2.3 18 11-28 11-28 (99)
19 KOG2463|consensus 35.7 30 0.00064 25.9 2.0 37 5-42 178-214 (376)
20 TIGR00246 tRNA_RlmH_YbeA rRNA 34.9 55 0.0012 21.4 3.0 25 4-28 70-94 (153)
21 PF12990 DUF3874: Domain of un 34.9 39 0.00086 19.5 2.1 21 6-26 20-40 (73)
22 PLN02289 ribulose-bisphosphate 32.6 46 0.001 22.5 2.3 18 11-28 75-92 (176)
23 PRK02539 hypothetical protein; 31.5 47 0.001 19.9 2.0 18 2-19 51-68 (85)
24 PF04937 DUF659: Protein of un 28.8 1.1E+02 0.0023 19.9 3.6 49 5-55 66-114 (153)
25 PRK01546 hypothetical protein; 27.7 64 0.0014 19.0 2.1 19 2-20 52-70 (79)
26 PF08339 RTX_C: RTX C-terminal 26.8 33 0.00072 22.5 0.9 19 4-22 53-71 (145)
27 KOG2041|consensus 25.8 50 0.0011 27.6 1.9 47 34-86 581-629 (1189)
28 KOG2222|consensus 25.7 71 0.0015 25.5 2.6 23 4-26 685-708 (848)
29 PF14980 TIP39: TIP39 peptide 24.9 39 0.00086 18.1 0.8 18 34-51 26-43 (51)
30 PRK04570 cell division protein 24.7 80 0.0017 22.5 2.5 26 3-28 204-229 (243)
31 PF15173 FAM180: FAM180 family 24.4 73 0.0016 20.7 2.1 42 11-55 90-131 (137)
32 PF06584 DIRP: DIRP; InterPro 23.3 67 0.0015 20.0 1.8 22 34-55 24-45 (109)
33 PF02337 Gag_p10: Retroviral G 23.1 1.8E+02 0.0039 17.4 4.0 47 5-55 18-64 (90)
34 PF10908 DUF2778: Protein of u 22.5 71 0.0015 20.2 1.8 23 33-55 89-111 (120)
35 PF02885 Glycos_trans_3N: Glyc 21.9 1.1E+02 0.0023 16.7 2.3 21 8-28 11-31 (66)
36 PF13405 EF-hand_6: EF-hand do 21.8 53 0.0012 14.9 0.9 19 4-22 8-27 (31)
37 PF06163 DUF977: Bacterial pro 21.8 1E+02 0.0022 19.8 2.4 19 35-53 62-81 (127)
38 PF00101 RuBisCO_small: Ribulo 21.5 98 0.0021 18.8 2.2 18 11-28 10-27 (99)
39 PF08120 Toxin_32: Tamulustoxi 21.4 69 0.0015 15.5 1.2 18 69-86 2-21 (35)
40 TIGR00097 HMP-P_kinase phospho 21.1 87 0.0019 21.4 2.2 31 11-41 49-79 (254)
41 PF11833 DUF3353: Protein of u 21.1 85 0.0018 21.3 2.1 23 47-69 10-33 (194)
42 smart00553 SEP Domain present 20.9 76 0.0016 19.1 1.6 16 56-71 26-41 (93)
43 COG3327 PaaX Phenylacetic acid 20.4 2E+02 0.0043 21.0 3.8 47 8-55 130-189 (291)
44 COG3139 Uncharacterized protei 20.3 1.4E+02 0.003 17.9 2.6 20 7-26 28-47 (90)
45 PRK03427 cell division protein 20.2 1.4E+02 0.0029 22.3 3.1 25 3-27 304-328 (333)
46 PF14066 DUF4256: Protein of u 20.2 1.4E+02 0.0031 20.1 2.9 25 45-69 20-44 (173)
No 1
>KOG3717|consensus
Probab=99.88 E-value=1.1e-22 Score=152.97 Aligned_cols=79 Identities=38% Similarity=0.643 Sum_probs=73.7
Q ss_pred cceecCCCcccCHHHHHHHHHHHHhhCCCCCC---CcccccccchHHHHHHHHHHhcChhHHHHHHHHHhhceeEeccCC
Q psy7502 2 RLTYGENATRYTEEELTSQFMKILESQPSQVN---PVGILTTQRRDMWAESWDILQKDEQNRANLDLIEKSLITICLDSV 78 (87)
Q Consensus 2 ~~v~~~~g~~ls~~~i~~~l~~I~~~~~~~~~---~vg~LT~~~Rd~Wa~~r~~L~~~~~N~~~L~~Ie~alf~l~LD~~ 78 (87)
+.|++++|++++..+|..||.+|+.++...++ |||+||+++||+||++|+.|++++.|+.+|+.||+|+|+||||.
T Consensus 193 L~v~~~~~~~ls~~~i~~QL~~Iv~~~~~~~~k~~piGilTsd~Rd~WAe~~~~L~kd~~N~dsle~I~~s~f~vCLD~- 271 (612)
T KOG3717|consen 193 LDVYDSDGKPLSEDDIFVQLEKIVSSSSQPNPKLEPVGILTSDPRDNWAEAYETLVKDPVNRDSLETIQKSLFVVCLDA- 271 (612)
T ss_pred EEEEcCCCCcccHHHHHHHHHHHHHhccCCCCCCCCeeccccCchhHHHHHHHHHhcCcccHHHHHHHhhceEEEEecC-
Confidence 57889999999999999999999999877654 99999999999999999999999999999999999999999998
Q ss_pred CCC
Q psy7502 79 PLS 81 (87)
Q Consensus 79 ~~p 81 (87)
+.|
T Consensus 272 ~~~ 274 (612)
T KOG3717|consen 272 TTP 274 (612)
T ss_pred CCC
Confidence 544
No 2
>PF00755 Carn_acyltransf: Choline/Carnitine o-acyltransferase; InterPro: IPR000542 A number of eukaryotic acetyltransferases can, on the basis of sequence similarities, be grouped together into a family. These enzymes include: Choline o-acetyltransferase 2.3.1.6 from EC, an enzyme that catalyses the biosynthesis of the neurotransmitter acetylcholine []. Carnitine o-acetyltransferase 2.3.1.7 from EC []. Peroxisomal carnitine octanoyltransferase 2.3.1.137 from EC, a fatty acid beta-oxidation pathway enzyme which is involved in the transport of medium-chain acyl-coenzyme A's from peroxisome to mitochondria []. Mitochondrial carnitine palmitoyltransferases I and II 2.3.1.21 from EC (CPT), enzymes involved in fatty acid metabolism and transport []. Mycoplasma pneumoniae putative acetyltransferase C09_orf600. ; GO: 0016746 transferase activity, transferring acyl groups; PDB: 2DEB_B 2H4T_A 2FW3_A 2RCU_B 2FYO_A 1S5O_A 1NM8_A 1T7Q_B 2H3W_B 1NDI_B ....
Probab=99.87 E-value=1.1e-22 Score=155.22 Aligned_cols=80 Identities=33% Similarity=0.522 Sum_probs=67.5
Q ss_pred CcceecCCCcccCHHHHHHHHHHHHhhCCC---CCCCcccccccchHHHHHHHHHHhcChhHHHHHHHHHhhceeEeccC
Q psy7502 1 MRLTYGENATRYTEEELTSQFMKILESQPS---QVNPVGILTTQRRDMWAESWDILQKDEQNRANLDLIEKSLITICLDS 77 (87)
Q Consensus 1 ~~~v~~~~g~~ls~~~i~~~l~~I~~~~~~---~~~~vg~LT~~~Rd~Wa~~r~~L~~~~~N~~~L~~Ie~alf~l~LD~ 77 (87)
+|+|++.+|+++++++|+.||++|++++.. ...+||+||+++||.||++|++|++++.|+++|+.||+|+|+||||+
T Consensus 179 ~v~v~~~~g~~~s~~eL~~~L~~I~~~~~~~~~~~~~vg~LT~~~Rd~Wa~~R~~L~~~~~N~~~L~~Ie~AlFvl~LDd 258 (591)
T PF00755_consen 179 KVDVLDEDGRILSPSELEAQLQRILDDSEKEEPPEPPVGALTADNRDSWAEAREELLSDSENAESLETIESALFVLCLDD 258 (591)
T ss_dssp EEESEETTSEB--HHHHHHHHHHHHHHHHSGGC-SS-GGGGGGS-HHHHHHHHHHHTTSHHHHHHHHHHHHSS-EEEEES
T ss_pred EEEEEecCCcccCHHHHHHHHHHHHhhccccccCCCCccccccCCccHHHHHHHHHHhcchhHHHHHHHHhhheEEeccc
Confidence 478999999999999999999999998763 24699999999999999999999997779999999999999999999
Q ss_pred CCCC
Q psy7502 78 VPLS 81 (87)
Q Consensus 78 ~~~p 81 (87)
..|
T Consensus 259 -~~~ 261 (591)
T PF00755_consen 259 -DDP 261 (591)
T ss_dssp -S-S
T ss_pred -CCC
Confidence 644
No 3
>KOG3719|consensus
Probab=99.79 E-value=2.1e-19 Score=134.86 Aligned_cols=75 Identities=35% Similarity=0.529 Sum_probs=68.2
Q ss_pred cceecCCCcccCHHHHHHHHHHHHhhCCCC--CCCcccccccchHHHHHHHHHHhcChhHHHHHHHHHhhceeEeccC
Q psy7502 2 RLTYGENATRYTEEELTSQFMKILESQPSQ--VNPVGILTTQRRDMWAESWDILQKDEQNRANLDLIEKSLITICLDS 77 (87)
Q Consensus 2 ~~v~~~~g~~ls~~~i~~~l~~I~~~~~~~--~~~vg~LT~~~Rd~Wa~~r~~L~~~~~N~~~L~~Ie~alf~l~LD~ 77 (87)
++|+|++|++++|++|+..|.+|+.++... ..|+|.||+.+|+.||++|++|++.. |.+.|..|++|+|||||||
T Consensus 228 ~~VLDs~g~i~tp~el~~~l~~Il~d~s~~a~s~plG~lTS~srd~Wa~~R~~L~~~~-~~e~lr~IDsALF~lcLDD 304 (638)
T KOG3719|consen 228 FDVLDSDGKIYTPEELTAILNHILKDSSGIAPSTPLGSLTSESRDNWAEARQRLQSAG-NNELLRKIDSALFVLCLDD 304 (638)
T ss_pred EEEecCCCcCcCHHHHHHHHHHHHhcccCCCCCCccceecccchhHHHHHHHHHHhcC-ChhhHHhccceeEEEEecC
Confidence 689999999999999999999999976543 24999999999999999999999754 7788999999999999998
No 4
>KOG3716|consensus
Probab=99.69 E-value=2.9e-17 Score=125.99 Aligned_cols=76 Identities=25% Similarity=0.353 Sum_probs=68.9
Q ss_pred CcceecCCCcccCHHHHHHHHHHHHhhCCCCC---CCcccccccchHHHHHHHHHHhcChhHHHHHHHHHhhceeEeccC
Q psy7502 1 MRLTYGENATRYTEEELTSQFMKILESQPSQV---NPVGILTTQRRDMWAESWDILQKDEQNRANLDLIEKSLITICLDS 77 (87)
Q Consensus 1 ~~~v~~~~g~~ls~~~i~~~l~~I~~~~~~~~---~~vg~LT~~~Rd~Wa~~r~~L~~~~~N~~~L~~Ie~alf~l~LD~ 77 (87)
|+++++. |++++|.||+.|+++|+++.+.+. ..+++||+++|+.||++|+.++..+.|+++|+.||+|.|+|+||+
T Consensus 336 Kv~i~~~-~rll~p~eLekq~~eil~~~~~~~~ge~~lAaLTa~~R~~Wa~~R~~~F~~g~Nk~sL~~IE~AafvvsLDe 414 (764)
T KOG3716|consen 336 KVDIYDG-GRLLKPCELEKQFQEILDRDSKPQGGEEKLAALTAGPRDEWARNRQKFFLSGVNKESLEAIETAAFVVSLDE 414 (764)
T ss_pred EEEEecC-CeeccHHHHHHHHHHHhcCCCCCcchhhHHHhhccCCccHHHHHHHHHHhhcccHHHHHHHhhceEEEEecC
Confidence 5677776 899999999999999999765542 389999999999999999999988999999999999999999996
No 5
>KOG3718|consensus
Probab=99.51 E-value=3.1e-14 Score=106.57 Aligned_cols=84 Identities=20% Similarity=0.189 Sum_probs=68.8
Q ss_pred cceecCCCcccC-HHHHHHHHHHHHhhCCCC-CCCcccccccchHHHHHHHHHHhc-ChhHHHHHHHHHhhceeEeccCC
Q psy7502 2 RLTYGENATRYT-EEELTSQFMKILESQPSQ-VNPVGILTTQRRDMWAESWDILQK-DEQNRANLDLIEKSLITICLDSV 78 (87)
Q Consensus 2 ~~v~~~~g~~ls-~~~i~~~l~~I~~~~~~~-~~~vg~LT~~~Rd~Wa~~r~~L~~-~~~N~~~L~~Ie~alf~l~LD~~ 78 (87)
.++++++..+++ |++|...++.+...+..+ +.+|..||+++||.||.+|++|++ ++.|.+.|..||+|+|++|+-+
T Consensus 203 fd~~hEdd~~l~~peel~nllk~~k~~ssep~gc~v~~LTs~eRd~WA~nRe~Li~~s~aN~ell~~VeSa~l~lsm~d- 281 (609)
T KOG3718|consen 203 FDCVHEDDTILSAPEELVNLLKVRKILSSEPLGCCVPTLTSDERDTWARNRERLIEISVANKELLLLVESACLELSMYD- 281 (609)
T ss_pred EEeeccCCcccCCHHHHHHHHHHHHhccCCCCCcchhccccccccHHHHHHHHHHhcChhhHHHHHHHhhheEEEEecc-
Confidence 467888888888 555555555444433333 458999999999999999999998 8999999999999999999999
Q ss_pred CCCCCCCC
Q psy7502 79 PLSPSFIG 86 (87)
Q Consensus 79 ~~p~~~~~ 86 (87)
..|+++++
T Consensus 282 ~~pedyse 289 (609)
T KOG3718|consen 282 QSPEDYSE 289 (609)
T ss_pred CCcccHHH
Confidence 99988753
No 6
>PRK11409 antitoxin YefM; Provisional
Probab=69.83 E-value=20 Score=20.96 Aligned_cols=52 Identities=10% Similarity=0.121 Sum_probs=30.9
Q ss_pred ccCHHHHHHHHHHHHhhCCCC---------C-CCcccccccchHHHHHHHHHHhcChhHHHHH
Q psy7502 11 RYTEEELTSQFMKILESQPSQ---------V-NPVGILTTQRRDMWAESWDILQKDEQNRANL 63 (87)
Q Consensus 11 ~ls~~~i~~~l~~I~~~~~~~---------~-~~vg~LT~~~Rd~Wa~~r~~L~~~~~N~~~L 63 (87)
.++..++...|..+++..... + +.+-+++.++-..|-+. -+|+++|.|++.|
T Consensus 3 ~i~~s~~R~~l~~~l~~v~~~~epv~ITr~g~~~~Vl~S~~~yesl~Et-l~ll~~p~~~~~l 64 (83)
T PRK11409 3 TISYSEARQNLSATMMKAVEDHAPILITRQNGEACVLMSLEEYNSLEET-AYLLRSPANARRL 64 (83)
T ss_pred eEcHHHHHHHHHHHHHHHhccCCcEEEEeCCCCCEEEEeHHHHHHHHHH-HHHhcCHHHHHHH
Confidence 357788888888888654321 1 23444444444444322 3356789998776
No 7
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=64.32 E-value=5.5 Score=29.64 Aligned_cols=51 Identities=18% Similarity=0.181 Sum_probs=36.8
Q ss_pred ecCCCcccCHHHHHHHHHHHHhhCCCC-CC-Cccccccc----chHHHHHHHHHHhc
Q psy7502 5 YGENATRYTEEELTSQFMKILESQPSQ-VN-PVGILTTQ----RRDMWAESWDILQK 55 (87)
Q Consensus 5 ~~~~g~~ls~~~i~~~l~~I~~~~~~~-~~-~vg~LT~~----~Rd~Wa~~r~~L~~ 55 (87)
.|+.|..++.++|..||.+++...... .. .|-++|+. ++..-.++|.++.+
T Consensus 72 ~d~~~~~vs~E~l~~qfd~~~~k~~~~~~~~~vkIFTSGSFLD~~EVP~e~R~~Il~ 128 (358)
T COG1244 72 ADSAGEPVSEENLINQFDEAYSKYEGKFDEFVVKIFTSGSFLDPEEVPREARRYILE 128 (358)
T ss_pred cccCCCCCCHHHHHHHHHHHHHHhcccCCCceEEEEcccccCChhhCCHHHHHHHHH
Confidence 455688999999999999999876532 33 58899997 34444556666554
No 8
>PRK00124 hypothetical protein; Validated
Probab=59.71 E-value=42 Score=22.07 Aligned_cols=54 Identities=11% Similarity=0.222 Sum_probs=38.8
Q ss_pred cceecCCCcccCHHHHHHHHH--HHHhhCCC---CCCCcccccccchHHHHHHHHHHhc
Q psy7502 2 RLTYGENATRYTEEELTSQFM--KILESQPS---QVNPVGILTTQRRDMWAESWDILQK 55 (87)
Q Consensus 2 ~~v~~~~g~~ls~~~i~~~l~--~I~~~~~~---~~~~vg~LT~~~Rd~Wa~~r~~L~~ 55 (87)
.-|++.+|+.++++.|-..|. ++.++-.. .......+|..+|...+..-+++++
T Consensus 87 a~vl~prG~~yt~~nI~~~L~~R~~~~~lR~~G~~t~Gp~~~~~~Dr~~F~~~L~~~l~ 145 (151)
T PRK00124 87 AIVLNPRGYIYTNDNIDQLLAMRDLMATLRRSGIRTGGPKPFTQEDRSRFEAELDKLIR 145 (151)
T ss_pred CEEECCCCcCCCHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 458899999999999987765 34333221 1235667899999999888877764
No 9
>PF02639 DUF188: Uncharacterized BCR, YaiI/YqxD family COG1671; InterPro: IPR003791 This entry describes proteins of unknown function.
Probab=56.69 E-value=49 Score=21.04 Aligned_cols=53 Identities=15% Similarity=0.253 Sum_probs=35.6
Q ss_pred cceecCCCcccCHHHHHHHHH--HHHhhC---CCCCCCcccccccchHHHHHHHHHHh
Q psy7502 2 RLTYGENATRYTEEELTSQFM--KILESQ---PSQVNPVGILTTQRRDMWAESWDILQ 54 (87)
Q Consensus 2 ~~v~~~~g~~ls~~~i~~~l~--~I~~~~---~~~~~~vg~LT~~~Rd~Wa~~r~~L~ 54 (87)
+-|++..|..++.+.|...|. ++..+- .........+|..+|...+..-++++
T Consensus 71 a~vl~~rG~~yt~~nI~~~L~~R~~~~~lR~~G~~~~gpk~~~~~d~~~F~~~L~~~l 128 (130)
T PF02639_consen 71 AYVLNPRGKEYTKENIDELLAMRHLMAKLRRAGKRTKGPKKFTKKDRQRFANALDRLL 128 (130)
T ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 458999999999999987765 233222 11122345678888888877766654
No 10
>PF03568 Peptidase_C50: Peptidase family C50; InterPro: IPR005314 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C50 (separase family, clan CD). The active site residues for members of this family and family C14 occur in the same order in the sequence: H,C. The separases are caspase-like proteases, which plays a central role in the chromosome segregation. In yeast they cleave the rad21 subunit of the cohesin complex at the onset of anaphase. During most of the cell cycle, separase is inactivated by the securin/cut2 protein, which probably covers its active site. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0005634 nucleus
Probab=55.06 E-value=35 Score=25.34 Aligned_cols=57 Identities=25% Similarity=0.343 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHhhCCCCCCCcccccccchHHHHHHHHHHhcChhHHHHHHHHHhhce
Q psy7502 13 TEEELTSQFMKILESQPSQVNPVGILTTQRRDMWAESWDILQKDEQNRANLDLIEKSLI 71 (87)
Q Consensus 13 s~~~i~~~l~~I~~~~~~~~~~vg~LT~~~Rd~Wa~~r~~L~~~~~N~~~L~~Ie~alf 71 (87)
....+...|+.|++.+.........-|..+|..|-+-|..| +..=+.-|+.||...|
T Consensus 37 ~~~~~~~el~~Ii~es~~s~~~~~~~t~~~kk~WW~~R~~L--D~rL~~LL~~iE~~wL 93 (383)
T PF03568_consen 37 DEEEALEELQSIIEESNESTVTSKIKTKEDKKKWWKERKAL--DSRLKDLLENIENSWL 93 (383)
T ss_pred cHHHHHHHHHHHHHhhhhhhcccccCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 34448899999999765432223345667899999999999 4445567788887443
No 11
>PF07023 DUF1315: Protein of unknown function (DUF1315); InterPro: IPR009749 This family consists of several bacterial proteins of around 90 residues in length. The function of this family is unknown.
Probab=46.96 E-value=27 Score=21.26 Aligned_cols=20 Identities=15% Similarity=0.160 Sum_probs=18.0
Q ss_pred CCCcccCHHHHHHHHHHHHh
Q psy7502 7 ENATRYTEEELTSQFMKILE 26 (87)
Q Consensus 7 ~~g~~ls~~~i~~~l~~I~~ 26 (87)
.+|..||+++-+..++.|+-
T Consensus 26 pDG~~LT~eQre~~mQaVm~ 45 (93)
T PF07023_consen 26 PDGRALTPEQRESCMQAVML 45 (93)
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 48999999999999999975
No 12
>PRK11162 mltA murein transglycosylase A; Provisional
Probab=46.03 E-value=47 Score=24.91 Aligned_cols=54 Identities=11% Similarity=0.181 Sum_probs=36.9
Q ss_pred cceecCCCcccCHHHHHHHHHHHHhhCCCCCCCcccccccchHHHHHHHHHH---hcChhHHHHHHHH
Q psy7502 2 RLTYGENATRYTEEELTSQFMKILESQPSQVNPVGILTTQRRDMWAESWDIL---QKDEQNRANLDLI 66 (87)
Q Consensus 2 ~~v~~~~g~~ls~~~i~~~l~~I~~~~~~~~~~vg~LT~~~Rd~Wa~~r~~L---~~~~~N~~~L~~I 66 (87)
|+..+.++++....++..|+..|...+.. |+.. |..+++.+ +..+.+.+.|...
T Consensus 44 v~~~~~~~~~~n~~~f~~q~~~~~~~~~~-------l~~~----~~~~~~~~~~~~~~~~~~~~l~~~ 100 (355)
T PRK11162 44 VNQPNASGKPINAGDFAEQVNQIRNSSPR-------LYGR----YSNTYNAVQEWLLAGGDTRELRQF 100 (355)
T ss_pred cccccccCCccCHHHHHHHHHHHHHHCHH-------HHHH----HHHHHHHHHHHHHcCCCHHHHhhC
Confidence 56677778999999999999999998753 3332 55544444 3344466677553
No 13
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=44.93 E-value=45 Score=21.88 Aligned_cols=25 Identities=12% Similarity=0.282 Sum_probs=21.4
Q ss_pred eecCCCcccCHHHHHHHHHHHHhhC
Q psy7502 4 TYGENATRYTEEELTSQFMKILESQ 28 (87)
Q Consensus 4 v~~~~g~~ls~~~i~~~l~~I~~~~ 28 (87)
++|+.|+.++..++...|+.-....
T Consensus 72 ~LDe~Gk~~sS~~fA~~l~~~~~~g 96 (157)
T PRK00103 72 ALDERGKQLSSEEFAQELERWRDDG 96 (157)
T ss_pred EEcCCCCcCCHHHHHHHHHHHHhcC
Confidence 5899999999999999999876554
No 14
>COG1671 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.64 E-value=88 Score=20.65 Aligned_cols=54 Identities=15% Similarity=0.259 Sum_probs=38.3
Q ss_pred cceecCCCcccCHHHHHHHHH--HHHhhCC---CCCCCcccccccchHHHHHHHHHHhc
Q psy7502 2 RLTYGENATRYTEEELTSQFM--KILESQP---SQVNPVGILTTQRRDMWAESWDILQK 55 (87)
Q Consensus 2 ~~v~~~~g~~ls~~~i~~~l~--~I~~~~~---~~~~~vg~LT~~~Rd~Wa~~r~~L~~ 55 (87)
+-|+++.|++++++.|-..|. ++..+-. .....-..++..+|...+....+++.
T Consensus 86 ~~v~~prGr~y~~~nI~~~L~~R~~~~~lR~~G~~~~gp~~~~~rDr~~F~~~ldr~~~ 144 (150)
T COG1671 86 AAVLNPRGRLYTEENIGERLAMRDFMAKLRRQGKKTGGPAAFSSRDRSRFANALDRLLS 144 (150)
T ss_pred CEEECCCCcccCHhHHHHHHHHHHHHHHHHHhccccCCCCccChHHHHHHHHHHHHHHH
Confidence 357889999999999987764 3443321 12235667899999988888777764
No 15
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=42.41 E-value=31 Score=22.54 Aligned_cols=27 Identities=15% Similarity=0.289 Sum_probs=20.5
Q ss_pred eecCCCcccCHHHHHHHHHHHHhhCCC
Q psy7502 4 TYGENATRYTEEELTSQFMKILESQPS 30 (87)
Q Consensus 4 v~~~~g~~ls~~~i~~~l~~I~~~~~~ 30 (87)
++|.+|+.++..++...|+........
T Consensus 72 ~Ld~~Gk~~sS~~fA~~l~~~~~~g~~ 98 (155)
T PF02590_consen 72 LLDERGKQLSSEEFAKKLERWMNQGKS 98 (155)
T ss_dssp EE-TTSEE--HHHHHHHHHHHHHTTS-
T ss_pred EEcCCCccCChHHHHHHHHHHHhcCCc
Confidence 689999999999999999999887643
No 16
>PHA00442 host recBCD nuclease inhibitor
Probab=39.70 E-value=50 Score=18.19 Aligned_cols=30 Identities=20% Similarity=0.350 Sum_probs=18.5
Q ss_pred cccchHHHHHHHHHHhcChhHHHHHHHHHh
Q psy7502 39 TTQRRDMWAESWDILQKDEQNRANLDLIEK 68 (87)
Q Consensus 39 T~~~Rd~Wa~~r~~L~~~~~N~~~L~~Ie~ 68 (87)
-+..|+.|.....++-+-..-.+.|+.+|+
T Consensus 8 VtitRd~wnd~q~yidsLek~~~~L~~Lea 37 (59)
T PHA00442 8 VTITRDAWNDMQGYIDSLEKDNEFLKALRA 37 (59)
T ss_pred eeecHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 455788898777666543344455665554
No 17
>CHL00130 rbcS ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit; Reviewed
Probab=38.13 E-value=34 Score=22.25 Aligned_cols=19 Identities=11% Similarity=0.142 Sum_probs=16.7
Q ss_pred ccCHHHHHHHHHHHHhhCC
Q psy7502 11 RYTEEELTSQFMKILESQP 29 (87)
Q Consensus 11 ~ls~~~i~~~l~~I~~~~~ 29 (87)
+||.++|.+|+++|+++.-
T Consensus 13 pLTdeqI~kQI~Y~i~~GW 31 (138)
T CHL00130 13 DLTDQQIEKQIQYAISKGW 31 (138)
T ss_pred CCCHHHHHHHHHHHHhcCC
Confidence 5899999999999999753
No 18
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=37.00 E-value=37 Score=20.75 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=16.2
Q ss_pred ccCHHHHHHHHHHHHhhC
Q psy7502 11 RYTEEELTSQFMKILESQ 28 (87)
Q Consensus 11 ~ls~~~i~~~l~~I~~~~ 28 (87)
+||.++|.+|+++++.+.
T Consensus 11 ~lt~~~i~~QI~yll~qG 28 (99)
T cd03527 11 PLTDEQIAKQIDYIISNG 28 (99)
T ss_pred CCCHHHHHHHHHHHHhCC
Confidence 589999999999999875
No 19
>KOG2463|consensus
Probab=35.73 E-value=30 Score=25.92 Aligned_cols=37 Identities=16% Similarity=0.164 Sum_probs=26.5
Q ss_pred ecCCCcccCHHHHHHHHHHHHhhCCCCCCCcccccccc
Q psy7502 5 YGENATRYTEEELTSQFMKILESQPSQVNPVGILTTQR 42 (87)
Q Consensus 5 ~~~~g~~ls~~~i~~~l~~I~~~~~~~~~~vg~LT~~~ 42 (87)
.|.+| -+++..|..++..-..-..+....||++|++-
T Consensus 178 ~DdDg-witp~ni~~~~~e~~al~~pe~~~Vac~TtDf 214 (376)
T KOG2463|consen 178 ADDDG-WITPSNITEAIIELGALNRPENQLVACLTTDF 214 (376)
T ss_pred ccccc-ccccchHHHHHHhhhcccccccceeeeecccH
Confidence 34566 78999999888776643333355899999974
No 20
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=34.93 E-value=55 Score=21.38 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=21.9
Q ss_pred eecCCCcccCHHHHHHHHHHHHhhC
Q psy7502 4 TYGENATRYTEEELTSQFMKILESQ 28 (87)
Q Consensus 4 v~~~~g~~ls~~~i~~~l~~I~~~~ 28 (87)
++|+.|+.++..++...|+...+..
T Consensus 70 ~LDe~Gk~~sS~~fA~~l~~~~~~g 94 (153)
T TIGR00246 70 TLDIPGKPWTTPQLADTLEKWKTDG 94 (153)
T ss_pred EEcCCCCcCCHHHHHHHHHHHhccC
Confidence 5899999999999999999886654
No 21
>PF12990 DUF3874: Domain of unknonw function from B. Theta Gene description (DUF3874); InterPro: IPR024450 This domain of unknown function if found in uncharacterised proteins from Bacteroides thetaiotaomicron and other Bacteroidetes.
Probab=34.90 E-value=39 Score=19.46 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=16.8
Q ss_pred cCCCcccCHHHHHHHHHHHHh
Q psy7502 6 GENATRYTEEELTSQFMKILE 26 (87)
Q Consensus 6 ~~~g~~ls~~~i~~~l~~I~~ 26 (87)
++.|..||+.+|...|++---
T Consensus 20 ~Ee~e~lsa~~If~~L~k~~~ 40 (73)
T PF12990_consen 20 GEEGEWLSAAEIFERLQKKSP 40 (73)
T ss_pred CccceeecHHHHHHHHHHhCc
Confidence 457889999999998887543
No 22
>PLN02289 ribulose-bisphosphate carboxylase small chain
Probab=32.56 E-value=46 Score=22.50 Aligned_cols=18 Identities=28% Similarity=0.429 Sum_probs=16.2
Q ss_pred ccCHHHHHHHHHHHHhhC
Q psy7502 11 RYTEEELTSQFMKILESQ 28 (87)
Q Consensus 11 ~ls~~~i~~~l~~I~~~~ 28 (87)
+|+.++|.+|+++++.+.
T Consensus 75 pLtdeqI~kQVeYli~~G 92 (176)
T PLN02289 75 DLTDEELAKEVDYLLRNK 92 (176)
T ss_pred CCCHHHHHHHHHHHHhCC
Confidence 588999999999999875
No 23
>PRK02539 hypothetical protein; Provisional
Probab=31.52 E-value=47 Score=19.86 Aligned_cols=18 Identities=22% Similarity=0.165 Sum_probs=15.5
Q ss_pred cceecCCCcccCHHHHHH
Q psy7502 2 RLTYGENATRYTEEELTS 19 (87)
Q Consensus 2 ~~v~~~~g~~ls~~~i~~ 19 (87)
+.|+|++|..+||.-+..
T Consensus 51 i~ivD~~G~dVTP~Klk~ 68 (85)
T PRK02539 51 IKIVDEEGNDVTPEKLRQ 68 (85)
T ss_pred ceEECCCCCCCCHHHHHH
Confidence 678999999999997765
No 24
>PF04937 DUF659: Protein of unknown function (DUF 659); InterPro: IPR007021 These are transposase-like proteins with no known function.
Probab=28.75 E-value=1.1e+02 Score=19.87 Aligned_cols=49 Identities=14% Similarity=0.093 Sum_probs=36.4
Q ss_pred ecCCCcccCHHHHHHHHHHHHhhCCCCCCCcccccccchHHHHHHHHHHhc
Q psy7502 5 YGENATRYTEEELTSQFMKILESQPSQVNPVGILTTQRRDMWAESWDILQK 55 (87)
Q Consensus 5 ~~~~g~~ls~~~i~~~l~~I~~~~~~~~~~vg~LT~~~Rd~Wa~~r~~L~~ 55 (87)
+|..+..-+.+-|+..|..+++.-... .|-...+++-..+.++++.|.+
T Consensus 66 vd~s~~~~~a~~l~~ll~~vIeeVG~~--nVvqVVTDn~~~~~~a~~~L~~ 114 (153)
T PF04937_consen 66 VDASSIIKTAEYLFELLDEVIEEVGEE--NVVQVVTDNASNMKKAGKLLME 114 (153)
T ss_pred EecccccccHHHHHHHHHHHHHHhhhh--hhhHHhccCchhHHHHHHHHHh
Confidence 455556778889999999999875332 4555567888889999888875
No 25
>PRK01546 hypothetical protein; Provisional
Probab=27.73 E-value=64 Score=19.01 Aligned_cols=19 Identities=21% Similarity=0.134 Sum_probs=15.6
Q ss_pred cceecCCCcccCHHHHHHH
Q psy7502 2 RLTYGENATRYTEEELTSQ 20 (87)
Q Consensus 2 ~~v~~~~g~~ls~~~i~~~ 20 (87)
+.|+|++|.-+||.-+...
T Consensus 52 i~vvD~~G~dVTP~Klk~~ 70 (79)
T PRK01546 52 IKVVNEQGTDVTPAKLKAL 70 (79)
T ss_pred ceEECCCCCCCCHHHHHHH
Confidence 6789999999999876643
No 26
>PF08339 RTX_C: RTX C-terminal domain; InterPro: IPR013550 This domain describes the C-terminal region of various bacterial haemolysins and leukotoxins, which belong to the RTX family of toxins. These are produced by various Gram negative bacteria, such as Escherichia coli (P09983 from SWISSPROT) and Actinobacillus pleuropneumoniae (P15377 from SWISSPROT). RTX toxins may interact with lipopolysaccharide (LPS) to functionally impair and eventually kill leukocytes []. This region is found in association with the RTX N-terminal domain (IPR003995 from INTERPRO) and multiple hemolysin-type calcium-binding repeats (IPR001343 from INTERPRO).
Probab=26.84 E-value=33 Score=22.47 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=14.6
Q ss_pred eecCCCcccCHHHHHHHHH
Q psy7502 4 TYGENATRYTEEELTSQFM 22 (87)
Q Consensus 4 v~~~~g~~ls~~~i~~~l~ 22 (87)
++|.+|+.+++++|...|+
T Consensus 53 IidKnG~~ITs~qld~l~~ 71 (145)
T PF08339_consen 53 IIDKNGRRITSDQLDKLLE 71 (145)
T ss_pred HhcCCCCEEcHhHHHHHhc
Confidence 5788888888888776654
No 27
>KOG2041|consensus
Probab=25.81 E-value=50 Score=27.63 Aligned_cols=47 Identities=32% Similarity=0.480 Sum_probs=33.7
Q ss_pred CcccccccchHHHHHHHHHHhcChhHHHHHHHHHhhceeEecc--CCCCCCCCCC
Q psy7502 34 PVGILTTQRRDMWAESWDILQKDEQNRANLDLIEKSLITICLD--SVPLSPSFIG 86 (87)
Q Consensus 34 ~vg~LT~~~Rd~Wa~~r~~L~~~~~N~~~L~~Ie~alf~l~LD--~~~~p~~~~~ 86 (87)
-.|++|++.||.|+.-+. ..|...|...|+..+.+|-- . ..|.+-+|
T Consensus 581 l~~~~~~errDVWd~~Wa-----~dNp~llAlmeKtrmyifrgndp-eEp~s~sG 629 (1189)
T KOG2041|consen 581 LKLIYTSERRDVWDYEWA-----QDNPNLLALMEKTRMYIFRGNDP-EEPSSVSG 629 (1189)
T ss_pred eeeeehhhhhhhhhhhhc-----cCCchHHhhhhhceEEEecCcCc-cccccccc
Confidence 567999999999985443 34778899999888877643 3 35555444
No 28
>KOG2222|consensus
Probab=25.71 E-value=71 Score=25.48 Aligned_cols=23 Identities=26% Similarity=0.228 Sum_probs=17.3
Q ss_pred eecCCCcccCHHHHH-HHHHHHHh
Q psy7502 4 TYGENATRYTEEELT-SQFMKILE 26 (87)
Q Consensus 4 v~~~~g~~ls~~~i~-~~l~~I~~ 26 (87)
-+|++|++++|+++. +..|.|-+
T Consensus 685 rldedgkiltpeellfr~vq~in~ 708 (848)
T KOG2222|consen 685 RLDEDGKILTPEELLFRCVQAIND 708 (848)
T ss_pred ecccCCcccCHHHHHHHHHHHHhc
Confidence 368899999999965 66666644
No 29
>PF14980 TIP39: TIP39 peptide
Probab=24.88 E-value=39 Score=18.08 Aligned_cols=18 Identities=28% Similarity=0.536 Sum_probs=13.1
Q ss_pred CcccccccchHHHHHHHH
Q psy7502 34 PVGILTTQRRDMWAESWD 51 (87)
Q Consensus 34 ~vg~LT~~~Rd~Wa~~r~ 51 (87)
.--.||+.+|..|-..+-
T Consensus 26 rarLl~amER~~WLnSYM 43 (51)
T PF14980_consen 26 RARLLTAMERQKWLNSYM 43 (51)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345689999999975543
No 30
>PRK04570 cell division protein ZipA; Provisional
Probab=24.69 E-value=80 Score=22.47 Aligned_cols=26 Identities=0% Similarity=0.029 Sum_probs=21.0
Q ss_pred ceecCCCcccCHHHHHHHHHHHHhhC
Q psy7502 3 LTYGENATRYTEEELTSQFMKILESQ 28 (87)
Q Consensus 3 ~v~~~~g~~ls~~~i~~~l~~I~~~~ 28 (87)
.|+|++.+++|+..|+..-++|.+-.
T Consensus 204 ~VLDe~R~~lT~Q~iehyRqrIreye 229 (243)
T PRK04570 204 VVLDDSRNALGRQRIAHIRDELRAYD 229 (243)
T ss_pred EEecCCcccCCHHHHHHHHHHHHHHH
Confidence 47888888899999988888887743
No 31
>PF15173 FAM180: FAM180 family
Probab=24.36 E-value=73 Score=20.72 Aligned_cols=42 Identities=17% Similarity=0.309 Sum_probs=23.3
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCCcccccccchHHHHHHHHHHhc
Q psy7502 11 RYTEEELTSQFMKILESQPSQVNPVGILTTQRRDMWAESWDILQK 55 (87)
Q Consensus 11 ~ls~~~i~~~l~~I~~~~~~~~~~vg~LT~~~Rd~Wa~~r~~L~~ 55 (87)
++++.++++.+-..+.-+.. -..+.....|+.||...-.|.+
T Consensus 90 ~L~~~DFErtlLTlvy~ayr---~~~s~~~~qr~~Wa~~f~~L~q 131 (137)
T PF15173_consen 90 PLSPEDFERTLLTLVYTAYR---LANSSEGHQRDRWAQSFVSLFQ 131 (137)
T ss_pred CCCHHHHHHHHHHHHHHHHH---HHHhhhHHHHHHHHHHHHHHHH
Confidence 55555555554443332211 1223356789999988777653
No 32
>PF06584 DIRP: DIRP; InterPro: IPR010561 DIRP (Domain in Rb-related Pathway) is postulated to be involved in the Rb-related pathway, which is encoded by multiple eukaryotic genomes and is present in proteins including lin-9 of Caenorhabditis elegans, aly of Drosophila melanogaster and mustard weed. Studies of lin-9 and aly of fruit fly proteins containing DIRP suggest that this domain might be involved in development. Aly, lin-9, act in parallel to, or downstream of, activation of MAPK by the RTK-Ras signalling pathway.
Probab=23.29 E-value=67 Score=19.97 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=17.3
Q ss_pred CcccccccchHHHHHHHHHHhc
Q psy7502 34 PVGILTTQRRDMWAESWDILQK 55 (87)
Q Consensus 34 ~vg~LT~~~Rd~Wa~~r~~L~~ 55 (87)
|.+..+...|.+|..+|..|-+
T Consensus 24 p~l~t~~ltR~eW~~IRr~mGK 45 (109)
T PF06584_consen 24 PLLKTRKLTRVEWQKIRRSMGK 45 (109)
T ss_pred CcccCCccCHHHHHHHHHHcCC
Confidence 5555678899999999988743
No 33
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=23.07 E-value=1.8e+02 Score=17.41 Aligned_cols=47 Identities=21% Similarity=0.232 Sum_probs=29.3
Q ss_pred ecCCCcccCHHHHHHHHHHHHhhCCCCCCCcccccccchHHHHHHHHHHhc
Q psy7502 5 YGENATRYTEEELTSQFMKILESQPSQVNPVGILTTQRRDMWAESWDILQK 55 (87)
Q Consensus 5 ~~~~g~~ls~~~i~~~l~~I~~~~~~~~~~vg~LT~~~Rd~Wa~~r~~L~~ 55 (87)
+...|-.++.++|..-|..|-+-++=- +.=| +.+++.|.++++.|..
T Consensus 18 Lk~rGi~v~~~~L~~f~~~i~~~~PWF-~~eG---~l~~~~W~kvG~~l~~ 64 (90)
T PF02337_consen 18 LKERGIRVKKKDLINFLSFIDKVCPWF-PEEG---TLDLDNWKKVGEELKR 64 (90)
T ss_dssp HHCCT----HHHHHHHHHHHHHHTT-S-S--S---S-HHHHHHHHHHHHHH
T ss_pred HHHcCeeecHHHHHHHHHHHHHhCCCC-CCCC---CcCHHHHHHHHHHHHH
Confidence 344666788899999999888876421 1223 3678999999999954
No 34
>PF10908 DUF2778: Protein of unknown function (DUF2778); InterPro: IPR021225 This is a bacterial family of uncharacterised proteins.
Probab=22.46 E-value=71 Score=20.19 Aligned_cols=23 Identities=13% Similarity=0.040 Sum_probs=20.7
Q ss_pred CCcccccccchHHHHHHHHHHhc
Q psy7502 33 NPVGILTTQRRDMWAESWDILQK 55 (87)
Q Consensus 33 ~~vg~LT~~~Rd~Wa~~r~~L~~ 55 (87)
..-|+.|-.++..|..+|..|.+
T Consensus 89 ~S~GCIT~~~~~dF~~lr~~l~~ 111 (120)
T PF10908_consen 89 ISEGCITFKSYSDFLRLRKALLS 111 (120)
T ss_pred cccccEeecCHHHHHHHHHHHhc
Confidence 36799999999999999999975
No 35
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=21.88 E-value=1.1e+02 Score=16.69 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=14.8
Q ss_pred CCcccCHHHHHHHHHHHHhhC
Q psy7502 8 NATRYTEEELTSQFMKILESQ 28 (87)
Q Consensus 8 ~g~~ls~~~i~~~l~~I~~~~ 28 (87)
+|+.++.+++...+..|++..
T Consensus 11 ~g~~Ls~~e~~~~~~~i~~g~ 31 (66)
T PF02885_consen 11 DGEDLSREEAKAAFDAILDGE 31 (66)
T ss_dssp TT----HHHHHHHHHHHHTTS
T ss_pred cCCCCCHHHHHHHHHHHHcCC
Confidence 578899999999999999864
No 36
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=21.83 E-value=53 Score=14.90 Aligned_cols=19 Identities=16% Similarity=0.198 Sum_probs=12.6
Q ss_pred eecCCCc-ccCHHHHHHHHH
Q psy7502 4 TYGENAT-RYTEEELTSQFM 22 (87)
Q Consensus 4 v~~~~g~-~ls~~~i~~~l~ 22 (87)
.+|.++. .++..|+...|.
T Consensus 8 ~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 8 MFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HH-TTSSSEEEHHHHHHHHH
T ss_pred HHCCCCCCcCcHHHHHHHHH
Confidence 3565543 788888887776
No 37
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.75 E-value=1e+02 Score=19.80 Aligned_cols=19 Identities=21% Similarity=0.609 Sum_probs=13.0
Q ss_pred cccccccc-hHHHHHHHHHH
Q psy7502 35 VGILTTQR-RDMWAESWDIL 53 (87)
Q Consensus 35 vg~LT~~~-Rd~Wa~~r~~L 53 (87)
.|+++++. +-.|-.+|+.+
T Consensus 62 ~GvF~seqA~~dw~~~~~~~ 81 (127)
T PF06163_consen 62 SGVFPSEQARKDWDKARKKL 81 (127)
T ss_pred ccccccHHHHHHHHHhHHhh
Confidence 37777764 66677777766
No 38
>PF00101 RuBisCO_small: Ribulose bisphosphate carboxylase, small chain; InterPro: IPR000894 RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) is a bifunctional enzyme that catalyses both the carboxylation and oxygenation of ribulose-1,5-bisphosphate (RuBP) [], thus fixing carbon dioxide as the first step of the Calvin cycle. RuBisCO is the major protein in the stroma of chloroplasts, and in higher plants exists as a complex of 8 large and 8 small subunits. The function of the small subunit is unknown []. While the large subunit is coded for by a single gene, the small subunit is coded for by several different genes, which are distributed in a tissue specific manner. They are transcriptionally regulated by light receptor phytochrome [], which results in RuBisCO being more abundant during the day when it is required. The RuBisCo small subunit consists of a central four-stranded beta-sheet, with two helices packed against it [].; PDB: 1BWV_W 1IWA_P 3AXM_X 1WDD_S 3AXK_T 1IR2_K 1RBL_N 1UZH_J 1RSC_P 1UW9_C ....
Probab=21.47 E-value=98 Score=18.84 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=13.7
Q ss_pred ccCHHHHHHHHHHHHhhC
Q psy7502 11 RYTEEELTSQFMKILESQ 28 (87)
Q Consensus 11 ~ls~~~i~~~l~~I~~~~ 28 (87)
+|+.++|..|++.++...
T Consensus 10 ~l~~~~i~~Qv~~ll~qG 27 (99)
T PF00101_consen 10 PLTDEEIAKQVRYLLSQG 27 (99)
T ss_dssp ---HHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHhhhhcC
Confidence 578899999999999864
No 39
>PF08120 Toxin_32: Tamulustoxin family; InterPro: IPR012636 This family consists of the tamulustoxins, which are found in the venom of Mesobuthus tamulus (Eastern Indian scorpion) (Buthus tamulus). Tamulustoxin shares no similarity with other scorpion venom toxins, although the positions of its six cysteine residues suggest that it shares the same structural scaffold. Tamulustoxin acts as a potassium channel blocker [].; GO: 0019870 potassium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region
Probab=21.39 E-value=69 Score=15.48 Aligned_cols=18 Identities=11% Similarity=0.205 Sum_probs=11.7
Q ss_pred hceeEeccCC--CCCCCCCC
Q psy7502 69 SLITICLDSV--PLSPSFIG 86 (87)
Q Consensus 69 alf~l~LD~~--~~p~~~~~ 86 (87)
.-|++|.-|- .+|.+|.+
T Consensus 2 chfvicttdcrrnspgtyge 21 (35)
T PF08120_consen 2 CHFVICTTDCRRNSPGTYGE 21 (35)
T ss_pred ceEEEeccccccCCCCchhh
Confidence 3588887752 47777753
No 40
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=21.10 E-value=87 Score=21.40 Aligned_cols=31 Identities=13% Similarity=0.286 Sum_probs=23.0
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCCccccccc
Q psy7502 11 RYTEEELTSQFMKILESQPSQVNPVGILTTQ 41 (87)
Q Consensus 11 ~ls~~~i~~~l~~I~~~~~~~~~~vg~LT~~ 41 (87)
+++++.|..||+.++++-+...-.+|.|.+.
T Consensus 49 ~~~~~~~~~q~~~~~~d~~~~aikiG~l~~~ 79 (254)
T TIGR00097 49 PIPPDFVEAQLDAVFSDIPVDAAKTGMLASA 79 (254)
T ss_pred ECCHHHHHHHHHHHHhCCCCCEEEECCcCCH
Confidence 5788999999999998654333367777654
No 41
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=21.09 E-value=85 Score=21.34 Aligned_cols=23 Identities=13% Similarity=0.118 Sum_probs=14.3
Q ss_pred HHHHHHHhc-ChhHHHHHHHHHhh
Q psy7502 47 AESWDILQK-DEQNRANLDLIEKS 69 (87)
Q Consensus 47 a~~r~~L~~-~~~N~~~L~~Ie~a 69 (87)
-++|.+|.+ ...+.++.+.||.|
T Consensus 10 q~Arn~ll~~y~gd~~~~~~IEaA 33 (194)
T PF11833_consen 10 QAARNRLLAQYAGDEKSREAIEAA 33 (194)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHH
Confidence 356666664 45566677777754
No 42
>smart00553 SEP Domain present in Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47.
Probab=20.85 E-value=76 Score=19.10 Aligned_cols=16 Identities=25% Similarity=0.304 Sum_probs=13.4
Q ss_pred ChhHHHHHHHHHhhce
Q psy7502 56 DEQNRANLDLIEKSLI 71 (87)
Q Consensus 56 ~~~N~~~L~~Ie~alf 71 (87)
+|.|++-|+.|.++.+
T Consensus 26 dP~N~~FL~~I~~G~~ 41 (93)
T smart00553 26 DPENAEFLESIRRGEA 41 (93)
T ss_pred CHhHHHHHHHHHcCCC
Confidence 7899999999887764
No 43
>COG3327 PaaX Phenylacetic acid-responsive transcriptional repressor [Transcription]
Probab=20.45 E-value=2e+02 Score=20.96 Aligned_cols=47 Identities=13% Similarity=0.258 Sum_probs=31.6
Q ss_pred CCcccCHHHHHHHHHHHHhhCCCCCCCcccccccch-------------HHHHHHHHHHhc
Q psy7502 8 NATRYTEEELTSQFMKILESQPSQVNPVGILTTQRR-------------DMWAESWDILQK 55 (87)
Q Consensus 8 ~g~~ls~~~i~~~l~~I~~~~~~~~~~vg~LT~~~R-------------d~Wa~~r~~L~~ 55 (87)
+|--++|..|+.+++..+++.... ..|-.+|++.+ +.|.+++..+++
T Consensus 130 ~s~w~sPn~i~d~v~~~le~~~~a-~~v~~~~a~~~~epk~l~e~CWdL~e~~qaY~~Fl~ 189 (291)
T COG3327 130 ESVWISPNPIEDNVDTLLESAVGA-SCVRMFTADYLGEPKALAEKCWDLSEWNQAYRRFLQ 189 (291)
T ss_pred cccccCCCchhHHHHHHHHhhcCc-chhhhhhhhhhhchHHHHHHhcCchHHHHHHHHHHH
Confidence 345688888999998888865432 25666776653 467777777664
No 44
>COG3139 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.35 E-value=1.4e+02 Score=17.88 Aligned_cols=20 Identities=10% Similarity=0.187 Sum_probs=17.4
Q ss_pred CCCcccCHHHHHHHHHHHHh
Q psy7502 7 ENATRYTEEELTSQFMKILE 26 (87)
Q Consensus 7 ~~g~~ls~~~i~~~l~~I~~ 26 (87)
++|..||.++-+..|+.++-
T Consensus 28 PdG~~LtqeQke~clQaVml 47 (90)
T COG3139 28 PDGVALTQEQKENCLQAVML 47 (90)
T ss_pred CCCCcCCHHHHHHHHHHHHH
Confidence 47899999999999998864
No 45
>PRK03427 cell division protein ZipA; Provisional
Probab=20.22 E-value=1.4e+02 Score=22.30 Aligned_cols=25 Identities=16% Similarity=0.153 Sum_probs=21.2
Q ss_pred ceecCCCcccCHHHHHHHHHHHHhh
Q psy7502 3 LTYGENATRYTEEELTSQFMKILES 27 (87)
Q Consensus 3 ~v~~~~g~~ls~~~i~~~l~~I~~~ 27 (87)
.|+|.+.++||+..++...++|.+-
T Consensus 304 ~VlDd~R~~LT~q~le~yr~rIr~~ 328 (333)
T PRK03427 304 VVLDDQRRMMTPQKLREYQDRIREV 328 (333)
T ss_pred EEECCCCCcCCHHHHHHHHHHHHHH
Confidence 4789999999999999888888763
No 46
>PF14066 DUF4256: Protein of unknown function (DUF4256)
Probab=20.18 E-value=1.4e+02 Score=20.06 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=21.9
Q ss_pred HHHHHHHHHhcChhHHHHHHHHHhh
Q psy7502 45 MWAESWDILQKDEQNRANLDLIEKS 69 (87)
Q Consensus 45 ~Wa~~r~~L~~~~~N~~~L~~Ie~a 69 (87)
.|+.+...|..+|..--+|..+|..
T Consensus 20 ~W~~V~~kL~~~p~kLwsL~eME~T 44 (173)
T PF14066_consen 20 EWAKVQAKLEANPEKLWSLNEMERT 44 (173)
T ss_pred cHHHHHHHHHcChHHHHHHHHHHHh
Confidence 5999999999899888999888854
Done!