Query psy7502
Match_columns 87
No_of_seqs 150 out of 786
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 20:00:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7502.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7502hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nm8_A Carnitine O-acetyltrans 99.9 2.7E-24 9.2E-29 163.9 9.2 81 1-82 192-273 (616)
2 2deb_A CPT II, carnitine O-pal 99.9 9.7E-24 3.3E-28 161.7 8.2 82 1-84 248-330 (653)
3 1xl7_A COT, peroxisomal carnit 99.9 1.5E-23 5E-28 159.8 9.0 79 1-81 202-283 (612)
4 1t1u_A Choline O-acetyltransfe 99.9 2.3E-23 8E-28 159.3 7.8 79 1-81 205-286 (639)
5 1f46_A Cell division protein Z 54.2 13 0.00046 22.9 3.3 24 3-26 111-134 (140)
6 2a6q_A Antitoxin YEFM; YEFM, a 46.4 35 0.0012 18.7 4.5 52 11-64 6-68 (86)
7 2yh5_A DAPX protein, BAMC; lip 46.2 21 0.00071 21.7 3.2 23 2-24 91-113 (127)
8 1rbl_M Ribulose 1,5 bisphospha 42.1 19 0.00066 21.5 2.5 18 11-28 19-36 (109)
9 1svd_M Ribulose bisphosphate c 39.6 22 0.00076 21.3 2.5 18 11-28 21-38 (110)
10 3zxw_B Ribulose bisphosphate c 39.0 23 0.00078 21.5 2.5 18 11-28 18-35 (118)
11 2ywi_A Hypothetical conserved 38.3 32 0.0011 20.9 3.2 27 12-38 160-189 (196)
12 4fak_A Ribosomal RNA large sub 36.6 19 0.00066 22.9 2.0 26 4-29 79-104 (163)
13 1to0_A Hypothetical UPF0247 pr 34.7 23 0.00077 22.6 2.1 26 3-28 74-99 (167)
14 1o6d_A Hypothetical UPF0247 pr 33.9 29 0.00099 22.1 2.5 26 3-28 69-94 (163)
15 1ns5_A Hypothetical protein YB 33.2 28 0.00096 21.9 2.3 26 3-28 70-95 (155)
16 1wdd_S Ribulose bisphosphate c 32.1 34 0.0012 21.1 2.5 18 11-28 20-37 (128)
17 1bxn_I Rubisco, protein (ribul 31.8 34 0.0012 21.4 2.5 18 11-28 13-30 (139)
18 1bwv_S Rubisco, protein (ribul 31.7 34 0.0012 21.3 2.5 18 11-28 13-30 (138)
19 1gk8_I Ribulose bisphosphate c 31.7 34 0.0012 21.4 2.5 18 11-28 20-37 (140)
20 4dbg_B Ring finger protein 31; 30.9 43 0.0015 21.4 2.9 13 11-23 28-40 (162)
21 3ro2_B Peptide of nuclear mito 30.7 25 0.00085 15.7 1.3 16 71-87 4-19 (28)
22 2ahq_A Sigma-54, RNA polymeras 30.5 72 0.0025 17.6 4.4 47 8-54 12-67 (76)
23 4f0h_B Ribulose bisphosphate c 30.5 37 0.0013 21.2 2.5 18 11-28 13-30 (138)
24 2yka_B ORF57 protein, 52 kDa i 34.1 12 0.00042 16.5 0.0 16 36-51 1-17 (26)
25 2fqm_A Phosphoprotein, P prote 27.7 26 0.0009 19.4 1.3 23 33-56 24-46 (75)
26 2l5o_A Putative thioredoxin; s 27.3 90 0.0031 17.7 4.1 27 4-30 112-145 (153)
27 1vaz_A NSFL1 cofactor P47; bet 27.2 35 0.0012 19.6 1.8 21 56-76 45-65 (88)
28 3u5r_E Uncharacterized protein 26.7 63 0.0021 20.3 3.3 26 13-38 174-202 (218)
29 2lrn_A Thiol:disulfide interch 26.6 52 0.0018 19.0 2.7 27 4-30 115-145 (152)
30 3k6e_A CBS domain protein; str 24.8 33 0.0011 20.6 1.5 25 3-27 119-146 (156)
31 3mb2_B 4-oxalocrotonate tautom 23.2 1E+02 0.0036 17.0 3.2 42 1-42 2-60 (72)
32 3g5o_A Uncharacterized protein 22.7 61 0.0021 18.8 2.4 52 11-64 10-72 (108)
33 2rod_B NOXA, noxaa; MCL-1, apo 21.0 38 0.0013 14.8 0.9 14 14-27 4-17 (27)
34 2v2f_A Penicillin binding prot 20.0 34 0.0012 14.5 0.7 10 4-13 9-18 (26)
No 1
>1nm8_A Carnitine O-acetyltransferase; two equally sized domains, anti-parallel beta-strand; 1.60A {Homo sapiens} SCOP: c.43.1.3 c.43.1.3 PDB: 1s5o_A* 2h3u_A* 2h3p_A* 1t7q_A* 1t7n_A 1t7o_A* 1ndb_A 1ndf_A* 1ndi_A* 2h3w_A*
Probab=99.91 E-value=2.7e-24 Score=163.93 Aligned_cols=81 Identities=35% Similarity=0.584 Sum_probs=75.3
Q ss_pred CcceecCCCcccCHHHHHHHHHHHHhhCCCCC-CCcccccccchHHHHHHHHHHhcChhHHHHHHHHHhhceeEeccCCC
Q psy7502 1 MRLTYGENATRYTEEELTSQFMKILESQPSQV-NPVGILTTQRRDMWAESWDILQKDEQNRANLDLIEKSLITICLDSVP 79 (87)
Q Consensus 1 ~~~v~~~~g~~ls~~~i~~~l~~I~~~~~~~~-~~vg~LT~~~Rd~Wa~~r~~L~~~~~N~~~L~~Ie~alf~l~LD~~~ 79 (87)
+|+|+|++|+++++.+|+.||++|++++...+ .+||+||+++|+.||++|++|++++.|+++|+.||+|+|+||||+ .
T Consensus 192 ~v~v~~~~g~~ls~~ei~~qL~~I~~~~~~~~~~~vg~LTt~~R~~WA~~R~~L~~~~~N~~~L~~IesAlFvvcLDd-~ 270 (616)
T 1nm8_A 192 ELDVYHSDGTPLTADQIFVQLEKIWNSSLQTNKEPVGILTSNHRNSWAKAYNTLIKDKVNRDSVRSIQKSIFTVCLDA-T 270 (616)
T ss_dssp EEECBCTTSCBCCHHHHHHHHHHHHHTCCCCCSCCGGGGGGSCHHHHHHHHHHHTTSHHHHHHHHHHHHSSCEEEEEC-C
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHhcccccCCCCccccccCCchHHHHHHHHHhcCchHHHHHHHHHhCeEEEEecc-C
Confidence 47899999999999999999999999776656 699999999999999999999999999999999999999999999 7
Q ss_pred CCC
Q psy7502 80 LSP 82 (87)
Q Consensus 80 ~p~ 82 (87)
.|.
T Consensus 271 ~p~ 273 (616)
T 1nm8_A 271 MPR 273 (616)
T ss_dssp CSC
T ss_pred Ccc
Confidence 773
No 2
>2deb_A CPT II, carnitine O-palmitoyltransferase II, mitochondrial; central six-stranded beta-sheet; HET: BOG COA PLM; 1.60A {Rattus norvegicus} PDB: 2fw3_A* 2fyo_A 2rcu_A* 2h4t_A*
Probab=99.89 E-value=9.7e-24 Score=161.73 Aligned_cols=82 Identities=22% Similarity=0.344 Sum_probs=74.1
Q ss_pred CcceecCCCcccCHHHHHHHHHHHHhhCCCC-CCCcccccccchHHHHHHHHHHhcChhHHHHHHHHHhhceeEeccCCC
Q psy7502 1 MRLTYGENATRYTEEELTSQFMKILESQPSQ-VNPVGILTTQRRDMWAESWDILQKDEQNRANLDLIEKSLITICLDSVP 79 (87)
Q Consensus 1 ~~~v~~~~g~~ls~~~i~~~l~~I~~~~~~~-~~~vg~LT~~~Rd~Wa~~r~~L~~~~~N~~~L~~Ie~alf~l~LD~~~ 79 (87)
+|+|+|++|+++++.+|+.||++|+++.... ..+||+||+++|+.||++|++|+ ++.|+++|+.||+|+|+||||+ .
T Consensus 248 ~v~v~d~~g~~ls~~ei~~qL~~I~~~~~~~~~~~vg~LTt~~Rd~WA~~R~~L~-~~~N~~sL~~IesAlFvvcLDd-~ 325 (653)
T 2deb_A 248 VFDVLDQDGNIVNPLEIQAHLKYILSDSSPVPEFPVAYLTSENRDVWAELRQKLI-FDGNEETLKKVDSAVFCLCLDD-F 325 (653)
T ss_dssp EEESBCTTSCBCCHHHHHHHHHHHHHCCCCCCSSCGGGGGGSCHHHHHHHHHHHH-HTTCHHHHHHHHHSSCEEEECS-S
T ss_pred EEEEECCCCCcCCHHHHHHHHHHHHhccccccCCCccccccCCchHHHHHHHHHh-ChhhHHHHHHHHhceEEEEecC-C
Confidence 4789999999999999999999999964333 45999999999999999999999 8899999999999999999999 8
Q ss_pred CCCCC
Q psy7502 80 LSPSF 84 (87)
Q Consensus 80 ~p~~~ 84 (87)
.|.+.
T Consensus 326 ~~~~~ 330 (653)
T 2deb_A 326 PMKDL 330 (653)
T ss_dssp CCCSH
T ss_pred CCCCH
Confidence 77653
No 3
>1xl7_A COT, peroxisomal carnitine O-octanoyltransferase; selenomethionine, hepes; HET: EPE; 2.00A {Mus musculus} SCOP: c.43.1.3 c.43.1.3 PDB: 1xl8_A* 1xmd_A* 1xmc_A*
Probab=99.89 E-value=1.5e-23 Score=159.76 Aligned_cols=79 Identities=22% Similarity=0.270 Sum_probs=72.4
Q ss_pred CcceecCCCcccCHHHHHHHHHHHHhh--CCCCCCCcccccccchHHHHHHHHHHhc-ChhHHHHHHHHHhhceeEeccC
Q psy7502 1 MRLTYGENATRYTEEELTSQFMKILES--QPSQVNPVGILTTQRRDMWAESWDILQK-DEQNRANLDLIEKSLITICLDS 77 (87)
Q Consensus 1 ~~~v~~~~g~~ls~~~i~~~l~~I~~~--~~~~~~~vg~LT~~~Rd~Wa~~r~~L~~-~~~N~~~L~~Ie~alf~l~LD~ 77 (87)
+|+|++ +|+++++.+|+.||++|+++ ....+.+||+||+++|+.||++|++|++ ++.|+++|+.||+|+|+||||+
T Consensus 202 ~v~v~~-~g~~ls~~el~~ql~~I~~~~~~~~~~~~vg~LTt~~R~~WA~~R~~L~~~~~~N~~~L~~IesAlFvvcLDd 280 (612)
T 1xl7_A 202 VFDVLH-EGCLITPPELLRQLTYIHKKCSNEPVGPSIAALTSEERTRWAKAREYLISLDPENLTLLEKIQTSLFVYSIED 280 (612)
T ss_dssp EEESEE-TTEECCHHHHHHHHHHHHHHHHTSCCCCCGGGGGGSCHHHHHHHHHHHHHHCHHHHHHHHHHHHSSCEEEECC
T ss_pred EEEEEE-CCeeCCHHHHHHHHHHHHhhccccCCCCCccccccCCcHHHHHHHHHHHhcCchHHHHHHHHHhCeEEEEecc
Confidence 478998 99999999999999999984 4333569999999999999999999998 9999999999999999999999
Q ss_pred CCCC
Q psy7502 78 VPLS 81 (87)
Q Consensus 78 ~~~p 81 (87)
..|
T Consensus 281 -~~p 283 (612)
T 1xl7_A 281 -SSP 283 (612)
T ss_dssp -CCC
T ss_pred -CCC
Confidence 877
No 4
>1t1u_A Choline O-acetyltransferase; choline acetyltransferase; 1.55A {Rattus norvegicus} SCOP: c.43.1.3 c.43.1.3 PDB: 1q6x_A 2fy2_A 2fy3_A 2fy4_A* 2fy5_A*
Probab=99.89 E-value=2.3e-23 Score=159.29 Aligned_cols=79 Identities=34% Similarity=0.601 Sum_probs=72.1
Q ss_pred CcceecCCCcccCHHHHHHHHHHHHhhCCCCCC---CcccccccchHHHHHHHHHHhcChhHHHHHHHHHhhceeEeccC
Q psy7502 1 MRLTYGENATRYTEEELTSQFMKILESQPSQVN---PVGILTTQRRDMWAESWDILQKDEQNRANLDLIEKSLITICLDS 77 (87)
Q Consensus 1 ~~~v~~~~g~~ls~~~i~~~l~~I~~~~~~~~~---~vg~LT~~~Rd~Wa~~r~~L~~~~~N~~~L~~Ie~alf~l~LD~ 77 (87)
+|+|+ .+|+++++.+|+.||++|++++...+. +||+||+++|+.||++|++|++++.|+++|+.||+|+|+||||+
T Consensus 205 ~v~v~-~~g~~ls~~el~~qL~~I~~~~~~~~~~~~~vg~LTt~~R~~WA~~R~~L~~~~~N~~sL~~IesAlFvvcLDd 283 (639)
T 1t1u_A 205 VLDVV-INFRRLSEGDLFTQLRKIVKMASNEDERLPPIGLLTSDGRSEWAKARTVLLKDSTNRDSLDMIERCICLVCLDG 283 (639)
T ss_dssp EEESE-ETTEECCHHHHHHHHHHHHHHHTCSTTCCCCGGGGGGSCHHHHHHHHHHHTTSHHHHHHHHHHHTCSCEEEECC
T ss_pred EEEEe-eCCeeCCHHHHHHHHHHHHhcCCccccccCCccccccCCchHHHHHHHHHhhCchHHHHHHHHHhcEEEEEecC
Confidence 46888 789999999999999999987654433 99999999999999999999999999999999999999999999
Q ss_pred CCCC
Q psy7502 78 VPLS 81 (87)
Q Consensus 78 ~~~p 81 (87)
..|
T Consensus 284 -~~p 286 (639)
T 1t1u_A 284 -PGT 286 (639)
T ss_dssp -CCS
T ss_pred -CCC
Confidence 776
No 5
>1f46_A Cell division protein ZIPA; transmembrane, inner membrane, cell cycle; 1.50A {Escherichia coli} SCOP: d.129.4.1 PDB: 1f47_B 1s1j_A* 1s1s_A* 1y2g_A* 1f7w_A 1f7x_A 1y2f_A*
Probab=54.17 E-value=13 Score=22.90 Aligned_cols=24 Identities=17% Similarity=0.106 Sum_probs=18.5
Q ss_pred ceecCCCcccCHHHHHHHHHHHHh
Q psy7502 3 LTYGENATRYTEEELTSQFMKILE 26 (87)
Q Consensus 3 ~v~~~~g~~ls~~~i~~~l~~I~~ 26 (87)
.|+|.+++++|+..++..-++|.+
T Consensus 111 ~llDd~r~~lt~~~~~~ir~~l~~ 134 (140)
T 1f46_A 111 VVLDDQRRMMTPQKLREYQDIIRE 134 (140)
T ss_dssp EEECTTSCBCCHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCHHHHHHHHHHHHH
Confidence 478999999999887766666543
No 6
>2a6q_A Antitoxin YEFM; YEFM, antitoxin, addiction modules, RNAse, inhibitor, toxin inhibitor/toxin complex; 2.05A {Escherichia coli} SCOP: d.306.1.1
Probab=46.40 E-value=35 Score=18.68 Aligned_cols=52 Identities=10% Similarity=0.059 Sum_probs=32.3
Q ss_pred ccCHHHHHHHHHHHHhhCC---CC------CCCcccccccchHHHHHHH--HHHhcChhHHHHHH
Q psy7502 11 RYTEEELTSQFMKILESQP---SQ------VNPVGILTTQRRDMWAESW--DILQKDEQNRANLD 64 (87)
Q Consensus 11 ~ls~~~i~~~l~~I~~~~~---~~------~~~vg~LT~~~Rd~Wa~~r--~~L~~~~~N~~~L~ 64 (87)
.++..++..+|..+++... .+ +.+..+|-+. +.|.... .+|+++|.|.+.|.
T Consensus 6 ~v~~~e~r~~l~~~~~~v~~~~epviItr~g~~~avlvs~--e~y~~l~e~l~ll~~p~~~~~L~ 68 (86)
T 2a6q_A 6 TISYSEARQNLSATMMKAVEDHAPILITRQNGEACVLMSL--EEYNSLEETAYLLRSPANARRLM 68 (86)
T ss_dssp EEEHHHHHHTHHHHHHHHHHHTCCEEEECTTSCEEEEEEH--HHHHHHHHHHHHHHSHHHHHHHH
T ss_pred EECHHHHHHHHHHHHHHHHhcCCcEEEEeCCCccEEEEcH--HHHHHHHHHHHHhcCHHHHHHHH
Confidence 5778888888888887541 22 3466666554 3444333 34566787877654
No 7
>2yh5_A DAPX protein, BAMC; lipid binding protein, lipoprotein, BAM complex; 1.25A {Escherichia coli} PDB: 3sns_A
Probab=46.16 E-value=21 Score=21.66 Aligned_cols=23 Identities=4% Similarity=-0.070 Sum_probs=17.3
Q ss_pred cceecCCCcccCHHHHHHHHHHH
Q psy7502 2 RLTYGENATRYTEEELTSQFMKI 24 (87)
Q Consensus 2 ~~v~~~~g~~ls~~~i~~~l~~I 24 (87)
|.|+|++|++++.++..+.+..+
T Consensus 91 V~v~d~~G~p~~~~~a~~ll~~L 113 (127)
T 2yh5_A 91 LQFIDPKGHTLTQSQNDALVAVF 113 (127)
T ss_dssp EEEECTTSCBCCHHHHHHHHHHH
T ss_pred EEEECCCCCCCCHHHHHHHHHHH
Confidence 56899999999998765555444
No 8
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=42.08 E-value=19 Score=21.53 Aligned_cols=18 Identities=11% Similarity=0.327 Sum_probs=16.3
Q ss_pred ccCHHHHHHHHHHHHhhC
Q psy7502 11 RYTEEELTSQFMKILESQ 28 (87)
Q Consensus 11 ~ls~~~i~~~l~~I~~~~ 28 (87)
.||.++|.+|+++++.+.
T Consensus 19 ~lt~eqI~kQI~Yll~qG 36 (109)
T 1rbl_M 19 PLSDRQIAAQIEYMIEQG 36 (109)
T ss_dssp CCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHCC
Confidence 589999999999999875
No 9
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=39.58 E-value=22 Score=21.27 Aligned_cols=18 Identities=11% Similarity=0.159 Sum_probs=16.2
Q ss_pred ccCHHHHHHHHHHHHhhC
Q psy7502 11 RYTEEELTSQFMKILESQ 28 (87)
Q Consensus 11 ~ls~~~i~~~l~~I~~~~ 28 (87)
.||.++|.+|+++++...
T Consensus 21 ~lt~eqI~kQV~Yll~qG 38 (110)
T 1svd_M 21 PMNAERIRAQIKYAIAQG 38 (110)
T ss_dssp CCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHCC
Confidence 589999999999999975
No 10
>3zxw_B Ribulose bisphosphate carboxylase small chain; CO2/O2 specificity, carbon dioxide fixation, photosynthesis, thermostability; HET: KCX CAP; 2.10A {Thermosynechococcus elongatus} PDB: 2ybv_B*
Probab=38.97 E-value=23 Score=21.53 Aligned_cols=18 Identities=6% Similarity=0.237 Sum_probs=16.2
Q ss_pred ccCHHHHHHHHHHHHhhC
Q psy7502 11 RYTEEELTSQFMKILESQ 28 (87)
Q Consensus 11 ~ls~~~i~~~l~~I~~~~ 28 (87)
.||.++|.+|+++++...
T Consensus 18 ~Lt~eqI~kQV~yll~qG 35 (118)
T 3zxw_B 18 PLSDAQIARQIQYAIDQG 35 (118)
T ss_dssp CCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhCC
Confidence 589999999999999874
No 11
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}
Probab=38.29 E-value=32 Score=20.88 Aligned_cols=27 Identities=22% Similarity=0.366 Sum_probs=18.6
Q ss_pred cCHHHHHHHHHHHHhhCCCC---CCCcccc
Q psy7502 12 YTEEELTSQFMKILESQPSQ---VNPVGIL 38 (87)
Q Consensus 12 ls~~~i~~~l~~I~~~~~~~---~~~vg~L 38 (87)
.+.++|...|+.++...... .+++|+.
T Consensus 160 ~~~~~l~~~i~~ll~~~~~~~~~~~~~gC~ 189 (196)
T 2ywi_A 160 VTGESIRAALDALLEGRPVPEKQKPSIGCS 189 (196)
T ss_dssp CCCHHHHHHHHHHHHTCCCCSCCCCCEEEE
T ss_pred cCHHHHHHHHHHHHcCCCCCCCCCCCCcee
Confidence 37789999999998754332 2366654
No 12
>4fak_A Ribosomal RNA large subunit methyltransferase H; alpha/beta methyltransferase rossmann fold, rRNA methylation rRNA, ribosomal protein; HET: SAM PG4; 1.70A {Staphylococcus aureus} PDB: 1vh0_A
Probab=36.60 E-value=19 Score=22.90 Aligned_cols=26 Identities=12% Similarity=0.133 Sum_probs=21.4
Q ss_pred eecCCCcccCHHHHHHHHHHHHhhCC
Q psy7502 4 TYGENATRYTEEELTSQFMKILESQP 29 (87)
Q Consensus 4 v~~~~g~~ls~~~i~~~l~~I~~~~~ 29 (87)
++|..|+.+|..++...|+.......
T Consensus 79 ~LD~~Gk~~sS~~fA~~l~~~~~~g~ 104 (163)
T 4fak_A 79 TLEIQGKMLSSEGLAQELNQRMTQGQ 104 (163)
T ss_dssp EEEEEEEECCHHHHHHHHHHHHHTTC
T ss_pred EEcCCCCcCCHHHHHHHHHHHHhcCC
Confidence 57888999999999999988877653
No 13
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3
Probab=34.67 E-value=23 Score=22.64 Aligned_cols=26 Identities=19% Similarity=0.178 Sum_probs=22.1
Q ss_pred ceecCCCcccCHHHHHHHHHHHHhhC
Q psy7502 3 LTYGENATRYTEEELTSQFMKILESQ 28 (87)
Q Consensus 3 ~v~~~~g~~ls~~~i~~~l~~I~~~~ 28 (87)
=++|..|+.+|..++...|+......
T Consensus 74 I~LD~~Gk~~sS~~fA~~l~~~~~~G 99 (167)
T 1to0_A 74 IALAIEGKMKTSEELADTIDKLATYG 99 (167)
T ss_dssp EEEEEEEEECCHHHHHHHHHHHHTTT
T ss_pred EEEcCCCCcCCHHHHHHHHHHHHhcC
Confidence 35888999999999999999887654
No 14
>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3
Probab=33.92 E-value=29 Score=22.07 Aligned_cols=26 Identities=8% Similarity=0.150 Sum_probs=22.7
Q ss_pred ceecCCCcccCHHHHHHHHHHHHhhC
Q psy7502 3 LTYGENATRYTEEELTSQFMKILESQ 28 (87)
Q Consensus 3 ~v~~~~g~~ls~~~i~~~l~~I~~~~ 28 (87)
=++|..|+.+|..++...|+......
T Consensus 69 I~LD~~Gk~~sS~~fA~~l~~~~~~G 94 (163)
T 1o6d_A 69 MVMDKRGEEVSSEEFADFLKDLEMKG 94 (163)
T ss_dssp EEEEEEEEECCHHHHHHHHHHHHHHT
T ss_pred EEEcCCCCcCCHHHHHHHHHHHHhcC
Confidence 35889999999999999999987765
No 15
>1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} SCOP: c.116.1.3
Probab=33.18 E-value=28 Score=21.89 Aligned_cols=26 Identities=8% Similarity=0.112 Sum_probs=22.3
Q ss_pred ceecCCCcccCHHHHHHHHHHHHhhC
Q psy7502 3 LTYGENATRYTEEELTSQFMKILESQ 28 (87)
Q Consensus 3 ~v~~~~g~~ls~~~i~~~l~~I~~~~ 28 (87)
-++|..|+.+|..++...|+......
T Consensus 70 i~Ld~~Gk~~sS~~fA~~l~~~~~~g 95 (155)
T 1ns5_A 70 VTLDIPGKPWDTPQLAAELERWKLDG 95 (155)
T ss_dssp EEEEEEEECCCHHHHHHHHHHHHHHC
T ss_pred EEEcCCCCcCCHHHHHHHHHHHHhcC
Confidence 35888999999999999999887765
No 16
>1wdd_S Ribulose bisphosphate carboxylase small chain C; rubisco, photosynthesis, alpha/beta barrel, N-methylmethioni translational modification, lyase; HET: KCX CAP; 1.35A {Oryza sativa} SCOP: d.73.1.1 PDB: 3axm_S* 3axk_S* 8ruc_I* 1aus_S 1rbo_S* 1rco_S* 1rcx_S* 1rxo_S* 1upm_C* 1upp_I* 1aa1_S* 3rub_S 1rlc_S* 1rld_S 1ej7_S 1ir1_S* 4rub_S*
Probab=32.07 E-value=34 Score=21.06 Aligned_cols=18 Identities=33% Similarity=0.359 Sum_probs=16.1
Q ss_pred ccCHHHHHHHHHHHHhhC
Q psy7502 11 RYTEEELTSQFMKILESQ 28 (87)
Q Consensus 11 ~ls~~~i~~~l~~I~~~~ 28 (87)
.||.++|.+|+++++...
T Consensus 20 ~lt~eqI~kQI~Yll~qG 37 (128)
T 1wdd_S 20 PLTVEDLLKQIEYLLRSK 37 (128)
T ss_dssp CCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHCC
Confidence 589999999999999864
No 17
>1bxn_I Rubisco, protein (ribulose bisphosphate carboxylase small; lyase (carbon-carbon), lyase; 2.70A {Cupriavidus necator} SCOP: d.73.1.1
Probab=31.84 E-value=34 Score=21.37 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=16.3
Q ss_pred ccCHHHHHHHHHHHHhhC
Q psy7502 11 RYTEEELTSQFMKILESQ 28 (87)
Q Consensus 11 ~ls~~~i~~~l~~I~~~~ 28 (87)
.||.++|.+|+++++.+.
T Consensus 13 ~ltdeqI~kQI~YlL~qG 30 (139)
T 1bxn_I 13 ELTDEQITKQLEYCLNQG 30 (139)
T ss_dssp CCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHCC
Confidence 589999999999999875
No 18
>1bwv_S Rubisco, protein (ribulose bisphosphate carboxylase); carbon dioxide fixation, complex (rubisco-reaction intermedi high specificity factor; HET: KCX CAP; 2.40A {Galdieria partita} SCOP: d.73.1.1 PDB: 1iwa_B
Probab=31.73 E-value=34 Score=21.31 Aligned_cols=18 Identities=17% Similarity=0.351 Sum_probs=16.2
Q ss_pred ccCHHHHHHHHHHHHhhC
Q psy7502 11 RYTEEELTSQFMKILESQ 28 (87)
Q Consensus 11 ~ls~~~i~~~l~~I~~~~ 28 (87)
.||.++|.+|+++++.+.
T Consensus 13 ~ltdeqI~kQI~Yll~qG 30 (138)
T 1bwv_S 13 DLTDEQIKKQIDYMISKK 30 (138)
T ss_dssp CCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHCC
Confidence 589999999999999874
No 19
>1gk8_I Ribulose bisphosphate carboxylase small chain 1; lyase, rubisco, photosynthesis; HET: KCX CAP; 1.4A {Chlamydomonas reinhardtii} SCOP: d.73.1.1 PDB: 2v63_I* 2v67_I* 2v68_I* 2v69_I* 2v6a_I* 2vdh_I* 2vdi_I* 1uw9_C* 1uwa_C* 1ir2_I* 1uzd_C* 1uzh_C*
Probab=31.66 E-value=34 Score=21.37 Aligned_cols=18 Identities=22% Similarity=0.326 Sum_probs=16.0
Q ss_pred ccCHHHHHHHHHHHHhhC
Q psy7502 11 RYTEEELTSQFMKILESQ 28 (87)
Q Consensus 11 ~ls~~~i~~~l~~I~~~~ 28 (87)
.||.++|.+|+++++.+.
T Consensus 20 ~lt~eqI~kQI~YlL~qG 37 (140)
T 1gk8_I 20 PLTDEQIAAQVDYIVANG 37 (140)
T ss_dssp CCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHCC
Confidence 589999999999999864
No 20
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=30.91 E-value=43 Score=21.45 Aligned_cols=13 Identities=23% Similarity=0.117 Sum_probs=10.0
Q ss_pred ccCHHHHHHHHHH
Q psy7502 11 RYTEEELTSQFMK 23 (87)
Q Consensus 11 ~ls~~~i~~~l~~ 23 (87)
=+||+|++..|+.
T Consensus 28 GfspEEV~aAl~~ 40 (162)
T 4dbg_B 28 GACPEEIFSALQY 40 (162)
T ss_dssp CCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHh
Confidence 3889999988843
No 21
>3ro2_B Peptide of nuclear mitotic apparatus protein 1; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Homo sapiens}
Probab=30.71 E-value=25 Score=15.73 Aligned_cols=16 Identities=6% Similarity=0.094 Sum_probs=9.2
Q ss_pred eeEeccCCCCCCCCCCC
Q psy7502 71 ITICLDSVPLSPSFIGW 87 (87)
Q Consensus 71 f~l~LD~~~~p~~~~~~ 87 (87)
|.+.... ..|+.+++|
T Consensus 4 ~ymgtcq-depeqlddw 19 (28)
T 3ro2_B 4 FYMGTCQ-DEPEQLDDW 19 (28)
T ss_dssp CCCCSCC-CCCCCCCCT
T ss_pred eeecccc-CCcccchhH
Confidence 3343333 448778887
No 22
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=30.54 E-value=72 Score=17.61 Aligned_cols=47 Identities=19% Similarity=0.237 Sum_probs=32.3
Q ss_pred CCcccCHHHHHHHHHHHHhhCCCCC----CCccccc-----ccchHHHHHHHHHHh
Q psy7502 8 NATRYTEEELTSQFMKILESQPSQV----NPVGILT-----TQRRDMWAESWDILQ 54 (87)
Q Consensus 8 ~g~~ls~~~i~~~l~~I~~~~~~~~----~~vg~LT-----~~~Rd~Wa~~r~~L~ 54 (87)
+|.-.|...|...++.+++...... ..|.-+= ...|.+.|+.|+.|-
T Consensus 12 ~g~~~S~~~Ik~~Ik~lI~~Ed~~kPlSD~~I~~~L~~~Gi~IaRRTVaKYRe~l~ 67 (76)
T 2ahq_A 12 SAEGLTQGELMKLIKEIVENEDKRKPYSDQEIANILKEKGFKVARRTVAKYREMLG 67 (76)
T ss_dssp SCCSCCHHHHHHHHHHHGGGCCSSSCCCHHHHHHHHTTTSSCCCHHHHHHHHHHTC
T ss_pred CCccccHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHcC
Confidence 4566899999999999998764321 1121111 336899999999984
No 23
>4f0h_B Ribulose bisphosphate carboxylase small chain; alpha beta domain, catalytic domain TIM barrel, carboxylase/oxygenase, nitrosylation; 1.96A {Galdieria sulphuraria} PDB: 4f0k_B 4f0m_B 1iwa_B 1bwv_S*
Probab=30.52 E-value=37 Score=21.17 Aligned_cols=18 Identities=17% Similarity=0.351 Sum_probs=16.3
Q ss_pred ccCHHHHHHHHHHHHhhC
Q psy7502 11 RYTEEELTSQFMKILESQ 28 (87)
Q Consensus 11 ~ls~~~i~~~l~~I~~~~ 28 (87)
.||.++|.+|+++++.+.
T Consensus 13 ~ltd~qI~kQI~YlL~qG 30 (138)
T 4f0h_B 13 DLTDEQIKKQIDYMISKK 30 (138)
T ss_dssp CCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHhCC
Confidence 589999999999999874
No 24
>2yka_B ORF57 protein, 52 kDa immediate-early phosphoprotein; RNA binding protein-transcription complex, RNA binding prote; NMR {Saimiriine herpesvirus 2}
Probab=34.14 E-value=12 Score=16.48 Aligned_cols=16 Identities=25% Similarity=0.518 Sum_probs=10.4
Q ss_pred ccccccchHHHH-HHHH
Q psy7502 36 GILTTQRRDMWA-ESWD 51 (87)
Q Consensus 36 g~LT~~~Rd~Wa-~~r~ 51 (87)
|.|-+..|.+|+ ..|+
T Consensus 1 gplgsscr~nWs~RV~E 17 (26)
T 2yka_B 1 GPLGSSCKTSWADRVRE 17 (26)
Confidence 345677888998 4443
No 25
>2fqm_A Phosphoprotein, P protein; negative strand RNA virus, polymerase, replication, cofactor, viral protein; 2.30A {Vesicular stomatitis indiana virus} SCOP: d.378.1.1
Probab=27.67 E-value=26 Score=19.41 Aligned_cols=23 Identities=17% Similarity=0.458 Sum_probs=19.3
Q ss_pred CCcccccccchHHHHHHHHHHhcC
Q psy7502 33 NPVGILTTQRRDMWAESWDILQKD 56 (87)
Q Consensus 33 ~~vg~LT~~~Rd~Wa~~r~~L~~~ 56 (87)
+|+| ||...+.+|.+.-+.++++
T Consensus 24 ~P~g-Lt~~Q~~QW~~TIeav~qS 46 (75)
T 2fqm_A 24 LPEG-LSGEQKSQWMLTIKAVVQS 46 (75)
T ss_dssp CCSS-CCHHHHHHHHHHHHHHHHH
T ss_pred CCCC-ccHHHHHHHHHHHHHHHhh
Confidence 4677 8999999999988888764
No 26
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=27.33 E-value=90 Score=17.70 Aligned_cols=27 Identities=7% Similarity=0.009 Sum_probs=19.4
Q ss_pred eecCCCcc-------cCHHHHHHHHHHHHhhCCC
Q psy7502 4 TYGENATR-------YTEEELTSQFMKILESQPS 30 (87)
Q Consensus 4 v~~~~g~~-------ls~~~i~~~l~~I~~~~~~ 30 (87)
++|.+|++ .+.++|...|+.++.....
T Consensus 112 lid~~G~i~~~~~g~~~~~~l~~~l~~ll~~~~~ 145 (153)
T 2l5o_A 112 LIGKKGEILKTYVGEPDFGKLYQEIDTAWRNSDA 145 (153)
T ss_dssp EECSSSCCCEEEESSCCHHHHHHHHHHHHHCCSS
T ss_pred EECCCCcEEEEEcCCCCHHHHHHHHHHHHHhhhh
Confidence 46677764 4778888888888876544
No 27
>1vaz_A NSFL1 cofactor P47; beta-BETA-beta-alpha-alpha-beta, novel fold, lipid binding protein; NMR {Rattus norvegicus} SCOP: d.245.1.1
Probab=27.21 E-value=35 Score=19.61 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=17.2
Q ss_pred ChhHHHHHHHHHhhceeEecc
Q psy7502 56 DEQNRANLDLIEKSLITICLD 76 (87)
Q Consensus 56 ~~~N~~~L~~Ie~alf~l~LD 76 (87)
+|.|++-|+.|.++.|=.-|-
T Consensus 45 DP~N~~FL~~I~~G~~P~EL~ 65 (88)
T 1vaz_A 45 DPSNAQFLESIRRGEVPAELR 65 (88)
T ss_dssp SSTHHHHHHHHHHTCCSSHHH
T ss_pred CHhHHHHHHHHHcCCCCHHHH
Confidence 789999999999887755554
No 28
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}
Probab=26.74 E-value=63 Score=20.35 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=17.4
Q ss_pred CHHHHHHHHHHHHhhCCCC---CCCcccc
Q psy7502 13 TEEELTSQFMKILESQPSQ---VNPVGIL 38 (87)
Q Consensus 13 s~~~i~~~l~~I~~~~~~~---~~~vg~L 38 (87)
+..+|...|+.++...... .+++|+.
T Consensus 174 ~~~~l~~~i~~ll~~~~~~~~~~~~~GC~ 202 (218)
T 3u5r_E 174 TGADLRAAVDAVLKGKDVGTTQVPSIGCN 202 (218)
T ss_dssp CCHHHHHHHHHHHTTCCCCSCCCCCEEEE
T ss_pred CHHHHHHHHHHHHcCCCCCcCCcCCCCee
Confidence 5789999999998754332 2355543
No 29
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}
Probab=26.55 E-value=52 Score=18.98 Aligned_cols=27 Identities=7% Similarity=0.107 Sum_probs=20.5
Q ss_pred eecCCCcc----cCHHHHHHHHHHHHhhCCC
Q psy7502 4 TYGENATR----YTEEELTSQFMKILESQPS 30 (87)
Q Consensus 4 v~~~~g~~----ls~~~i~~~l~~I~~~~~~ 30 (87)
++|.+|++ ++.++|...|+.++....+
T Consensus 115 lid~~G~i~~~~~~~~~l~~~l~~l~~~~~~ 145 (152)
T 2lrn_A 115 LVDPEGKIVAKELRGDDLYNTVEKFVNGAKE 145 (152)
T ss_dssp EECTTSEEEEECCCTTHHHHHHHHHHTSSSS
T ss_pred EECCCCeEEEeeCCHHHHHHHHHHHHhhccc
Confidence 56778863 5778899999998886544
No 30
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=24.83 E-value=33 Score=20.61 Aligned_cols=25 Identities=8% Similarity=0.073 Sum_probs=16.8
Q ss_pred ceecCCCc---ccCHHHHHHHHHHHHhh
Q psy7502 3 LTYGENAT---RYTEEELTSQFMKILES 27 (87)
Q Consensus 3 ~v~~~~g~---~ls~~~i~~~l~~I~~~ 27 (87)
.|+|++|+ ++|..+|.+.+.+++.+
T Consensus 119 pVVd~~g~l~GiiT~~Dil~~~~~~~~~ 146 (156)
T 3k6e_A 119 PVVDAEGIFQGIITRKSILKAVNALLHD 146 (156)
T ss_dssp EEECTTSBEEEEEEHHHHHHHHHHHSCC
T ss_pred EEEecCCEEEEEEEHHHHHHHHHHHhcc
Confidence 46677775 57777777777666543
No 31
>3mb2_B 4-oxalocrotonate tautomerase family enzyme - beta; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=23.23 E-value=1e+02 Score=16.99 Aligned_cols=42 Identities=12% Similarity=0.286 Sum_probs=26.6
Q ss_pred CcceecCCCcccCHHH-------HHHHHHHHHhhCCCC----------CCCcccccccc
Q psy7502 1 MRLTYGENATRYTEEE-------LTSQFMKILESQPSQ----------VNPVGILTTQR 42 (87)
Q Consensus 1 ~~~v~~~~g~~ls~~~-------i~~~l~~I~~~~~~~----------~~~vg~LT~~~ 42 (87)
|.+|+.+..++.|.++ +...|.+|+...... ...+|+|+-+.
T Consensus 2 ~lev~~~~~~pRT~EQKralaeE~T~if~evLGcpPgsV~IVi~EV~~en~l~~~~~~~ 60 (72)
T 3mb2_B 2 MLEVFYSGDRPPDRTRKQAFAAEASAIFQRVIGTPPGRLQLIIQIVSPENTLAVIDLDR 60 (72)
T ss_dssp EEEEEECCSSCCCHHHHHHHHHHHHHHHHHHHCCCTTCCEEEEEECCGGGSGGGGGCC-
T ss_pred ceEEEecCCCCCCHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCcccceeeeeccC
Confidence 4678888778888865 555666666654432 13688886654
No 32
>3g5o_A Uncharacterized protein RV2865; heterotetramer, 1:1 ratio, structural genomics, PSI-2, prote structure initiative; 2.00A {Mycobacterium tuberculosis}
Probab=22.74 E-value=61 Score=18.82 Aligned_cols=52 Identities=13% Similarity=0.245 Sum_probs=31.4
Q ss_pred ccCHHHHHHHHHHHHhhCCC---C------CCCcccccccchHHHHHHHH--HHhcChhHHHHHH
Q psy7502 11 RYTEEELTSQFMKILESQPS---Q------VNPVGILTTQRRDMWAESWD--ILQKDEQNRANLD 64 (87)
Q Consensus 11 ~ls~~~i~~~l~~I~~~~~~---~------~~~vg~LT~~~Rd~Wa~~r~--~L~~~~~N~~~L~ 64 (87)
.++..++...|..+++.+.. + +.+..+|-+. +.|....+ +|+++|.|.+.|.
T Consensus 10 ~is~sear~~l~~ll~~v~~~~epViITr~G~~~aVl~s~--e~ye~l~etl~LL~~~~~~~~L~ 72 (108)
T 3g5o_A 10 ILPISTIKGKLNEFVDAVSSTQDQITITKNGAPAAVLVGA--DEWESLQETLYWLAQPGIRESIA 72 (108)
T ss_dssp EEEHHHHTTCHHHHHHHHHTSSCEEEEEETTEEEEEEEEH--HHHHHHHHHHHHHTSTTHHHHHH
T ss_pred eeeHHHHHHHHHHHHHHHHhhCCcEEEEECCCCcEEEecH--HHHHHHHHHHHHhcChHHHHHHH
Confidence 46788888888888876521 1 2344444443 34444444 4566788877764
No 33
>2rod_B NOXA, noxaa; MCL-1, apoptosis, BH3-only, BCL-2, cytoplasm, developmental protein, differentiation, membrane, mitochondrion, nucleus, phosphoprotein; NMR {Mus musculus}
Probab=21.02 E-value=38 Score=14.83 Aligned_cols=14 Identities=29% Similarity=0.356 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHhh
Q psy7502 14 EEELTSQFMKILES 27 (87)
Q Consensus 14 ~~~i~~~l~~I~~~ 27 (87)
|.++..||++|-+.
T Consensus 4 ppefaaqlrkigdk 17 (27)
T 2rod_B 4 PPEFAAQLRKIGDK 17 (27)
T ss_dssp CTHHHHHHHHHHHH
T ss_pred ChHHHHHHHHhCCe
Confidence 35778888888653
No 34
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=20.00 E-value=34 Score=14.52 Aligned_cols=10 Identities=10% Similarity=0.215 Sum_probs=6.4
Q ss_pred eecCCCcccC
Q psy7502 4 TYGENATRYT 13 (87)
Q Consensus 4 v~~~~g~~ls 13 (87)
++|.+|+.+.
T Consensus 9 IYD~~g~~i~ 18 (26)
T 2v2f_A 9 IYDNKNQLIA 18 (26)
T ss_pred EEeCCCCEee
Confidence 5777776544
Done!