RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7502
(87 letters)
>gnl|CDD|216101 pfam00755, Carn_acyltransf, Choline/Carnitine o-acyltransferase.
Length = 590
Score = 75.0 bits (185), Expect = 2e-17
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 4 TYGENATRYTEEELTSQFMKILE-SQPSQVN--PVGILTTQRRDMWAESWDILQKDEQNR 60
N T +E+ Q +IL S SQ P+G LT++ RD WA++ L KD +N+
Sbjct: 181 VLDSNGKLLTPDEIERQLAEILSDSSKSQPVEAPIGALTSEPRDEWAKARQKLFKDNKNK 240
Query: 61 ANLDLIEKSLITICLD 76
+L+ IE +L +CLD
Sbjct: 241 ESLEKIESALFVVCLD 256
>gnl|CDD|131764 TIGR02717, AcCoA-syn-alpha, acetyl coenzyme A synthetase (ADP
forming), alpha domain. Although technically
reversible, it is believed that this group of
ADP-dependent acetyl-CoA synthetases (ACS) act in the
direction of acetate and ATP production in the organisms
in which it has been characterized. In most species this
protein exists as a fused alpha-beta domain polypeptide.
In Pyrococcus and related species, however the domains
exist as separate polypeptides. This model represents
the alpha (N-terminal) domain. In Pyrococcus and related
species there appears to have been the development of a
paralogous family such that four other proteins are
close relatives. In reference , one of these (along with
its beta-domain partner) was characterized as ACS-II
showing specificity for phenylacetyl-CoA. This model has
been constructed to exclude these non-ACS-I paralogs.
This may result in new, authentic ACS-I sequences
falling below the trusted cutoff.
Length = 447
Score = 28.0 bits (63), Expect = 0.55
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 14 EEELTSQFMKILESQPSQVNPVGILTTQRRDMWAESWDILQKDEQ 58
E ++ IL + S NPV +L + +A++ + +DE
Sbjct: 326 SEATKNKLRNILPPEASIKNPVDVLGDATPERYAKALKTVAEDEN 370
>gnl|CDD|173662 cd05571, STKc_PKB, Catalytic domain of the Protein Serine/Threonine
Kinase, Protein Kinase B. Serine/Threonine Kinases
(STKs), Protein Kinase B (PKB) or Akt subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase (PI3K). There are
three PKB isoforms from different genes, PKB-alpha (or
Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
contains an N-terminal pleckstrin homology (PH) domain
and a C-terminal catalytic domain. It is activated
downstream of PI3K and plays important roles in diverse
cellular functions including cell survival, growth,
proliferation, angiogenesis, motility, and migration.
PKB also has a central role in a variety of human
cancers, having been implicated in tumor initiation,
progression, and metastasis.
Length = 323
Score = 26.3 bits (58), Expect = 2.4
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 7 ENATRYTEEELTSQFMKILESQPSQVNPVGILTTQRR 43
E TRY +EE T+Q + I + P + + +G+L + R
Sbjct: 278 ETDTRYFDEEFTAQSITI--TPPDRYDSLGLLQLEER 312
>gnl|CDD|235344 PRK05097, PRK05097, Ter macrodomain organizer matS-binding
protein; Provisional.
Length = 150
Score = 25.7 bits (57), Expect = 3.0
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Query: 6 GENATRYTE----EELTSQFMKILESQPSQVN 33
GE TRY E +E + +K LE++P +V
Sbjct: 25 GELITRYIEASAAQEAVDELLK-LENEPVKVL 55
>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein;
Provisional.
Length = 2102
Score = 25.8 bits (57), Expect = 3.7
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 53 LQKDEQNRANLDLIEKSLITICLDSVPLSPSFI 85
L KD LD+++ +I LD +P +P +
Sbjct: 1427 LGKDRPPC-KLDMVKAGIIERVLDILPEAPDSL 1458
>gnl|CDD|234749 PRK00405, rpoB, DNA-directed RNA polymerase subunit beta; Reviewed.
Length = 1112
Score = 25.1 bits (56), Expect = 5.8
Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 7/25 (28%)
Query: 19 SQFMKILESQPSQVNPVGILTTQRR 43
SQFM Q NP+ LT +RR
Sbjct: 433 SQFM-------DQTNPLSELTHKRR 450
>gnl|CDD|200554 cd10928, CE4_u4, Putative catalytic domain of uncharacterized
bacterial proteins from the carbohydrate esterase 4
superfamily. This family corresponds to a group of
uncharacterized bacterial proteins with high sequence
similarity to the catalytic domain of the six-stranded
barrel rhizobial NodB-like proteins, which remove
N-linked or O-linked acetyl groups from cell wall
polysaccharides and belong to the larger carbohydrate
esterase 4 (CE4) superfamily.
Length = 222
Score = 24.6 bits (54), Expect = 6.9
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 15 EELTSQFMKILESQPSQVNPVGILTTQRRDMWAESWDILQ 54
E L S + L S+ PVGIL T +W+ L
Sbjct: 166 EILLSALARRLASRRRWDEPVGIL-THHLVHDEAAWEFLD 204
>gnl|CDD|233685 TIGR02013, rpoB, DNA-directed RNA polymerase, beta subunit. This
model describes orthologs of the beta subunit of
Bacterial RNA polymerase. The core enzyme consists of
two alpha chains, one beta chain, and one beta' subunit
[Transcription, DNA-dependent RNA polymerase].
Length = 1065
Score = 25.0 bits (55), Expect = 7.1
Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 7/25 (28%)
Query: 19 SQFMKILESQPSQVNPVGILTTQRR 43
SQFM Q NP+ LT +RR
Sbjct: 388 SQFM-------DQTNPLAELTHKRR 405
>gnl|CDD|237791 PRK14701, PRK14701, reverse gyrase; Provisional.
Length = 1638
Score = 24.9 bits (54), Expect = 7.9
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 17 LTSQFMKILESQPSQVNPVGILTTQRRDMWAESWDIL 53
LTS+ +LE + +GIL T RD W ++
Sbjct: 1200 LTSKRRDVLEKLGVYLYSIGILNTLHRDERNGVWTLI 1236
>gnl|CDD|165212 PHA02884, PHA02884, ankyrin repeat protein; Provisional.
Length = 300
Score = 24.6 bits (53), Expect = 8.5
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 3 LTYGENATRYTEE-ELTSQFMKILESQPSQVN 33
+ YG + RY EE ++T ++ +L +
Sbjct: 90 IRYGADVNRYAEEAKITPLYISVLHGCLKCLE 121
>gnl|CDD|215913 pfam00425, Chorismate_bind, chorismate binding enzyme. This family
includes the catalytic regions of the chorismate binding
enzymes anthranilate synthase, isochorismate synthase,
aminodeoxychorismate synthase and para-aminobenzoate
synthase.
Length = 254
Score = 24.4 bits (54), Expect = 9.7
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Query: 53 LQKDEQNRA-NL---DLIEKSLITICLDSVPLSPSF 84
L E+ RA +L DLI L +C SV +
Sbjct: 105 LLASEKERAEHLMVVDLIRNDLGRVCKGSVKVPELP 140
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.131 0.388
Gapped
Lambda K H
0.267 0.0722 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,218,467
Number of extensions: 315370
Number of successful extensions: 248
Number of sequences better than 10.0: 1
Number of HSP's gapped: 247
Number of HSP's successfully gapped: 16
Length of query: 87
Length of database: 10,937,602
Length adjustment: 55
Effective length of query: 32
Effective length of database: 8,498,132
Effective search space: 271940224
Effective search space used: 271940224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.2 bits)