RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7502
(87 letters)
>1nm8_A Carnitine O-acetyltransferase; two equally sized domains,
anti-parallel beta-strand; 1.60A {Homo sapiens} SCOP:
c.43.1.3 c.43.1.3 PDB: 1s5o_A* 2h3u_A* 2h3p_A* 1t7q_A*
1t7n_A 1t7o_A* 1ndb_A 1ndf_A* 1ndi_A* 2h3w_A*
Length = 616
Score = 67.2 bits (163), Expect = 6e-15
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 4 TYGENATRYTEEELTSQFMKILE-SQPSQVNPVGILTTQRRDMWAESWDILQKDEQNRAN 62
Y + T T +++ Q KI S + PVGILT+ R+ WA++++ L KD+ NR +
Sbjct: 195 VYHSDGTPLTADQIFVQLEKIWNSSLQTNKEPVGILTSNHRNSWAKAYNTLIKDKVNRDS 254
Query: 63 LDLIEKSLITICLD 76
+ I+KS+ T+CLD
Sbjct: 255 VRSIQKSIFTVCLD 268
>2deb_A CPT II, carnitine O-palmitoyltransferase II, mitochondrial; central
six-stranded beta-sheet; HET: BOG COA PLM; 1.60A {Rattus
norvegicus} PDB: 2fw3_A* 2fyo_A 2rcu_A* 2h4t_A*
Length = 653
Score = 62.6 bits (151), Expect = 2e-13
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 4 TYGENATRYTEEELTSQFMKILE-SQPSQVNPVGILTTQRRDMWAESWDILQKDEQNRAN 62
++ E+ + IL S P PV LT++ RD+WAE L D N
Sbjct: 251 VLDQDGNIVNPLEIQAHLKYILSDSSPVPEFPVAYLTSENRDVWAELRQKLIFD-GNEET 309
Query: 63 LDLIEKSLITICLDSVP 79
L ++ ++ +CLD P
Sbjct: 310 LKKVDSAVFCLCLDDFP 326
>1t1u_A Choline O-acetyltransferase; choline acetyltransferase; 1.55A
{Rattus norvegicus} SCOP: c.43.1.3 c.43.1.3 PDB: 1q6x_A
2fy2_A 2fy3_A 2fy4_A* 2fy5_A*
Length = 639
Score = 62.2 bits (150), Expect = 3e-13
Identities = 26/72 (36%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
Query: 8 NATRYTEEELTSQFMKILE---SQPSQVNPVGILTTQRRDMWAESWDILQKDEQNRANLD 64
N R +E +L +Q KI++ ++ ++ P+G+LT+ R WA++ +L KD NR +LD
Sbjct: 211 NFRRLSEGDLFTQLRKIVKMASNEDERLPPIGLLTSDGRSEWAKARTVLLKDSTNRDSLD 270
Query: 65 LIEKSLITICLD 76
+IE+ + +CLD
Sbjct: 271 MIERCICLVCLD 282
>1xl7_A COT, peroxisomal carnitine O-octanoyltransferase; selenomethionine,
hepes; HET: EPE; 2.00A {Mus musculus} SCOP: c.43.1.3
c.43.1.3 PDB: 1xl8_A* 1xmd_A* 1xmc_A*
Length = 612
Score = 52.5 bits (125), Expect = 8e-10
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 11 RYTEEELTSQFMKILE--SQPSQVNPVGILTTQRRDMWAESWDIL-QKDEQNRANLDLIE 67
T EL Q I + S + LT++ R WA++ + L D +N L+ I+
Sbjct: 211 LITPPELLRQLTYIHKKCSNEPVGPSIAALTSEERTRWAKAREYLISLDPENLTLLEKIQ 270
Query: 68 KSLITICLD 76
SL ++
Sbjct: 271 TSLFVYSIE 279
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.2 bits (93), Expect = 2e-05
Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 33/104 (31%)
Query: 12 YTEEELTSQFMKILESQPS-------QVNP--VGILTTQRRDM---WAESWDILQKDEQN 59
T +E+ S +K L+ +P NP + I+ RD W ++W + D+
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW-DNWKHVNCDKLT 356
Query: 60 RANLDLIEKSL--------------ITICLDSVPLSPSFIG--W 87
IE SL +++ S + + W
Sbjct: 357 TI----IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396
>2q0t_A Putative gamma-carboxymuconolactone decarboxylase; AHPD-like fold,
structural genomics, joint center for struct genomics,
JCSG; 1.70A {Burkholderia xenovorans} SCOP: a.152.1.1
Length = 263
Score = 25.4 bits (55), Expect = 2.8
Identities = 4/31 (12%), Positives = 7/31 (22%)
Query: 46 WAESWDILQKDEQNRANLDLIEKSLITICLD 76
E++ L K + D
Sbjct: 167 LFEAYVEFSSVPWRTGVLSPKIKEFMYCAFD 197
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.0 bits (54), Expect = 4.6
Identities = 18/89 (20%), Positives = 29/89 (32%), Gaps = 22/89 (24%)
Query: 1 MRLTYGENATRYTE--EELTSQFMKILESQPSQVNPVGILTTQRRDMWAESWDILQKDEQ 58
+R Y Y +L + L + TQ ++ W L+ +
Sbjct: 173 LRDLY----QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI--LEW--LE-NPS 223
Query: 59 NRANLDLIEKSLITICLDSVPLS-PSFIG 86
N + D L S+P+S P IG
Sbjct: 224 NTPDKDY---------LLSIPISCP-LIG 242
>4g9q_A 4-carboxymuconolactone decarboxylase; PSI-biology, nysgrc,
structural genomics, NEW YORK structura genomics
research consortium; 1.77A {Sinorhizobium meliloti}
Length = 269
Score = 24.1 bits (52), Expect = 7.5
Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 8/29 (27%)
Query: 46 WAESWDILQKDEQNRANLDLIEKSLITIC 74
+ + W R +L ++SL+TI
Sbjct: 189 FRDLW--------LRPDLAPRDRSLVTIA 209
>2af7_A Gamma-carboxymuconolactone decarboxylase; O26336_metth, NESG,
TT747, structural genomics, PSI, protein structure
initiative; 2.81A
{Methanothermobacterthermautotrophicus} SCOP: a.152.1.2
Length = 125
Score = 23.9 bits (52), Expect = 8.1
Identities = 6/29 (20%), Positives = 13/29 (44%), Gaps = 8/29 (27%)
Query: 46 WAESWDILQKDEQNRANLDLIEKSLITIC 74
+ + + +R LDL + L+T+
Sbjct: 42 YGDVY--------SRGVLDLKTRELLTLA 62
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.388
Gapped
Lambda K H
0.267 0.0588 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,208,588
Number of extensions: 53698
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 11
Length of query: 87
Length of database: 6,701,793
Length adjustment: 55
Effective length of query: 32
Effective length of database: 5,166,138
Effective search space: 165316416
Effective search space used: 165316416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.7 bits)