RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7502
         (87 letters)



>d1t1ua1 c.43.1.3 (A:20-401) Choline O-acetyltransferase {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 382

 Score = 60.4 bits (146), Expect = 4e-13
 Identities = 26/73 (35%), Positives = 46/73 (63%), Gaps = 3/73 (4%)

Query: 8   NATRYTEEELTSQFMKILE---SQPSQVNPVGILTTQRRDMWAESWDILQKDEQNRANLD 64
           N  R +E +L +Q  KI++   ++  ++ P+G+LT+  R  WA++  +L KD  NR +LD
Sbjct: 193 NFRRLSEGDLFTQLRKIVKMASNEDERLPPIGLLTSDGRSEWAKARTVLLKDSTNRDSLD 252

Query: 65  LIEKSLITICLDS 77
           +IE+ +  +CLD 
Sbjct: 253 MIERCICLVCLDG 265


>d1nm8a1 c.43.1.3 (A:9-385) Carnitine acetyltransferase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 377

 Score = 59.7 bits (144), Expect = 8e-13
 Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 4   TYGENATRYTEEELTSQFMKILE-SQPSQVNPVGILTTQRRDMWAESWDILQKDEQNRAN 62
            Y  + T  T +++  Q  KI   S  +   PVGILT+  R+ WA++++ L KD+ NR +
Sbjct: 187 VYHSDGTPLTADQIFVQLEKIWNSSLQTNKEPVGILTSNHRNSWAKAYNTLIKDKVNRDS 246

Query: 63  LDLIEKSLITICLD 76
           +  I+KS+ T+CLD
Sbjct: 247 VRSIQKSIFTVCLD 260


>d1xl7a1 c.43.1.3 (A:11-392) Peroxisomal carnitine
           O-octanoyltransferase, COT {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 382

 Score = 54.3 bits (130), Expect = 6e-11
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 3/72 (4%)

Query: 8   NATRYTEEELTSQFMKILE--SQPSQVNPVGILTTQRRDMWAESWD-ILQKDEQNRANLD 64
                T  EL  Q   I +  S       +  LT++ R  WA++ + ++  D +N   L+
Sbjct: 198 EGCLITPPELLRQLTYIHKKCSNEPVGPSIAALTSEERTRWAKAREYLISLDPENLTLLE 257

Query: 65  LIEKSLITICLD 76
            I+ SL    ++
Sbjct: 258 KIQTSLFVYSIE 269


>d2cwqa1 a.152.1.4 (A:1-117) Hypothetical protein TTHA0727
          {Thermus thermophilus [TaxId: 274]}
          Length = 117

 Score = 22.9 bits (49), Expect = 5.7
 Identities = 6/41 (14%), Positives = 14/41 (34%)

Query: 33 NPVGILTTQRRDMWAESWDILQKDEQNRANLDLIEKSLITI 73
            + +L  +   +  E           +  LD   ++LI +
Sbjct: 22 RAIPLLAEKAPGLLLEHGRSWTYAMPEKGALDEKTRTLILL 62


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.131    0.388 

Gapped
Lambda     K      H
   0.267   0.0578    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 301,149
Number of extensions: 10839
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 7
Length of query: 87
Length of database: 2,407,596
Length adjustment: 52
Effective length of query: 35
Effective length of database: 1,693,636
Effective search space: 59277260
Effective search space used: 59277260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.2 bits)