RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7503
(2713 letters)
>gnl|CDD|238006 cd00047, PTPc, Protein tyrosine phosphatases (PTP) catalyze the
dephosphorylation of phosphotyrosine peptides; they
regulate phosphotyrosine levels in signal transduction
pathways. The depth of the active site cleft renders the
enzyme specific for phosphorylated Tyr (pTyr) residues,
instead of pSer or pThr. This family has a distinctive
active site signature motif, HCSAGxGRxG. Characterized
as either transmembrane, receptor-like or
non-transmembrane (soluble) PTPs. Receptor-like PTP
domains tend to occur in two copies in the cytoplasmic
region of the transmembrane proteins, only one copy may
be active.
Length = 231
Score = 116 bits (294), Expect = 7e-29
Identities = 48/102 (47%), Positives = 61/102 (59%), Gaps = 11/102 (10%)
Query: 39 YINGGLLNYIHCFFPT-------GPMQNTVEDFWRMVWEQQTLVIIMTTRVIERGRNKCA 91
YIN +YI + P GP+ NTVEDFWRMVWEQ+ VI+M T ++E+GR KCA
Sbjct: 28 YINA---SYIDGYNPPKAYIATQGPLPNTVEDFWRMVWEQKVPVIVMLTELVEKGREKCA 84
Query: 92 QYWPGTEGTKMTHGDFLVTTECVTSSPDYVLSSLTLCNTKVN 133
QYWP EG+ +T+GD VT DY + +L L NT
Sbjct: 85 QYWPEEEGS-LTYGDITVTLVSEEKLDDYTVRTLKLSNTGTG 125
>gnl|CDD|214550 smart00194, PTPc, Protein tyrosine phosphatase, catalytic domain.
Length = 259
Score = 115 bits (290), Expect = 5e-28
Identities = 47/104 (45%), Positives = 62/104 (59%), Gaps = 10/104 (9%)
Query: 39 YINGGLLNYIHCFFPT-------GPMQNTVEDFWRMVWEQQTLVIIMTTRVIERGRNKCA 91
YIN +YI GP+ +TVEDFWRMVWEQ+ VI+M T ++E+GR KCA
Sbjct: 56 YINA---SYIDGPNGPKAYIATQGPLPSTVEDFWRMVWEQKVTVIVMLTELVEKGREKCA 112
Query: 92 QYWPGTEGTKMTHGDFLVTTECVTSSPDYVLSSLTLCNTKVNIT 135
QYWP EG +T+GD VT + V DY + +L + NT + T
Sbjct: 113 QYWPDEEGEPLTYGDITVTLKSVEKVDDYTIRTLEVTNTGCSET 156
>gnl|CDD|215717 pfam00102, Y_phosphatase, Protein-tyrosine phosphatase.
Length = 233
Score = 112 bits (282), Expect = 2e-27
Identities = 45/128 (35%), Positives = 59/128 (46%), Gaps = 26/128 (20%)
Query: 29 NKNRHK---------------STKQYINGGLLNYIHCFFPT-------GPMQNTVEDFWR 66
KNR+K YIN +YI + GP+ NT+EDFWR
Sbjct: 3 EKNRYKDILPYDHTRVKLTPGGPSDYINA---SYIDGYRKPRAFIATQGPLPNTIEDFWR 59
Query: 67 MVWEQQTLVIIMTTRVIERGRNKCAQYWPGTEGTKMTHGDFLVT-TECVTSSPDYVLSSL 125
MVWEQ+ I+M T + E+GR KC QYWP E +T+GD VT + DY + +
Sbjct: 60 MVWEQKVTTIVMLTELEEKGREKCDQYWPEEEEGSLTYGDISVTLVKEEEEEDDYTVRTF 119
Query: 126 TLCNTKVN 133
L N
Sbjct: 120 ELKNGGSE 127
>gnl|CDD|222923 PHA02738, PHA02738, hypothetical protein; Provisional.
Length = 320
Score = 75.0 bits (184), Expect = 8e-14
Identities = 36/96 (37%), Positives = 48/96 (50%), Gaps = 10/96 (10%)
Query: 39 YINGGLLNYIHCF-----FPTG--PMQNTVEDFWRMVWEQQTLVIIMTTRVIERGRNKCA 91
YIN NY+ F F G P + T DF+RM+W + +I+M + E GR KC
Sbjct: 77 YINA---NYVDGFEYKKKFICGQAPTRQTCYDFYRMLWMEHVQIIVMLCKKKENGREKCF 133
Query: 92 QYWPGTEGTKMTHGDFLVTTECVTSSPDYVLSSLTL 127
YW E + G F +TT V + P YV S+L L
Sbjct: 134 PYWSDVEQGSIRFGKFKITTTQVETHPHYVKSTLLL 169
>gnl|CDD|165109 PHA02742, PHA02742, protein tyrosine phosphatase; Provisional.
Length = 303
Score = 67.3 bits (164), Expect = 2e-11
Identities = 27/76 (35%), Positives = 47/76 (61%)
Query: 55 GPMQNTVEDFWRMVWEQQTLVIIMTTRVIERGRNKCAQYWPGTEGTKMTHGDFLVTTECV 114
P++ T DFW+ +++ Q VI+M T+++E G+ C YW E K THG+F + T+ +
Sbjct: 100 APLEETALDFWQAIFQDQVRVIVMITKIMEDGKEACYPYWMPHERGKATHGEFKIKTKKI 159
Query: 115 TSSPDYVLSSLTLCNT 130
S +Y +++L L +T
Sbjct: 160 KSFRNYAVTNLCLTDT 175
>gnl|CDD|165114 PHA02747, PHA02747, protein tyrosine phosphatase; Provisional.
Length = 312
Score = 62.7 bits (152), Expect = 7e-10
Identities = 33/135 (24%), Positives = 53/135 (39%), Gaps = 17/135 (12%)
Query: 42 GGLLNYIHC-----------FFPT-GPMQNTVEDFWRMVWEQQTLVIIMTTRV-IERGRN 88
G +YIH F T GP T DFW+ VW++ +I+M T G
Sbjct: 75 GSTSDYIHANWIDGFEDDKKFIATQGPFAETCADFWKAVWQEHCSIIVMLTPTKGTNGEE 134
Query: 89 KCAQYWPGTEGTKMTHGDFLVTTECVTSSPDYVLSSLTLCNTKVNITESSPDYVLSSLTL 148
KC QYW E + DF + T + Y+L+ + + + + + + S
Sbjct: 135 KCYQYWCLNEDGNIDMEDFRIETLKTSVRAKYILTLIEITDKILKDSRKISHFQCSEWFE 194
Query: 149 CNTKVNITESSPDYV 163
T + PD++
Sbjct: 195 DETPSDH----PDFI 205
>gnl|CDD|227886 COG5599, PTP2, Protein tyrosine phosphatase [Signal transduction
mechanisms].
Length = 302
Score = 52.9 bits (127), Expect = 1e-06
Identities = 29/83 (34%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Query: 34 KSTKQYINGGLL-----NYIHCFFPTGPMQNTVEDFWRMVWEQQTL--VIIMTTRVIERG 86
KS YIN + YI GP T++DFW+MVW VI+M T + E
Sbjct: 76 KSINDYINASYIKTPRGKYIAT---QGPKPETIDDFWKMVWHNVPNNGVIVMLTSLPEYN 132
Query: 87 RNKCAQYWPGTEGTKMTHGDFLV 109
R KC QYWP + G ++
Sbjct: 133 REKCDQYWPLGYDDTLIIGLRVI 155
>gnl|CDD|165113 PHA02746, PHA02746, protein tyrosine phosphatase; Provisional.
Length = 323
Score = 52.7 bits (126), Expect = 1e-06
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 20/107 (18%)
Query: 46 NYIHCFFPTG------------PMQNTVEDFWRMVWEQQTLVIIMTTRVIERGRNKCAQY 93
NYIH F G P ++T EDF++++ E ++ VI+ T I+ KC +
Sbjct: 99 NYIHANFVDGFKEANKFICAQGPKEDTSEDFFKLISEHESQVIVSLTD-IDDDDEKCFEL 157
Query: 94 WPGTEGTKMTHGDFLVTTECVTSSPDYVLSSLTLCNTKVNITESSPD 140
W E +++ G F+ ++ L+ T++ IT+ D
Sbjct: 158 WTKEEDSELAFGRFVAKIL-------DIIEELSFTKTRLMITDKISD 197
>gnl|CDD|165107 PHA02740, PHA02740, protein tyrosine phosphatase; Provisional.
Length = 298
Score = 44.2 bits (104), Expect = 6e-04
Identities = 14/74 (18%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 58 QNTVEDFWRMVWEQQTLVIIMTTRVIERGRNKCAQYWPGTEGTKMTHGDFLVTTECVTSS 117
++ + F + + + + +I++ +R ++ Q+W EG +T F + T +
Sbjct: 101 EDACDKFLQALSDNKVQIIVLISRHADK--KCFNQFWSLKEGCVITSDKFQIETLEIIIK 158
Query: 118 PDYVLSSLTLCNTK 131
P + L+ L+L +
Sbjct: 159 PHFNLTLLSLTDKF 172
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.308 0.123 0.339
Gapped
Lambda K H
0.267 0.0748 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 115,153,797
Number of extensions: 9985157
Number of successful extensions: 6609
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6409
Number of HSP's successfully gapped: 50
Length of query: 2713
Length of database: 10,937,602
Length adjustment: 114
Effective length of query: 2599
Effective length of database: 5,881,246
Effective search space: 15285358354
Effective search space used: 15285358354
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 68 (29.9 bits)