RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7503
(2713 letters)
>d1g4us2 c.45.1.2 (S:297-539) SptP tyrosine phosphatase, catalytic
domain {Salmonella typhimurium [TaxId: 90371]}
Length = 243
Score = 83.2 bits (205), Expect = 9e-18
Identities = 10/99 (10%), Positives = 29/99 (29%), Gaps = 8/99 (8%)
Query: 39 YIN------GGLLNYIHCFFPTGPMQNTVEDFWRMVWEQQTLVIIMTTRVIERGRNKCAQ 92
+ G + +P + +E +M+ E++ +++ T + +
Sbjct: 34 PVPVNTLTFDGKPVALAGSYPK-NTPDALEAHMKMLLEKECSCLVVLTSEDQMQAKQLPP 92
Query: 93 YWPGTEGTKMTHGDFLVTTECVTSSPDYVLSSLTLCNTK 131
Y+ G T + ++ L +
Sbjct: 93 YFRG-SYTFGEVHTNSQKVSSASQGEAIDQYNMQLSCGE 130
>d2f71a1 c.45.1.2 (A:2-298) Tyrosine phosphatase {Human (Homo
sapiens), 1B [TaxId: 9606]}
Length = 297
Score = 82.1 bits (202), Expect = 5e-17
Identities = 34/104 (32%), Positives = 46/104 (44%), Gaps = 12/104 (11%)
Query: 39 YINGGLLNYIHCFFPT-------GPMQNTVEDFWRMVWEQQTLVIIMTTRVIERGRNKCA 91
YIN + I GP+ NT FW MVWEQ++ ++M RV+E+G KCA
Sbjct: 65 YINA---SLIKMEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCA 121
Query: 92 QYWPGTEGTKMTHGDFLVTTECV--TSSPDYVLSSLTLCNTKVN 133
QYWP E +M D + + Y + L L N
Sbjct: 122 QYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQ 165
>d1lyva_ c.45.1.2 (A:) Protein-tyrosine phosphatase YopH, catalytic
domain {Yersinia enterocolitica [TaxId: 630]}
Length = 283
Score = 76.0 bits (186), Expect = 4e-15
Identities = 20/128 (15%), Positives = 37/128 (28%), Gaps = 18/128 (14%)
Query: 28 ENKNRHKSTKQY--------INGGLLNYIHCFFPT-----GPMQNTVEDFWRMVWEQQTL 74
E NR + + +N NYI P+Q+ +E +RM+ E +T
Sbjct: 39 EKLNRFRDIQCRRQTAVRADLNA---NYIQVGNTRTIACQYPLQSQLESHFRMLAENRTP 95
Query: 75 VIIMTTRVIERGRNKCAQYWPGTEGTKMTHGDFLVTTECVTSSPDYVLSSLTLCNTKVNI 134
V+ + E + T+G V ++ + +
Sbjct: 96 VLAVLASSSEIANQRFGMPDY--FRQSGTYGSITVESKMTQQVGLGDGIMADMYTLTIRE 153
Query: 135 TESSPDYV 142
V
Sbjct: 154 AGQKTISV 161
>d1wcha_ c.45.1.2 (A:) Tyrosine-protein phosphatase, non-receptor
type 13 (PTPL1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 308
Score = 76.0 bits (186), Expect = 7e-15
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 13/105 (12%)
Query: 39 YINGGLLNYIHCFFPT---------GPMQNTVEDFWRMVWEQQTLVIIMTTRVIERGRNK 89
YIN ++I GP+ TV DFW+M+WEQ++ VI M T+ +E + K
Sbjct: 93 YINA---SFIKIPVGKEEFVYIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEKIK 149
Query: 90 CAQYWPGTEG-TKMTHGDFLVTTECVTSSPDYVLSSLTLCNTKVN 133
C +YWP G T M + + +V+ ++TL + +
Sbjct: 150 CQRYWPNILGKTTMVSNRLRLALVRMQQLKGFVVRAMTLEDIQTR 194
>d1fpra_ c.45.1.2 (A:) Tyrosine phosphatase {Human (Homo sapiens),
shp-1 [TaxId: 9606]}
Length = 284
Score = 74.5 bits (182), Expect = 2e-14
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 16/116 (13%)
Query: 28 ENKNRHKSTKQYINGGLLNYIHCFFP------------TGPMQNTVEDFWRMVWEQQTLV 75
+ ++ + YIN NYI G ++ TV DFW+M W++ + V
Sbjct: 48 QGRDSNIPGSDYINA---NYIKNQLLGPDENAKTYIASQGCLEATVNDFWQMAWQENSRV 104
Query: 76 IIMTTRVIERGRNKCAQYWPGTEGTKMTHGDFLVTTECVTSSPDYVLSSLTLCNTK 131
I+MTTR +E+GRNKC YWP G + +G + VT + +Y L +L +
Sbjct: 105 IVMTTREVEKGRNKCVPYWP-EVGMQRAYGPYSVTNCGEHDTTEYKLRTLQVSPLD 159
>d2shpa1 c.45.1.2 (A:219-525) Tyrosine phosphatase {Human (Homo
sapiens), shp-2 [TaxId: 9606]}
Length = 307
Score = 74.1 bits (181), Expect = 3e-14
Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 56 PMQNTVEDFWRMVWEQQTLVIIMTTRVIERGRNKCAQYWPGTEGTKMTHGDFLVTTECVT 115
+QNTV DFWRMV+++ + VI+MTT+ +ERG++KC +YWP K +G V +
Sbjct: 115 CLQNTVNDFWRMVFQENSRVIVMTTKEVERGKSKCVKYWPDEYALKE-YGVMRVRNVKES 173
Query: 116 SSPDYVLSSLTLCNTKVNITE 136
++ DY L L L TE
Sbjct: 174 AAHDYTLRELKLSKVGQGNTE 194
>d1rpma_ c.45.1.2 (A:) Tyrosine phosphatase {Human (Homo sapiens),
mu [TaxId: 9606]}
Length = 278
Score = 73.3 bits (179), Expect = 3e-14
Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 55 GPMQNTVEDFWRMVWEQQTLVIIMTTRVIERGRNKCAQYWPGTEGTKMTHGDFLVTTECV 114
GPMQ T+ DFWRMVW + T IIM T ++E GR KC +YWP + D VT
Sbjct: 95 GPMQETIYDFWRMVWHENTASIIMVTNLVEVGRVKCCKYWPDDT---EIYKDIKVTLIET 151
Query: 115 TSSPDYVLSSLTLCNTKVN 133
+YV+ + + V+
Sbjct: 152 ELLAEYVIRTFAVEKRGVH 170
>d1l8ka_ c.45.1.2 (A:) Tyrosine phosphatase {Human (Homo sapiens),
T-cell [TaxId: 9606]}
Length = 273
Score = 72.6 bits (177), Expect = 6e-14
Identities = 36/127 (28%), Positives = 54/127 (42%), Gaps = 21/127 (16%)
Query: 28 EN--KNRHK--------------STKQYINGGLLNYIHC---FFPT-GPMQNTVEDFWRM 67
EN +NR++ + YIN L++ + T GP+ NT FW M
Sbjct: 37 ENRNRNRYRDVSPYDHSRVKLQNAENDYINASLVDIEEAQRSYILTQGPLPNTCCHFWLM 96
Query: 68 VWEQQTLVIIMTTRVIERGRNKCAQYWPGTEGTKMTH-GDFLVTTECVTSSPDYVLSSLT 126
VW+Q+T ++M R++E+ KCAQYWP + + F V Y + L
Sbjct: 97 VWQQKTKAVVMLNRIVEKESVKCAQYWPTDDQEMLFKETGFSVKLLSEDVKSYYTVHLLQ 156
Query: 127 LCNTKVN 133
L N
Sbjct: 157 LENINSG 163
>d1p15a_ c.45.1.2 (A:) Protein-tyrosine phosphatase alpha {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 245
Score = 71.0 bits (173), Expect = 1e-13
Identities = 35/102 (34%), Positives = 55/102 (53%), Gaps = 12/102 (11%)
Query: 39 YINGGLLNYIHCFFPT-------GPMQNTVEDFWRMVWEQQTLVIIMTTRVIERGRNKCA 91
Y+N ++I + GP+ +T+EDFWRM+WE ++ I+M T + ERG+ KCA
Sbjct: 39 YVNA---SFIDGYRQKDSYIASQGPLLHTIEDFWRMIWEWKSCSIVMLTELEERGQEKCA 95
Query: 92 QYWPGTEGTKMTHGDFLVTTECVTSSPDYVLSSLTLCNTKVN 133
QYWP +++GD V + Y + L + NT+ N
Sbjct: 96 QYWP--SDGLVSYGDITVELKKEEECESYTVRDLLVTNTREN 135
>d1yfoa_ c.45.1.2 (A:) Tyrosine phosphatase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 288
Score = 71.8 bits (175), Expect = 1e-13
Identities = 43/146 (29%), Positives = 62/146 (42%), Gaps = 16/146 (10%)
Query: 4 KNKQKVQKPLNCIFPQHILTLTKWENKNRHKSTKQYINGGLLNYIHCFFPT-------GP 56
+NK+K + + + LT E YIN ++I+ + GP
Sbjct: 48 ENKEKNRYVNILPYDHSRVHLTPVEGVPDS----DYINA---SFINGYQEKNKFIAAQGP 100
Query: 57 MQNTVEDFWRMVWEQQTLVIIMTTRVIERGRNKCAQYWPGTEGTKMTHGDFLVTTECVTS 116
+ TV DFWRM+WEQ T I+M T + ER KCAQYWP T+G+ V+ E VT
Sbjct: 101 KEETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPDQGC--WTYGNVRVSVEDVTV 158
Query: 117 SPDYVLSSLTLCNTKVNITESSPDYV 142
DY + + +
Sbjct: 159 LVDYTVRKFCIQQVGDVTNRKPQRLI 184
>d1lara2 c.45.1.2 (A:1628-1876) RPTP Lar {Human (Homo sapiens)
[TaxId: 9606]}
Length = 249
Score = 69.8 bits (170), Expect = 4e-13
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 12/104 (11%)
Query: 39 YINGGLLNYIHCFFPT-------GPMQNTVEDFWRMVWEQQTLVIIMTTRVIERGRNKCA 91
YIN +++ + GP+ + EDFWRM+WE + +I+M T++ E GR KC
Sbjct: 41 YINA---SFLDGYRQQKAYIATQGPLAESTEDFWRMLWEHNSTIIVMLTKLREMGREKCH 97
Query: 92 QYWPGTEGTKMTHGDFLVTTECVTSSPDYVLSSLTLCNTKVNIT 135
QYWP + F+V + P Y+L + + + +
Sbjct: 98 QYWPAERS--ARYQYFVVDPMAEYNMPQYILREFKVTDARDGQS 139
>d1lara1 c.45.1.2 (A:1307-1623) RPTP Lar {Human (Homo sapiens)
[TaxId: 9606]}
Length = 317
Score = 69.8 bits (170), Expect = 9e-13
Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 55 GPMQNTVEDFWRMVWEQQTLVIIMTTRVIERGRNKCAQYWPGTEGTKMTHGDFLVTTECV 114
GP+ T+ DFWRMVWEQ+T ++M TR+ E+ R KC QYWP T G VT
Sbjct: 93 GPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWP--ARGTETCGLIQVTLLDT 150
Query: 115 TSSPDYVLSSLTLCNTKVN 133
Y + + L + +
Sbjct: 151 VELATYTVRTFALHKSGSS 169
>d1jlna_ c.45.1.2 (A:) Tyrosine phosphatase {Mouse (Mus musculus),
ptp-sl/br7 [TaxId: 10090]}
Length = 297
Score = 62.5 bits (151), Expect = 1e-10
Identities = 36/101 (35%), Positives = 49/101 (48%), Gaps = 15/101 (14%)
Query: 39 YINGGLLNYIHCFFPT--------GPMQNTVEDFWRMVWEQQTLVIIMTTRVIERGRNKC 90
YIN NYI + GPM NTV DFW+MVW++ + VI+M T++ E+ KC
Sbjct: 87 YINA---NYIRGYSGKEKAFIATQGPMINTVNDFWQMVWQEDSPVIVMITKLKEKN-EKC 142
Query: 91 AQYWPGTEGTKMTHGDFLVTTECVTSSPDYVLSSLTLCNTK 131
YWP G +G V VT +Y + +L L
Sbjct: 143 VLYWPEKRG---IYGKVEVLVTGVTECDNYTIRNLVLKQGS 180
>d2pt0a1 c.45.1.4 (A:34-346) Myo-inositol hexaphosphate
phosphohydrolase (phytase) PhyA {Selenomonas ruminantium
[TaxId: 971]}
Length = 313
Score = 45.4 bits (107), Expect = 6e-05
Identities = 11/111 (9%), Positives = 18/111 (16%), Gaps = 18/111 (16%)
Query: 36 TKQYINGGLLNYIHCFFPTGPMQNTVEDF--------------WRMVWEQQTLVII-MTT 80
+ + L N D W + L
Sbjct: 72 SSAFTPAQLKNVAAKLREKTAGPIYDVDLRQESHGYLDGIPVSWYGERDWANLGKSQHEA 131
Query: 81 RVIERGRNKCAQYWPGTEGTKMTHGDFLVTTECVTSSPDYVLSSLTLCNTK 131
ER R A + + E V + +
Sbjct: 132 LADERHRLHAALHKTVYI-APLGKHKLPEGGE--VRRVQKVQTEQEVAEAA 179
>d1rxda_ c.45.1.1 (A:) Protein tyrosine phosphatase type IVa
{Human (Homo sapiens), pr-1 [TaxId: 9606]}
Length = 152
Score = 42.4 bits (99), Expect = 1e-04
Identities = 6/48 (12%), Positives = 13/48 (27%), Gaps = 7/48 (14%)
Query: 55 GPMQNTVEDFWRMVWEQQTLVIIMTTR-------VIERGRNKCAQYWP 95
P T+ F + + I+ V + G + +
Sbjct: 16 NPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPFD 63
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.308 0.123 0.339
Gapped
Lambda K H
0.267 0.0471 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 8,214,672
Number of extensions: 332412
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 15
Length of query: 2713
Length of database: 2,407,596
Length adjustment: 101
Effective length of query: 2612
Effective length of database: 1,020,866
Effective search space: 2666501992
Effective search space used: 2666501992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (27.9 bits)