RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7504
(357 letters)
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structur initiative;
1.90A {Vibrio parahaemolyticus}
Length = 230
Score = 123 bits (311), Expect = 1e-33
Identities = 37/178 (20%), Positives = 70/178 (39%), Gaps = 28/178 (15%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYILNNVGVV-----SPDPIF 212
+V+TG++ G+G A L RS KL + NNVG S +
Sbjct: 4 IVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCLSNNVGYRARDLASHQEVE 63
Query: 213 RSFDATPS----------------------DQIWNEIIINAGATALMTKLVLPRMKLKRR 250
+ F+ S +QI I N + + + ++ R K +
Sbjct: 64 QLFEQLDSIPSTVVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYK-DQP 122
Query: 251 GIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYPGLVDTNM 308
+V + S ++++P + Y A K ++ +S++ EL +++ +YPG + T
Sbjct: 123 VNVVMIMSTAAQQPKAQESTYCAVKWAVKGLIESVRLELKGKPMKIIAVYPGGMATEF 180
Score = 113 bits (286), Expect = 5e-30
Identities = 28/157 (17%), Positives = 51/157 (32%), Gaps = 11/157 (7%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
V+TG++ G+G A L R+ KL+ N + D +
Sbjct: 5 VITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCLSNNVGY----RARDLASHQ 60
Query: 62 QVYAHIEKELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMTRML 121
+V + ++L +V++ G F + E + I N + + R L
Sbjct: 61 EV-EQLFEQLDS-IPSTVVHSAGSGY----FGLLQEQDPEQIQTLIENNLSSAINVLREL 114
Query: 122 LPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFV 158
+ K + +V + S Y K V
Sbjct: 115 VKRYKDQPVN-VVMIMSTAAQQPKAQESTYCAVKWAV 150
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase,
short chain dehydrogenase/reductase, oxidoreductase;
HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB:
3ai2_A* 3ai1_A*
Length = 263
Score = 123 bits (310), Expect = 4e-33
Identities = 48/178 (26%), Positives = 78/178 (43%), Gaps = 11/178 (6%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
V+TGS+ GIG A A AK +VL++R + +L++ A +++++ V V + D +
Sbjct: 11 VITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPE 70
Query: 62 QVYAHIEKELQDM-DVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMTRM 120
V A +E ILVNN G + + E + A ++ R
Sbjct: 71 GVDAVVESVRSSFGGADILVNNAGTGSNET----IMEAADEKWQFYWELLVMAAVRLARG 126
Query: 121 LLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQLAKR 178
L+P M+ R G I+ SI V Y Y+ TKA ++ K A ++ K
Sbjct: 127 LVPGMRARGGGAIIHNASICAVQPLWYEPIYNVTKAALM------MFSKTLATEVIKD 178
Score = 105 bits (265), Expect = 1e-26
Identities = 48/199 (24%), Positives = 83/199 (41%), Gaps = 46/199 (23%)
Query: 152 SGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYIL----------- 200
SG A + TGS+ GIG A A AK ++VL++R +++L A +
Sbjct: 6 SGKVAVI--TGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVA 63
Query: 201 ---------------------------NNVGVVSPDPIFRSFDATPSDQIWNEII-INAG 232
NN G S + I + +D+ W +
Sbjct: 64 VDVATPEGVDAVVESVRSSFGGADILVNNAGTGSNETIMEA-----ADEKWQFYWELLVM 118
Query: 233 ATALMTKLVLPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEY 292
A + + ++P M+ + G I++ S+ + +P + Y TKA + +FSK+L E+ +
Sbjct: 119 AAVRLARGLVPGMRARGGGAIIHNASICAVQPLWYEPIYNVTKAALMMFSKTLATEVIKD 178
Query: 293 NIQVQYLYPGLVDTNMTKD 311
NI+V + PGL+ T
Sbjct: 179 NIRVNCINPGLILTPDWIK 197
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum
pernix}
Length = 260
Score = 118 bits (297), Expect = 3e-31
Identities = 42/178 (23%), Positives = 72/178 (40%), Gaps = 11/178 (6%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYD-VEVKIIQADFSEG 60
VVT + G+G A A+ELA+ L+L SR +KL A+ I +V I+ D E
Sbjct: 11 VVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREP 70
Query: 61 LQVYAHIEKELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMTRM 120
+ EK ILV + G P F ++ E + + + R
Sbjct: 71 GDIDRLFEKARDLGGADILVYSTGGPRPGR----FMELGVEDWDESYRLLARSAVWVGRR 126
Query: 121 LLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQLAKR 178
M ++ G +V++GS+ + + + V+ G+ + A++LA
Sbjct: 127 AAEQMVEKGWGRMVYIGSVTLLRPWQDLALSNIMRLPVI------GVVRTLALELAPH 178
Score = 99 bits (250), Expect = 1e-24
Identities = 39/199 (19%), Positives = 71/199 (35%), Gaps = 46/199 (23%)
Query: 152 SGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYI------------ 199
G A V T + G+G A A++LA+ L+L SR+ EKL+ A I
Sbjct: 6 QGKLAVV--TAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIV 63
Query: 200 --------------------------LNNVGVVSPDPIFRSFDATPSDQIWNEII-INAG 232
+ + G P + W+E + A
Sbjct: 64 AGDIREPGDIDRLFEKARDLGGADILVYSTGGPRPGRFMEL-----GVEDWDESYRLLAR 118
Query: 233 ATALMTKLVLPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEY 292
+ + + +M K G +V +GS++ +P L + + ++L EL +
Sbjct: 119 SAVWVGRRAAEQMVEKGWGRMVYIGSVTLLRPWQDLALSNIMRLPVIGVVRTLALELAPH 178
Query: 293 NIQVQYLYPGLVDTNMTKD 311
+ V + P L+ T+ +
Sbjct: 179 GVTVNAVLPSLILTDRVRS 197
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
SCOP: c.2.1.2
Length = 272
Score = 116 bits (292), Expect = 2e-30
Identities = 45/159 (28%), Positives = 65/159 (40%), Gaps = 6/159 (3%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
++TG+ GIG+ A E AK K LVL L +TA + + +V D S
Sbjct: 35 LITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKG-LGAKVHTFVVDCSNRE 93
Query: 62 QVYAHIEKELQDM-DVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMTRM 120
+Y+ +K ++ DV ILVNN G+ + VN A T+
Sbjct: 94 DIYSSAKKVKAEIGDVSILVNNAGVVYTSD----LFATQDPQIEKTFEVNVLAHFWTTKA 149
Query: 121 LLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVV 159
LP M + G IV V S P+ + Y +K V
Sbjct: 150 FLPAMTKNNHGHIVTVASAAGHVSVPFLLAYCSSKFAAV 188
Score = 110 bits (276), Expect = 4e-28
Identities = 51/194 (26%), Positives = 69/194 (35%), Gaps = 44/194 (22%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYI------------------ 199
V++TG+ GIG+ A + AK K LVL + L+ TA
Sbjct: 34 VLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNRE 93
Query: 200 -------------------LNNVGVVSPDPIFRSFDATPSDQIWNEIIINAGATALMTKL 240
+NN GVV AT QI +N A TK
Sbjct: 94 DIYSSAKKVKAEIGDVSILVNNAGVVY----TSDLFATQDPQIEKTFEVNVLAHFWTTKA 149
Query: 241 VLPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEY---NIQVQ 297
LP M G IV + S + PFL Y ++K F K+L EL ++
Sbjct: 150 FLPAMTKNNHGHIVTVASAAGHVSVPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTT 209
Query: 298 YLYPGLVDTNMTKD 311
L P V+T K+
Sbjct: 210 CLCPNFVNTGFIKN 223
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 114 bits (287), Expect = 8e-30
Identities = 53/178 (29%), Positives = 83/178 (46%), Gaps = 14/178 (7%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQY-DVEVKIIQADFSEG 60
+VTGST GIGKA A L ++++ R + +N+T EIR QY D ++ + AD
Sbjct: 14 LVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTE 73
Query: 61 LQVYAHIEKELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMTRM 120
IE + +D IL+NN+GI P + DI E + VN + ++TR
Sbjct: 74 QGCQDVIE-KYPKVD--ILINNLGIFEPVE----YFDIPDEDWFKLFEVNIMSGVRLTRS 126
Query: 121 LLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQLAKR 178
L M +RK G ++F+ S + S +YS TK + + ++ A
Sbjct: 127 YLKKMIERKEGRVIFIASEAAIMPSQEMAHYSATKTMQL------SLSRSLAELTTGT 178
Score = 103 bits (259), Expect = 8e-26
Identities = 45/196 (22%), Positives = 74/196 (37%), Gaps = 43/196 (21%)
Query: 152 SGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYIL----------- 200
G A V TGST GIGKA A L N+++ R E + T + I
Sbjct: 9 KGKTALV--TGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPV 66
Query: 201 ------------------------NNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATA 235
NN+G+ P F D+ W ++ +N +
Sbjct: 67 VADLGTEQGCQDVIEKYPKVDILINNLGIFEPVEYFDI-----PDEDWFKLFEVNIMSGV 121
Query: 236 LMTKLVLPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQ 295
+T+ L +M ++ G ++ + S ++ P + +Y+ATK S+SL N+
Sbjct: 122 RLTRSYLKKMIERKEGRVIFIASEAAIMPSQEMAHYSATKTMQLSLSRSLAELTTGTNVT 181
Query: 296 VQYLYPGLVDTNMTKD 311
V + PG T +
Sbjct: 182 VNTIMPGSTLTEGVET 197
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 113 bits (284), Expect = 1e-29
Identities = 47/189 (24%), Positives = 76/189 (40%), Gaps = 37/189 (19%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYILNNVGVVSPDPIFRSFDA 217
++TG++ GIG A LA +VLI+RS + L+ + I +PI D
Sbjct: 10 AIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEI-MRSNKHVQEPIVLPLDI 68
Query: 218 TPSDQI-----------------------------------WNEII-INAGATALMTKLV 241
T + + +I+ IN A + K V
Sbjct: 69 TDCTKADTEIKDIHQKYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTV 128
Query: 242 LPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYP 301
MK+++ G I N+ S +++ Y +TK + ++SL EL I+V L P
Sbjct: 129 TEIMKVQKNGYIFNVASRAAKYGFADGGIYGSTKFALLGLAESLYRELAPLGIRVTTLCP 188
Query: 302 GLVDTNMTK 310
G V+T+M K
Sbjct: 189 GWVNTDMAK 197
Score = 108 bits (271), Expect = 1e-27
Identities = 42/180 (23%), Positives = 72/180 (40%), Gaps = 14/180 (7%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQ--YDVEVKIIQADFSE 59
++TG++ GIG A LA +VLI+R+ Q L +EI + + E ++ D ++
Sbjct: 11 IITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITD 70
Query: 60 GLQVYAHIEKELQDM-DVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMT 118
+ I+ Q V ILVN + D+ K + +N A +
Sbjct: 71 CTKADTEIKDIHQKYGAVDILVNAAAMFMDGSLSEPVDNFRKI-----MEINVIAQYGIL 125
Query: 119 RMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQLAKR 178
+ + MK +K G I V S + Y TK + G+ ++ +LA
Sbjct: 126 KTVTEIMKVQKNGYIFNVASRAAKYGFADGGIYGSTKFAL------LGLAESLYRELAPL 179
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 112 bits (283), Expect = 1e-29
Identities = 34/187 (18%), Positives = 75/187 (40%), Gaps = 41/187 (21%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYI------------------ 199
+++TG+ G+G+A I L +R + ++ R ++L+ +
Sbjct: 6 IIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLGNAVIGIVADLAHHEDVD 65
Query: 200 ----------------LNNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTKLVL 242
L+ G F ++Q ++ N +T L+ + +
Sbjct: 66 VAFAAAVEWGGLPELVLHCAGTG----EFGPVGVYTAEQ-IRRVMESNLVSTILVAQQTV 120
Query: 243 PRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYPG 302
+ +R G++ N+ S +++ + Y A+K M F +SL+AEL + +++ LYP
Sbjct: 121 RLIG-ERGGVLANVLSSAAQVGKANESLYCASKWGMRGFLESLRAELKDSPLRLVNLYPS 179
Query: 303 LVDTNMT 309
+ +
Sbjct: 180 GIRSEFW 186
Score = 102 bits (257), Expect = 9e-26
Identities = 29/178 (16%), Positives = 62/178 (34%), Gaps = 16/178 (8%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+VTG+ G+G+A I L +R + ++ R Q+L + V I AD +
Sbjct: 7 IVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLL----GNAVIGIVADLAHHE 62
Query: 62 QVYAHIEKELQDM-DVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMTRM 120
V ++ ++++ G F + E + + N + + +
Sbjct: 63 DVDVAFAAAVEWGGLPELVLHCAGTGE----FGPVGVYTAEQIRRVMESNLVSTILVAQQ 118
Query: 121 LLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQLAKR 178
+ + +R G++ V S Y +K + G ++ +L
Sbjct: 119 TVRLIGER-GGVLANVLSSAAQVGKANESLYCASKWGMR------GFLESLRAELKDS 169
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 108 bits (272), Expect = 7e-28
Identities = 36/184 (19%), Positives = 58/184 (31%), Gaps = 30/184 (16%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYILNNVGV--------VSPD 209
V+ + GIG + +L KR + +I +E AE N V V+
Sbjct: 8 VIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVP 67
Query: 210 P--IFRSFDATP----------------SDQIWNEII-INAGATALMTKLVLPRM---KL 247
+ D I IN T +L K
Sbjct: 68 VAESKKLLKKIFDQLKTVDILINGAGILDDHQIERTIAINFTGLVNTTTAILDFWDKRKG 127
Query: 248 KRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYPGLVDTN 307
GII N+ S++ + Y+A+KA + F+ SL + + PG+ T
Sbjct: 128 GPGGIIANICSVTGFNAIHQVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTP 187
Query: 308 MTKD 311
+
Sbjct: 188 LVHT 191
Score = 98.9 bits (247), Expect = 3e-24
Identities = 36/184 (19%), Positives = 62/184 (33%), Gaps = 27/184 (14%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQAD----F 57
+ + GIG + EL KR + +I ++ A V + D
Sbjct: 9 IFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPV 68
Query: 58 SEGLQVYAHIEKELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQM 117
+E ++ I +L+ +D IL+N GI H + + I +N
Sbjct: 69 AESKKLLKKIFDQLKTVD--ILINGAGILDDH----QIERT--------IAINFTGLVNT 114
Query: 118 TRMLLPHM-KQR--KRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQ 174
T +L K++ G+I + S+ YS +KA VV + A
Sbjct: 115 TTAILDFWDKRKGGPGGIIANICSVTGFNAIHQVPVYSASKAAVV------SFTNSLAKL 168
Query: 175 LAKR 178
Sbjct: 169 APIT 172
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to pseudotropine;
HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2
PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Length = 260
Score = 107 bits (271), Expect = 2e-27
Identities = 45/184 (24%), Positives = 72/184 (39%), Gaps = 23/184 (12%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+VTG + GIG ELA + SR ++LND + R + +V+ D S
Sbjct: 13 LVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSK-GFKVEASVCDLSSRS 71
Query: 62 QVYAHIEKELQDMD--VGILVNNVGIAPPHPTFR----KFDDISKEHLYNEITVNTGAPS 115
+ + + ILVNN GI + I +++N A
Sbjct: 72 ERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLI--------MSINFEAAY 123
Query: 116 QMTRMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVV-LTGSTDGIGKAYAIQ 174
++ + P +K +RG +VF+ S+ PY Y TK + LT + A +
Sbjct: 124 HLSVLAHPFLKASERGNVVFISSVSGALAVPYEAVYGATKGAMDQLT-------RCLAFE 176
Query: 175 LAKR 178
AK
Sbjct: 177 WAKD 180
Score = 104 bits (262), Expect = 2e-26
Identities = 48/199 (24%), Positives = 78/199 (39%), Gaps = 46/199 (23%)
Query: 152 SGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEY------------- 198
G A V TG + GIG +LA ++ SR+ ++L +
Sbjct: 8 EGCTALV--TGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVC 65
Query: 199 ------------------------IL-NNVGVVSPDPIFRSFDATPSDQIWNEII-INAG 232
IL NN G+V D T D ++ I+ IN
Sbjct: 66 DLSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAK---DYTVED--YSLIMSINFE 120
Query: 233 ATALMTKLVLPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEY 292
A ++ L P +K RG +V + S+S P+ Y ATK M+ ++ L E +
Sbjct: 121 AAYHLSVLAHPFLKASERGNVVFISSVSGALAVPYEAVYGATKGAMDQLTRCLAFEWAKD 180
Query: 293 NIQVQYLYPGLVDTNMTKD 311
NI+V + PG++ T++ +
Sbjct: 181 NIRVNGVGPGVIATSLVEM 199
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A*
3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A*
3ch6_A* 2irw_A* 2ilt_A* ...
Length = 286
Score = 108 bits (271), Expect = 2e-27
Identities = 43/239 (17%), Positives = 85/239 (35%), Gaps = 56/239 (23%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYIL----------------- 200
V++TG++ GIG+ A LAK ++V+ +RS E L+ + L
Sbjct: 31 VIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDM 90
Query: 201 ---------------------NNVGVVSPDPIFRSFDATPSDQIWNEIIINAGATALMTK 239
N + + + +N + ++T
Sbjct: 91 TFAEQFVAQAGKLMGGLDMLILNHITN----TSLNLFHDDIHHVRKSMEVNFLSYVVLTV 146
Query: 240 LVLPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYE--YNIQVQ 297
LP +K + G IV + SL+ + +P + Y+A+K ++ F S++ E N+ +
Sbjct: 147 AALPMLK-QSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSIT 205
Query: 298 YLYPGLVDTNMTKDNSLTAKNIPLSIQP----------ILYPNARLYASWAVSTLGLLR 346
GL+DT +++ + +Y ++ T L+R
Sbjct: 206 LCVLGLIDTETAM-KAVSGIVHMQAAPKEECALEIIKGGALRQEEVYYDSSLWTTLLIR 263
Score = 106 bits (267), Expect = 8e-27
Identities = 34/156 (21%), Positives = 59/156 (37%), Gaps = 6/156 (3%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+VTG++ GIG+ A LAK +V+ +R+ + L + + I +
Sbjct: 32 IVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMT 91
Query: 62 QVYAHIEKELQDMD-VGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMTRM 120
+ + + M + +L+ N H+ + VN + +T
Sbjct: 92 FAEQFVAQAGKLMGGLDMLILNHITNT----SLNLFHDDIHHVRKSMEVNFLSYVVLTVA 147
Query: 121 LLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKA 156
LP +KQ G IV V S+ P YS +K
Sbjct: 148 ALPMLKQSN-GSIVVVSSLAGKVAYPMVAAYSASKF 182
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET:
NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A*
1sep_A* 1z6z_A*
Length = 259
Score = 107 bits (268), Expect = 3e-27
Identities = 39/203 (19%), Positives = 71/203 (34%), Gaps = 53/203 (26%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRK---MNLVLISRSMEKLKNTAEYI--------------- 199
VLTG++ G G+A A QLA+ +++ +RS L+ E +
Sbjct: 9 CVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAAD 68
Query: 200 ----------------------------LNNVGVVSPDPIFRSFDATPSDQIWNEII-IN 230
+NN + ++ N +N
Sbjct: 69 LGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAE--VNNYWALN 126
Query: 231 AGATALMTKLVLPRMKLKR--RGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAE 288
+ +T L + +VN+ SL + +P+ Y A KA ++ + L AE
Sbjct: 127 LTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQPYKGWGLYCAGKAARDMLYQVLAAE 186
Query: 289 LYEYNIQVQYLYPGLVDTNMTKD 311
E +++V PG +D +M +
Sbjct: 187 --EPSVRVLSYAPGPLDNDMQQL 207
Score = 105 bits (265), Expect = 8e-27
Identities = 30/168 (17%), Positives = 62/168 (36%), Gaps = 12/168 (7%)
Query: 2 VVTGSTDGIGKAYAIELAKRK---MDLVLISRTLQKLNDTANEIRKQY-DVEVKIIQADF 57
V+TG++ G G+A A +LA+ +++ +R+ L E+ Q D++V + AD
Sbjct: 10 VLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADL 69
Query: 58 SEGLQVYAHIEK-----ELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTG 112
V + + + +L+NN + + + N +N
Sbjct: 70 GTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGD-VSKGFLNVNDLAEVNNYWALNLT 128
Query: 113 APSQMTRMLLPHMKQRK--RGMIVFVGSIVQVFKSPYFVNYSGTKAFV 158
+ +T L + +V + S+ + + Y KA
Sbjct: 129 SMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQPYKGWGLYCAGKAAR 176
>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics,
unknown function, oxidoreductase, PSI- 2; 2.40A
{Corynebacterium glutamicum}
Length = 245
Score = 106 bits (267), Expect = 3e-27
Identities = 37/185 (20%), Positives = 71/185 (38%), Gaps = 39/185 (21%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYI------------------ 199
V+TG+T G+G L+ R + + R+ E L AE
Sbjct: 8 AVVTGATGGMGIEIVKDLS-RDHIVYALGRNPEHLAALAEIEGVEPIESDIVKEVLEEGG 66
Query: 200 -------------LNNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTKLVLPRM 245
++ V I + ++ W+ + +N A +++ +LP +
Sbjct: 67 VDKLKNLDHVDTLVHAAAVARDTTIEA---GSVAE--WHAHLDLNVIVPAELSRQLLPAL 121
Query: 246 KLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYPGLVD 305
+ G ++ + S + PHP T YAA+K + + + + E I+V + PG +
Sbjct: 122 R-AASGCVIYINSGAGNGPHPGNTIYAASKHALRGLADAFRKEEANNGIRVSTVSPGPTN 180
Query: 306 TNMTK 310
T M +
Sbjct: 181 TPMLQ 185
Score = 91.1 bits (227), Expect = 1e-21
Identities = 36/179 (20%), Positives = 73/179 (40%), Gaps = 22/179 (12%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
VVTG+T G+G +L+ R + + R + L A V+ I++D + +
Sbjct: 9 VVTGATGGMGIEIVKDLS-RDHIVYALGRNPEHLAALAEIEG------VEPIESDIVKEV 61
Query: 62 QVYAHIE--KELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMTR 119
++ K L +D LV+ +A + S + + +N P++++R
Sbjct: 62 LEEGGVDKLKNLDHVDT--LVHAAAVARDTT----IEAGSVAEWHAHLDLNVIVPAELSR 115
Query: 120 MLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQLAKR 178
LLP ++ G ++++ S P Y+ +K + G+ A+ + A
Sbjct: 116 QLLPALRAA-SGCVIYINSGAGNGPHPGNTIYAASKHAL------RGLADAFRKEEANN 167
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 106 bits (268), Expect = 4e-27
Identities = 41/184 (22%), Positives = 74/184 (40%), Gaps = 23/184 (12%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+VTG + GIG A ELA + SR ++L++ R++ + V+ D
Sbjct: 25 LVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREK-GLNVEGSVCDLLSRT 83
Query: 62 QVYAHIEKELQDMD--VGILVNNVGIAPPHPTFR----KFDDISKEHLYNEITVNTGAPS 115
+ ++ D + ILVNN G+ ++ I + N A
Sbjct: 84 ERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNII--------MGTNFEAAY 135
Query: 116 QMTRMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVV-LTGSTDGIGKAYAIQ 174
++++ P +K + G ++F+ SI P YS +K + +T K+ A +
Sbjct: 136 HLSQIAYPLLKASQNGNVIFLSSIAGFSALPSVSLYSASKGAINQMT-------KSLACE 188
Query: 175 LAKR 178
AK
Sbjct: 189 WAKD 192
Score = 105 bits (264), Expect = 2e-26
Identities = 48/199 (24%), Positives = 80/199 (40%), Gaps = 46/199 (23%)
Query: 152 SGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEY------------- 198
GT A V TG + GIG A +LA + SR+ ++L E
Sbjct: 20 KGTTALV--TGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVC 77
Query: 199 ------------------------IL-NNVGVVSPDPIFRSFDATPSDQIWNEII-INAG 232
IL NN GVV D T D +N I+ N
Sbjct: 78 DLLSRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAK---DFTEKD--YNIIMGTNFE 132
Query: 233 ATALMTKLVLPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEY 292
A ++++ P +K + G ++ + S++ P ++ Y+A+K + +KSL E +
Sbjct: 133 AAYHLSQIAYPLLKASQNGNVIFLSSIAGFSALPSVSLYSASKGAINQMTKSLACEWAKD 192
Query: 293 NIQVQYLYPGLVDTNMTKD 311
NI+V + PG++ T + +
Sbjct: 193 NIRVNSVAPGVILTPLVET 211
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 1.87A
{Rhodopseudomonas palustris}
Length = 252
Score = 105 bits (265), Expect = 7e-27
Identities = 30/177 (16%), Positives = 54/177 (30%), Gaps = 11/177 (6%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
V G+ D IG A + A + R +KL EI + D
Sbjct: 11 AVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAA-GGRIVARSLDARNED 69
Query: 62 QVYAHIEKELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMTRML 121
+V A + + + + NVG P + + + A R
Sbjct: 70 EVTAFLNAADAHAPLEVTIFNVGANVNFP----ILETTDRVFRKVWEMACWAGFVSGRES 125
Query: 122 LPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQLAKR 178
M +G I F G+ + F ++ K + + ++ A +L +
Sbjct: 126 ARLMLAHGQGKIFFTGATASLRGGSGFAAFASAKFGLR------AVAQSMARELMPK 176
Score = 104 bits (261), Expect = 3e-26
Identities = 36/194 (18%), Positives = 62/194 (31%), Gaps = 43/194 (22%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYI------------------ 199
V + G+ D IG A + A + R+ EKL I
Sbjct: 10 VAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNED 69
Query: 200 ------------------LNNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTKL 240
+ NVG PI + T + ++ + A + +
Sbjct: 70 EVTAFLNAADAHAPLEVTIFNVGANVNFPIL---ETTDRV--FRKVWEMACWAGFVSGRE 124
Query: 241 VLPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLY 300
M +G I G+ +S + +A+ K + ++S+ EL NI V +L
Sbjct: 125 SARLMLAHGQGKIFFTGATASLRGGSGFAAFASAKFGLRAVAQSMARELMPKNIHVAHLI 184
Query: 301 -PGLVDTNMTKDNS 313
VDT ++
Sbjct: 185 IDSGVDTAWVRERR 198
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 249
Score = 105 bits (265), Expect = 8e-27
Identities = 39/183 (21%), Positives = 64/183 (34%), Gaps = 30/183 (16%)
Query: 152 SGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYIL----------- 200
V ++ GIG+A A L++ + + +R+ E LK + +
Sbjct: 18 RDKGVLV--LAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRYVVCDLRKDLDLL 75
Query: 201 -----------NNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTKLVLPRMKLK 248
N G F ++ + E I + + LP MK K
Sbjct: 76 FEKVKEVDILVLNAGG-PKAGFFDELT----NEDFKEAIDSLFLNMIKIVRNYLPAMKEK 130
Query: 249 RRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYPGLVDTNM 308
G IV + S S P L + + + F K+L E+ Y I V + PG +T
Sbjct: 131 GWGRIVAITSFSVISPIENLYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETER 190
Query: 309 TKD 311
K+
Sbjct: 191 VKE 193
Score = 95.3 bits (238), Expect = 5e-23
Identities = 33/177 (18%), Positives = 70/177 (39%), Gaps = 25/177 (14%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+V ++ GIG+A A L++ ++ + +R + L + + + D + L
Sbjct: 23 LVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHR----------YVVCDLRKDL 72
Query: 62 QVYAHIEKELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMTRML 121
+ ++++++D ILV N G FD+++ E I ++ R
Sbjct: 73 ---DLLFEKVKEVD--ILVLNAGGPKAGF----FDELTNEDFKEAIDSLFLNMIKIVRNY 123
Query: 122 LPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQLAKR 178
LP MK++ G IV + S + + + + G K + ++A
Sbjct: 124 LPAMKEKGWGRIVAITSFSVISPIENLYTSNSARMALT------GFLKTLSFEVAPY 174
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B),
NAD(P)-binding rossmann-fold structural genomics,
NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}
Length = 207
Score = 104 bits (262), Expect = 8e-27
Identities = 32/184 (17%), Positives = 59/184 (32%), Gaps = 40/184 (21%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYI------------------ 199
V++TG+T G+G A+A L L+L R L A +
Sbjct: 3 VLITGATGGLGGAFARALKGHD--LLLSGRRAGALAELAREVGARALPADLADELEAKAL 60
Query: 200 ----------LNNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTKLVLPRMKLK 248
++ VG + + E++ + A VL + +
Sbjct: 61 LEEAGPLDLLVHAVGKAGRASVREAGRDL-----VEEMLAAHLLTAAF----VLKHARFQ 111
Query: 249 RRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYPGLVDTNM 308
+ V G+ P YAA K +E + ++ + EL + + + V T +
Sbjct: 112 KGARAVFFGAYPRYVQVPGFAAYAAAKGALEAYLEAARKELLREGVHLVLVRLPAVATGL 171
Query: 309 TKDN 312
Sbjct: 172 WAPL 175
Score = 92.2 bits (230), Expect = 2e-22
Identities = 34/158 (21%), Positives = 66/158 (41%), Gaps = 19/158 (12%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
++TG+T G+G A+A L L+L R L + A E+ + + AD ++ L
Sbjct: 4 LITGATGGLGGAFARALKGHD--LLLSGRRAGALAELAREVG------ARALPADLADEL 55
Query: 62 QVYAHIEKELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMTRML 121
+ + +E +D+ LV+ VG A + ++ + + + +
Sbjct: 56 EA-KALLEEAGPLDL--LVHAVGKAG----RASVREAGRDLVEEMLAAHLLT----AAFV 104
Query: 122 LPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVV 159
L H + +K VF G+ + + P F Y+ K +
Sbjct: 105 LKHARFQKGARAVFFGAYPRYVQVPGFAAYAAAKGALE 142
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta;
rossman fold, structural genomics, NPPSFA; 2.40A
{Thermus thermophilus}
Length = 234
Score = 105 bits (264), Expect = 8e-27
Identities = 44/199 (22%), Positives = 80/199 (40%), Gaps = 41/199 (20%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYI------------------ 199
V++TG++ GIG+A A L + + L++R ++L+ A +
Sbjct: 8 VLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAELEGALPLPGDVREEGDWAR 67
Query: 200 ---------------LNNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTKLVLP 243
+NN GV P+ + T + W ++ N L + +P
Sbjct: 68 AVAAMEEAFGELSALVNNAGVGVMKPV---HELTLEE--WRLVLDTNLTGAFLGIRHAVP 122
Query: 244 RMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYPGL 303
+ + G IVN+GSL+ + P Y A+K + + + +L E N++V + PG
Sbjct: 123 ALLRRGGGTIVNVGSLAGKNPFKGGAAYNASKFGLLGLAGAAMLDLREANVRVVNVLPGS 182
Query: 304 VDTNMTKDNSLTAKNIPLS 322
VDT + + L
Sbjct: 183 VDTGFA--GNTPGQAWKLK 199
Score = 91.4 bits (228), Expect = 8e-22
Identities = 34/160 (21%), Positives = 62/160 (38%), Gaps = 14/160 (8%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
++TG++ GIG+A A L + + L++R ++L A E+ + D E
Sbjct: 9 LITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAELE-----GALPLPGDVREEG 63
Query: 62 QVYAHIEK---ELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMT 118
+ ++ LVNN G+ P +++ E + N
Sbjct: 64 DWARAVAAMEEAFGELSA--LVNNAGVGVMKP----VHELTLEEWRLVLDTNLTGAFLGI 117
Query: 119 RMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFV 158
R +P + +R G IV VGS+ Y+ +K +
Sbjct: 118 RHAVPALLRRGGGTIVNVGSLAGKNPFKGGAAYNASKFGL 157
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural
genomics, structural genomics consortium,
oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP:
c.2.1.2
Length = 279
Score = 105 bits (265), Expect = 1e-26
Identities = 43/165 (26%), Positives = 71/165 (43%), Gaps = 14/165 (8%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQ-YDVEVKIIQADFSEG 60
+VTG++ GIG A A L ++ + +V +RT+ + + A E + Y + + D S
Sbjct: 36 LVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNE 95
Query: 61 LQV---YAHIEKELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQM 117
+ ++ I + +D+ +NN G+A P S + VN A S
Sbjct: 96 EDILSMFSAIRSQHSGVDI--CINNAGLARPDT----LLSGSTSGWKDMFNVNVLALSIC 149
Query: 118 TRMLLPHMKQRK--RGMIVFVGSIV--QVFKSPYFVNYSGTKAFV 158
TR MK+R G I+ + S+ +V YS TK V
Sbjct: 150 TREAYQSMKERNVDDGHIININSMSGHRVLPLSVTHFYSATKYAV 194
Score = 87.7 bits (218), Expect = 5e-20
Identities = 44/220 (20%), Positives = 86/220 (39%), Gaps = 57/220 (25%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYI------------------ 199
++TG++ GIG A A L ++ + +V +R++ ++ A
Sbjct: 35 ALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSN 94
Query: 200 ---------------------LNNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALM 237
+NN G+ PD + + S W ++ +N A ++
Sbjct: 95 EEDILSMFSAIRSQHSGVDICINNAGLARPDTL---LSGSTSG--WKDMFNVNVLALSIC 149
Query: 238 TKLVLPRMKLKR---RGIIVNMGSLSSRK--PHPFLTNYAATKAYMELFSKSLQAELYE- 291
T+ MK +R G I+N+ S+S + P Y+ATK + ++ L+ EL E
Sbjct: 150 TREAYQSMK-ERNVDDGHIININSMSGHRVLPLSVTHFYSATKYAVTALTEGLRQELREA 208
Query: 292 -YNIQVQYLYPGLVDTNM----TKDNSLTAKNIPLSIQPI 326
+I+ + PG+V+T + A ++ +
Sbjct: 209 QTHIRATCISPGVVETQFAFKLHDKDPEKAAATYEQMKCL 248
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein,
unknown function, structural genomics, MCSG, protein
structure initiative; 2.00A {Saccharomyces cerevisiae}
Length = 254
Score = 103 bits (260), Expect = 5e-26
Identities = 44/218 (20%), Positives = 79/218 (36%), Gaps = 49/218 (22%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLI--SRSMEKLKNTAEYI---------------- 199
+++TG + GIGK+ L + V+ +RS LK E
Sbjct: 5 ILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYGDRFFYVVGDITEDSV 64
Query: 200 ------------------LNNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTKL 240
+ N GV+ P + + W ++ IN + + +
Sbjct: 65 LKQLVNAAVKGHGKIDSLVANAGVLEPVQNVN--EIDVNA--WKKLYDINFFSIVSLVGI 120
Query: 241 VLPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLY 300
LP +K K G +V + S + Y ++KA + F+ +L E E ++ +
Sbjct: 121 ALPELK-KTNGNVVFVSSDACNMYFSSWGAYGSSKAALNHFAMTLANE--ERQVKAIAVA 177
Query: 301 PGLVDTNMTKD-----NSLTAKNIPLSIQPILYPNARL 333
PG+VDT+M + + L + L N +L
Sbjct: 178 PGIVDTDMQVNIRENVGPSSMSAEQLKMFRGLKENNQL 215
Score = 90.4 bits (225), Expect = 3e-21
Identities = 33/161 (20%), Positives = 65/161 (40%), Gaps = 11/161 (6%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLI--SRTLQKLNDTANEIRKQYDVEVKIIQADFSE 59
+VTG + GIGK+ L D V+ +R+ L +++++Y + D +E
Sbjct: 6 LVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPL----KKLKEKYGDRFFYVVGDITE 61
Query: 60 GLQVYAHIEKELQDM-DVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMT 118
+ + ++ + LV N G+ P + ++I +N + +
Sbjct: 62 DSVLKQLVNAAVKGHGKIDSLVANAGVLEP---VQNVNEIDVNAWKKLYDINFFSIVSLV 118
Query: 119 RMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVV 159
+ LP +K+ G +VFV S + Y +KA +
Sbjct: 119 GIALPELKKTN-GNVVFVSSDACNMYFSSWGAYGSSKAALN 158
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 103 bits (260), Expect = 5e-26
Identities = 53/208 (25%), Positives = 84/208 (40%), Gaps = 47/208 (22%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYI------------------ 199
V+TG++ GIG A A +L +VL +R +EKL+ I
Sbjct: 32 AVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSD 91
Query: 200 -------------------LNNVGVVSPD-PIFRSFDATPSDQIWNEII-INAGATALMT 238
+NN GV P+ P++ W+ +I +N A L+
Sbjct: 92 AIAAFATGVLAAHGRCDVLVNNAGVGWFGGPLHT---MKPAE--WDALIAVNLKAPYLLL 146
Query: 239 KLVLPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQY 298
+ P M +RG I+N+ SL+ + P Y A+K + S EL ++ ++V
Sbjct: 147 RAFAPAMIAAKRGHIINISSLAGKNPVADGAAYTASKWGLNGLMTSAAEELRQHQVRVSL 206
Query: 299 LYPGLVDTNMTKDNSLTAKNIPLS-IQP 325
+ PG V T L+AK L I+P
Sbjct: 207 VAPGSVRTEFGV--GLSAKKSALGAIEP 232
Score = 93.4 bits (233), Expect = 4e-22
Identities = 46/183 (25%), Positives = 70/183 (38%), Gaps = 21/183 (11%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
VVTG++ GIG A A +L +VL +R ++KL EI E + D S
Sbjct: 33 VVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAA-GGEAESHACDLSHSD 91
Query: 62 QVYAHIEKELQDM-DVGILVNNVGIAPPHPTFRK-----FDDISKEHLYNEITVNTGAPS 115
+ A L +LVNN G+ +D + I VN AP
Sbjct: 92 AIAAFATGVLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDAL--------IAVNLKAPY 143
Query: 116 QMTRMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQL 175
+ R P M KRG I+ + S+ Y+ +K + G+ + A +L
Sbjct: 144 LLLRAFAPAMIAAKRGHIINISSLAGKNPVADGAAYTASKWGLN------GLMTSAAEEL 197
Query: 176 AKR 178
+
Sbjct: 198 RQH 200
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet
of seven strands in the order 3214567; HET: NDP; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 280
Score = 103 bits (259), Expect = 9e-26
Identities = 53/183 (28%), Positives = 88/183 (48%), Gaps = 15/183 (8%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQ--YDVEVKIIQADFSE 59
++TGS++GIG+ AI A+ ++ + R+ ++L +T I K + +V + AD +
Sbjct: 10 IITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTT 69
Query: 60 GLQVYAHIEKELQD---MDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQ 116
I L+ +D +LVNN G A P D + + + +N A +
Sbjct: 70 EDGQDQIINSTLKQFGKID--VLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIE 127
Query: 117 MTRMLLPHMKQRKRGMIVFVGSIVQVFKS-PYFVNYSGTKAFVVLTGSTDGIGKAYAIQL 175
MT+ + PH+ K G IV V SIV ++ P F+ Y+ KA + D ++ AI L
Sbjct: 128 MTKKVKPHLVASK-GEIVNVSSIVAGPQAQPDFLYYAIAKAAL------DQYTRSTAIDL 180
Query: 176 AKR 178
AK
Sbjct: 181 AKF 183
Score = 101 bits (254), Expect = 5e-25
Identities = 50/202 (24%), Positives = 87/202 (43%), Gaps = 44/202 (21%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYIL----------------- 200
V++TGS++GIG+ AI A+ N+ + RS E+L+ T + IL
Sbjct: 9 VIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVT 68
Query: 201 -----------------------NNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATAL 236
NN G PD + D +++ + +N A
Sbjct: 69 TEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDI-YHKTLKLNLQAVIE 127
Query: 237 MTKLVLPRMKLKRRGIIVNMGSLSS-RKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQ 295
MTK V P + +G IVN+ S+ + + P YA KA ++ +++S +L ++ I+
Sbjct: 128 MTKKVKPHLV-ASKGEIVNVSSIVAGPQAQPDFLYYAIAKAALDQYTRSTAIDLAKFGIR 186
Query: 296 VQYLYPGLVDTNMTKDNSLTAK 317
V + PG+V+T T + +
Sbjct: 187 VNSVSPGMVETGFTNAMGMPDQ 208
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
2q45_A
Length = 266
Score = 102 bits (257), Expect = 2e-25
Identities = 37/199 (18%), Positives = 66/199 (33%), Gaps = 46/199 (23%)
Query: 152 SGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEY------------- 198
V TG T GIG A + A + +R+ +L
Sbjct: 13 KAKTVLV--TGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVC 70
Query: 199 ------------------------IL-NNVGVVSPDPIFRSFDATPSDQIWNEII-INAG 232
IL NN+G + P T D ++ I N
Sbjct: 71 DASLRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLD---YTAED--FSFHISTNLE 125
Query: 233 ATALMTKLVLPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEY 292
+ +++L P +K G I+ M S++ + Y+ATK + +++L E
Sbjct: 126 SAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSASVGSIYSATKGALNQLARNLACEWASD 185
Query: 293 NIQVQYLYPGLVDTNMTKD 311
I+ + P ++ T + +
Sbjct: 186 GIRANAVAPAVIATPLAEA 204
Score = 102 bits (257), Expect = 2e-25
Identities = 41/183 (22%), Positives = 71/183 (38%), Gaps = 21/183 (11%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+VTG T GIG A E A + +R +LN+ ++ +K+ +V D S
Sbjct: 18 LVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKK-GFQVTGSVCDASLRP 76
Query: 62 QVYAHIEKELQDMD--VGILVNNVGIAPPHPTFR----KFDDISKEHLYNEITVNTGAPS 115
+ ++ + IL+NN+G PT F I+ N +
Sbjct: 77 EREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFH--------ISTNLESAY 128
Query: 116 QMTRMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQL 175
++++ P +K G I+F+ SI V + YS TK + + + A +
Sbjct: 129 HLSQLAHPLLKASGCGNIIFMSSIAGVVSASVGSIYSATKGALN------QLARNLACEW 182
Query: 176 AKR 178
A
Sbjct: 183 ASD 185
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A
{Chlorobium tepidum} SCOP: c.2.1.2
Length = 244
Score = 101 bits (255), Expect = 2e-25
Identities = 38/213 (17%), Positives = 78/213 (36%), Gaps = 52/213 (24%)
Query: 158 VVLTGSTDGIGKAYAIQLAKR-------KMNLVLISRSMEKLKNTAEYI----------- 199
+++TG+ GIG+A A++ A+ + LVL SR+ L+ +
Sbjct: 5 LLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTIT 64
Query: 200 --------------------------LNNVGVVSPDPIFRSFDATPSDQIWNEII-INAG 232
+NN GV + T D ++ + N
Sbjct: 65 ADISDMADVRRLTTHIVERYGHIDCLVNNAGVGRFGALSD---LTEED--FDYTMNTNLK 119
Query: 233 ATALMTKLVLPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEY 292
T +T+ + M+ + G I + S+++ K + Y +K ++++ +
Sbjct: 120 GTFFLTQALFALMERQHSGHIFFITSVAATKAFRHSSIYCMSKFGQRGLVETMRLYARKC 179
Query: 293 NIQVQYLYPGLVDTNMTKDNSLTAKNIPLSIQP 325
N+++ + PG V T M + + L + P
Sbjct: 180 NVRITDVQPGAVYTPMW--GKVDDEMQALMMMP 210
Score = 96.1 bits (240), Expect = 3e-23
Identities = 45/187 (24%), Positives = 74/187 (39%), Gaps = 23/187 (12%)
Query: 2 VVTGSTDGIGKAYAIELAKR-------KMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQ 54
++TG+ GIG+A A+E A+ + LVL SRT L + E R + I
Sbjct: 6 LITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAE-GALTDTIT 64
Query: 55 ADFSEGLQVYA---HIEKELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNT 111
AD S+ V HI + +D LVNN G+ D+++E + N
Sbjct: 65 ADISDMADVRRLTTHIVERYGHID--CLVNNAGVGRFGA----LSDLTEEDFDYTMNTNL 118
Query: 112 GAPSQMTRMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAY 171
+T+ L M+++ G I F+ S+ + Y +K G+ +
Sbjct: 119 KGTFFLTQALFALMERQHSGHIFFITSVAATKAFRHSSIYCMSKFGQR------GLVETM 172
Query: 172 AIQLAKR 178
+ K
Sbjct: 173 RLYARKC 179
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta,
oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB:
3o4r_A*
Length = 260
Score = 102 bits (256), Expect = 2e-25
Identities = 52/211 (24%), Positives = 94/211 (44%), Gaps = 53/211 (25%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYI------------------ 199
++T STDGIG A A +LA+ ++V+ SR E + T +
Sbjct: 17 ALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAE 76
Query: 200 -------------------LNNVGVVSPD--PIFRSFDATPSDQIWNEII-INAGATALM 237
++N V +P I + ++++W++I+ +N AT LM
Sbjct: 77 DRERLVAMAVNLHGGVDILVSNAAV-NPFFGNIIDA-----TEEVWDKILHVNVKATVLM 130
Query: 238 TKLVLPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQ 297
TK V+P M+ + G ++ + S+ + P P L Y +K + +K+L EL NI+V
Sbjct: 131 TKAVVPEMEKRGGGSVLIVSSVGAYHPFPNLGPYNVSKTALLGLTKNLAVELAPRNIRVN 190
Query: 298 YLYPGLVDTNMTKDNSLT-------AKNIPL 321
L PGL+ TN ++ + +++ +
Sbjct: 191 CLAPGLIKTNFSQVLWMDKARKEYMKESLRI 221
Score = 101 bits (253), Expect = 5e-25
Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 21/183 (11%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+VT STDGIG A A LA+ +V+ SR + ++ T ++ + + V +
Sbjct: 18 LVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGE-GLSVTGTVCHVGKAE 76
Query: 62 QVYAHIEKELQDM-DVGILVNNVGIAPPHPTFRK-----FDDISKEHLYNEITVNTGAPS 115
+ + V ILV+N + P +D I + VN A
Sbjct: 77 DRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKI--------LHVNVKATV 128
Query: 116 QMTRMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQL 175
MT+ ++P M++R G ++ V S+ P Y+ +K ++ G+ K A++L
Sbjct: 129 LMTKAVVPEMEKRGGGSVLIVSSVGAYHPFPNLGPYNVSKTALL------GLTKNLAVEL 182
Query: 176 AKR 178
A R
Sbjct: 183 APR 185
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 101 bits (254), Expect = 3e-25
Identities = 42/208 (20%), Positives = 76/208 (36%), Gaps = 45/208 (21%)
Query: 152 SGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEY------------- 198
+G + V TG+ GIG+ L +V +SR+ L +
Sbjct: 6 AGRRVLV--TGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVCVDLGD 63
Query: 199 ---------------IL-NNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTKLV 241
+L NN V P + T ++ +N A ++++V
Sbjct: 64 WEATERALGSVGPVDLLVNNAAVALLQPF---LEVTKEA--FDRSFEVNLRAVIQVSQIV 118
Query: 242 LPRM-KLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLY 300
+ G IVN+ S S++ + Y +TK +++ +K + EL + I+V +
Sbjct: 119 ARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVMALELGPHKIRVNAVN 178
Query: 301 PGLVDTNMTKD-------NSLTAKNIPL 321
P +V T+M + IPL
Sbjct: 179 PTVVMTSMGQATWSDPHKAKTMLNRIPL 206
Score = 91.8 bits (229), Expect = 8e-22
Identities = 40/178 (22%), Positives = 68/178 (38%), Gaps = 19/178 (10%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+VTG+ GIG+ L +V +SRT L+ E ++ + D +
Sbjct: 11 LVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPG-----IEPVCVDLGDWE 65
Query: 62 QVYAHIEKELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMTRML 121
+ + +D +LVNN +A P F +++KE VN A Q+++++
Sbjct: 66 ATERALG-SVGPVD--LLVNNAAVALLQP----FLEVTKEAFDRSFEVNLRAVIQVSQIV 118
Query: 122 LPHMKQRKR-GMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQLAKR 178
+ R G IV V S Y TK + + K A++L
Sbjct: 119 ARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALD------MLTKVMALELGPH 170
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET:
NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 101 bits (254), Expect = 3e-25
Identities = 46/208 (22%), Positives = 81/208 (38%), Gaps = 45/208 (21%)
Query: 152 SGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEY------------- 198
SG +A V TG+ GIG+ L +V ++R+ L + A+
Sbjct: 6 SGLRALV--TGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGD 63
Query: 199 ---------------IL-NNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTKLV 241
+L NN +V P + T ++ +N + ++++V
Sbjct: 64 WDATEKALGGIGPVDLLVNNAALVIMQPF---LEVTKEA--FDRSFSVNLRSVFQVSQMV 118
Query: 242 LPRM-KLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLY 300
M G IVN+ S+ + P L Y++TK M + +K++ EL + I+V +
Sbjct: 119 ARDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVN 178
Query: 301 PGLVDTNMTKD-------NSLTAKNIPL 321
P +V T+M K + PL
Sbjct: 179 PTVVLTDMGKKVSADPEFARKLKERHPL 206
Score = 91.8 bits (229), Expect = 9e-22
Identities = 45/179 (25%), Positives = 75/179 (41%), Gaps = 21/179 (11%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+VTG+ GIG+ L +V ++RT L A E ++ + D +
Sbjct: 11 LVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPG-----IEPVCVDLGDWD 65
Query: 62 QVYAHIEKELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMTRML 121
+ + +D +LVNN + P F +++KE +VN + Q+++M+
Sbjct: 66 ATEKALG-GIGPVD--LLVNNAALVIMQP----FLEVTKEAFDRSFSVNLRSVFQVSQMV 118
Query: 122 LPHM-KQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVV-LTGSTDGIGKAYAIQLAKR 178
M + G IV V S+V P + YS TK + LT KA A++L
Sbjct: 119 ARDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGAMTMLT-------KAMAMELGPH 170
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4;
1.60A {Thermococcus sibiricus}
Length = 235
Score = 101 bits (253), Expect = 3e-25
Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 12/161 (7%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
V+TG++ GIG+A A LA+ L L +R++ +L A+E+ ++ VEV D S+
Sbjct: 6 VITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAE 65
Query: 62 QVYA---HIEKELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMT 118
V + + D+DV +V N G+ +++S+E + I VN +
Sbjct: 66 SVEEFSKKVLERFGDVDV--VVANAGLGYFKR----LEELSEEEFHEMIEVNLLGVWRTL 119
Query: 119 RMLLPHMKQRKRGMIVFVGSIV-QVFKSPYFVNYSGTKAFV 158
+ L +K+ +V + ++ PY Y TK
Sbjct: 120 KAFLDSLKRTGGLALVTTSDVSARLI--PYGGGYVSTKWAA 158
Score = 92.2 bits (230), Expect = 5e-22
Identities = 38/191 (19%), Positives = 70/191 (36%), Gaps = 47/191 (24%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYI------------------ 199
V+TG++ GIG+A A LA+ L L +RS+++L+ A +
Sbjct: 5 AVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKA 64
Query: 200 --------------------LNNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMT 238
+ N G+ + + + + ++E+I +N
Sbjct: 65 ESVEEFSKKVLERFGDVDVVVANAGLGYFKRL---EELSEEE--FHEMIEVNLLGVWRTL 119
Query: 239 KLVLPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQY 298
K L +K +V + S + P+ Y +TK ++ Q E +++
Sbjct: 120 KAFLDSLKRTGGLALVTTSDV-SARLIPYGGGYVSTKWAARALVRTFQIE--NPDVRFFE 176
Query: 299 LYPGLVDTNMT 309
L PG VDT
Sbjct: 177 LRPGAVDTYFG 187
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics
center for infectious DI dehydrogenase, oxidoreductase;
HET: 1PE; 1.85A {Mycobacterium smegmatis}
Length = 264
Score = 101 bits (253), Expect = 4e-25
Identities = 36/179 (20%), Positives = 81/179 (45%), Gaps = 12/179 (6%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
V++G +G A A++ DLVL +RT+++L D A ++ + D ++
Sbjct: 15 VISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDT-GRRALSVGTDITDDA 73
Query: 62 QVYAHIEKELQDM-DVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMTRM 120
QV +++ ++ V +++NN P + F + + EH+ + I + ++ +
Sbjct: 74 QVAHLVDETMKAYGRVDVVINNAFRVPS---MKPFANTTFEHMRDAIELTVFGALRLIQG 130
Query: 121 LLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQLAKRK 179
P +++ K G +V V S+V + Y K+ ++ + + A +L ++
Sbjct: 131 FTPALEESK-GAVVNVNSMVVRHSQAKYGAYKMAKSALL------AMSQTLATELGEKG 182
Score = 99 bits (250), Expect = 2e-24
Identities = 36/193 (18%), Positives = 73/193 (37%), Gaps = 45/193 (23%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYI------------------ 199
VV++G +G A + A++ +LVL +R++E+L++ A+ +
Sbjct: 14 VVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDA 73
Query: 200 -------------------LNNVGVVSPD-PIFRSFDATPSDQIWNEII-INAGATALMT 238
+NN V P + + + + I + +
Sbjct: 74 QVAHLVDETMKAYGRVDVVINNAFRVPSMKPFANT-----TFEHMRDAIELTVFGALRLI 128
Query: 239 KLVLPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQY 298
+ P ++ + +G +VN+ S+ R Y K+ + S++L EL E I+V
Sbjct: 129 QGFTPALE-ESKGAVVNVNSMVVRHSQAKYGAYKMAKSALLAMSQTLATELGEKGIRVNS 187
Query: 299 LYPGLVDTNMTKD 311
+ PG + K
Sbjct: 188 VLPGYIWGGTLKS 200
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 100 bits (251), Expect = 9e-25
Identities = 35/200 (17%), Positives = 70/200 (35%), Gaps = 47/200 (23%)
Query: 152 SGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYIL----------- 200
S A V TG + GIG A L + + +R E+L+ +
Sbjct: 7 SEAVAVV--TGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFAS 64
Query: 201 ----------------------------NNVGVVSPDPIFRSFDATPSDQIWNEII-INA 231
NN G + +D+ W+E + +
Sbjct: 65 VCDVLDALQVRAFAEACERTLGCASILVNNAGQGRVSTFAET-----TDEAWSEELQLKF 119
Query: 232 GATALMTKLVLPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYE 291
+ + LP+++ + IV + SL + +P P + +A +A ++ +S+ E
Sbjct: 120 FSVIHPVRAFLPQLESRADAAIVCVNSLLASQPEPHMVATSAARAGVKNLVRSMAFEFAP 179
Query: 292 YNIQVQYLYPGLVDTNMTKD 311
++V + GLV++ +
Sbjct: 180 KGVRVNGILIGLVESGQWRR 199
Score = 99.6 bits (249), Expect = 2e-24
Identities = 43/180 (23%), Positives = 73/180 (40%), Gaps = 14/180 (7%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYD-VEVKIIQADFSEG 60
VVTG + GIG A L + + +R ++L + +R+++ + D +
Sbjct: 12 VVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDA 71
Query: 61 LQVYAHIEKELQDM-DVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMTR 119
LQV A E + + ILVNN G F + + E E+ + + R
Sbjct: 72 LQVRAFAEACERTLGCASILVNNAGQGRVST----FAETTDEAWSEELQLKFFSVIHPVR 127
Query: 120 MLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVV-LTGSTDGIGKAYAIQLAKR 178
LP ++ R IV V S++ P+ V S +A V L ++ A + A +
Sbjct: 128 AFLPQLESRADAAIVCVNSLLASQPEPHMVATSAARAGVKNLV-------RSMAFEFAPK 180
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain
dehydrogenase, ketone BODY, beta hydroxybutyrate,
oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi}
SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A*
2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Length = 260
Score = 100 bits (250), Expect = 1e-24
Identities = 54/183 (29%), Positives = 78/183 (42%), Gaps = 20/183 (10%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLIS-RTLQKLNDTANEIRKQYDVEVKIIQADFSEG 60
VVTGST GIG A LA + D+VL ++ + Q+ V+V AD S+G
Sbjct: 8 VVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKG 67
Query: 61 LQVYAHIEKELQDM-DVGILVNNVGIAPPHPTFR----KFDDISKEHLYNEITVNTGAPS 115
V ++ ++ M + ILVNN GI K+D I + +N A
Sbjct: 68 EAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAI--------LALNLSAVF 119
Query: 116 QMTRMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQL 175
T LPHMK++ G I+ + S + S Y K VV G K A++
Sbjct: 120 HGTAAALPHMKKQGFGRIINIASAHGLVASANKSAYVAAKHGVV------GFTKVTALET 173
Query: 176 AKR 178
A +
Sbjct: 174 AGQ 176
Score = 88.1 bits (219), Expect = 3e-20
Identities = 41/193 (21%), Positives = 63/193 (32%), Gaps = 37/193 (19%)
Query: 152 SGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLIS-RSMEKLKNTAEYILNNVG------ 204
G A V TGST GIG A LA + ++VL +++ + G
Sbjct: 3 KGKVAVV--TGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYD 60
Query: 205 ---VVSPDPIFRSFDATP------------------------SDQIWNEII-INAGATAL 236
+ + + D + W+ I+ +N A
Sbjct: 61 GADLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFH 120
Query: 237 MTKLVLPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQV 296
T LP MK + G I+N+ S + Y A K + F+K E I
Sbjct: 121 GTAAALPHMKKQGFGRIINIASAHGLVASANKSAYVAAKHGVVGFTKVTALETAGQGITA 180
Query: 297 QYLYPGLVDTNMT 309
+ PG V T +
Sbjct: 181 NAICPGWVRTPLV 193
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Length = 281
Score = 99.6 bits (249), Expect = 2e-24
Identities = 45/183 (24%), Positives = 75/183 (40%), Gaps = 20/183 (10%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTL-QKLNDTANEIRKQYDVEVKIIQADFSEG 60
V+TGST GIG A A LAK ++VL ++ +E+ V AD ++
Sbjct: 29 VITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKP 88
Query: 61 LQVYAHIEKELQDM-DVGILVNNVGIAPPHPTFR----KFDDISKEHLYNEITVNTGAPS 115
++ + ILVNN G+ ++D I I VN +
Sbjct: 89 SEIADMMAMVADRFGGADILVNNAGVQFVEKIEDFPVEQWDRI--------IAVNLSSSF 140
Query: 116 QMTRMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQL 175
R +P MK++ G I+ + S + SP+ Y K ++ G+ K A+++
Sbjct: 141 HTIRGAIPPMKKKGWGRIINIASAHGLVASPFKSAYVAAKHGIM------GLTKTVALEV 194
Query: 176 AKR 178
A+
Sbjct: 195 AES 197
Score = 86.2 bits (214), Expect = 1e-19
Identities = 51/198 (25%), Positives = 73/198 (36%), Gaps = 47/198 (23%)
Query: 152 SGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNT------------AEY- 198
A + TGST GIG A A LAK N+VL T +
Sbjct: 24 MTKTAVI--TGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHH 81
Query: 199 -------------------------IL-NNVGVVSPDPIFRSFDATPSDQIWNEII-INA 231
IL NN GV + I P +Q W+ II +N
Sbjct: 82 PADMTKPSEIADMMAMVADRFGGADILVNNAGVQFVEKIED----FPVEQ-WDRIIAVNL 136
Query: 232 GATALMTKLVLPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYE 291
++ + +P MK K G I+N+ S PF + Y A K + +K++ E+ E
Sbjct: 137 SSSFHTIRGAIPPMKKKGWGRIINIASAHGLVASPFKSAYVAAKHGIMGLTKTVALEVAE 196
Query: 292 YNIQVQYLYPGLVDTNMT 309
+ V + PG V T +
Sbjct: 197 SGVTVNSICPGYVLTPLV 214
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 99.1 bits (248), Expect = 3e-24
Identities = 41/192 (21%), Positives = 79/192 (41%), Gaps = 44/192 (22%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYI------------------ 199
++TG+ GIGK AI A ++V+ + + + + I
Sbjct: 14 AIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQ 73
Query: 200 -------------------LNNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTK 239
+NN G P P FD +D + +N + +++
Sbjct: 74 ELSALADFAISKLGKVDILVNNAGGGGPKP----FDMPMAD--FRRAYELNVFSFFHLSQ 127
Query: 240 LVLPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYL 299
LV P M+ G+I+ + S+++ + +T+YA++KA +++ +L E NI+V +
Sbjct: 128 LVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGI 187
Query: 300 YPGLVDTNMTKD 311
PG + T+ K
Sbjct: 188 APGAILTDALKS 199
Score = 96.0 bits (240), Expect = 3e-23
Identities = 37/181 (20%), Positives = 74/181 (40%), Gaps = 19/181 (10%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
++TG+ GIGK AI A +V+ N +EI++ + + D +
Sbjct: 15 IITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL-GGQAFACRCDITSEQ 73
Query: 62 QVYAHIEKELQDM-DVGILVNNVGIAPPHP---TFRKFDDISKEHLYNEITVNTGAPSQM 117
++ A + + + V ILVNN G P P F +N + +
Sbjct: 74 ELSALADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRA--------YELNVFSFFHL 125
Query: 118 TRMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQLAK 177
++++ P M++ G+I+ + S+ K+ +Y+ +KA + + A L +
Sbjct: 126 SQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAAS------HLVRNMAFDLGE 179
Query: 178 R 178
+
Sbjct: 180 K 180
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate
5-dehydratase, NAD(P) dependent, enzyme initiative, EFI,
oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae}
Length = 273
Score = 99.2 bits (248), Expect = 4e-24
Identities = 47/178 (26%), Positives = 74/178 (41%), Gaps = 14/178 (7%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
VVTG+ GIG+A A A+ ++ RT + + A+EI + + AD ++
Sbjct: 35 VVTGAGSGIGRAIAHGYARAGAHVLAWGRT-DGVKEVADEIADG-GGSAEAVVADLADLE 92
Query: 62 QVYAHIEKELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMTRML 121
E+ V +LVNN GI P +++S +TVN A ++R
Sbjct: 93 GAANVAEELAATRRVDVLVNNAGIIARAP----AEEVSLGRWREVLTVNLDAAWVLSRSF 148
Query: 122 LPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVV-LTGSTDGIGKAYAIQLAKR 178
M G IV + S++ Y+ +K VV LT +A A + A R
Sbjct: 149 GTAMLAHGSGRIVTIASMLSFQGGRNVAAYAASKHAVVGLT-------RALASEWAGR 199
Score = 89.5 bits (223), Expect = 9e-21
Identities = 43/197 (21%), Positives = 76/197 (38%), Gaps = 45/197 (22%)
Query: 152 SGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYI------------ 199
+G A V TG+ GIG+A A A+ +++ R+ + +K A+ I
Sbjct: 30 AGRTAVV--TGAGSGIGRAIAHGYARAGAHVLAWGRT-DGVKEVADEIADGGGSAEAVVA 86
Query: 200 ------------------------LNNVGVVSPDPIFRSFDATPSDQIWNEII-INAGAT 234
+NN G+++ P S W E++ +N A
Sbjct: 87 DLADLEGAANVAEELAATRRVDVLVNNAGIIARAPAEEV-----SLGRWREVLTVNLDAA 141
Query: 235 ALMTKLVLPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNI 294
++++ M G IV + S+ S + + YAA+K + +++L +E +
Sbjct: 142 WVLSRSFGTAMLAHGSGRIVTIASMLSFQGGRNVAAYAASKHAVVGLTRALASEWAGRGV 201
Query: 295 QVQYLYPGLVDTNMTKD 311
V L PG V T T
Sbjct: 202 GVNALAPGYVVTANTAA 218
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 98.8 bits (247), Expect = 4e-24
Identities = 45/191 (23%), Positives = 72/191 (37%), Gaps = 41/191 (21%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYI------------------ 199
++TG+ G+G+A A+ LA + L R ++ L+ TA I
Sbjct: 31 AIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIGDDALCVPTDVTDPDSVR 90
Query: 200 ----------------LNNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTKLVL 242
NN G +P + Q W +++ N L T+
Sbjct: 91 ALFTATVEKFGRVDVLFNNAGTGAP---AIPMEDLTFAQ-WKQVVDTNLTGPFLCTQEAF 146
Query: 243 PRMKL--KRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLY 300
MK R G I+N GS+S+ P P+ Y ATK + +KS + ++I +
Sbjct: 147 RVMKAQEPRGGRIINNGSISATSPRPYSAPYTATKHAITGLTKSTSLDGRVHDIACGQID 206
Query: 301 PGLVDTNMTKD 311
G DT M +
Sbjct: 207 IGNADTPMAQK 217
Score = 82.7 bits (205), Expect = 2e-18
Identities = 44/180 (24%), Positives = 72/180 (40%), Gaps = 16/180 (8%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+VTG+ G+G+A A+ LA + L R L L +TA EI + + D ++
Sbjct: 32 IVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIG----DDALCVPTDVTDPD 87
Query: 62 QVYAHIEKELQDM-DVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMTRM 120
V A ++ V +L NN G P +D++ + N P T+
Sbjct: 88 SVRALFTATVEKFGRVDVLFNNAGTGAP---AIPMEDLTFAQWKQVVDTNLTGPFLCTQE 144
Query: 121 LLPHMKQRKR--GMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQLAKR 178
MK ++ G I+ GSI PY Y+ TK + G+ K+ ++
Sbjct: 145 AFRVMKAQEPRGGRIINNGSISATSPRPYSAPYTATKHAIT------GLTKSTSLDGRVH 198
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of
seven strands in the order 3214567; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 278
Score = 98.8 bits (247), Expect = 5e-24
Identities = 48/184 (26%), Positives = 79/184 (42%), Gaps = 15/184 (8%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQ--YDVEVKIIQADFSE 59
++TGS++GIG+A A+ A+ + + R ++L +T +I + V + AD +
Sbjct: 10 IITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTT 69
Query: 60 GLQVYAHIEKELQD---MDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQ 116
+ L +D ILVNN G A P + S E + +N +
Sbjct: 70 DAGQDEILSTTLGKFGKLD--ILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIA 127
Query: 117 MTRMLLPHMKQRKRGMIVFVGSIVQVFKS-PYFVNYSGTKAFVVLTGSTDGIGKAYAIQL 175
+T+ +PH+ K G IV + SI + P F YS KA + D + AI L
Sbjct: 128 LTKKAVPHLSSTK-GEIVNISSIASGLHATPDFPYYSIAKAAI------DQYTRNTAIDL 180
Query: 176 AKRK 179
+
Sbjct: 181 IQHG 184
Score = 96.1 bits (240), Expect = 4e-23
Identities = 43/201 (21%), Positives = 83/201 (41%), Gaps = 44/201 (21%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYIL----------------- 200
++TGS++GIG+A A+ A+ + + R E+L+ T + IL
Sbjct: 9 AIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVT 68
Query: 201 -----------------------NNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATAL 236
NN G PD ++ A + ++ + +N +
Sbjct: 69 TDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIES-YDATLNLNLRSVIA 127
Query: 237 MTKLVLPRMKLKRRGIIVNMGSLSSR-KPHPFLTNYAATKAYMELFSKSLQAELYEYNIQ 295
+TK +P + +G IVN+ S++S P Y+ KA ++ ++++ +L ++ I+
Sbjct: 128 LTKKAVPHLS-STKGEIVNISSIASGLHATPDFPYYSIAKAAIDQYTRNTAIDLIQHGIR 186
Query: 296 VQYLYPGLVDTNMTKDNSLTA 316
V + PGLV T +
Sbjct: 187 VNSISPGLVATGFGSAMGMPE 207
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center
for structural genomics of infectious diseases,
oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus
anthracis str}
Length = 257
Score = 98.3 bits (246), Expect = 5e-24
Identities = 46/207 (22%), Positives = 80/207 (38%), Gaps = 43/207 (20%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYILNNVG--------VVSPD 209
V++TG + G+GK A + AK +V+ R+ EKL+ I G V + D
Sbjct: 9 VIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTD 68
Query: 210 PIFRSFDATP------------------------SDQIWNEII-INAGATALMTKLVLPR 244
I + + S WN +I I T ++ +
Sbjct: 69 DIQKMIEQIDEKFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKY 128
Query: 245 M-KLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAEL-YEYNIQVQYLYPG 302
+ +G I+NM + + P + + AA KA + +K+L E +Y I+V + PG
Sbjct: 129 WIEKGIKGNIINMVATYAWDAGPGVIHSAAAKAGVLAMTKTLAVEWGRKYGIRVNAIAPG 188
Query: 303 LVDTNMTKDNSL--------TAKNIPL 321
++ D T +++PL
Sbjct: 189 PIERTGGADKLWISEEMAKRTIQSVPL 215
Score = 91.8 bits (229), Expect = 1e-21
Identities = 34/183 (18%), Positives = 73/183 (39%), Gaps = 21/183 (11%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
++TG + G+GK A AK +V+ RT +KL + EI Q+ ++ +Q D
Sbjct: 10 IITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIE-QFPGQILTVQMDVRNTD 68
Query: 62 QVYAHIEKELQDM-DVGILVNNVGIAPPHPTFR----KFDDISKEHLYNEITVNTGAPSQ 116
+ IE+ + + IL+NN P ++ + I +
Sbjct: 69 DIQKMIEQIDEKFGRIDILINNAAGNFICPAEDLSVNGWNSV--------INIVLNGTFY 120
Query: 117 MTRMLLPHM-KQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQL 175
++ + + ++ +G I+ + + P ++ + KA V + K A++
Sbjct: 121 CSQAIGKYWIEKGIKGNIINMVATYAWDAGPGVIHSAAAKAGV------LAMTKTLAVEW 174
Query: 176 AKR 178
++
Sbjct: 175 GRK 177
>4e4y_A Short chain dehydrogenase family protein; structural genomics, the
center for structural genomics of I diseases, csgid,
niaid; 1.80A {Francisella tularensis subsp}
Length = 244
Score = 98.0 bits (245), Expect = 5e-24
Identities = 37/189 (19%), Positives = 69/189 (36%), Gaps = 36/189 (19%)
Query: 150 NYSGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLK---------------- 193
+ + V TG + GIGKA L + K + V+ +
Sbjct: 1 SNAMANYLV--TGGSKGIGKAVVELLLQNKNHTVINIDIQQSFSAENLKFIKADLTKQQD 58
Query: 194 -----NTAEY----IL-NNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTKLVL 242
+ + + N G++ IF + +++ +N ++ K +
Sbjct: 59 ITNVLDIIKNVSFDGIFLNAGILIKGSIFDI-----DIESIKKVLDLNVWSSIYFIKGLE 113
Query: 243 PRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYPG 302
+K IV GS P Y +K + +KSL +L +Y I+V + PG
Sbjct: 114 NNLK--VGASIVFNGSDQCFIAKPNSFAYTLSKGAIAQMTKSLALDLAKYQIRVNTVCPG 171
Query: 303 LVDTNMTKD 311
VDT++ ++
Sbjct: 172 TVDTDLYRN 180
Score = 76.8 bits (190), Expect = 2e-16
Identities = 39/179 (21%), Positives = 69/179 (38%), Gaps = 25/179 (13%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+VTG + GIGKA L + K V+ Q + +K I+AD ++
Sbjct: 8 LVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFSAEN----------LKFIKADLTKQQ 57
Query: 62 QVYAHIEKELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMTRML 121
+ ++ +++ + N GI DI E + + +N + + L
Sbjct: 58 DITNVLDII-KNVSFDGIFLNAGILIKGS----IFDIDIESIKKVLDLNVWSSIYFIKGL 112
Query: 122 LPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVV-LTGSTDGIGKAYAIQLAKRK 179
++K IVF GS P Y+ +K + +T K+ A+ LAK +
Sbjct: 113 ENNLK--VGASIVFNGSDQCFIAKPNSFAYTLSKGAIAQMT-------KSLALDLAKYQ 162
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 98.0 bits (245), Expect = 7e-24
Identities = 43/181 (23%), Positives = 78/181 (43%), Gaps = 16/181 (8%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+VTG + G+G A LA+ +V+ SR L++ ++ A ++ ++Y VE + D S
Sbjct: 25 LVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYE 84
Query: 62 QVYAHIEKELQDM-DVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMTRM 120
+V +E + + +VN GI HP ++ + I VN + R
Sbjct: 85 EVKKLLEAVKEKFGKLDTVVNAAGINRRHP----AEEFPLDEFRQVIEVNLFGTYYVCRE 140
Query: 121 LLPHMKQRKRGMIVFVGSIVQVFKS--PYFVNYSGTKAFVV-LTGSTDGIGKAYAIQLAK 177
+++ I+ +GS + V + P Y+ +K V LT KA A + +
Sbjct: 141 AFSLLRESDNPSIINIGS-LTVEEVTMPNISAYAASKGGVASLT-------KALAKEWGR 192
Query: 178 R 178
Sbjct: 193 Y 193
Score = 92.6 bits (231), Expect = 7e-22
Identities = 41/195 (21%), Positives = 76/195 (38%), Gaps = 37/195 (18%)
Query: 152 SGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYILNNVG------- 204
G A V TG + G+G A LA+ ++V+ SR++E+ A+ + G
Sbjct: 20 RGRVALV--TGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFR 77
Query: 205 --VVSPDPIFRSFDATP------------------------SDQIWNEII-INAGATALM 237
V + + + + +A + ++I +N T +
Sbjct: 78 CDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYV 137
Query: 238 TKLVLPRMKLKRRGIIVNMGS-LSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQV 296
+ ++ I+N+GS P ++ YAA+K + +K+L E Y I+V
Sbjct: 138 CREAFSLLRESDNPSIINIGSLTVEEVTMPNISAYAASKGGVASLTKALAKEWGRYGIRV 197
Query: 297 QYLYPGLVDTNMTKD 311
+ PG T MT+
Sbjct: 198 NVIAPGWYRTKMTEA 212
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.08A {Sinorhizobium meliloti}
Length = 264
Score = 98.0 bits (245), Expect = 7e-24
Identities = 43/162 (26%), Positives = 67/162 (41%), Gaps = 14/162 (8%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
++TG++ GIG+ A EL ++L +R ++ A EIR D ++
Sbjct: 8 LITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGG-TALAQVLDVTDRH 66
Query: 62 QVYAHIE---KELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMT 118
V A + +DV LVNN G+ P P + + I VN
Sbjct: 67 SVAAFAQAAVDTWGRIDV--LVNNAGVMPLSP----LAAVKVDEWERMIDVNIKGVLWGI 120
Query: 119 RMLLPHMKQRKRGMIVFVGSI--VQVFKSPYFVNYSGTKAFV 158
+LP M+ ++ G I+ +GSI + V P Y TK V
Sbjct: 121 GAVLPIMEAQRSGQIINIGSIGALSVV--PTAAVYCATKFAV 160
Score = 94.9 bits (237), Expect = 9e-23
Identities = 44/187 (23%), Positives = 74/187 (39%), Gaps = 39/187 (20%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYILNNVG--------VVSPD 209
+++TG++ GIG+ A +L ++L +R +++ A I + G V
Sbjct: 7 ILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRH 66
Query: 210 PIFRSFDATPSDQIWNEIII---NAGATAL------------------------MTKLVL 242
+ A W I + NAG L VL
Sbjct: 67 SVAAFAQAAVDT--WGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVL 124
Query: 243 PRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYPG 302
P M+ +R G I+N+GS+ + P Y ATK + S L+ E NI+V + PG
Sbjct: 125 PIMEAQRSGQIINIGSIGALSVVPTAAVYCATKFAVRAISDGLRQE--STNIRVTCVNPG 182
Query: 303 LVDTNMT 309
+V++ +
Sbjct: 183 VVESELA 189
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE
beta, structural genomics, PSI-2; 1.90A {Pseudomonas
syringae PV}
Length = 247
Score = 97.2 bits (243), Expect = 9e-24
Identities = 39/197 (19%), Positives = 71/197 (36%), Gaps = 48/197 (24%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYI------------------ 199
+++TG+ GIG A A A ++VL+ R+ L ++ I
Sbjct: 17 ILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENA 76
Query: 200 ----------------------LNNVGVVSPD-PIFRSFDATPSDQIWNEII-INAGATA 235
L+N ++ P P+ + D+ + +++ +N AT
Sbjct: 77 TAQQYRELAARVEHEFGRLDGLLHNASIIGPRTPLEQL-----PDEDFMQVMHVNVNATF 131
Query: 236 LMTKLVLPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELY-EYNI 294
++T+ +LP +K I S RK Y +K E ++L EL +
Sbjct: 132 MLTRALLPLLKRSEDASIAFTSSSVGRKGRANWGAYGVSKFATEGLMQTLADELEGVTAV 191
Query: 295 QVQYLYPGLVDTNMTKD 311
+ + PG T M
Sbjct: 192 RANSINPGATRTGMRAQ 208
Score = 94.9 bits (237), Expect = 8e-23
Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 10/160 (6%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKII-----QAD 56
+VTG+ GIG A A A +VL+ RT L + +++I+ + II A
Sbjct: 18 LVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENAT 77
Query: 57 FSEGLQVYAHIEKELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQ 116
+ ++ A +E E +D L++N I P + + E + VN A
Sbjct: 78 AQQYRELAARVEHEFGRLD--GLLHNASIIGP---RTPLEQLPDEDFMQVMHVNVNATFM 132
Query: 117 MTRMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKA 156
+TR LLP +K+ + I F S V + Y +K
Sbjct: 133 LTRALLPLLKRSEDASIAFTSSSVGRKGRANWGAYGVSKF 172
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold,
oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Length = 266
Score = 97.7 bits (244), Expect = 1e-23
Identities = 42/184 (22%), Positives = 78/184 (42%), Gaps = 37/184 (20%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEY------------------- 198
VV+TG++ GIG+A A + ++ L+L++R +E+LK
Sbjct: 19 VVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKALNLPNTLCAQVDVTDKYTFDTAI 78
Query: 199 ------------ILNNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTKLVLPRM 245
I+NN G++ I ++ W + +N + VL M
Sbjct: 79 TRAEKIYGPADAIVNNAGMMLLGQI---DTQEANE--WQRMFDVNVLGLLNGMQAVLAPM 133
Query: 246 KLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYPGLVD 305
K + G I+N+ S++ +K P Y TK + S++++ E+ N++V + P V
Sbjct: 134 KARNCGTIINISSIAGKKTFPDHAAYCGTKFAVHAISENVREEVAASNVRVMTIAPSAVK 193
Query: 306 TNMT 309
T +
Sbjct: 194 TELL 197
Score = 88.0 bits (219), Expect = 3e-20
Identities = 39/162 (24%), Positives = 60/162 (37%), Gaps = 20/162 (12%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
V+TG++ GIG+A A ++ L+L++R +++L Q D ++
Sbjct: 20 VITGASSGIGEAIARRFSEEGHPLLLLARRVERLKALNLP-------NTLCAQVDVTDKY 72
Query: 62 QVYA---HIEKELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMT 118
EK D +VNN G+ D VN
Sbjct: 73 TFDTAITRAEKIYGPADA--IVNNAGMMLLGQ----IDTQEANEWQRMFDVNVLGLLNGM 126
Query: 119 RMLLPHMKQRKRGMIVFVGSI--VQVFKSPYFVNYSGTKAFV 158
+ +L MK R G I+ + SI + F P Y GTK V
Sbjct: 127 QAVLAPMKARNCGTIINISSIAGKKTF--PDHAAYCGTKFAV 166
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A
{Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A
3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Length = 252
Score = 96.8 bits (242), Expect = 1e-23
Identities = 38/182 (20%), Positives = 76/182 (41%), Gaps = 16/182 (8%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEG- 60
+VTG++DGIG+ A+ A+ ++L+ R +KL A+ I ++ + + D
Sbjct: 16 LVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCT 75
Query: 61 ----LQVYAHIEKELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQ 116
Q+ I +D +++N G+ + + + + + VN A
Sbjct: 76 SENCQQLAQRIAVNYPRLD--GVLHNAGLLGD---VCPMSEQNPQVWQDVMQVNVNATFM 130
Query: 117 MTRMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQLA 176
+T+ LLP + + G +VF S V + Y+ +K G+ + A +
Sbjct: 131 LTQALLPLLLKSDAGSLVFTSSSVGRQGRANWGAYAASKFATE------GMMQVLADEYQ 184
Query: 177 KR 178
+R
Sbjct: 185 QR 186
Score = 96.4 bits (241), Expect = 2e-23
Identities = 44/196 (22%), Positives = 79/196 (40%), Gaps = 47/196 (23%)
Query: 158 VVL-TGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYI----------------- 199
++L TG++DGIG+ A+ A+ ++L+ R+ EKL+ A +I
Sbjct: 14 IILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLT 73
Query: 200 -----------------------LNNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATA 235
L+N G++ + Q+W +++ +N AT
Sbjct: 74 CTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQN----PQVWQDVMQVNVNATF 129
Query: 236 LMTKLVLPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQ 295
++T+ +LP + G +V S R+ YAA+K E + L E Y+ ++
Sbjct: 130 MLTQALLPLLLKSDAGSLVFTSSSVGRQGRANWGAYAASKFATEGMMQVLADE-YQQRLR 188
Query: 296 VQYLYPGLVDTNMTKD 311
V + PG T M
Sbjct: 189 VNCINPGGTRTAMRAS 204
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 96.8 bits (242), Expect = 2e-23
Identities = 45/180 (25%), Positives = 71/180 (39%), Gaps = 14/180 (7%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
++TG+T GIG A A LVL R + +L+ + +Q+ +V + D +E
Sbjct: 24 LITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPD 83
Query: 62 QVYAHIEKELQDMD-VGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMTRM 120
+ + + +LVNN GI+ P P D + I VN AP+ +
Sbjct: 84 APAELARRAAEAFGGLDVLVNNAGISHPQP----VVDTDPQLFDATIAVNLRAPALLASA 139
Query: 121 LLPHMKQRKR-GMIVFVGSIVQVFKSPYFVNYSGTKAFVV-LTGSTDGIGKAYAIQLAKR 178
+ M G I+ V S + P Y +KA +V T K A +L
Sbjct: 140 VGKAMVAAGEGGAIITVASAAALAPLPDHYAYCTSKAGLVMAT-------KVLARELGPH 192
Score = 95.3 bits (238), Expect = 7e-23
Identities = 46/200 (23%), Positives = 71/200 (35%), Gaps = 47/200 (23%)
Query: 152 SGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYIL----------- 200
G +A + TG+T GIG A A LVL R + +L +
Sbjct: 19 DGKRALI--TGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVHTVA 76
Query: 201 ---------------------------NNVGVVSPDPIFRSFDATPSDQIWNEII-INAG 232
NN G+ P P+ D P ++ I +N
Sbjct: 77 IDLAEPDAPAELARRAAEAFGGLDVLVNNAGISHPQPVV---DTDPQL--FDATIAVNLR 131
Query: 233 ATALMTKLVLPRM-KLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYE 291
A AL+ V M G I+ + S ++ P P Y +KA + + +K L EL
Sbjct: 132 APALLASAVGKAMVAAGEGGAIITVASAAALAPLPDHYAYCTSKAGLVMATKVLARELGP 191
Query: 292 YNIQVQYLYPGLVDTNMTKD 311
+ I+ + P +V T M +
Sbjct: 192 HGIRANSVCPTVVLTEMGQR 211
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 96.9 bits (242), Expect = 2e-23
Identities = 47/193 (24%), Positives = 70/193 (36%), Gaps = 39/193 (20%)
Query: 156 AFVVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYILNNVG---------VV 206
A V TG G+G+ A L+ ++V+ R + L A I G V
Sbjct: 36 ALV--TGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVG 93
Query: 207 SPDPIFRSFDATP-------------------------SDQIWNEII-INAGATALMTKL 240
PD + F A + + WN I+ N L T+
Sbjct: 94 DPDQVAALFAAVRAEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQH 153
Query: 241 VLPRMK--LKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQY 298
MK R G I+N GS+S++ P P Y ATK + +KS + ++I
Sbjct: 154 AFRMMKAQTPRGGRIINNGSISAQTPRPNSAPYTATKHAITGLTKSTALDGRMHDIACGQ 213
Query: 299 LYPGLVDTNMTKD 311
+ G T+MT
Sbjct: 214 IDIGNAATDMTAR 226
Score = 87.7 bits (218), Expect = 5e-20
Identities = 42/181 (23%), Positives = 69/181 (38%), Gaps = 14/181 (7%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+VTG G+G+ A L+ +V+ R L+ A EI + V+ + D +
Sbjct: 37 LVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPD 96
Query: 62 QVYAHIEKELQDM-DVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMTRM 120
QV A + + +LVNN G P ++++ E + N T+
Sbjct: 97 QVAALFAAVRAEFARLDLLVNNAGSNVPP---VPLEEVTFEQWNGIVAANLTGAFLCTQH 153
Query: 121 LLPHMKQR--KRGMIVFVGSIVQVFKSPYFVNYSGTKAFVV-LTGSTDGIGKAYAIQLAK 177
MK + + G I+ GSI P Y+ TK + LT K+ A+
Sbjct: 154 AFRMMKAQTPRGGRIINNGSISAQTPRPNSAPYTATKHAITGLT-------KSTALDGRM 206
Query: 178 R 178
Sbjct: 207 H 207
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 97.3 bits (243), Expect = 2e-23
Identities = 34/182 (18%), Positives = 71/182 (39%), Gaps = 20/182 (10%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+VTG++ GIG A A AK +V + ++ + + D ++
Sbjct: 38 LVTGASYGIGFAIASAYAKAGATIVFNDINQELVDRGMAAYKAA-GINAHGYVCDVTDED 96
Query: 62 QVYAHIEKELQDM-DVGILVNNVGIAPPHPTFR----KFDDISKEHLYNEITVNTGAPSQ 116
+ A + + ++ + ILVNN GI P +F + I ++ AP
Sbjct: 97 GIQAMVAQIESEVGIIDILVNNAGIIRRVPMIEMTAAQFRQV--------IDIDLNAPFI 148
Query: 117 MTRMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQLA 176
+++ ++P M ++ G I+ + S++ Y+ K + + K A +
Sbjct: 149 VSKAVIPSMIKKGHGKIINICSMMSELGRETVSAYAAAKGGLK------MLTKNIASEYG 202
Query: 177 KR 178
+
Sbjct: 203 EA 204
Score = 94.6 bits (236), Expect = 2e-22
Identities = 45/197 (22%), Positives = 77/197 (39%), Gaps = 45/197 (22%)
Query: 152 SGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYI------------ 199
G A V TG++ GIG A A AK +V + E +
Sbjct: 33 KGKIALV--TGASYGIGFAIASAYAKAGATIVFNDINQELVDRGMAAYKAAGINAHGYVC 90
Query: 200 -------------------------LNNVGVVSPDPIFRSFDATPSDQIWNEII-INAGA 233
+NN G++ P+ + + ++I I+ A
Sbjct: 91 DVTDEDGIQAMVAQIESEVGIIDILVNNAGIIRRVPMIEM-----TAAQFRQVIDIDLNA 145
Query: 234 TALMTKLVLPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYN 293
+++K V+P M K G I+N+ S+ S ++ YAA K +++ +K++ +E E N
Sbjct: 146 PFIVSKAVIPSMIKKGHGKIINICSMMSELGRETVSAYAAAKGGLKMLTKNIASEYGEAN 205
Query: 294 IQVQYLYPGLVDTNMTK 310
IQ + PG + T T
Sbjct: 206 IQCNGIGPGYIATPQTA 222
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 96.9 bits (242), Expect = 4e-23
Identities = 46/196 (23%), Positives = 78/196 (39%), Gaps = 37/196 (18%)
Query: 152 SGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYILNNVG------- 204
G AF+ TG G+GK L+ V+ SR M+ LK TAE I + G
Sbjct: 25 QGKVAFI--TGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQ 82
Query: 205 --VVSPDPIFRSFDAT--------------------PSDQI----WNEII-INAGATALM 237
V PD + + P++++ W I I TA +
Sbjct: 83 CDVRDPDMVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFV 142
Query: 238 TKLVLPRM-KLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQV 296
T + ++ K ++ +++ ++ + F+ A+ KA +E SKSL AE +Y ++
Sbjct: 143 TLEIGKQLIKAQKGAAFLSITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWGKYGMRF 202
Query: 297 QYLYPGLVDTNMTKDN 312
+ PG + T
Sbjct: 203 NVIQPGPIKTKGAFSR 218
Score = 90.4 bits (225), Expect = 9e-21
Identities = 37/180 (20%), Positives = 68/180 (37%), Gaps = 14/180 (7%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+TG G+GK L+ V+ SR + L TA +I Q +V IQ D +
Sbjct: 30 FITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPD 89
Query: 62 QVYAHIEKELQDM-DVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMTRM 120
V + + ++ I++NN PT + +S + + +T
Sbjct: 90 MVQNTVSELIKVAGHPNIVINNAAGNFISPT----ERLSPNAWKTITDIVLNGTAFVTLE 145
Query: 121 LLPHM-KQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVV-LTGSTDGIGKAYAIQLAKR 178
+ + K +K + + +I S + V + KA V ++ K+ A + K
Sbjct: 146 IGKQLIKAQKGAAFLSITTIYAETGSGFVVPSASAKAGVEAMS-------KSLAAEWGKY 198
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase,
lactamase inhibitor, AN biosynthesis, NADPH,
oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces
clavuligerus} PDB: 2jap_A*
Length = 247
Score = 95.7 bits (239), Expect = 4e-23
Identities = 42/187 (22%), Positives = 75/187 (40%), Gaps = 38/187 (20%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYILNNVG--------VVSPD 209
++TG++ GIG+A A LA + + +R +EKL+ + + V
Sbjct: 10 ALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQ 69
Query: 210 PIFRSFDATPSDQIWNEI---IINAGATAL------------------------MTKLVL 242
+ + +T + + NAG L MT+ L
Sbjct: 70 GVDAAVASTVEA--LGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAAL 127
Query: 243 PRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYPG 302
P + + +G +V M S++ R Y ATK + FS++L+ E+ E ++V + PG
Sbjct: 128 PHLL-RSKGTVVQMSSIAGRVNVRNAAVYQATKFGVNAFSETLRQEVTERGVRVVVIEPG 186
Query: 303 LVDTNMT 309
DT +
Sbjct: 187 TTDTELR 193
Score = 88.4 bits (220), Expect = 2e-20
Identities = 44/160 (27%), Positives = 71/160 (44%), Gaps = 11/160 (6%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
++TG++ GIG+A A LA + + +R ++KL +E+ +V +++ D ++
Sbjct: 11 LITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAA-GAKVHVLELDVADRQ 69
Query: 62 QVYAHIE---KELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMT 118
V A + + L +D+ LVNN GI P +D I N MT
Sbjct: 70 GVDAAVASTVEALGGLDI--LVNNAGIMLLGP----VEDADTTDWTRMIDTNLLGLMYMT 123
Query: 119 RMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFV 158
R LPH+ R +G +V + SI Y TK V
Sbjct: 124 RAALPHLL-RSKGTVVQMSSIAGRVNVRNAAVYQATKFGV 162
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin,
rossman fold, chorismate metabolism, short-CHA
oxidoreductase, tetramer; 2.00A {Escherichia coli}
Length = 250
Score = 95.3 bits (238), Expect = 5e-23
Identities = 35/190 (18%), Positives = 73/190 (38%), Gaps = 35/190 (18%)
Query: 150 NYSGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEY----------- 198
++SG +V TG+ GIG A A+ + + ++ + +
Sbjct: 4 DFSGKNVWV--TGAGKGIGYATALAFVEAGAKVTGFDQAFTQEQYPFATEVMDVADAAQV 61
Query: 199 ---------------IL-NNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTKLV 241
L N G++ + S + W + +N G + +
Sbjct: 62 AQVCQRLLAETERLDALVNAAGILRMGATDQL-----SKEDWQQTFAVNVGGAFNLFQQT 116
Query: 242 LPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYP 301
+ + + +R G IV + S ++ P ++ Y A+KA ++ + S+ EL ++ + P
Sbjct: 117 MNQFRRQRGGAIVTVASDAAHTPRIGMSAYGASKAALKSLALSVGLELAGSGVRCNVVSP 176
Query: 302 GLVDTNMTKD 311
G DT+M +
Sbjct: 177 GSTDTDMQRT 186
Score = 76.0 bits (188), Expect = 4e-16
Identities = 35/181 (19%), Positives = 61/181 (33%), Gaps = 28/181 (15%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
VTG+ GIG A A+ + + + + DV AD ++
Sbjct: 11 WVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQEQYPFATE--VMDV------ADAAQVA 62
Query: 62 QVYAHIEKELQDMDVGILVNNVGIAPPHPTFR----KFDDISKEHLYNEITVNTGAPSQM 117
QV + E + +D LVN GI T + + VN G +
Sbjct: 63 QVCQRLLAETERLD--ALVNAAGILRMGATDQLSKEDWQQT--------FAVNVGGAFNL 112
Query: 118 TRMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQLAK 177
+ + ++++ G IV V S Y +KA + + + ++LA
Sbjct: 113 FQQTMNQFRRQRGGAIVTVASDAAHTPRIGMSAYGASKAALK------SLALSVGLELAG 166
Query: 178 R 178
Sbjct: 167 S 167
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, SCD,
NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Length = 301
Score = 96.3 bits (240), Expect = 5e-23
Identities = 42/201 (20%), Positives = 67/201 (33%), Gaps = 46/201 (22%)
Query: 150 NYSGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYI---------- 199
+ G A V TG GIG A A + A+R LVL L+ +
Sbjct: 28 GFDGRAAVV--TGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGFDAHGV 85
Query: 200 ---------------------------LNNVGVVSPDPIFRSFDATPSDQIWNEII-INA 231
+N G+V P+ D W +I I+
Sbjct: 86 VCDVRHLDEMVRLADEAFRLLGGVDVVFSNAGIVVAGPLA---QMNHDD--WRWVIDIDL 140
Query: 232 GATALMTKLVLPRM-KLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELY 290
+ + LPR+ + G I S + P+ L Y K + +++L E+
Sbjct: 141 WGSIHAVEAFLPRLLEQGTGGHIAFTASFAGLVPNAGLGTYGVAKYGVVGLAETLAREVK 200
Query: 291 EYNIQVQYLYPGLVDTNMTKD 311
I V L P +V+T + +
Sbjct: 201 PNGIGVSVLCPMVVETKLVSN 221
Score = 88.6 bits (220), Expect = 3e-20
Identities = 38/179 (21%), Positives = 65/179 (36%), Gaps = 13/179 (7%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
VVTG GIG A A E A+R LVL L N +R Q + + D
Sbjct: 35 VVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQ-GFDAHGVVCDVRHLD 93
Query: 62 QVYAHIEKELQDM-DVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMTRM 120
++ ++ + + V ++ +N GI P ++ + I ++
Sbjct: 94 EMVRLADEAFRLLGGVDVVFSNAGIVVAGP----LAQMNHDDWRWVIDIDLWGSIHAVEA 149
Query: 121 LLPHMKQRKR-GMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQLAKR 178
LP + ++ G I F S + + Y K VV G+ + A ++
Sbjct: 150 FLPRLLEQGTGGHIAFTASFAGLVPNAGLGTYGVAKYGVV------GLAETLAREVKPN 202
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A
{Klebsiella pneumoniae} SCOP: c.2.1.2
Length = 256
Score = 95.3 bits (238), Expect = 6e-23
Identities = 40/193 (20%), Positives = 67/193 (34%), Gaps = 44/193 (22%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYI------------------ 199
++TG+ GIGKA A++L K + + + K A I
Sbjct: 5 ALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRD 64
Query: 200 -------------------LNNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTK 239
+NN GV PI TP +++ IN +
Sbjct: 65 QVFAAVEQARKTLGGFDVIVNNAGVAPSTPIESI---TPEI--VDKVYNINVKGVIWGIQ 119
Query: 240 LVLPRM-KLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQY 298
+ K G I+N S + +P L Y+++K + +++ +L I V
Sbjct: 120 AAVEAFKKEGHGGKIINACSQAGHVGNPELAVYSSSKFAVRGLTQTAARDLAPLGITVNG 179
Query: 299 LYPGLVDTNMTKD 311
PG+V T M +
Sbjct: 180 YCPGIVKTPMWAE 192
Score = 93.0 bits (232), Expect = 4e-22
Identities = 45/184 (24%), Positives = 72/184 (39%), Gaps = 17/184 (9%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+VTG+ GIGKA A+ L K + + A+EI + ++ D S+
Sbjct: 6 LVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQA-GGHAVAVKVDVSDRD 64
Query: 62 QVYA---HIEKELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMT 118
QV+A K L D ++VNN G+AP P + I+ E + +N
Sbjct: 65 QVFAAVEQARKTLGGFD--VIVNNAGVAPSTP----IESITPEIVDKVYNINVKGVIWGI 118
Query: 119 RMLLPHM-KQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQLAK 177
+ + K+ G I+ S +P YS +K V G+ + A LA
Sbjct: 119 QAAVEAFKKEGHGGKIINACSQAGHVGNPELAVYSSSKFAVR------GLTQTAARDLAP 172
Query: 178 RKMN 181
+
Sbjct: 173 LGIT 176
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain
oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A
{Saccharomyces cerevisiae}
Length = 287
Score = 95.8 bits (239), Expect = 6e-23
Identities = 48/164 (29%), Positives = 83/164 (50%), Gaps = 12/164 (7%)
Query: 2 VVTGSTDGIGKAYAIELAKR---KMDLVLISRTLQKLNDTANEIRKQY-DVEVKIIQADF 57
++TG++ GIGKA A+E + M L+L +R L+KL + I +++ + +V + Q D
Sbjct: 37 LITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDI 96
Query: 58 SEGLQVYAHIE---KELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAP 114
++ ++ IE +E +D+D+ LVNN G A + I+ E + + N A
Sbjct: 97 TQAEKIKPFIENLPQEFKDIDI--LVNNAGKALG---SDRVGQIATEDIQDVFDTNVTAL 151
Query: 115 SQMTRMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFV 158
+T+ +LP + + G IV +GSI P Y +K V
Sbjct: 152 INITQAVLPIFQAKNSGDIVNLGSIAGRDAYPTGSIYCASKFAV 195
Score = 91.2 bits (227), Expect = 3e-21
Identities = 53/191 (27%), Positives = 86/191 (45%), Gaps = 43/191 (22%)
Query: 158 VVLTGSTDGIGKAYAIQLAKR---KMNLVLISRSMEKLKNTAEYILNNVG---------- 204
V++TG++ GIGKA A++ + M L+L +R +EKL+ + I
Sbjct: 36 VLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLD 95
Query: 205 VVSPDPIFRSFDATPSDQIWNEIII---NAG-------------------------ATAL 236
+ + I + P + + +I I NAG A
Sbjct: 96 ITQAEKIKPFIENLPQE--FKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALIN 153
Query: 237 MTKLVLPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQV 296
+T+ VLP + K G IVN+GS++ R +P + Y A+K + F+ SL+ EL I+V
Sbjct: 154 ITQAVLPIFQAKNSGDIVNLGSIAGRDAYPTGSIYCASKFAVGAFTDSLRKELINTKIRV 213
Query: 297 QYLYPGLVDTN 307
+ PGLV+T
Sbjct: 214 ILIAPGLVETE 224
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6;
protein-CO-factor complex, structural genomics,
structural G consortium, SGC, oxidoreductase; HET: NAD;
1.84A {Homo sapiens} SCOP: c.2.1.2
Length = 246
Score = 94.9 bits (237), Expect = 7e-23
Identities = 44/184 (23%), Positives = 78/184 (42%), Gaps = 35/184 (19%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEY------------------- 198
++LT + GIG+A A+ A+ ++ + KL+ +Y
Sbjct: 9 IILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKYPGIQTRVLDVTKKKQIDQF 68
Query: 199 --------IL-NNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTKLVLPRMKLK 248
+L N G V + ++ W+ + +N + LM K LP+M +
Sbjct: 69 ANEVERLDVLFNVAGFVHHGTVLDC-----EEKDWDFSMNLNVRSMYLMIKAFLPKMLAQ 123
Query: 249 RRGIIVNMGSL-SSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYPGLVDTN 307
+ G I+NM S+ SS K Y+ TKA + +KS+ A+ + I+ + PG VDT
Sbjct: 124 KSGNIINMSSVASSVKGVVNRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTP 183
Query: 308 MTKD 311
++
Sbjct: 184 SLQE 187
Score = 76.0 bits (188), Expect = 4e-16
Identities = 37/179 (20%), Positives = 69/179 (38%), Gaps = 22/179 (12%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
++T + GIG+A A+ A+ ++ KL + ++ D ++
Sbjct: 10 ILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKYPG------IQTRVLDVTKKK 63
Query: 62 QVYAHIEKELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMTRML 121
Q+ E++ +D +L N G D ++ + +N + M +
Sbjct: 64 QIDQFAN-EVERLD--VLFNVAGFVHHGT----VLDCEEKDWDFSMNLNVRSMYLMIKAF 116
Query: 122 LPHMKQRKRGMIVFVGSIVQVFK-SPYFVNYSGTKAFVV-LTGSTDGIGKAYAIQLAKR 178
LP M +K G I+ + S+ K YS TKA V+ LT K+ A ++
Sbjct: 117 LPKMLAQKSGNIINMSSVASSVKGVVNRCVYSTTKAAVIGLT-------KSVAADFIQQ 168
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 94.9 bits (237), Expect = 8e-23
Identities = 33/192 (17%), Positives = 69/192 (35%), Gaps = 44/192 (22%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYI------------------ 199
++TG+ GIG+A A AK ++V+ E + A I
Sbjct: 15 AIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQ 74
Query: 200 -------------------LNNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTK 239
+NN G F + +N + +++
Sbjct: 75 HREAVIKAALDQFGKITVLVNNAGG-GGPKPFDM-----PMSDFEWAFKLNLFSLFRLSQ 128
Query: 240 LVLPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYL 299
L P M+ G I+N+ S++ + + +Y ++KA + ++++ ++ I+V +
Sbjct: 129 LAAPHMQKAGGGAILNISSMAGENTNVRMASYGSSKAAVNHLTRNIAFDVGPMGIRVNAI 188
Query: 300 YPGLVDTNMTKD 311
PG + T+
Sbjct: 189 APGAIKTDALAT 200
Score = 93.4 bits (233), Expect = 3e-22
Identities = 37/181 (20%), Positives = 72/181 (39%), Gaps = 19/181 (10%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+VTG+ GIG+A A AK +V+ + A IR+ + ++ + ++
Sbjct: 16 IVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQA-GGKAIGLECNVTDEQ 74
Query: 62 QVYAHIEKELQDM-DVGILVNNVGIAPPHP---TFRKFDDISKEHLYNEITVNTGAPSQM 117
A I+ L + +LVNN G P P F+ +N + ++
Sbjct: 75 HREAVIKAALDQFGKITVLVNNAGGGGPKPFDMPMSDFEWA--------FKLNLFSLFRL 126
Query: 118 TRMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQLAK 177
+++ PHM++ G I+ + S+ + +Y +KA V + + A +
Sbjct: 127 SQLAAPHMQKAGGGAILNISSMAGENTNVRMASYGSSKAAVN------HLTRNIAFDVGP 180
Query: 178 R 178
Sbjct: 181 M 181
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter
sphaeroides}
Length = 266
Score = 94.9 bits (237), Expect = 9e-23
Identities = 37/181 (20%), Positives = 67/181 (37%), Gaps = 32/181 (17%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEY------------------- 198
++TG+ GIG A L + + R++ +
Sbjct: 31 ALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAADLHLPGDLREAAYADGLPGAVAA 90
Query: 199 ------IL-NNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTKLVLPRMKLKRR 250
I+ NN GV+S I + +D W+ + +N A + + +P M
Sbjct: 91 GLGRLDIVVNNAGVISRGRITET-----TDADWSLSLGVNVEAPFRICRAAIPLMAAAGG 145
Query: 251 GIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYPGLVDTNMTK 310
G IVN+ S +P P Y TKA + ++ + + I++ + P V+T M +
Sbjct: 146 GAIVNVASCWGLRPGPGHALYCLTKAALASLTQCMGMDHAPQGIRINAVCPNEVNTPMLR 205
Query: 311 D 311
Sbjct: 206 T 206
Score = 75.7 bits (187), Expect = 6e-16
Identities = 38/178 (21%), Positives = 65/178 (36%), Gaps = 23/178 (12%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+VTG+ GIG A L + + R + + A ++ D+ + +
Sbjct: 32 LVTGAAGGIGGAVVTALRAAGARVAVADRAVAGI---AADLHLPGDL------REAAYAD 82
Query: 62 QVYAHIEKELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMTRML 121
+ + L +D I+VNN G+ + + + VN AP ++ R
Sbjct: 83 GLPGAVAAGLGRLD--IVVNNAGVISRGR----ITETTDADWSLSLGVNVEAPFRICRAA 136
Query: 122 LPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVV-LTGSTDGIGKAYAIQLAKR 178
+P M G IV V S + P Y TKA + LT + + A +
Sbjct: 137 IPLMAAAGGGAIVNVASCWGLRPGPGHALYCLTKAALASLT-------QCMGMDHAPQ 187
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structure initiative;
1.90A {Novosphingobium aromaticivorans DSM12444}
Length = 319
Score = 95.9 bits (239), Expect = 9e-23
Identities = 41/207 (19%), Positives = 71/207 (34%), Gaps = 53/207 (25%)
Query: 150 NYSGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYI---------- 199
+++G AFV TG +G+G QL + + + + + +
Sbjct: 5 DFAGRTAFV--TGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVM 62
Query: 200 -----------------------------LNNVGVVSPDPIFRSFDATPSDQIWNEII-I 229
NN GV PI +++ D W+ ++ +
Sbjct: 63 GVQLDVASREGFKMAADEVEARFGPVSILCNNAGVNLFQPIE---ESSYDD--WDWLLGV 117
Query: 230 NAGATALMTKLVLPRMK------LKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSK 283
N +PRM ++ G +VN S+++ Y TK + S+
Sbjct: 118 NLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLAAGSPGIYNTTKFAVRGLSE 177
Query: 284 SLQAELYEYNIQVQYLYPGLVDTNMTK 310
SL L +Y I V L PGLV + +
Sbjct: 178 SLHYSLLKYEIGVSVLCPGLVKSYIYA 204
Score = 88.6 bits (220), Expect = 4e-20
Identities = 30/166 (18%), Positives = 56/166 (33%), Gaps = 12/166 (7%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQ-YDVEVKIIQADFSEG 60
VTG +G+G +L + + + ++ + + EV +Q D +
Sbjct: 12 FVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASR 71
Query: 61 LQVYAHIEKELQDM-DVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMTR 119
++ V IL NN G+ P ++ S + + VN
Sbjct: 72 EGFKMAADEVEARFGPVSILCNNAGVNLFQP----IEESSYDDWDWLLGVNLHGVVNGVT 127
Query: 120 MLLPHMKQRKR------GMIVFVGSIVQVFKSPYFVNYSGTKAFVV 159
+P M +R + G +V S+ + Y+ TK V
Sbjct: 128 TFVPRMVERVKAGEQKGGHVVNTASMAAFLAAGSPGIYNTTKFAVR 173
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition,
oxidoreductase; HET: NAD; 2.00A {Brevibacterium
saccharolyticum}
Length = 258
Score = 94.9 bits (237), Expect = 1e-22
Identities = 36/195 (18%), Positives = 71/195 (36%), Gaps = 46/195 (23%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVL--ISRSMEKLKNTAEYI---------------- 199
++TG GIG+ + +LA ++ + + + E+ T + I
Sbjct: 5 AMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTD 64
Query: 200 ---------------------LNNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALM 237
+NN G+ P+ T D +I +N +
Sbjct: 65 KANFDSAIDEAAEKLGGFDVLVNNAGIAQIKPLLEV---TEED--LKQIYSVNVFSVFFG 119
Query: 238 TKLVLPRM-KLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQV 296
+ + +L +G I+N S+++ + P L+ Y+ TK + +++ EL V
Sbjct: 120 IQAASRKFDELGVKGKIINAASIAAIQGFPILSAYSTTKFAVRGLTQAAAQELAPKGHTV 179
Query: 297 QYLYPGLVDTNMTKD 311
PG+V T M +
Sbjct: 180 NAYAPGIVGTGMWEQ 194
Score = 92.2 bits (230), Expect = 8e-22
Identities = 42/184 (22%), Positives = 76/184 (41%), Gaps = 19/184 (10%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVL--ISRTLQKLNDTANEIRKQYDVEVKIIQADFSE 59
+VTG GIG+ + +LA D+ + + + ++ +T I + D + + D ++
Sbjct: 6 MVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLI-EAADQKAVFVGLDVTD 64
Query: 60 GLQVYA---HIEKELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQ 116
+ ++L D +LVNN GIA P ++++E L +VN +
Sbjct: 65 KANFDSAIDEAAEKLGGFD--VLVNNAGIAQIKP----LLEVTEEDLKQIYSVNVFSVFF 118
Query: 117 MTRMLLPHMKQRKR-GMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQL 175
+ + G I+ SI + P YS TK V G+ +A A +L
Sbjct: 119 GIQAASRKFDELGVKGKIINAASIAAIQGFPILSAYSTTKFAVR------GLTQAAAQEL 172
Query: 176 AKRK 179
A +
Sbjct: 173 APKG 176
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 2.00A {Mycobacterium ulcerans}
Length = 281
Score = 95.3 bits (238), Expect = 1e-22
Identities = 36/197 (18%), Positives = 67/197 (34%), Gaps = 39/197 (19%)
Query: 152 SGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYILNNVG------- 204
V TG GIGK A L +++++ R+ +KL + +
Sbjct: 10 QDRTYLV--TGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRY 67
Query: 205 ----VVSPDPIFRSFDAT---------------------P----SDQIWNEII-INAGAT 234
+ + D R+ DA P + W + +N T
Sbjct: 68 EPTDITNEDETARAVDAVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGT 127
Query: 235 ALMTKLVLPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNI 294
+ K M G V + S+++ H + Y TK+ ++ + EL +
Sbjct: 128 MYVLKHAAREMVRGGGGSFVGISSIAASNTHRWFGAYGVTKSAVDHLMQLAADELGASWV 187
Query: 295 QVQYLYPGLVDTNMTKD 311
+V + PGL+ T++
Sbjct: 188 RVNSIRPGLIRTDLVAA 204
Score = 89.5 bits (223), Expect = 1e-20
Identities = 31/183 (16%), Positives = 58/183 (31%), Gaps = 18/183 (9%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYD--VEVKIIQADFSE 59
+VTG GIGK A L ++++ R KL E+ ++ D +
Sbjct: 15 LVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITN 74
Query: 60 GLQVYAHIEKELQD---MDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQ 116
+ ++ + +V+ G + + E + +N
Sbjct: 75 EDETARAVDAVTAWHGRLH--GVVHCAGGSEN---IGPITQVDSEAWRRTVDLNVNGTMY 129
Query: 117 MTRMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVV-LTGSTDGIGKAYAIQL 175
+ + M + G V + SI +F Y TK+ V L + A +L
Sbjct: 130 VLKHAAREMVRGGGGSFVGISSIAASNTHRWFGAYGVTKSAVDHLM-------QLAADEL 182
Query: 176 AKR 178
Sbjct: 183 GAS 185
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol,
chiral alcohol, oxidoreductase; HET: NAD; 2.00A
{Agrobacterium tumefaciens}
Length = 263
Score = 94.5 bits (236), Expect = 1e-22
Identities = 44/196 (22%), Positives = 74/196 (37%), Gaps = 43/196 (21%)
Query: 152 SGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYI------------ 199
SG KA V TG + GIG A A L K + + + + +
Sbjct: 11 SGRKAIV--TGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLENGGFAVEVDVT 68
Query: 200 ----------------------LNNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATAL 236
N GV + P +D+ W+ +NA L
Sbjct: 69 KRASVDAAMQKAIDALGGFDLLCANAGVSTMRPAVDI-----TDEEWDFNFDVNARGVFL 123
Query: 237 MTKLVLPRM-KLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQ 295
++ +G+IVN SL+++ P L +Y+A+K + ++++L E+ NI+
Sbjct: 124 ANQIACRHFLASNTKGVIVNTASLAAKVGAPLLAHYSASKFAVFGWTQALAREMAPKNIR 183
Query: 296 VQYLYPGLVDTNMTKD 311
V + PG V T M +
Sbjct: 184 VNCVCPGFVKTAMQER 199
Score = 91.5 bits (228), Expect = 2e-21
Identities = 37/179 (20%), Positives = 67/179 (37%), Gaps = 16/179 (8%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+VTG + GIG A A L K + + + + ++ D ++
Sbjct: 16 IVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLENG----GFAVEVDVTKRA 71
Query: 62 QVYAHIEKELQDM-DVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMTRM 120
V A ++K + + +L N G++ P DI+ E VN ++
Sbjct: 72 SVDAAMQKAIDALGGFDLLCANAGVSTMRP----AVDITDEEWDFNFDVNARGVFLANQI 127
Query: 121 LLPHM-KQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQLAKR 178
H +G+IV S+ +P +YS +K V G +A A ++A +
Sbjct: 128 ACRHFLASNTKGVIVNTASLAAKVGAPLLAHYSASKFAVF------GWTQALAREMAPK 180
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain
dehydrogenase/reductase family, lyase; 2.00A
{Arthrobacter SP}
Length = 244
Score = 93.7 bits (234), Expect = 2e-22
Identities = 22/203 (10%), Positives = 52/203 (25%), Gaps = 44/203 (21%)
Query: 161 TGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEY---------------------- 198
T + G A L + +V S +
Sbjct: 7 THARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFESENPGTIALAEQKPERLVDAT 66
Query: 199 --------IL-NNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTKLVLPRMKLK 248
+ +N + P + +D ++ + L+ + + ++
Sbjct: 67 LQHGEAIDTIVSNDYIPRPMNRLPLEGTSEAD--IRQMFEALSIFPILLLQSAIAPLRAA 124
Query: 249 RRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYPGLVDTNM 308
++ + S +KP + Y +A +S L I + + P +
Sbjct: 125 GGASVIFITSSVGKKPLAYNPLYGPARAATVALVESAAKTLSRDGILLYAIGPNFFNNPT 184
Query: 309 TKDNSLT----------AKNIPL 321
S +++PL
Sbjct: 185 YFPTSDWENNPELRERVDRDVPL 207
Score = 81.0 bits (201), Expect = 7e-18
Identities = 25/178 (14%), Positives = 55/178 (30%), Gaps = 13/178 (7%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+VT + G A L + +V + + + Q E L
Sbjct: 5 LVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFESENPGTIALAEQKP--ERL 62
Query: 62 QVYAHIEKELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMTRML 121
+ + +D +V+N I P + S+ + + P + +
Sbjct: 63 --VDATLQHGEAID--TIVSNDYIPRP-MNRLPLEGTSEADIRQMFEALSIFPILLLQSA 117
Query: 122 LPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQLAKRK 179
+ ++ ++F+ S V Y Y +A V + ++ A L++
Sbjct: 118 IAPLRAAGGASVIFITSSVGKKPLAYNPLYGPARAATV------ALVESAAKTLSRDG 169
>1xhl_A Short-chain dehydrogenase/reductase family member putative
tropinone reductase-II...; parallel beta-sheet of seven
strands in the order 3214567; HET: NDP TNE; 2.40A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 297
Score = 94.6 bits (236), Expect = 2e-22
Identities = 49/183 (26%), Positives = 78/183 (42%), Gaps = 17/183 (9%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQ--YDVEVKIIQADFSE 59
++TGS++GIG++ A+ AK + + R +L +T +I K ++ + AD +E
Sbjct: 30 IITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTE 89
Query: 60 GLQVYAHIEKELQD---MDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQ 116
I L +D ILVNN G T D E +N A +
Sbjct: 90 ASGQDDIINTTLAKFGKID--ILVNNAGANLADGT--ANTDQPVELYQKTFKLNFQAVIE 145
Query: 117 MTRMLLPHMKQRKRGMIVFVGSIVQVFKS-PYFVNYSGTKAFVVLTGSTDGIGKAYAIQL 175
MT+ H+ + K G IV V SIV ++ + Y+ KA + D + AI L
Sbjct: 146 MTQKTKEHLIKTK-GEIVNVSSIVAGPQAHSGYPYYACAKAAL------DQYTRCTAIDL 198
Query: 176 AKR 178
+
Sbjct: 199 IQH 201
Score = 93.5 bits (233), Expect = 5e-22
Identities = 42/202 (20%), Positives = 79/202 (39%), Gaps = 46/202 (22%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYIL----------------- 200
V++TGS++GIG++ A+ AK + + R+ ++L+ T + IL
Sbjct: 29 VIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVT 88
Query: 201 -----------------------NNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATAL 236
NN G D + D + + +N A
Sbjct: 89 EASGQDDIINTTLAKFGKIDILVNNAGANLADGT-ANTDQPVEL--YQKTFKLNFQAVIE 145
Query: 237 MTKLVLPRMKLKRRGIIVNMGS-LSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQ 295
MT+ + +K +G IVN+ S ++ + H YA KA ++ +++ +L ++ ++
Sbjct: 146 MTQKTKEHL-IKTKGEIVNVSSIVAGPQAHSGYPYYACAKAALDQYTRCTAIDLIQHGVR 204
Query: 296 VQYLYPGLVDTNMTKDNSLTAK 317
V + PG V T L
Sbjct: 205 VNSVSPGAVATGFMGAMGLPET 226
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding,
structural genomics, PSI-biology; HET: MSE; 2.10A
{Sinorhizobium meliloti} PDB: 1k2w_A
Length = 259
Score = 93.7 bits (234), Expect = 2e-22
Identities = 40/190 (21%), Positives = 69/190 (36%), Gaps = 41/190 (21%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYI------------------ 199
++TGS GIG+A+A + + + +E+ + A I
Sbjct: 11 ALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIGPAAYAVQMDVTRQDSID 70
Query: 200 ----------------LNNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTKLVL 242
+NN + PI T + ++ IN T +
Sbjct: 71 AAIAATVEHAGGLDILVNNAALFDLAPIVEI---TRES--YEKLFAINVAGTLFTLQAAA 125
Query: 243 PRM-KLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYP 301
+M R G I+NM S + R+ + Y ATKA + ++S +L ++ I V + P
Sbjct: 126 RQMIAQGRGGKIINMASQAGRRGEALVAIYCATKAAVISLTQSAGLDLIKHRINVNAIAP 185
Query: 302 GLVDTNMTKD 311
G+VD
Sbjct: 186 GVVDGEHWDG 195
Score = 83.0 bits (206), Expect = 2e-18
Identities = 36/181 (19%), Positives = 65/181 (35%), Gaps = 20/181 (11%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
++TGS GIG+A+A + + + +++ A EI +Q D +
Sbjct: 12 LITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIG----PAAYAVQMDVTRQD 67
Query: 62 QVYA---HIEKELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMT 118
+ A + +D ILVNN + P +I++E +N
Sbjct: 68 SIDAAIAATVEHAGGLD--ILVNNAALFDLAP----IVEITRESYEKLFAINVAGTLFTL 121
Query: 119 RMLLPHM-KQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQLAK 177
+ M Q + G I+ + S Y TKA V+ + ++ + L K
Sbjct: 122 QAAARQMIAQGRGGKIINMASQAGRRGEALVAIYCATKAAVI------SLTQSAGLDLIK 175
Query: 178 R 178
Sbjct: 176 H 176
>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold,
short-chain dehydrogenase/reducta ALLO-threonine
dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*
Length = 248
Score = 93.8 bits (234), Expect = 2e-22
Identities = 44/185 (23%), Positives = 77/185 (41%), Gaps = 41/185 (22%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYI------------------ 199
V++TG+T G G+ + ++ ++ R E+L+ + +
Sbjct: 3 VLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIE 62
Query: 200 ----------------LNNVGVVSP-DPIFRSFDATPSDQIWNEII-INAGATALMTKLV 241
+NN G+ +P A+ D W +I N MT+ V
Sbjct: 63 EMLASLPAEWCNIDILVNNAGLALGMEPAH---KASVED--WETMIDTNNKGLVYMTRAV 117
Query: 242 LPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYP 301
LP M + G I+N+GS + P+ Y ATKA++ FS +L+ +L+ ++V + P
Sbjct: 118 LPGMVERNHGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEP 177
Query: 302 GLVDT 306
GLV
Sbjct: 178 GLVGG 182
Score = 93.0 bits (232), Expect = 3e-22
Identities = 43/162 (26%), Positives = 66/162 (40%), Gaps = 16/162 (9%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+VTG+T G G+ ++ ++ R ++L + +E+ + I Q D
Sbjct: 4 LVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL----GDNLYIAQLDVRNRA 59
Query: 62 QVYAHIE---KELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMT 118
+ + E ++D+ LVNN G+A S E I N MT
Sbjct: 60 AIEEMLASLPAEWCNIDI--LVNNAGLALG---MEPAHKASVEDWETMIDTNNKGLVYMT 114
Query: 119 RMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVN--YSGTKAFV 158
R +LP M +R G I+ +GS PY Y TKAFV
Sbjct: 115 RAVLPGMVERNHGHIINIGSTAG--SWPYAGGNVYGATKAFV 154
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide
catalysis, enantioselectivity, lyase; HET: RNO; 1.70A
{Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A
1px0_A* 1pwx_A* 1zo8_A*
Length = 254
Score = 93.8 bits (234), Expect = 2e-22
Identities = 27/186 (14%), Positives = 58/186 (31%), Gaps = 44/186 (23%)
Query: 161 TGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEY---------------------- 198
T G A++L++ + S ++ +
Sbjct: 7 TNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAETYPQLKPMSEQEPAELIEAV 66
Query: 199 --------IL-NNVGVVSPDPIFRSFDATP----SDQIWNEII-INAGATALMTKLVLPR 244
+L +N + P + + + + + V +
Sbjct: 67 TSAYGQVDVLVSNDI------FAP--EFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQ 118
Query: 245 MKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYPGLV 304
MK ++ G I+ + S + P L+ Y + +A + +L EL EYNI V + P +
Sbjct: 119 MKKRKSGHIIFITSATPFGPWKELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYL 178
Query: 305 DTNMTK 310
+ +
Sbjct: 179 HSEDSP 184
Score = 78.8 bits (195), Expect = 5e-17
Identities = 29/183 (15%), Positives = 53/183 (28%), Gaps = 27/183 (14%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+VT G A+ L++ + + +E+ Q
Sbjct: 5 IVTNVKHFGGMGSALRLSEAGHTVACHDES----FKQKDELEA---FAETYPQLKPMSEQ 57
Query: 62 QVYAHIEKELQDM-DVGILVNNVGIAPPHPTFRK-----FDDISKEHLYNEITVNTGAPS 115
+ IE V +LV+N AP K + + P
Sbjct: 58 EPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGA--------VEALQIRPF 109
Query: 116 QMTRMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQL 175
+ + MK+RK G I+F+ S Y+ +A + A + +L
Sbjct: 110 ALVNAVASQMKKRKSGHIIFITSATPFGPWKELSTYTSARAGAC------TLANALSKEL 163
Query: 176 AKR 178
+
Sbjct: 164 GEY 166
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 93.8 bits (234), Expect = 2e-22
Identities = 30/178 (16%), Positives = 65/178 (36%), Gaps = 18/178 (10%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
++TG++ +G A+ L + +++ RT + E+R+ + DFS
Sbjct: 31 LITGASQRVGLHCALRLLEHGHRVIISYRTEH---ASVTELRQA---GAVALYGDFSCET 84
Query: 62 QVYAHIEKELQDMD-VGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMTRM 120
+ A I+ + +V+N + ++ +V+ AP +
Sbjct: 85 GIMAFIDLLKTQTSSLRAVVHNASE-----WLAETPGEEADNFTRMFSVHMLAPYLINLH 139
Query: 121 LLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQLAKR 178
P + + IV + V S + Y TKA + + + ++A + A
Sbjct: 140 CEPLLTASEVADIVHISDDVTRKGSSKHIAYCATKAGL------ESLTLSFAARFAPL 191
Score = 86.1 bits (214), Expect = 1e-19
Identities = 30/201 (14%), Positives = 60/201 (29%), Gaps = 44/201 (21%)
Query: 158 VVL-TGSTDGIGKAYAIQLAKRKMNLVLISRSMEK----------------LKNTAEY-- 198
+L TG++ +G A++L + +++ R+
Sbjct: 29 PILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTELRQAGAVALYGDFSCETGIMA 88
Query: 199 -------------IL-NNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTKLVLP 243
+ +N + D + + ++ A L+ P
Sbjct: 89 FIDLLKTQTSSLRAVVHNASEWLAETPGEEADN------FTRMFSVHMLAPYLINLHCEP 142
Query: 244 RMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYPGL 303
+ IV++ +RK Y ATKA +E + S A ++V + P L
Sbjct: 143 LLTASEVADIVHISDDVTRKGSSKHIAYCATKAGLESLTLSFAARFAP-LVKVNGIAPAL 201
Query: 304 VDTNMTKDNSLTAK---NIPL 321
+ D + A L
Sbjct: 202 LMFQPKDDAAYRANALAKSAL 222
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid
synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH
binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus
subtilis} PDB: 3oic_A*
Length = 258
Score = 93.7 bits (234), Expect = 2e-22
Identities = 37/180 (20%), Positives = 84/180 (46%), Gaps = 13/180 (7%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLI-SRTLQKLNDTANEIRKQYDVEVKIIQADFSEG 60
+VTGS+ G+GKA AI LA+ ++V+ +R+ + +TA EI + V+V +++A+ +
Sbjct: 8 LVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIE-KLGVKVLVVKANVGQP 66
Query: 61 LQVYAHIEKELQDMD-VGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMTR 119
++ ++ + + + VNN P ++ + H + +N A +
Sbjct: 67 AKIKEMFQQIDETFGRLDVFVNNAASGVLRP----VMELEETHWDWTMNINAKALLFCAQ 122
Query: 120 MLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQLAKRK 179
M++ G IV + S+ + + +KA + + + + A++L+ ++
Sbjct: 123 EAAKLMEKNGGGHIVSISSLGSIRYLENYTTVGVSKAAL------EALTRYLAVELSPKQ 176
Score = 93.3 bits (233), Expect = 4e-22
Identities = 49/210 (23%), Positives = 77/210 (36%), Gaps = 51/210 (24%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLI-SRSMEKLKNTAEYI----------------- 199
++TGS+ G+GKA AI+LA+ N+V+ +RS + TAE I
Sbjct: 7 ALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQP 66
Query: 200 --------------------LNNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMT 238
+NN P+ + W+ + INA A
Sbjct: 67 AKIKEMFQQIDETFGRLDVFVNNAASGVLRPVMEL-----EETHWDWTMNINAKALLFCA 121
Query: 239 KLVLPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQY 298
+ M+ G IV++ SL S + T +KA +E ++ L EL I V
Sbjct: 122 QEAAKLMEKNGGGHIVSISSLGSIRYLENYTTVGVSKAALEALTRYLAVELSPKQIIVNA 181
Query: 299 LYPGLVDTNMTKDNSLT-------AKNIPL 321
+ G +DT+ K +N P
Sbjct: 182 VSGGAIDTDALKHFPNREDLLEDARQNTPA 211
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 94.2 bits (235), Expect = 2e-22
Identities = 37/208 (17%), Positives = 72/208 (34%), Gaps = 44/208 (21%)
Query: 156 AFVVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYILNNVG---------VV 206
AF+ TG GIG A + + V+ SRS+ ++ A + G V
Sbjct: 30 AFI--TGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVR 87
Query: 207 SPDPIFRSFDAT--------------------PSDQI----WNEII-INAGATALMTKLV 241
+P + + D P+ + + ++ I+ T +++++
Sbjct: 88 APPAVMAAVDQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVL 147
Query: 242 LPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYP 301
+ G+IVN+ + + + + KA ++ ++ L E NI+V L P
Sbjct: 148 YEKFFRDHGGVIVNITATLGNRGQALQVHAGSAKAAVDAMTRHLAVEWGPQNIRVNSLAP 207
Query: 302 GLVDTNMTKDN--------SLTAKNIPL 321
G + S PL
Sbjct: 208 GPISGTEGLRRLGGPQASLSTKVTASPL 235
Score = 93.5 bits (233), Expect = 4e-22
Identities = 32/178 (17%), Positives = 66/178 (37%), Gaps = 11/178 (6%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+TG GIG A + V+ SR+L ++ A ++ + D
Sbjct: 31 FITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPP 90
Query: 62 QVYAHIEKELQDM-DVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMTRM 120
V A +++ L++ + IL+N P +S + ++T ++R+
Sbjct: 91 AVMAAVDQALKEFGRIDILINCAAGNFLCPA----GALSFNAFKTVMDIDTSGTFNVSRV 146
Query: 121 LLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQLAKR 178
L + G+IV + + + V+ KA V D + + A++ +
Sbjct: 147 LYEKFFRDHGGVIVNITATLGNRGQALQVHAGSAKAAV------DAMTRHLAVEWGPQ 198
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 93.7 bits (234), Expect = 2e-22
Identities = 41/180 (22%), Positives = 73/180 (40%), Gaps = 15/180 (8%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+VTGS G+G AYA LA ++L L ++ + + ++ + + D ++ L
Sbjct: 13 LVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRK-GYDAHGVAFDVTDEL 71
Query: 62 QVYAHIEKELQDM-DVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMTRM 120
+ A K + V IL+NN GI P ++ E+ I N + ++R
Sbjct: 72 AIEAAFSKLDAEGIHVDILINNAGIQYRKP----MVELELENWQKVIDTNLTSAFLVSRS 127
Query: 121 LLPHM-KQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVV-LTGSTDGIGKAYAIQLAKR 178
M + G I+ +GS+ P Y+ K + LT + A + A+
Sbjct: 128 AAKRMIARNSGGKIINIGSLTSQAARPTVAPYTAAKGGIKMLT-------CSMAAEWAQF 180
Score = 89.1 bits (222), Expect = 9e-21
Identities = 46/199 (23%), Positives = 79/199 (39%), Gaps = 46/199 (23%)
Query: 152 SGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYI------------ 199
+G A V TGS G+G AYA LA ++L L + + +
Sbjct: 8 TGKTALV--TGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAF 65
Query: 200 -------------------------LNNVGVVSPDPIFRSFDATPSDQIWNEII-INAGA 233
+NN G+ P+ + + W ++I N +
Sbjct: 66 DVTDELAIEAAFSKLDAEGIHVDILINNAGIQYRKPMV---ELELEN--WQKVIDTNLTS 120
Query: 234 TALMTKLVLPRM-KLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEY 292
L+++ RM G I+N+GSL+S+ P + Y A K +++ + S+ AE ++
Sbjct: 121 AFLVSRSAAKRMIARNSGGKIINIGSLTSQAARPTVAPYTAAKGGIKMLTCSMAAEWAQF 180
Query: 293 NIQVQYLYPGLVDTNMTKD 311
NIQ + PG + T+M
Sbjct: 181 NIQTNAIGPGYILTDMNTA 199
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
3aut_A* 3auu_A*
Length = 261
Score = 93.3 bits (233), Expect = 3e-22
Identities = 40/182 (21%), Positives = 83/182 (45%), Gaps = 16/182 (8%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRT-LQKLNDTANEIRKQYDVEVKIIQADFSEG 60
V+TGS+ G+GK+ AI A K +V+ R+ + N EI+K E ++ D +
Sbjct: 11 VITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKV-GGEAIAVKGDVTVE 69
Query: 61 LQVYAHIEKELQDM-DVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVN-TGAPSQMT 118
V ++ +++ + +++NN G+ P ++S I N TGA +
Sbjct: 70 SDVINLVQSAIKEFGKLDVMINNAGLENPVS----SHEMSLSDWNKVIDTNLTGA-FLGS 124
Query: 119 RMLLPHM-KQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQLAK 177
R + + + +G ++ + S+ + P FV+Y+ +K + + + A++ A
Sbjct: 125 REAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYAASKGGMK------LMTETLALEYAP 178
Query: 178 RK 179
+
Sbjct: 179 KG 180
Score = 89.1 bits (222), Expect = 1e-20
Identities = 49/211 (23%), Positives = 88/211 (41%), Gaps = 52/211 (24%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSM-EKLKNTAEYI----------------- 199
VV+TGS+ G+GK+ AI+ A K +V+ RS ++ + E I
Sbjct: 10 VVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVE 69
Query: 200 --------------------LNNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMT 238
+NN G+ +P + SD WN++I N L +
Sbjct: 70 SDVINLVQSAIKEFGKLDVMINNAGLENPVSSHE---MSLSD--WNKVIDTNLTGAFLGS 124
Query: 239 KLVLPRM-KLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQ 297
+ + + +G ++NM S+ + P P +YAA+K M+L +++L E I+V
Sbjct: 125 REAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVN 184
Query: 298 YLYPGLVDTNMTKDNSLTAK-------NIPL 321
+ PG ++T + + + IP+
Sbjct: 185 NIGPGAINTPINAEKFADPEQRADVESMIPM 215
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain,
structura genomics consortium, SGC, oxidoreductase;
1.80A {Homo sapiens}
Length = 260
Score = 93.5 bits (233), Expect = 3e-22
Identities = 38/230 (16%), Positives = 74/230 (32%), Gaps = 57/230 (24%)
Query: 152 SGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYI------------ 199
+G V TG++ GIG+ A+QL K + + R ++ L+ A+
Sbjct: 4 NGQVCVV--TGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLGGQCVPVVC 61
Query: 200 --------------------------LNNVGVVSPD-------PIFRSFDATPSDQIWNE 226
+NN + + +W++
Sbjct: 62 DSSQESEVRSLFEQVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWET-----PASMWDD 116
Query: 227 II-INAGATALMTKLVLPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSL 285
I + + M +G+IV + S S + F Y KA + +
Sbjct: 117 INNVGLRGHYFCSVYGARLMVPAGQGLIVVISSPGSL-QYMFNVPYGVGKAACDKLAADC 175
Query: 286 QAELYEYNIQVQYLYPGLVDTNMTKDNSLT---AKNIPLSIQPILYPNAR 332
EL + + L+PG+V T + K++ ++ L + +A
Sbjct: 176 AHELRRHGVSCVSLWPGIVQTELLKEHMAKEEVLQDPVLKQFKSAFSSAE 225
Score = 93.1 bits (232), Expect = 4e-22
Identities = 37/182 (20%), Positives = 68/182 (37%), Gaps = 13/182 (7%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
VVTG++ GIG+ A++L K + + R L L A E + + + D S+
Sbjct: 9 VVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSL-GGQCVPVVCDSSQES 67
Query: 62 QVYAHIEKELQDMD--VGILVNNVGIAPPHPTF---RKFDDISKEHLYNEITVNTGAPSQ 116
+V + E+ ++ + +LVNN + F + + V
Sbjct: 68 EVRSLFEQVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYF 127
Query: 117 MTRMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQLA 176
+ M +G+IV + S + + + V Y KA D + A +L
Sbjct: 128 CSVYGARLMVPAGQGLIVVISSPGSL-QYMFNVPYGVGKAAC------DKLAADCAHELR 180
Query: 177 KR 178
+
Sbjct: 181 RH 182
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty
acid synthesis, short-chain dehydrogenases/reductases,
structural genomics; HET: ADE; 1.90A {Homo sapiens}
SCOP: c.2.1.2
Length = 303
Score = 93.9 bits (234), Expect = 4e-22
Identities = 44/200 (22%), Positives = 74/200 (37%), Gaps = 51/200 (25%)
Query: 156 AFVVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYI---------------- 199
A V TG GIGKA +L + N+V+ SR +E+LK+ A+ +
Sbjct: 21 AIV--TGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQ 78
Query: 200 --------------------------LNNVGVVSPDPIFRSFDATPSDQIWNEII-INAG 232
+NN G P S + W+ ++ N
Sbjct: 79 CNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHI-----SSKGWHAVLETNLT 133
Query: 233 ATALMTKLVLPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEY 292
T M K V + G IVN+ + ++ P + A +A + +KSL E
Sbjct: 134 GTFYMCKAVYSSWMKEHGGSIVNI-IVPTKAGFPLAVHSGAARAGVYNLTKSLALEWACS 192
Query: 293 NIQVQYLYPGLVDTNMTKDN 312
I++ + PG++ + +N
Sbjct: 193 GIRINCVAPGVIYSQTAVEN 212
Score = 87.3 bits (217), Expect = 9e-20
Identities = 44/183 (24%), Positives = 72/183 (39%), Gaps = 18/183 (9%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYD----VEVKIIQADF 57
+VTG GIGKA EL + ++V+ SR L++L A+E++ V IQ +
Sbjct: 22 IVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNI 81
Query: 58 SEGLQVYAHIEKELQDM-DVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQ 116
+V ++ L + LVNN G P IS + + + N
Sbjct: 82 RNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEH----ISSKGWHAVLETNLTGTFY 137
Query: 117 MTRMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVV-LTGSTDGIGKAYAIQL 175
M + + + G IV + + P V+ +A V LT K+ A++
Sbjct: 138 MCKAVYSSWMKEHGGSIVNI-IVPTKAGFPLAVHSGAARAGVYNLT-------KSLALEW 189
Query: 176 AKR 178
A
Sbjct: 190 ACS 192
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET:
NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Length = 255
Score = 92.3 bits (230), Expect = 7e-22
Identities = 51/182 (28%), Positives = 74/182 (40%), Gaps = 22/182 (12%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+VTGST GIG A LA+ ++VL A ++ V+ AD S+
Sbjct: 8 LVTGSTSGIGLGIAQVLARAGANIVLNGFGDP---APALAEIARHGVKAVHHPADLSDVA 64
Query: 62 QVYAHIEKELQDM-DVGILVNNVGIAPPHPTFR----KFDDISKEHLYNEITVNTGAPSQ 116
Q+ A ++ V ILVNN GI P + +D I I +N A
Sbjct: 65 QIEALFALAEREFGGVDILVNNAGIQHVAPVEQFPLESWDKI--------IALNLSAVFH 116
Query: 117 MTRMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQLA 176
TR+ LP M+ R G I+ + S+ + S Y K VV G+ K ++ A
Sbjct: 117 GTRLALPGMRARNWGRIINIASVHGLVGSTGKAAYVAAKHGVV------GLTKVVGLETA 170
Query: 177 KR 178
Sbjct: 171 TS 172
Score = 86.9 bits (216), Expect = 7e-20
Identities = 48/196 (24%), Positives = 73/196 (37%), Gaps = 43/196 (21%)
Query: 152 SGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLISRS--------MEKLKNTAEY----- 198
G A V TGST GIG A LA+ N+VL + + A +
Sbjct: 3 KGKTALV--TGSTSGIGLGIAQVLARAGANIVLNGFGDPAPALAEIARHGVKAVHHPADL 60
Query: 199 ---------------------IL-NNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATA 235
IL NN G+ P+ + P + W++II +N A
Sbjct: 61 SDVAQIEALFALAEREFGGVDILVNNAGIQHVAPVEQ----FPLES-WDKIIALNLSAVF 115
Query: 236 LMTKLVLPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQ 295
T+L LP M+ + G I+N+ S+ Y A K + +K + E N+
Sbjct: 116 HGTRLALPGMRARNWGRIINIASVHGLVGSTGKAAYVAAKHGVVGLTKVVGLETATSNVT 175
Query: 296 VQYLYPGLVDTNMTKD 311
+ PG V T + +
Sbjct: 176 CNAICPGWVLTPLVQK 191
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics,
PSI-2, dehydrogenase, protein structure initiative;
2.30A {Oenococcus oeni psu-1}
Length = 262
Score = 92.2 bits (230), Expect = 9e-22
Identities = 39/184 (21%), Positives = 73/184 (39%), Gaps = 21/184 (11%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVL---ISRTLQKLNDTANEIRKQYDVEVKIIQADFS 58
V+ G +G A A ++LVL ++ N +E+ + +V + Q+D S
Sbjct: 15 VIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDEL-EDQGAKVALYQSDLS 73
Query: 59 EGLQV---YAHIEKELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPS 115
+V + EKE +D I +N VG P + S+ T+N
Sbjct: 74 NEEEVAKLFDFAEKEFGKVD--IAINTVGKVLKKP----IVETSEAEFDAMDTINNKVAY 127
Query: 116 QMTRMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQL 175
+ HM G I+ + + + + ++ Y+G KA V + +A + +L
Sbjct: 128 FFIKQAAKHM--NPNGHIITIATSLLAAYTGFYSTYAGNKAPV------EHYTRAASKEL 179
Query: 176 AKRK 179
K++
Sbjct: 180 MKQQ 183
Score = 86.0 bits (214), Expect = 1e-19
Identities = 36/211 (17%), Positives = 64/211 (30%), Gaps = 54/211 (25%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVL---ISRSMEKLKNTAEYI--------------- 199
+V+ G +G A A +NLVL ++ + + +
Sbjct: 14 IVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLS 73
Query: 200 ----------------------LNNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATAL 236
+N VG V PI + S+ ++ + IN
Sbjct: 74 NEEEVAKLFDFAEKEFGKVDIAINTVGKVLKKPIVET-----SEAEFDAMDTINNKVAYF 128
Query: 237 MTKLVLPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQV 296
K M G I+ + + F + YA KA +E ++++ EL + I V
Sbjct: 129 FIKQAAKHMN--PNGHIITIATSLLAAYTGFYSTYAGNKAPVEHYTRAASKELMKQQISV 186
Query: 297 QYLYPGLVDTNMTKDNS------LTAKNIPL 321
+ PG +DT+
Sbjct: 187 NAIAPGPMDTSFFYGQETKESTAFHKSQAMG 217
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A
{Pseudomonas aeruginosa}
Length = 272
Score = 92.3 bits (230), Expect = 9e-22
Identities = 48/188 (25%), Positives = 82/188 (43%), Gaps = 38/188 (20%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYILNNVGVV-------SPDP 210
+ +TG+T G G+A A + A+ +LVL R E+L+ A + V+
Sbjct: 24 LFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAKTRVLPLTLDVRDRAA 83
Query: 211 IFRSFDATPSDQIWNEIII---NAG-------------------------ATALMTKLVL 242
+ + D P + + + NAG T+L+L
Sbjct: 84 MSAAVDNLPEE--FATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLL 141
Query: 243 PRMKLKRRGI-IVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYP 301
PR+ G IVN+GS++ + P+P Y TKA++E FS +L+ +L ++V L P
Sbjct: 142 PRLIAHGAGASIVNLGSVAGKWPYPGSHVYGGTKAFVEQFSLNLRCDLQGTGVRVTNLEP 201
Query: 302 GLVDTNMT 309
GL ++ +
Sbjct: 202 GLCESEFS 209
Score = 91.5 bits (228), Expect = 2e-21
Identities = 43/161 (26%), Positives = 66/161 (40%), Gaps = 11/161 (6%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+TG+T G G+A A A+ LVL R ++L A E+ V + D +
Sbjct: 25 FITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSA--KTRVLPLTLDVRDRA 82
Query: 62 QVYAHIE---KELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMT 118
+ A ++ +E + L+NN G+A + + N T
Sbjct: 83 AMSAAVDNLPEEFATLRG--LINNAGLALG---TDPAQSCDLDDWDTMVDTNIKGLLYST 137
Query: 119 RMLLPHMKQRKRGM-IVFVGSIVQVFKSPYFVNYSGTKAFV 158
R+LLP + G IV +GS+ + P Y GTKAFV
Sbjct: 138 RLLLPRLIAHGAGASIVNLGSVAGKWPYPGSHVYGGTKAFV 178
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold,
oxidoreductase; HET: NAD; 1.75A {Sulfolobus
acidocaldarius}
Length = 254
Score = 91.4 bits (228), Expect = 1e-21
Identities = 40/215 (18%), Positives = 86/215 (40%), Gaps = 44/215 (20%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYI------------------ 199
V++TG+ GIG+A A + A +V + ++L + +
Sbjct: 10 VIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKK 69
Query: 200 -------------------LNNVGVVSP-DPIFRSFDATPSDQIWNEII-INAGATALMT 238
NN G++ P+ SD++W ++ +N + +
Sbjct: 70 DVEEFVRRTFETYSRIDVLCNNAGIMDGVTPVAEV-----SDELWERVLAVNLYSAFYSS 124
Query: 239 KLVLPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQY 298
+ V+P M + +G+IVN S++ + Y K + ++S+ A + I+
Sbjct: 125 RAVIPIMLKQGKGVIVNTASIAGIRGGFAGAPYTVAKHGLIGLTRSIAAHYGDQGIRAVA 184
Query: 299 LYPGLVDTNMTKDNSLTAKNIPLSIQPILYPNARL 333
+ PG V TN+ +S ++ ++ ++ ++RL
Sbjct: 185 VLPGTVKTNIGLGSSKPSELGMRTLTKLMSLSSRL 219
Score = 85.6 bits (213), Expect = 2e-19
Identities = 43/181 (23%), Positives = 77/181 (42%), Gaps = 17/181 (9%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+VTG+ GIG+A A + A +V + +LN E+R EV ++AD S+
Sbjct: 11 IVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGM-GKEVLGVKADVSKKK 69
Query: 62 QVYAHIEKELQD---MDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMT 118
V + + + +D +L NN GI ++S E + VN + +
Sbjct: 70 DVEEFVRRTFETYSRID--VLCNNAGIMDG---VTPVAEVSDELWERVLAVNLYSAFYSS 124
Query: 119 RMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVV-LTGSTDGIGKAYAIQLAK 177
R ++P M ++ +G+IV SI + Y+ K ++ LT ++ A
Sbjct: 125 RAVIPIMLKQGKGVIVNTASIAGIRGGFAGAPYTVAKHGLIGLT-------RSIAAHYGD 177
Query: 178 R 178
+
Sbjct: 178 Q 178
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET:
NAD KPC; 1.8A {Xanthobacter autotrophicus}
Length = 250
Score = 91.0 bits (227), Expect = 2e-21
Identities = 39/193 (20%), Positives = 72/193 (37%), Gaps = 41/193 (21%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYIL----------------- 200
++TG++ G G A A + R + + S E L+ TA
Sbjct: 5 AIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADVADE 64
Query: 201 ---------------------NNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMT 238
NN G+ +++++ +N L
Sbjct: 65 GDVNAAIAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQ--FDKVMAVNVRGIFLGC 122
Query: 239 KLVLPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQY 298
+ VLP M L+ G+IVN+ S++S P + Y +K + +KS+ + I+
Sbjct: 123 RAVLPHMLLQGAGVIVNIASVASLVAFPGRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNA 182
Query: 299 LYPGLVDTNMTKD 311
+ PG+++T MT+
Sbjct: 183 VCPGMIETPMTQW 195
Score = 82.9 bits (206), Expect = 1e-18
Identities = 46/181 (25%), Positives = 75/181 (41%), Gaps = 14/181 (7%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+VTG++ G G A A R + + + + L +TA Y +V ++AD ++
Sbjct: 6 IVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADVADEG 65
Query: 62 QVYAHIEKELQD---MDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMT 118
V A I ++ +D +LVNN GI E + VN
Sbjct: 66 DVNAAIAATMEQFGAID--VLVNNAGITGNSEA-GVLHTTPVEQFDKVMAVNVRGIFLGC 122
Query: 119 RMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVV-LTGSTDGIGKAYAIQLAK 177
R +LPHM + G+IV + S+ + P Y+ +K V+ LT K+ A+ A
Sbjct: 123 RAVLPHMLLQGAGVIVNIASVASLVAFPGRSAYTTSKGAVLQLT-------KSVAVDYAG 175
Query: 178 R 178
Sbjct: 176 S 176
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP}
SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 90.6 bits (226), Expect = 2e-21
Identities = 47/212 (22%), Positives = 77/212 (36%), Gaps = 43/212 (20%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEK-------------------------- 191
V+TG +GIG+A A + A ++ +
Sbjct: 10 AVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDV 69
Query: 192 ---LKNTAEY-----IL-NNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTKLV 241
K IL NN G+ P + + W + IN + LM K
Sbjct: 70 EAFGKQVISTFGRCDILVNNAGIYPLIPFDEL-----TFEQWKKTFEINVDSGFLMAKAF 124
Query: 242 LPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYP 301
+P MK G I+N+ S + T+Y +TKA F+++L ++L + I V + P
Sbjct: 125 VPGMKRNGWGRIINLTSTTYWLKIEAYTHYISTKAANIGFTRALASDLGKDGITVNAIAP 184
Query: 302 GLVDTNMTKDNSLTAKNIPLSIQPILYPNARL 333
LV T T+ + + + +L RL
Sbjct: 185 SLVRTATTE--ASALSAMFDVLPNMLQAIPRL 214
Score = 87.5 bits (218), Expect = 3e-20
Identities = 44/182 (24%), Positives = 69/182 (37%), Gaps = 22/182 (12%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
V+TG +GIG+A A A D+ + + IR V ++ D S+
Sbjct: 11 VITGGANGIGRAIAERFAVEGADIAIADLV--PAPEAEAAIR-NLGRRVLTVKCDVSQPG 67
Query: 62 QVYAHIEKELQDM-DVGILVNNVGIAPPHPTFR----KFDDISKEHLYNEITVNTGAPSQ 116
V A ++ + ILVNN GI P P ++ +N +
Sbjct: 68 DVEAFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKT--------FEINVDSGFL 119
Query: 117 MTRMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQLA 176
M + +P MK+ G I+ + S K + +Y TKA + G +A A L
Sbjct: 120 MAKAFVPGMKRNGWGRIINLTSTTYWLKIEAYTHYISTKAANI------GFTRALASDLG 173
Query: 177 KR 178
K
Sbjct: 174 KD 175
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology,
NEW structural genomics research consortium, nysgrc;
HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Length = 255
Score = 90.7 bits (226), Expect = 2e-21
Identities = 38/195 (19%), Positives = 69/195 (35%), Gaps = 42/195 (21%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYI------------------ 199
++ G T G+G A +L + ++L R+ + E
Sbjct: 11 AIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFGPRVHALRSDIADLNEIA 70
Query: 200 ----------------LNNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTKLVL 242
N GV +P + S+ ++ +N + +
Sbjct: 71 VLGAAAGQTLGAIDLLHINAGVSELEPFDQV-----SEASYDRQFAVNTKGAFFTVQRLT 125
Query: 243 PRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYPG 302
P ++ G IV S++ HP ++ Y+A+KA + F+ L AEL I+V + PG
Sbjct: 126 PLIR--EGGSIVFTSSVADEGGHPGMSVYSASKAALVSFASVLAAELLPRGIRVNSVSPG 183
Query: 303 LVDTNMTKDNSLTAK 317
+DT +T
Sbjct: 184 FIDTPTKGVAGITEA 198
Score = 86.8 bits (216), Expect = 6e-20
Identities = 42/181 (23%), Positives = 71/181 (39%), Gaps = 21/181 (11%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+V G T G+G A L + +++L R + E V +++D ++
Sbjct: 12 IVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF----GPRVHALRSDIADLN 67
Query: 62 QV---YAHIEKELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMT 118
++ A + L +D +L N G++ P FD +S+ + VNT
Sbjct: 68 EIAVLGAAAGQTLGAID--LLHINAGVSELEP----FDQVSEASYDRQFAVNTKGAFFTV 121
Query: 119 RMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQLAKR 178
+ L P + R+ G IVF S+ P YS +KA +V A +L R
Sbjct: 122 QRLTPLI--REGGSIVFTSSVADEGGHPGMSVYSASKAALV------SFASVLAAELLPR 173
Query: 179 K 179
Sbjct: 174 G 174
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold,
tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB:
2wdz_A* 3lqf_A*
Length = 254
Score = 90.6 bits (226), Expect = 3e-21
Identities = 45/197 (22%), Positives = 69/197 (35%), Gaps = 44/197 (22%)
Query: 152 SGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEY------------- 198
G A V TG+ GIG A L+LI R L A+
Sbjct: 10 DGACAAV--TGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELGAAVAARIVADV 67
Query: 199 --------------------IL-NNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATAL 236
IL N+ G+ + D W +++ +N
Sbjct: 68 TDAEAMTAAAAEAEAVAPVSILVNSAGIARLHDALET-----DDATWRQVMAVNVDGMFW 122
Query: 237 MTKLVLPRMKLKRRGIIVNMGSLSSRK--PHPFLTNYAATKAYMELFSKSLQAELYEYNI 294
++ M + G IVN+GS+S F ++Y A+K + +++L AE +
Sbjct: 123 ASRAFGRAMVARGAGAIVNLGSMSGTIVNRPQFASSYMASKGAVHQLTRALAAEWAGRGV 182
Query: 295 QVQYLYPGLVDTNMTKD 311
+V L PG V T MT
Sbjct: 183 RVNALAPGYVATEMTLK 199
Score = 90.3 bits (225), Expect = 4e-21
Identities = 47/180 (26%), Positives = 67/180 (37%), Gaps = 17/180 (9%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
VTG+ GIG A L+LI R L+ A E+ I AD ++
Sbjct: 15 AVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELG---AAVAARIVADVTDAE 71
Query: 62 QVYAHIEKELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMTRML 121
+ A + V ILVN+ GIA H + + VN +R
Sbjct: 72 AMTAAAAEAEAVAPVSILVNSAGIARLHD----ALETDDATWRQVMAVNVDGMFWASRAF 127
Query: 122 LPHMKQRKRGMIVFVGSIV--QVFKSPYFVNYSGTKAFVV-LTGSTDGIGKAYAIQLAKR 178
M R G IV +GS+ V + + +Y +K V LT +A A + A R
Sbjct: 128 GRAMVARGAGAIVNLGSMSGTIVNRPQFASSYMASKGAVHQLT-------RALAAEWAGR 180
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA,
nation project on protein structural and functional
analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB:
1x1e_A* 2ekq_A
Length = 239
Score = 89.8 bits (224), Expect = 4e-21
Identities = 37/187 (19%), Positives = 66/187 (35%), Gaps = 38/187 (20%)
Query: 156 AFVVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEY----------------- 198
A V TG + GIG+A A L R + + SR+ E+ +
Sbjct: 5 ALV--TGGSRGIGRAIAEALVARGYRVAIASRNPEEAAQSLGAVPLPTDLEKDDPKGLVK 62
Query: 199 ----------IL-NNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTKLVLPRMK 246
+L + V P S + W ++ ++ L+ + P M
Sbjct: 63 RALEALGGLHVLVHAAAVNVRKPALEL-----SYEEWRRVLYLHLDVAFLLAQAAAPHMA 117
Query: 247 LKRRGIIVNMGSLSSRKPHPFLT--NYAATKAYMELFSKSLQAELYEYNIQVQYLYPGLV 304
G ++ +GS+++ + Y K + +++L E I+V L PG V
Sbjct: 118 EAGWGRVLFIGSVTTFTAGGPVPIPAYTTAKTALLGLTRALAKEWARLGIRVNLLCPGYV 177
Query: 305 DTNMTKD 311
+T T
Sbjct: 178 ETEFTLP 184
Score = 85.6 bits (213), Expect = 1e-19
Identities = 31/183 (16%), Positives = 67/183 (36%), Gaps = 29/183 (15%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+VTG + GIG+A A L R + + SR ++ + + D+E + L
Sbjct: 6 LVTGGSRGIGRAIAEALVARGYRVAIASRNPEEAAQSLGAVPLPTDLEKDDPKGLVKRAL 65
Query: 62 QVYAHIEKELQDMDVGILVNNVGIAPPHPTFR----KFDDISKEHLYNEITVNTGAPSQM 117
+ + +LV+ + P ++ + + ++ +
Sbjct: 66 EALGGLH---------VLVHAAAVNVRKPALELSYEEWRRV--------LYLHLDVAFLL 108
Query: 118 TRMLLPHMKQRKRGMIVFVGSIV--QVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQL 175
+ PHM + G ++F+GS+ Y+ K ++ G+ +A A +
Sbjct: 109 AQAAAPHMAEAGWGRVLFIGSVTTFTAGGPVPIPAYTTAKTALL------GLTRALAKEW 162
Query: 176 AKR 178
A+
Sbjct: 163 ARL 165
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD
binding; 2.30A {Thermoplasma volcanium}
Length = 269
Score = 90.3 bits (225), Expect = 4e-21
Identities = 38/182 (20%), Positives = 68/182 (37%), Gaps = 34/182 (18%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYI------------------ 199
++TG + GIG A L + +V +S + N +++
Sbjct: 17 AIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDVNVSDHFKIDVTNEEEVKEAVEKTT 76
Query: 200 ---------LNNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTKLVLPRMKLKR 249
+NN G+ P+ TP++ W II +N + LM K +P M
Sbjct: 77 KKYGRIDILVNNAGIEQYSPLHL----TPTEI-WRRIIDVNVNGSYLMAKYTIPVMLAIG 131
Query: 250 RGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYPGLVDTNMT 309
G I+N+ S+ S Y +K + ++S+ + I+ + PG + T M
Sbjct: 132 HGSIINIASVQSYAATKNAAAYVTSKHALLGLTRSVAIDYAP-KIRCNAVCPGTIMTPMV 190
Query: 310 KD 311
Sbjct: 191 IK 192
Score = 74.5 bits (184), Expect = 2e-15
Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 28/181 (15%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+VTG + GIG A L + +V +S + + ++ + D +
Sbjct: 18 IVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDVNVSDHFK-----------IDVTNEE 66
Query: 62 QVYAHIEKELQD---MDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMT 118
+V +EK + +D ILVNN GI P E I VN M
Sbjct: 67 EVKEAVEKTTKKYGRID--ILVNNAGIEQYSPL----HLTPTEIWRRIIDVNVNGSYLMA 120
Query: 119 RMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVV-LTGSTDGIGKAYAIQLAK 177
+ +P M G I+ + S+ + Y +K ++ LT ++ AI A
Sbjct: 121 KYTIPVMLAIGHGSIINIASVQSYAATKNAAAYVTSKHALLGLT-------RSVAIDYAP 173
Query: 178 R 178
+
Sbjct: 174 K 174
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology,
NEW YORK structural genomi research consortium, nysgrc;
2.00A {Rhizobium etli}
Length = 277
Score = 90.7 bits (226), Expect = 5e-21
Identities = 36/189 (19%), Positives = 67/189 (35%), Gaps = 40/189 (21%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYI------------------ 199
++TG GIG+A A AK +V+ + + A I
Sbjct: 30 CIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEIGSKAFGVRVDVSSAKDAE 89
Query: 200 ----------------LNNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTKLVL 242
+NN G + + W+ I+ +N L +K V+
Sbjct: 90 SMVEKTTAKWGRVDVLVNNAGFGTTGNVV---TIPEET--WDRIMSVNVKGIFLCSKYVI 144
Query: 243 PRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYPG 302
P M+ G I+N S ++ T Y A+K + ++++ + + I+V + PG
Sbjct: 145 PVMRRNGGGSIINTTSYTATSAIADRTAYVASKGAISSLTRAMAMDHAKEGIRVNAVAPG 204
Query: 303 LVDTNMTKD 311
+D+
Sbjct: 205 TIDSPYFTK 213
Score = 77.6 bits (192), Expect = 1e-16
Identities = 42/181 (23%), Positives = 67/181 (37%), Gaps = 21/181 (11%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+VTG GIG+A A AK +V+ ANEI + ++ D S
Sbjct: 31 IVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEI----GSKAFGVRVDVSSAK 86
Query: 62 QVYAHIEKELQD---MDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMT 118
+ +EK +D +LVNN G I +E ++VN +
Sbjct: 87 DAESMVEKTTAKWGRVD--VLVNNAGFGTTGN----VVTIPEETWDRIMSVNVKGIFLCS 140
Query: 119 RMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVV-LTGSTDGIGKAYAIQLAK 177
+ ++P M++ G I+ S Y +K + LT +A A+ AK
Sbjct: 141 KYVIPVMRRNGGGSIINTTSYTATSAIADRTAYVASKGAISSLT-------RAMAMDHAK 193
Query: 178 R 178
Sbjct: 194 E 194
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 89.9 bits (224), Expect = 6e-21
Identities = 34/180 (18%), Positives = 64/180 (35%), Gaps = 13/180 (7%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+VTG IG A LA+ +++ ++R +V + D +
Sbjct: 17 IVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRM-EGHDVSSVVMDVTNTE 75
Query: 62 QVYAHIEKELQDM-DVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMTRM 120
V + + V ILV GI D ++ +N + +
Sbjct: 76 SVQNAVRSVHEQEGRVDILVACAGICISEVKAEDMTD---GQWLKQVDINLNGMFRSCQA 132
Query: 121 LLPHMKQRKRGMIVFVGSIV--QVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQLAKR 178
+ M ++K+G+IV +GS+ V + Y+ +KA V ++ A + A
Sbjct: 133 VGRIMLEQKQGVIVAIGSMSGLIVNRPQQQAAYNASKAGVH------QYIRSLAAEWAPH 186
Score = 86.0 bits (214), Expect = 1e-19
Identities = 36/201 (17%), Positives = 66/201 (32%), Gaps = 48/201 (23%)
Query: 152 SGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYI------------ 199
A V TG IG A LA+ +++ E +
Sbjct: 12 DNRVAIV--TGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGHDVSSVVM 69
Query: 200 -------------------------LNNVGVVSPDPIFRSFDATPSDQIWNEII-INAGA 233
+ G+ + +D W + + IN
Sbjct: 70 DVTNTESVQNAVRSVHEQEGRVDILVACAGICISEVKAEDM----TDGQWLKQVDINLNG 125
Query: 234 TALMTKLVLPRMKLKRRGIIVNMGSLSS---RKPHPFLTNYAATKAYMELFSKSLQAELY 290
+ V M +++G+IV +GS+S +P Y A+KA + + +SL AE
Sbjct: 126 MFRSCQAVGRIMLEQKQGVIVAIGSMSGLIVNRPQQ-QAAYNASKAGVHQYIRSLAAEWA 184
Query: 291 EYNIQVQYLYPGLVDTNMTKD 311
+ I+ + P ++T +T+
Sbjct: 185 PHGIRANAVAPTYIETTLTRF 205
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.45A
{Sinorhizobium meliloti}
Length = 260
Score = 89.9 bits (224), Expect = 6e-21
Identities = 37/197 (18%), Positives = 71/197 (36%), Gaps = 38/197 (19%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKN----------------------- 194
VV+TG++ GIG R +V SRS++ +
Sbjct: 31 VVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSADPDIHTVAGDISKPETADRIVREG 90
Query: 195 TAEY----IL-NNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTKLVLPRMKLK 248
+ L NN GV P + + ++ + +N +T+ M +
Sbjct: 91 IERFGRIDSLVNNAGVFLAKPFVEM-----TQEDYDHNLGVNVAGFFHITQRAAAEMLKQ 145
Query: 249 RRGIIVNMGSLSSRKPHPFLTNYAA--TKAYMELFSKSLQAELYEYNIQVQYLYPGLVDT 306
G IV++ + +P + + A TK + ++SL E ++V + PG++ T
Sbjct: 146 GSGHIVSITTSLVDQPMVGMPSALASLTKGGLNAVTRSLAMEFSRSGVRVNAVSPGVIKT 205
Query: 307 NMTKDNSLTA--KNIPL 321
M + + P+
Sbjct: 206 PMHPAETHSTLAGLHPV 222
Score = 77.6 bits (192), Expect = 1e-16
Identities = 29/184 (15%), Positives = 63/184 (34%), Gaps = 31/184 (16%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
V+TG++ GIG R +V + + D ++ + D S+
Sbjct: 32 VITGASQGIGAGLVRAYRDRNYRVV--------ATSRSIK--PSADPDIHTVAGDISKPE 81
Query: 62 QVYAHIEKELQDM-DVGILVNNVGIAPPHPTFR----KFDDISKEHLYNEITVNTGAPSQ 116
+ + ++ + LVNN G+ P +D + VN
Sbjct: 82 TADRIVREGIERFGRIDSLVNNAGVFLAKPFVEMTQEDYDHN--------LGVNVAGFFH 133
Query: 117 MTRMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVN--YSGTKAFVVLTGSTDGIGKAYAIQ 174
+T+ M ++ G IV + + + + S TK + + ++ A++
Sbjct: 134 ITQRAAAEMLKQGSGHIVSITTSLVDQPMVGMPSALASLTKGGLN------AVTRSLAME 187
Query: 175 LAKR 178
++
Sbjct: 188 FSRS 191
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 90.3 bits (225), Expect = 6e-21
Identities = 38/182 (20%), Positives = 66/182 (36%), Gaps = 16/182 (8%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
VTGS+ GIG A A A+ D+ + + + K Y V K + + S+
Sbjct: 38 SVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQ-KTYGVHSKAYKCNISDPK 96
Query: 62 QV---YAHIEKELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMT 118
V + EK+ +D + V N G+ D + + I+V+ +
Sbjct: 97 SVEETISQQEKDFGTID--VFVANAGVTWTQGPE--IDVDNYDSWNKIISVDLNGVYYCS 152
Query: 119 RMLLPHMKQRKRGMIVFVGSIV--QVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQLA 176
+ K+ +G ++ SI V Y+ KA + K+ AI+ A
Sbjct: 153 HNIGKIFKKNGKGSLIITSSISGKIVNIPQLQAPYNTAKAACT------HLAKSLAIEWA 206
Query: 177 KR 178
Sbjct: 207 PF 208
Score = 77.2 bits (191), Expect = 3e-16
Identities = 37/195 (18%), Positives = 61/195 (31%), Gaps = 46/195 (23%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEY------------------- 198
+TGS+ GIG A A A+ ++ + S +
Sbjct: 37 ASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISDPK 96
Query: 199 -----------------IL-NNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTK 239
+ N GV D D WN+II ++ +
Sbjct: 97 SVEETISQQEKDFGTIDVFVANAGVTWTQGPE--IDVDNYDS-WNKIISVDLNGVYYCSH 153
Query: 240 LVLPRMKLKRRGIIVNMGSLSS---RKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQV 296
+ K +G ++ S+S P Y KA +KSL E + +V
Sbjct: 154 NIGKIFKKNGKGSLIITSSISGKIVNIPQL-QAPYNTAKAACTHLAKSLAIEWAPF-ARV 211
Query: 297 QYLYPGLVDTNMTKD 311
+ PG +DT++T
Sbjct: 212 NTISPGYIDTDITDF 226
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 90.0 bits (224), Expect = 6e-21
Identities = 44/184 (23%), Positives = 75/184 (40%), Gaps = 22/184 (11%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
VTG + GIG A A LA R + + +R + ++ + +R +V D +
Sbjct: 28 FVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAA-GHDVDGSSCDVTSTD 86
Query: 62 QVYAHIEKELQDM-DVGILVNNVGIAPPHPTFR----KFDDISKEHLYNEITVNTGAPSQ 116
+V+A + ++ +GILVN+ G T + D+ + N +
Sbjct: 87 EVHAAVAAAVERFGPIGILVNSAGRNGGGETADLDDALWADV--------LDTNLTGVFR 138
Query: 117 MTRMLLPH--MKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQ 174
+TR +L M++ G IV + S Y Y+ +K VV G K+ +
Sbjct: 139 VTREVLRAGGMREAGWGRIVNIASTGGKQGVMYAAPYTASKHGVV------GFTKSVGFE 192
Query: 175 LAKR 178
LAK
Sbjct: 193 LAKT 196
Score = 86.5 bits (215), Expect = 1e-19
Identities = 43/200 (21%), Positives = 71/200 (35%), Gaps = 47/200 (23%)
Query: 152 SGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYIL----------- 200
AFV TG + GIG A A LA R + + +R + + + +
Sbjct: 23 RPQTAFV--TGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSC 80
Query: 201 --------------------------NNVGVVSPDPIFRSFDATPSDQIWNEII-INAGA 233
N+ G D +W +++ N
Sbjct: 81 DVTSTDEVHAAVAAAVERFGPIGILVNSAGRNGGGETADL-----DDALWADVLDTNLTG 135
Query: 234 TALMTKLVLP--RMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYE 291
+T+ VL M+ G IVN+ S ++ + Y A+K + F+KS+ EL +
Sbjct: 136 VFRVTREVLRAGGMREAGWGRIVNIASTGGKQGVMYAAPYTASKHGVVGFTKSVGFELAK 195
Query: 292 YNIQVQYLYPGLVDTNMTKD 311
I V + PG V+T M +
Sbjct: 196 TGITVNAVCPGYVETPMAER 215
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 89.5 bits (223), Expect = 9e-21
Identities = 34/183 (18%), Positives = 65/183 (35%), Gaps = 18/183 (9%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+VTG + GIG+ A L + + + +R + DTA + D + I AD S
Sbjct: 33 LVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYGDCQA--IPADLSSEA 90
Query: 62 QVYAHIEKELQDMD-VGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMTRM 120
+ + + ILVNN G + + + +N + +
Sbjct: 91 GARRLAQALGELSARLDILVNNAGTSWGAA----LESYPVSGWEKVMQLNVTSVFSCIQQ 146
Query: 121 LLPHMK----QRKRGMIVFVGSIVQVFKSPYFV-NYSGTKAFVVLTGSTDGIGKAYAIQL 175
LLP ++ ++ +GS+ + Y +KA + + + A +L
Sbjct: 147 LLPLLRRSASAENPARVINIGSVAGISAMGEQAYAYGPSKAALH------QLSRMLAKEL 200
Query: 176 AKR 178
Sbjct: 201 VGE 203
Score = 79.9 bits (198), Expect = 3e-17
Identities = 41/215 (19%), Positives = 76/215 (35%), Gaps = 48/215 (22%)
Query: 152 SGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYILNNVG------- 204
+G A V TG + GIG+ A L + + + +R E +TA L+ G
Sbjct: 28 AGRIALV--TGGSRGIGQMIAQGLLEAGARVFICARDAEACADTAT-RLSAYGDCQAIPA 84
Query: 205 -VVSPDPIFRSFDATP------------------------SDQIWNEII-INAGATALMT 238
+ S R A W +++ +N +
Sbjct: 85 DLSSEAGARRLAQALGELSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCI 144
Query: 239 KLVLPRMK----LKRRGIIVNMGSLSSRKPHPFLT-NYAATKAYMELFSKSLQAELYEYN 293
+ +LP ++ + ++N+GS++ Y +KA + S+ L EL +
Sbjct: 145 QQLLPLLRRSASAENPARVINIGSVAGISAMGEQAYAYGPSKAALHQLSRMLAKELVGEH 204
Query: 294 IQVQYLYPGLVDTNMTKD-------NSLTAKNIPL 321
I V + PG + MT+ + +IP+
Sbjct: 205 INVNVIAPGRFPSRMTRHIANDPQALEADSASIPM 239
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain,
oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans}
SCOP: c.2.1.2
Length = 262
Score = 89.2 bits (222), Expect = 9e-21
Identities = 39/194 (20%), Positives = 69/194 (35%), Gaps = 42/194 (21%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYI------------------ 199
++TG+ IG A A++LA+ + L+ + E L+ +
Sbjct: 10 CLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEE 69
Query: 200 -------------------LNNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTK 239
NN G F PSD + ++ IN + K
Sbjct: 70 AVIGTVDSVVRDFGKIDFLFNNAGYQGA---FAPVQDYPSDD-FARVLTINVTGAFHVLK 125
Query: 240 LVLPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYL 299
V +M + G IVN S++ K P + Y +K + +++ +L YNI+V +
Sbjct: 126 AVSRQMITQNYGRIVNTASMAGVKGPPNMAAYGTSKGAIIALTETAALDLAPYNIRVNAI 185
Query: 300 YPGLVDTNMTKDNS 313
PG + +
Sbjct: 186 SPGYMGPGFMWERQ 199
Score = 84.5 bits (210), Expect = 5e-19
Identities = 40/181 (22%), Positives = 70/181 (38%), Gaps = 17/181 (9%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+VTG+ IG A A+ LA+ + L+ + L +R++ VE + D +
Sbjct: 11 LVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREK-GVEARSYVCDVTSEE 69
Query: 62 QVYAHIEKELQD---MDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMT 118
V ++ ++D +D L NN G F D + +T+N +
Sbjct: 70 AVIGTVDSVVRDFGKID--FLFNNAGYQGA---FAPVQDYPSDDFARVLTINVTGAFHVL 124
Query: 119 RMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVV-LTGSTDGIGKAYAIQLAK 177
+ + M + G IV S+ V P Y +K ++ LT + A+ LA
Sbjct: 125 KAVSRQMITQNYGRIVNTASMAGVKGPPNMAAYGTSKGAIIALT-------ETAALDLAP 177
Query: 178 R 178
Sbjct: 178 Y 178
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus
thermophilus HB8, structural genomics, NPPSFA; HET: NAD;
1.65A {Thermus thermophilus} SCOP: c.2.1.2
Length = 256
Score = 89.1 bits (222), Expect = 1e-20
Identities = 36/186 (19%), Positives = 62/186 (33%), Gaps = 37/186 (19%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEY------------------- 198
V++TG GIG+A A A+ + L E +
Sbjct: 9 VLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAEAIGGAFFQVDLEDERERVRFV 68
Query: 199 -----------IL-NNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTKLVLPRM 245
+L NN + +P W ++ +N A ++ L M
Sbjct: 69 EEAAYALGRVDVLVNNAAIAAPGSALTV-----RLPEWRRVLEVNLTAPMHLSALAAREM 123
Query: 246 KLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYPGLVD 305
+ G IVN+ S+ Y A+K + ++SL +L I+V + PG +
Sbjct: 124 RKVGGGAIVNVASVQGLFAEQENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIA 183
Query: 306 TNMTKD 311
T +
Sbjct: 184 TEAVLE 189
Score = 73.3 bits (181), Expect = 4e-15
Identities = 42/185 (22%), Positives = 72/185 (38%), Gaps = 32/185 (17%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+VTG GIG+A A A+ + L + + A I + Q D +
Sbjct: 10 LVTGGARGIGRAIAQAFAREGALVALCDLRPEGK-EVAEAIGGAF------FQVDLEDER 62
Query: 62 QVYAHIEKELQD---MDVGILVNNVGIAPPHPTFR----KFDDISKEHLYNEITVNTGAP 114
+ +E+ +D +LVNN IA P ++ + + VN AP
Sbjct: 63 ERVRFVEEAAYALGRVD--VLVNNAAIAAPGSALTVRLPEWRRV--------LEVNLTAP 112
Query: 115 SQMTRMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVV-LTGSTDGIGKAYAI 173
++ + M++ G IV V S+ +F Y+ +K +V LT ++ A+
Sbjct: 113 MHLSALAAREMRKVGGGAIVNVASVQGLFAEQENAAYNASKGGLVNLT-------RSLAL 165
Query: 174 QLAKR 178
LA
Sbjct: 166 DLAPL 170
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 88.9 bits (221), Expect = 1e-20
Identities = 21/180 (11%), Positives = 48/180 (26%), Gaps = 32/180 (17%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTA--------------------E 197
+++ G + +G + N + I + + +
Sbjct: 25 ILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNADHSFTIKDSGEEEIKSVIEKINSK 84
Query: 198 Y-----ILNNVGVVSPDPIFRSFDATPSDQIWNEIIINAGATALMTKLVLPRMKLKRRGI 252
+ G S + + +N + + + + G+
Sbjct: 85 SIKVDTFVCAAGGWSGGNASSDEFLKSVKGMID---MNLYSAFASAHIGAKLLN--QGGL 139
Query: 253 IVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAEL--YEYNIQVQYLYPGLVDTNMTK 310
V G+ ++ + Y ATKA K L +E + P +DT +
Sbjct: 140 FVLTGASAALNRTSGMIAYGATKAATHHIIKDLASENGGLPAGSTSLGILPVTLDTPTNR 199
Score = 76.9 bits (190), Expect = 2e-16
Identities = 24/181 (13%), Positives = 49/181 (27%), Gaps = 25/181 (13%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+V G + +G + + + I D + I + E
Sbjct: 26 LVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNADHSFTI----KD------SGEEEIK 75
Query: 62 QVYAHIEKELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMTRML 121
V I + +D V G D + + I +N + +
Sbjct: 76 SVIEKINSKSIKVD--TFVCAAGGWSGGNA---SSDEFLKSVKGMIDMNLYSAFASAHIG 130
Query: 122 LPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVV-LTGSTDGIGKAYAIQLAKRKM 180
+ + G+ V G+ + ++ + Y TKA + K A +
Sbjct: 131 AKLL--NQGGLFVLTGASAALNRTSGMIAYGATKAATHHII-------KDLASENGGLPA 181
Query: 181 N 181
Sbjct: 182 G 182
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase;
ssgcid, decode, niaid, UWPPG, SBRI, structural genomics;
2.45A {Mycobacterium tuberculosis}
Length = 277
Score = 89.1 bits (222), Expect = 1e-20
Identities = 47/189 (24%), Positives = 69/189 (36%), Gaps = 40/189 (21%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYI------------------ 199
++TG+ GIG A A +LA +++ + A I
Sbjct: 32 AIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKIGCGAAACRVDVSDEQQII 91
Query: 200 ----------------LNNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTKLVL 242
+ N GVV + D T D ++ +I IN L TK
Sbjct: 92 AMVDACVAAFGGVDKLVANAGVVHLASLI---DTTVED--FDRVIAINLRGAWLCTKHAA 146
Query: 243 PRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYPG 302
PRM + G IVN+ SL+ + Y +KA + S+ AEL I+ L P
Sbjct: 147 PRMIERGGGAIVNLSSLAGQVAVGGTGAYGMSKAGIIQLSRITAAELRSSGIRSNTLLPA 206
Query: 303 LVDTNMTKD 311
VDT M +
Sbjct: 207 FVDTPMQQT 215
Score = 73.3 bits (181), Expect = 5e-15
Identities = 39/181 (21%), Positives = 65/181 (35%), Gaps = 21/181 (11%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+VTG+ GIG A A LA ++ + A +I + D S+
Sbjct: 33 IVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKI----GCGAAACRVDVSDEQ 88
Query: 62 QVYAHIEKELQD---MDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMT 118
Q+ A ++ + +D LV N G+ D + E I +N T
Sbjct: 89 QIIAMVDACVAAFGGVD--KLVANAGVVHLAS----LIDTTVEDFDRVIAINLRGAWLCT 142
Query: 119 RMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVV-LTGSTDGIGKAYAIQLAK 177
+ P M +R G IV + S+ Y +KA ++ L+ + A +L
Sbjct: 143 KHAAPRMIERGGGAIVNLSSLAGQVAVGGTGAYGMSKAGIIQLS-------RITAAELRS 195
Query: 178 R 178
Sbjct: 196 S 196
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.00A {Streptomyces avermitilis}
Length = 281
Score = 89.3 bits (222), Expect = 1e-20
Identities = 36/191 (18%), Positives = 72/191 (37%), Gaps = 31/191 (16%)
Query: 161 TGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYILNNVGVV-----SPDPIFRSF 215
TG++ G G+A A ++ +R E L + + + + I
Sbjct: 11 TGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAYPDRAEAISLDVTDGERIDVVA 70
Query: 216 DA-------------------------TPSDQIWNEIIINAGATALMTKLVLPRMKLKRR 250
T ++ + ++ A +T+ +LP+M+ +
Sbjct: 71 ADVLARYGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERGS 130
Query: 251 GIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYPGLVDTNMTK 310
G +VN+ S + + Y+ATKA +E S+ L E+ + I+V + PG TN+
Sbjct: 131 GSVVNISSFGGQLSFAGFSAYSATKAALEQLSEGLADEVAPFGIKVLIVEPGAFRTNLFG 190
Query: 311 DNSL-TAKNIP 320
+ ++ P
Sbjct: 191 KGAAYFSEENP 201
Score = 74.6 bits (184), Expect = 2e-15
Identities = 41/157 (26%), Positives = 70/157 (44%), Gaps = 13/157 (8%)
Query: 3 VTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGLQ 62
VTG++ G G+A A ++ +R + L+D + Y + I D ++G +
Sbjct: 10 VTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDD----LVAAYPDRAEAISLDVTDGER 65
Query: 63 VYAHIEKELQD---MDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMTR 119
+ L +DV LVNN G F++ ++ L + ++ P+++TR
Sbjct: 66 IDVVAADVLARYGRVDV--LVNNAGRT----QVGAFEETTERELRDLFELHVFGPARLTR 119
Query: 120 MLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKA 156
LLP M++R G +V + S F YS TKA
Sbjct: 120 ALLPQMRERGSGSVVNISSFGGQLSFAGFSAYSATKA 156
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 88.8 bits (221), Expect = 1e-20
Identities = 39/183 (21%), Positives = 72/183 (39%), Gaps = 20/183 (10%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
VVTG T GIG+ A A+ ++ + R+ ++ ++ + +V +Q D S+
Sbjct: 14 VVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRA 73
Query: 62 QVYAHIEKELQDM-DVGILVNNVGIAPPHPTFR----KFDDISKEHLYNEITVNTGAPSQ 116
Q A + +++ + ++ N G+ P P + + I VN
Sbjct: 74 QCDALAGRAVEEFGGIDVVCANAGVFPDAPLATMTPEQLNGI--------FAVNVNGTFY 125
Query: 117 MTRMLLPHMKQRKRGMIVFVGSIV-QVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQL 175
+ L + G +V SI + P + +Y TKA + G + AI+L
Sbjct: 126 AVQACLDALIASGSGRVVLTSSITGPITGYPGWSHYGATKAAQL------GFMRTAAIEL 179
Query: 176 AKR 178
A
Sbjct: 180 APH 182
Score = 83.4 bits (207), Expect = 1e-18
Identities = 39/204 (19%), Positives = 67/204 (32%), Gaps = 40/204 (19%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYILNNVG---------VVSP 208
VV+TG T GIG+ A A+ N+ + RS + + V
Sbjct: 13 VVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDR 72
Query: 209 DPIFRSFDA-----------------TP-------SDQIWNEII-INAGATALMTKLVLP 243
P + + N I +N T + L
Sbjct: 73 AQCDALAGRAVEEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLD 132
Query: 244 RMKLKRRGIIVNMGSLS-SRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYPG 302
+ G +V S++ +P ++Y ATKA F ++ EL + I V + PG
Sbjct: 133 ALIASGSGRVVLTSSITGPITGYPGWSHYGATKAAQLGFMRTAAIELAPHKITVNAIMPG 192
Query: 303 LVDTNMTK---DNSLTA--KNIPL 321
+ T + + + ++IP
Sbjct: 193 NIMTEGLLENGEEYIASMARSIPA 216
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain
dehydrogenase/reductase, 4-pyridoxola NAD+,
oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti}
PDB: 3ndr_A* 3nug_A*
Length = 247
Score = 88.3 bits (220), Expect = 2e-20
Identities = 42/189 (22%), Positives = 74/189 (39%), Gaps = 41/189 (21%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEY------------------- 198
++TG+ GIGKA A +LA +++ + E K A
Sbjct: 9 ALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASIGKKARAIAADISDPGSVK 68
Query: 199 --------------IL-NNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTKLVL 242
IL NN +V W +II +N T ++T+
Sbjct: 69 ALFAEIQALTGGIDILVNNASIVPFVAWDDV-----DLDHWRKIIDVNLTGTFIVTRAGT 123
Query: 243 PRM-KLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYP 301
+M + G ++++ S + P + Y A K + F+++L EL +YNI + P
Sbjct: 124 DQMRAAGKAGRVISIASNTFFAGTPNMAAYVAAKGGVIGFTRALATELGKYNITANAVTP 183
Query: 302 GLVDTNMTK 310
GL++++ K
Sbjct: 184 GLIESDGVK 192
Score = 81.4 bits (202), Expect = 5e-18
Identities = 45/183 (24%), Positives = 65/183 (35%), Gaps = 24/183 (13%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+VTG+ GIGKA A LA +++ + A I + + I AD S+
Sbjct: 10 LVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASI----GKKARAIAADISDPG 65
Query: 62 QVYAHIEKELQDM-DVGILVNNVGIAPPHPTFR----KFDDISKEHLYNEITVNTGAPSQ 116
V A + + ILVNN I P + I I VN
Sbjct: 66 SVKALFAEIQALTGGIDILVNNASIVPFVAWDDVDLDHWRKI--------IDVNLTGTFI 117
Query: 117 MTRMLLPHM-KQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQL 175
+TR M K G ++ + S +P Y K V+ G +A A +L
Sbjct: 118 VTRAGTDQMRAAGKAGRVISIASNTFFAGTPNMAAYVAAKGGVI------GFTRALATEL 171
Query: 176 AKR 178
K
Sbjct: 172 GKY 174
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 87.9 bits (219), Expect = 2e-20
Identities = 32/199 (16%), Positives = 68/199 (34%), Gaps = 42/199 (21%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEY------------------- 198
V++TG GIGK + + + I ++ + A+
Sbjct: 5 VIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKERPNLFYFHGDVADPLTLKK 64
Query: 199 -------------IL-NNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTKLVLP 243
+L NN S + + ++ I+ + A +++L
Sbjct: 65 FVEYAMEKLQRIDVLVNNACRGSKGILSSL-----LYEEFDYILSVGLKAPYELSRLCRD 119
Query: 244 RMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYPGL 303
+ K +G I+N+ S + + P YA+ K + + +L L ++ V + PG
Sbjct: 120 ELI-KNKGRIINIASTRAFQSEPDSEAYASAKGGIVALTHALAMSLGP-DVLVNCIAPGW 177
Query: 304 VDTNMTKD-NSLTAKNIPL 321
++ ++ IP
Sbjct: 178 INVTEQQEFTQEDCAAIPA 196
Score = 81.4 bits (202), Expect = 5e-18
Identities = 35/181 (19%), Positives = 68/181 (37%), Gaps = 25/181 (13%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+VTG GIGK ++ + + I ++ D A E + D ++ L
Sbjct: 6 IVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKER-----PNLFYFHGDVADPL 60
Query: 62 QVYAHIEKELQDM-DVGILVNNVGIAPPHPTFR----KFDDISKEHLYNEITVNTGAPSQ 116
+ +E ++ + + +LVNN +FD I ++V AP +
Sbjct: 61 TLKKFVEYAMEKLQRIDVLVNNACRGSKGILSSLLYEEFDYI--------LSVGLKAPYE 112
Query: 117 MTRMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQLA 176
++R+ + + +G I+ + S P Y+ K +V + A A+ L
Sbjct: 113 LSRLCRDELI-KNKGRIINIASTRAFQSEPDSEAYASAKGGIV------ALTHALAMSLG 165
Query: 177 K 177
Sbjct: 166 P 166
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 88.1 bits (219), Expect = 3e-20
Identities = 39/186 (20%), Positives = 71/186 (38%), Gaps = 32/186 (17%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYILNNVG----------VVS 207
++TG+ GIG+A+A L + + L+ ++E + V
Sbjct: 10 ALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVAD 69
Query: 208 PDPIFRSFDAT----------------PSDQIWNEII-INAGATALMTKLVLPRM---KL 247
+ +F +++ W + + IN + T L L M
Sbjct: 70 QQQLRDTFRKVVDHFGRLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNG 129
Query: 248 KRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKS--LQAELYEYNIQVQYLYPGLVD 305
GII+NM SL+ P Y A+K + F++S L A L +++ + PG V+
Sbjct: 130 GEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVN 189
Query: 306 TNMTKD 311
T + +
Sbjct: 190 TAILES 195
Score = 77.7 bits (192), Expect = 2e-16
Identities = 41/185 (22%), Positives = 76/185 (41%), Gaps = 27/185 (14%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYD-VEVKIIQADFSEG 60
+VTG+ GIG+A+A L + + L+ L+ + +Q++ + IQ D ++
Sbjct: 11 LVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQ 70
Query: 61 LQVYAHIEKELQD---MDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQM 117
Q+ K + +D ILVNN G+ + ++ + +N +
Sbjct: 71 QQLRDTFRKVVDHFGRLD--ILVNNAGVNNE----KNWEKT--------LQINLVSVISG 116
Query: 118 TRMLLPHM-KQR--KRGMIVFVGSIVQVFKSPYFVNYSGTKAFVV-LTGSTDGIGKAYAI 173
T + L +M KQ + G+I+ + S+ + Y +K +V T S A A
Sbjct: 117 TYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRSA-----ALAA 171
Query: 174 QLAKR 178
L
Sbjct: 172 NLMNS 176
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 88.0 bits (219), Expect = 3e-20
Identities = 41/208 (19%), Positives = 72/208 (34%), Gaps = 49/208 (23%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYI------------------ 199
++TGS GIG+AYA LA+ +V+ + E + A+ I
Sbjct: 12 GIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPE 71
Query: 200 -------------------LNNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTK 239
+NN + + P + + + +N T+
Sbjct: 72 SAKAMADRTLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEY--YKKFMSVNLDGALWCTR 129
Query: 240 LVLPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYL 299
V +M + G IVN S ++ + Y K + ++ L EL NI++ +
Sbjct: 130 AVYKKMTKRGGGAIVNQSSTAAW---LYSNYYGLAKVGINGLTQQLSRELGGRNIRINAI 186
Query: 300 YPGLVDTNMTKDN------SLTAKNIPL 321
PG +DT + K +PL
Sbjct: 187 APGPIDTEANRTTTPKEMVDDIVKGLPL 214
Score = 83.7 bits (208), Expect = 8e-19
Identities = 42/178 (23%), Positives = 65/178 (36%), Gaps = 12/178 (6%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+VTGS GIG+AYA LA+ +V+ + A +I + D S+
Sbjct: 13 IVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVAD-GGTAISVAVDVSDPE 71
Query: 62 QVYAHIEKELQDM-DVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMTRM 120
A ++ L + + LVNN I I E+ ++VN TR
Sbjct: 72 SAKAMADRTLAEFGGIDYLVNNAAIFGG-MKLDFLLTIDPEYYKKFMSVNLDGALWCTRA 130
Query: 121 LLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQLAKR 178
+ M +R G IV S S Y K + G+ + + +L R
Sbjct: 131 VYKKMTKRGGGAIVNQSSTAAWLYSN---YYGLAKVGIN------GLTQQLSRELGGR 179
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural
genomics center for infectious disease, S brucellosis;
2.20A {Brucella melitensis biovar abortus}
Length = 261
Score = 88.0 bits (219), Expect = 3e-20
Identities = 41/193 (21%), Positives = 71/193 (36%), Gaps = 43/193 (22%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYI------------------ 199
++TG+ G G+ A + AK +V++ R + A I
Sbjct: 12 ALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEIGDAALAVAADISKEADVD 71
Query: 200 ----------------LNNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTKLVL 242
+NN G+ P + ++ I+ +N LMT ++
Sbjct: 72 AAVEAALSKFGKVDILVNNAGIGHKPQNAE--LVEPEE--FDRIVGVNVRGVYLMTSKLI 127
Query: 243 PRMKLKRRG----IIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQY 298
P K +I+N+ S + +P P L Y ATK ++ +K+L EL I+V
Sbjct: 128 PHFKENGAKGQECVILNVASTGAGRPRPNLAWYNATKGWVVSVTKALAIELAPAKIRVVA 187
Query: 299 LYPGLVDTNMTKD 311
L P +T +
Sbjct: 188 LNPVAGETPLLTT 200
Score = 76.8 bits (190), Expect = 3e-16
Identities = 53/186 (28%), Positives = 76/186 (40%), Gaps = 24/186 (12%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
++TG+ G G+ A AK +V++ R A EI + AD S+
Sbjct: 13 LITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEIGD----AALAVAADISKEA 68
Query: 62 QVYAHIEKELQD---MDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMT 118
V A +E L +D ILVNN GI + + + E + VN MT
Sbjct: 69 DVDAAVEAALSKFGKVD--ILVNNAGIGHK---PQNAELVEPEEFDRIVGVNVRGVYLMT 123
Query: 119 RMLLPHMKQRKRG----MIVFVGSIVQVFKSPYFVNYSGTKAFVV-LTGSTDGIGKAYAI 173
L+PH K+ +I+ V S P Y+ TK +VV +T KA AI
Sbjct: 124 SKLIPHFKENGAKGQECVILNVASTGAGRPRPNLAWYNATKGWVVSVT-------KALAI 176
Query: 174 QLAKRK 179
+LA K
Sbjct: 177 ELAPAK 182
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics; 1.95A
{Mycobacterium smegmatis}
Length = 266
Score = 88.0 bits (219), Expect = 3e-20
Identities = 30/195 (15%), Positives = 66/195 (33%), Gaps = 46/195 (23%)
Query: 158 VVLTG-STDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYIL---------------- 200
V++T + GIG A + ++V+ +L T + +
Sbjct: 25 VLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTS 84
Query: 201 ----------------------NNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALM 237
NN G+ P+ +D+ W+ ++ + +
Sbjct: 85 TEAVDALITQTVEKAGRLDVLVNNAGLGGQTPVVDM-----TDEEWDRVLNVTLTSVMRA 139
Query: 238 TKLVLPRM-KLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQV 296
T+ L + G+IVN S+ + ++YAA KA + ++ E E+ +++
Sbjct: 140 TRAALRYFRGVDHGGVIVNNASVLGWRAQHSQSHYAAAKAGVMALTRCSAIEAVEFGVRI 199
Query: 297 QYLYPGLVDTNMTKD 311
+ P + +
Sbjct: 200 NAVSPSIARHKFLEK 214
Score = 86.4 bits (215), Expect = 1e-19
Identities = 36/184 (19%), Positives = 72/184 (39%), Gaps = 21/184 (11%)
Query: 2 VVTG-STDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEG 60
+VT + GIG A D+V+ ++L +T +++ V+ + D +
Sbjct: 26 LVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTST 85
Query: 61 LQVYAHIEKELQDM-DVGILVNNVGIAPPHPTFR----KFDDISKEHLYNEITVNTGAPS 115
V A I + ++ + +LVNN G+ P ++D + + V +
Sbjct: 86 EAVDALITQTVEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRV--------LNVTLTSVM 137
Query: 116 QMTRMLLPHM-KQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQ 174
+ TR L + G+IV S++ +Y+ KA V+ + + AI+
Sbjct: 138 RATRAALRYFRGVDHGGVIVNNASVLGWRAQHSQSHYAAAKAGVM------ALTRCSAIE 191
Query: 175 LAKR 178
+
Sbjct: 192 AVEF 195
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 87.6 bits (218), Expect = 5e-20
Identities = 39/181 (21%), Positives = 70/181 (38%), Gaps = 15/181 (8%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
++TG++ GIGK A+ A+ + + +R L A+EI + I+ D ++
Sbjct: 36 LITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAG-VGGKALPIRCDVTQPD 94
Query: 62 QVYAHIEKELQDM-DVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMTRM 120
QV +++ ++ + I V N GI D+ E N +
Sbjct: 95 QVRGMLDQMTGELGGIDIAVCNAGIVSVQA----MLDMPLEEFQRIQDTNVTGVFLTAQA 150
Query: 121 LLPHMKQRKR-GMIVFVGSIV--QVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQLAK 177
M + G I+ S+ + +Y +KA VV + KA A++LA
Sbjct: 151 AARAMVDQGLGGTIITTASMSGHIINIPQQVSHYCTSKAAVV------HLTKAMAVELAP 204
Query: 178 R 178
Sbjct: 205 H 205
Score = 83.7 bits (208), Expect = 1e-18
Identities = 40/202 (19%), Positives = 74/202 (36%), Gaps = 50/202 (24%)
Query: 152 SGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYI------------ 199
SG +A + TG++ GIGK A+ A+ + + +R + L+ A+ I
Sbjct: 31 SGKRALI--TGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGGKALPIRC 88
Query: 200 -------------------------LNNVGVVSPDPIFRSFDATPSDQIWNEII-INAGA 233
+ N G+VS + D + + I N
Sbjct: 89 DVTQPDQVRGMLDQMTGELGGIDIAVCNAGIVSVQAML---DMPLEE--FQRIQDTNVTG 143
Query: 234 TALMTKLVLPRM-KLKRRGIIVNMGSLSS---RKPHPFLTNYAATKAYMELFSKSLQAEL 289
L + M G I+ S+S P +++Y +KA + +K++ EL
Sbjct: 144 VFLTAQAAARAMVDQGLGGTIITTASMSGHIINIPQQ-VSHYCTSKAAVVHLTKAMAVEL 202
Query: 290 YEYNIQVQYLYPGLVDTNMTKD 311
+ I+V + PG + T + +
Sbjct: 203 APHQIRVNSVSPGYIRTELVEP 224
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase,
short chain dehydrogenase/oxidoreductase, SD comamonas
testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A*
3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Length = 281
Score = 87.7 bits (218), Expect = 5e-20
Identities = 36/204 (17%), Positives = 71/204 (34%), Gaps = 37/204 (18%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEY------------------- 198
++TG G+G+A + + ++ +S E+L+
Sbjct: 8 ALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAHGGNAVGVVGDVRSLQDQK 67
Query: 199 --------------IL-NNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTKLVL 242
L N G+ D +++I +N K L
Sbjct: 68 RAAERCLAAFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACL 127
Query: 243 PRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYPG 302
P + + RG +V S + P+ Y ATK + + + EL +++V + PG
Sbjct: 128 PAL-VSSRGSVVFTISNAGFYPNGGGPLYTATKHAVVGLVRQMAFELAP-HVRVNGVAPG 185
Query: 303 LVDTNMTKDNSLTAKNIPLSIQPI 326
++T++ +SL +S P+
Sbjct: 186 GMNTDLRGPSSLGLSEQSISSVPL 209
Score = 78.0 bits (193), Expect = 1e-16
Identities = 32/181 (17%), Positives = 62/181 (34%), Gaps = 17/181 (9%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
++TG G+G+A + ++ ++ ++L + + D
Sbjct: 9 LITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAH----GGNAVGVVGDVRSLQ 64
Query: 62 QVYAHIEKELQD---MDVGILVNNVGIAPPHPTFRKFDDISKEHLYNE-ITVNTGAPSQM 117
E+ L +D L+ N GI + + +++ VN
Sbjct: 65 DQKRAAERCLAAFGKID--TLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHA 122
Query: 118 TRMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQLAK 177
+ LP + RG +VF S + + Y+ TK VV G+ + A +LA
Sbjct: 123 VKACLPALVSS-RGSVVFTISNAGFYPNGGGPLYTATKHAVV------GLVRQMAFELAP 175
Query: 178 R 178
Sbjct: 176 H 176
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 87.6 bits (218), Expect = 5e-20
Identities = 44/220 (20%), Positives = 77/220 (35%), Gaps = 57/220 (25%)
Query: 152 SGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLI-SRSMEKLKNTAEYI----------- 199
+ A V TG GIG A LA ++ + E + +
Sbjct: 28 ARPVAIV--TGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGARVIFLR 85
Query: 200 --------------------------LNNVGV--VSPDPIFRSFDATPSDQIWNEII-IN 230
+NN G+ + D P + ++ I+ +N
Sbjct: 86 ADLADLSSHQATVDAVVAEFGRIDCLVNNAGIASIVRDDFLD---LKPEN--FDTIVGVN 140
Query: 231 AGATALMTKLVLPRM---KLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQA 287
T T+ VL M + I+N+ S+S+ P +Y +KA + FS+ L
Sbjct: 141 LRGTVFFTQAVLKAMLASDARASRSIINITSVSAVMTSPERLDYCMSKAGLAAFSQGLAL 200
Query: 288 ELYEYNIQVQYLYPGLVDTNMTK------DNSLTAKNIPL 321
L E I V + PG++ ++MT D + + +P+
Sbjct: 201 RLAETGIAVFEVRPGIIRSDMTAAVSGKYDGLIESGLVPM 240
Score = 79.9 bits (198), Expect = 2e-17
Identities = 42/182 (23%), Positives = 73/182 (40%), Gaps = 14/182 (7%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLI-SRTLQKLNDTANEIRKQYDVEVKIIQADFSEG 60
+VTG GIG A LA D+ + + + E+ V ++AD ++
Sbjct: 33 IVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAEL-SGLGARVIFLRADLADL 91
Query: 61 LQVYAHIEKELQDM-DVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMTR 119
A ++ + + + LVNN GIA F D+ E+ + VN T+
Sbjct: 92 SSHQATVDAVVAEFGRIDCLVNNAGIASIVR--DDFLDLKPENFDTIVGVNLRGTVFFTQ 149
Query: 120 MLLPHM---KQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQLA 176
+L M R I+ + S+ V SP ++Y +KA + + A++LA
Sbjct: 150 AVLKAMLASDARASRSIINITSVSAVMTSPERLDYCMSKAGLA------AFSQGLALRLA 203
Query: 177 KR 178
+
Sbjct: 204 ET 205
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 86.4 bits (215), Expect = 1e-19
Identities = 40/212 (18%), Positives = 79/212 (37%), Gaps = 41/212 (19%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYI------------------ 199
VV+TG GIG +V+ + + + +
Sbjct: 12 VVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKT 71
Query: 200 ---------------LNNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTKLVLP 243
+NN G P + + T + + +++ +N T +TKL LP
Sbjct: 72 LVSETIRRFGRLDCVVNNAGHHPPP---QRPEETSAQG-FRQLLELNLLGTYTLTKLALP 127
Query: 244 RMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYPGL 303
++ K +G ++N+ SL Y ATK + +K+L + Y ++V + PG
Sbjct: 128 YLR-KSQGNVINISSLVGAIGQAQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGN 186
Query: 304 VDTNMTKDNSLTAKNIPLSIQPIL--YPNARL 333
+ T + ++ + + SI+ + P R+
Sbjct: 187 IWTPLWEELAALMPDPRASIREGMLAQPLGRM 218
Score = 70.7 bits (174), Expect = 3e-14
Identities = 36/181 (19%), Positives = 70/181 (38%), Gaps = 22/181 (12%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
VVTG GIG +V+ + E+ I D ++
Sbjct: 13 VVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELP-----GAVFILCDVTQED 67
Query: 62 QVYAHIEKELQD---MDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMT 118
V + + ++ +D +VNN G PP ++ ++ S + + +N +T
Sbjct: 68 DVKTLVSETIRRFGRLD--CVVNNAGHHPPP---QRPEETSAQGFRQLLELNLLGTYTLT 122
Query: 119 RMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVV-LTGSTDGIGKAYAIQLAK 177
++ LP++++ + G ++ + S+V V Y TK V +T KA A+ +
Sbjct: 123 KLALPYLRKSQ-GNVINISSLVGAIGQAQAVPYVATKGAVTAMT-------KALALDESP 174
Query: 178 R 178
Sbjct: 175 Y 175
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, three layer; 1.76A {Rhizobium etli}
Length = 273
Score = 86.5 bits (215), Expect = 1e-19
Identities = 37/189 (19%), Positives = 64/189 (33%), Gaps = 42/189 (22%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYI------------------ 199
V+TG+T GIG A A + + + R + L I
Sbjct: 32 AVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIGGGAVGIQADSANLAELD 91
Query: 200 ----------------LNNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTKLVL 242
N G S P+ + T +++ N + L
Sbjct: 92 RLYEKVKAEAGRIDVLFVNAGGGSMLPLG---EVTEEQ--YDDTFDRNVKGVLFTVQKAL 146
Query: 243 PRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYPG 302
P + R +V GS + P + YAA+KA + F+++ +L + I++ L PG
Sbjct: 147 PLLA--RGSSVVLTGSTAGSTGTPAFSVYAASKAALRSFARNWILDLKDRGIRINTLSPG 204
Query: 303 LVDTNMTKD 311
+T +
Sbjct: 205 PTETTGLVE 213
Score = 83.0 bits (206), Expect = 2e-18
Identities = 38/181 (20%), Positives = 66/181 (36%), Gaps = 21/181 (11%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
V+TG+T GIG A A + + R L+ EI IQAD +
Sbjct: 33 VITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI----GGGAVGIQADSANLA 88
Query: 62 QV---YAHIEKELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMT 118
++ Y ++ E +D +L N G P ++++E + N
Sbjct: 89 ELDRLYEKVKAEAGRID--VLFVNAGGGSMLP----LGEVTEEQYDDTFDRNVKGVLFTV 142
Query: 119 RMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQLAKR 178
+ LP + + +V GS +P F Y+ +KA + + + + L R
Sbjct: 143 QKALPLL--ARGSSVVLTGSTAGSTGTPAFSVYAASKAALR------SFARNWILDLKDR 194
Query: 179 K 179
Sbjct: 195 G 195
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET:
CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB:
2hsd_A*
Length = 254
Score = 86.0 bits (214), Expect = 1e-19
Identities = 42/204 (20%), Positives = 73/204 (35%), Gaps = 40/204 (19%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYI------------------ 199
V++TG G+G A Q +VL E+ TA +
Sbjct: 8 VIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQ 67
Query: 200 ----------------LNNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTKLVL 242
+NN G+ + + ++ + +++ IN + K V+
Sbjct: 68 RVVAYAREEFGSVDGLVNNAGISTGMFLET----ESVER-FRKVVEINLTGVFIGMKTVI 122
Query: 243 PRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYPG 302
P MK G IVN+ S + ++Y A+K + SK EL I+V ++PG
Sbjct: 123 PAMKDAGGGSIVNISSAAGLMGLALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPG 182
Query: 303 LVDTNMTKDNSLTAKNIPLSIQPI 326
+ T MT + + P+
Sbjct: 183 MTYTPMTAETGIRQGEGNYPNTPM 206
Score = 67.9 bits (167), Expect = 3e-13
Identities = 35/181 (19%), Positives = 63/181 (34%), Gaps = 21/181 (11%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
++TG G+G A + +VL ++ TA E+ + D +
Sbjct: 9 IITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL----GDAARYQHLDVTIEE 64
Query: 62 QVYAHIEKELQD---MDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMT 118
+ ++ +D LVNN GI+ + S E + +N
Sbjct: 65 DWQRVVAYAREEFGSVD--GLVNNAGISTGMF----LETESVERFRKVVEINLTGVFIGM 118
Query: 119 RMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVV-LTGSTDGIGKAYAIQLAK 177
+ ++P MK G IV + S + +Y +K V L+ K A++L
Sbjct: 119 KTVIPAMKDAGGGSIVNISSAAGLMGLALTSSYGASKWGVRGLS-------KLAAVELGT 171
Query: 178 R 178
Sbjct: 172 D 172
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR,
hydroxysteroid dehydrogenase, structural genomics, PSI;
HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP:
c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Length = 260
Score = 86.0 bits (214), Expect = 2e-19
Identities = 42/199 (21%), Positives = 70/199 (35%), Gaps = 40/199 (20%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYI------------------ 199
+++G G+G ++ + +V E+ K A +
Sbjct: 10 ALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWK 69
Query: 200 ----------------LNNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTKLVL 242
+NN G+++ I D ++ W I+ +N L + V+
Sbjct: 70 AAVDTAVTAFGGLHVLVNNAGILNIGTIE---DYALTE--WQRILDVNLTGVFLGIRAVV 124
Query: 243 PRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYPG 302
MK RG I+N+ S+ Y ATK + +KS EL I+V ++PG
Sbjct: 125 KPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPG 184
Query: 303 LVDTNMTKDNSLTAKNIPL 321
LV T MT L
Sbjct: 185 LVKTPMTDWVPEDIFQTAL 203
Score = 64.8 bits (159), Expect = 3e-12
Identities = 36/181 (19%), Positives = 69/181 (38%), Gaps = 21/181 (11%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+V+G G+G ++ + +V ++ A E+ + + D ++
Sbjct: 11 LVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELAD----AARYVHLDVTQPA 66
Query: 62 QVYAHIEKELQD---MDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMT 118
Q A ++ + + +LVNN GI +D + + VN
Sbjct: 67 QWKAAVDTAVTAFGGLH--VLVNNAGILNIGT----IEDYALTEWQRILDVNLTGVFLGI 120
Query: 119 RMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVV-LTGSTDGIGKAYAIQLAK 177
R ++ MK+ RG I+ + SI + + Y+ TK V LT K+ A++L
Sbjct: 121 RAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLT-------KSTALELGP 173
Query: 178 R 178
Sbjct: 174 S 174
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein]
reductase; PSI-biology, structural genomics, protein
structure initiati nysgrc; 2.70A {Sinorhizobium
meliloti}
Length = 283
Score = 86.1 bits (214), Expect = 2e-19
Identities = 48/201 (23%), Positives = 84/201 (41%), Gaps = 46/201 (22%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYI------------------ 199
++TG+ GIG+A A+ LA + + + R+ +++ A+ I
Sbjct: 31 ALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDEL 90
Query: 200 -------------------LNNVGVVSPD-PIFRSFDATPSDQIWNEII-INAGATALMT 238
+ N G+ PI D P + W+E I +N T L
Sbjct: 91 QMRNAVRDLVLKFGHLDIVVANAGINGVWAPID---DLKPFE--WDETIAVNLRGTFLTL 145
Query: 239 KLVLPRMKLKRRGIIVNMGSLS--SRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQV 296
L +P +K + G IV + S++ P T Y ATKA + L EL +++I+V
Sbjct: 146 HLTVPYLKQRGGGAIVVVSSINGTRTFTTPGATAYTATKAAQVAIVQQLALELGKHHIRV 205
Query: 297 QYLYPGLVDTNMTKDNSLTAK 317
+ PG ++TN++ + L +
Sbjct: 206 NAVCPGAIETNISDNTKLRHE 226
Score = 86.1 bits (214), Expect = 2e-19
Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 19/183 (10%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
++TG+ GIG+A A+ LA + + + RT ++ + A+EI + ++AD S+ L
Sbjct: 32 LITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGA-GGQAIALEADVSDEL 90
Query: 62 QVYAHIEKELQD---MDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMT 118
Q+ + + +D I+V N GI + DD+ I VN
Sbjct: 91 QMRNAVRDLVLKFGHLD--IVVANAGINGV---WAPIDDLKPFEWDETIAVNLRGTFLTL 145
Query: 119 RMLLPHMKQRKRGMIVFVGSIV--QVFKSPYFVNYSGTKAFVV-LTGSTDGIGKAYAIQL 175
+ +P++KQR G IV V SI + F +P Y+ TKA V + + A++L
Sbjct: 146 HLTVPYLKQRGGGAIVVVSSINGTRTFTTPGATAYTATKAAQVAIV-------QQLALEL 198
Query: 176 AKR 178
K
Sbjct: 199 GKH 201
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex,
oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi}
SCOP: c.2.1.2 PDB: 1mxf_A*
Length = 276
Score = 85.8 bits (213), Expect = 2e-19
Identities = 34/198 (17%), Positives = 61/198 (30%), Gaps = 28/198 (14%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLI-SRTLQKLNDTANEIRKQYDVEVKIIQADFSEG 60
V+TG IG + A+ L ++ +V+ + E+ + + D S
Sbjct: 15 VITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLS 74
Query: 61 LQVYAHIE-------KELQDMDVGILVNNVGIAPPHP-------TFRKFDDISKEHLYNE 106
+ E + D +LVNN P P +
Sbjct: 75 SSLLDCCEDIIDCSFRAFGRCD--VLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAEL 132
Query: 107 ITVNTGAPSQMTRMLLPHMKQ-----RKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLT 161
N AP + R + + +V + + P F Y+ K +
Sbjct: 133 FGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAMTDLPLPGFCVYTMAKHAL--- 189
Query: 162 GSTDGIGKAYAIQLAKRK 179
G+ +A A++LA R
Sbjct: 190 ---GGLTRAAALELAPRH 204
Score = 85.0 bits (211), Expect = 4e-19
Identities = 36/228 (15%), Positives = 62/228 (27%), Gaps = 60/228 (26%)
Query: 152 SGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLI-SRSMEKLKNTAEYIL---------- 200
A + TG IG + A++L ++ +V+ S + +
Sbjct: 10 ECPAAVI--TGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLC 67
Query: 201 --------------------------------NNVGVVSPDPIFRSFDATP------SDQ 222
NN P P+ D D
Sbjct: 68 KGDLSLSSSLLDCCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDA 127
Query: 223 IWNEII-INAGATALMTKLVLPRMKL-----KRRGIIVNMGSLSSRKPHPFLTNYAATKA 276
E+ NA A + + R R +VN+ + P P Y K
Sbjct: 128 QVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAMTDLPLPGFCVYTMAKH 187
Query: 277 YMELFSKSLQAELYEYNIQVQYLYPGLVDTNMTKDNSLTA---KNIPL 321
+ +++ EL +I+V + PGL + +PL
Sbjct: 188 ALGGLTRAAALELAPRHIRVNAVAPGLSLLPPAMPQETQEEYRRKVPL 235
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase,
oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei
brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A*
3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A*
3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A*
3jq6_A* ...
Length = 288
Score = 85.4 bits (212), Expect = 4e-19
Identities = 42/195 (21%), Positives = 71/195 (36%), Gaps = 24/195 (12%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRT-LQKLNDTANEIRKQYDVEVKIIQADFSEG 60
VVTG+ IG+A A++L + +V+ + A+E+ K+ + QAD +
Sbjct: 27 VVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNS 86
Query: 61 LQVYAHIEKELQDM-----DVGILVNNVGIAPPHPTFR-KFDDISKEHLYNE-----ITV 109
+ A E+ + +LVNN P P + +D S I
Sbjct: 87 NVLPASCEEIINSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGT 146
Query: 110 NTGAPSQMTRMLLPHMK------QRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGS 163
N AP +T K IV + + F Y+ K +V
Sbjct: 147 NAIAPFLLTMSFAQRQKGTNPNCTSSNLSIVNLCDAMVDQPCMAFSLYNMGKHALV---- 202
Query: 164 TDGIGKAYAIQLAKR 178
G+ ++ A++LA
Sbjct: 203 --GLTQSAALELAPY 215
Score = 85.0 bits (211), Expect = 6e-19
Identities = 42/222 (18%), Positives = 71/222 (31%), Gaps = 58/222 (26%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLI-SRSMEKLKNTAEYIL---------------- 200
V+TG+ IG+A A++L + +V+ S E + A+ +
Sbjct: 26 AVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTN 85
Query: 201 --------------------------NNVGVVSPDPIFR-----SFDATPSDQIWNEII- 228
NN P P+ + + + + E+I
Sbjct: 86 SNVLPASCEEIINSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIG 145
Query: 229 INAGATALMTKLVLPRMKL------KRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFS 282
NA A L+T R K IVN+ +P + Y K + +
Sbjct: 146 TNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIVNLCDAMVDQPCMAFSLYNMGKHALVGLT 205
Query: 283 KSLQAELYEYNIQVQYLYPGLVDTNMTKDNSLTAK---NIPL 321
+S EL Y I+V + PG+ + K +PL
Sbjct: 206 QSAALELAPYGIRVNGVAPGVSLLPVAMGEEEKDKWRRKVPL 247
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 84.9 bits (211), Expect = 4e-19
Identities = 36/181 (19%), Positives = 65/181 (35%), Gaps = 33/181 (18%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEY------------------- 198
V++TG++ GIG+A A + ++ +S
Sbjct: 11 VIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPGEAKYDHIECDVTNPDQVKASIDHIFK 70
Query: 199 ------IL-NNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTKLVLPRMKLKRR 250
+L NN G+ S I S W II +N +K +P M R
Sbjct: 71 EYGSISVLVNNAGIESYGKIESM-----SMGEWRRIIDVNLFGYYYASKFAIPYMIRSRD 125
Query: 251 GIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYPGLVDTNMTK 310
IVN+ S+ + + Y +K + +KS+ + Y ++ + P +DT + +
Sbjct: 126 PSIVNISSVQASIITKNASAYVTSKHAVIGLTKSIALD-YAPLLRCNAVCPATIDTPLVR 184
Query: 311 D 311
Sbjct: 185 K 185
Score = 71.4 bits (176), Expect = 2e-14
Identities = 38/185 (20%), Positives = 68/185 (36%), Gaps = 37/185 (20%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+VTG++ GIG+A A ++ I + + I+ D +
Sbjct: 12 IVTGASMGIGRAIAERFVDEGSKVID------------LSIHDPGEAKYDHIECDVTNPD 59
Query: 62 QVYAHIEKELQD---MDVGILVNNVGIAPPHPTFR----KFDDISKEHLYNEITVNTGAP 114
QV A I+ ++ + +LVNN GI ++ I I VN
Sbjct: 60 QVKASIDHIFKEYGSIS--VLVNNAGIESYGKIESMSMGEWRRI--------IDVNLFGY 109
Query: 115 SQMTRMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVV-LTGSTDGIGKAYAI 173
++ +P+M + + IV + S+ + Y +K V+ LT K+ A+
Sbjct: 110 YYASKFAIPYMIRSRDPSIVNISSVQASIITKNASAYVTSKHAVIGLT-------KSIAL 162
Query: 174 QLAKR 178
A
Sbjct: 163 DYAPL 167
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.69A {Xanthomonas campestris PV}
Length = 274
Score = 85.0 bits (211), Expect = 4e-19
Identities = 40/208 (19%), Positives = 70/208 (33%), Gaps = 55/208 (26%)
Query: 152 SGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLISRSME---KLKNTAEY---------- 198
SG F+ TG++ GIG A A++ A+ N+ + ++S KL T
Sbjct: 5 SGKTLFI--TGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGG 62
Query: 199 ------------------------------IL-NNVGVVSPDPIFRSFDATPSDQIWNEI 227
IL NN + TP + ++ +
Sbjct: 63 QGLALKCDIREEDQVRAAVAATVDTFGGIDILVNNASAIWLRGTLD----TPMKR-FDLM 117
Query: 228 I-INAGATALMTKLVLPRMKLKRRGIIVNMGSLSSRKPHPF--LTNYAATKAYMELFSKS 284
+NA + + + LP + I+ + S P + T Y K M L +
Sbjct: 118 QQVNARGSFVCAQACLPHLLQAPNPHILTLAPPPSLNPAWWGAHTGYTLAKMGMSLVTLG 177
Query: 285 LQAELYEYNIQVQYLYPG-LVDTNMTKD 311
L AE + + L+P ++ T+
Sbjct: 178 LAAEFGPQGVAINALWPRTVIATDAINM 205
Score = 75.7 bits (187), Expect = 7e-16
Identities = 34/196 (17%), Positives = 69/196 (35%), Gaps = 35/196 (17%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQ-------KLNDTANEIRKQYDVEVKIIQ 54
+TG++ GIG A A+ A+ ++ + +++ ++ A + + ++
Sbjct: 10 FITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAA-GGQGLALK 68
Query: 55 ADFSEGLQVYAHIEKELQD---MDVGILVNNVGIAPPHPTFR----KFDDISKEHLYNEI 107
D E QV A + + +D ILVNN T +FD +
Sbjct: 69 CDIREEDQVRAAVAATVDTFGGID--ILVNNASAIWLRGTLDTPMKRFDLM--------Q 118
Query: 108 TVNTGAPSQMTRMLLPHMKQRKRGMIVFVGSIVQVFKSPY--FVNYSGTKAFVV-LTGST 164
VN + LPH+ Q I+ + + + + Y+ K + +T
Sbjct: 119 QVNARGSFVCAQACLPHLLQAPNPHILTLAPPPSLNPAWWGAHTGYTLAKMGMSLVT--- 175
Query: 165 DGIGKAYAIQLAKRKM 180
A + + +
Sbjct: 176 ----LGLAAEFGPQGV 187
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold,
beta-alpha-beta motifs, open twisted sheet, A NADP,
oxidoreductase; 2.30A {Cladosporium herbarum} PDB:
3gdf_A
Length = 267
Score = 84.5 bits (210), Expect = 5e-19
Identities = 27/187 (14%), Positives = 61/187 (32%), Gaps = 24/187 (12%)
Query: 2 VVTGSTD--GIGKAYAIELAKRKMDLVLI-SRTLQKLNDTANEIRKQYDVEVKIIQADFS 58
VVTG++ G+G A A+ + + + Q + E+ K Y ++ K +
Sbjct: 24 VVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYGIKAKAYKCQVD 83
Query: 59 EGLQVYAHIEKELQDM-DVGILVNNVGIAPPHPTFR----KFDDISKEHLYNEITVNTGA 113
++ + D + + N G ++ + + V+
Sbjct: 84 SYESCEKLVKDVVADFGQIDAFIANAGATADSGILDGSVEAWNHV--------VQVDLNG 135
Query: 114 PSQMTRMLLPHMKQRKRGMIVFVGSIV--QVFKSPYFVNYSGTKAFVVLTGSTDGIGKAY 171
+ + H K+R G +V S+ +Y+ KA + + ++
Sbjct: 136 TFHCAKAVGHHFKERGTGSLVITASMSGHIANFPQEQTSYNVAKAGCI------HMARSL 189
Query: 172 AIQLAKR 178
A +
Sbjct: 190 ANEWRDF 196
Score = 67.2 bits (165), Expect = 6e-13
Identities = 37/209 (17%), Positives = 71/209 (33%), Gaps = 47/209 (22%)
Query: 158 VVLTGSTD--GIGKAYAIQLAKRKMNLVLI-SRSMEKLKNTAEYILNNVG---------V 205
VV+TG++ G+G A A+ + + + + + + + G V
Sbjct: 23 VVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYGIKAKAYKCQV 82
Query: 206 VSPDPIFRSFDATP------------------------SDQIWNEII-INAGATALMTKL 240
S + + S + WN ++ ++ T K
Sbjct: 83 DSYESCEKLVKDVVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKA 142
Query: 241 VLPRMKLKRRGIIVNMGSLSSR---KPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQ 297
V K + G +V S+S P T+Y KA ++SL E ++ +V
Sbjct: 143 VGHHFKERGTGSLVITASMSGHIANFPQE-QTSYNVAKAGCIHMARSLANEWRDF-ARVN 200
Query: 298 YLYPGLVDTNMTKDNSLTAKN-----IPL 321
+ PG +DT ++ + IP+
Sbjct: 201 SISPGYIDTGLSDFVPKETQQLWHSMIPM 229
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 83.1 bits (206), Expect = 6e-19
Identities = 27/183 (14%), Positives = 63/183 (34%), Gaps = 24/183 (13%)
Query: 158 VVLTGSTDGIGKAYAIQLAK---------RKMNLVLISRSMEKLKNTAE------YILNN 202
++L G++ +G A +L K ++ + +++ +K E I++
Sbjct: 6 ILLIGASGTLGSAVKERLEKKAEVITAGRHSGDVTVDITNIDSIKKMYEQVGKVDAIVSA 65
Query: 203 VGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTKLVLPRMKLKRRGIIVNMGSLSS 261
G + P+ + TP I G + L + + +G +
Sbjct: 66 TGSATFSPLT---ELTPEK--NAVTISSKLGGQINLVLLGIDSLN--DKGSFTLTTGIMM 118
Query: 262 RKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYPGLVDTNMTKDNSLTAKNIPL 321
P + A + F+KS E+ I++ + P +++ + K +P+
Sbjct: 119 EDPIVQGASAAMANGAVTAFAKSAAIEM-PRGIRINTVSPNVLEESWDKLEPFFEGFLPV 177
Query: 322 SIQ 324
Sbjct: 178 PAA 180
Score = 72.7 bits (179), Expect = 2e-15
Identities = 29/200 (14%), Positives = 68/200 (34%), Gaps = 38/200 (19%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
++ G++ +G A L K+ +++ R + D+ +
Sbjct: 7 LLIGASGTLGSAVKERLEKKA-EVITAGRHSGDV---------TVDI------TNIDSIK 50
Query: 62 QVYAHIEKELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMTRML 121
++Y + K V +V+ G A P +++ E I+ G + +
Sbjct: 51 KMYEQVGK------VDAIVSATGSATFSP----LTELTPEKNAVTISSKLGGQINLVLLG 100
Query: 122 LPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQLAKR-KM 180
+ + +G I+ + + V K+ AI++ + ++
Sbjct: 101 IDSL--NDKGSFTLTTGIMMEDPIVQGASAAMANGAV------TAFAKSAAIEMPRGIRI 152
Query: 181 NLV---LISRSMEKLKNTAE 197
N V ++ S +KL+ E
Sbjct: 153 NTVSPNVLEESWDKLEPFFE 172
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease, oxidoreductase; 2.50A {Mycobacterium marinum}
Length = 271
Score = 83.7 bits (208), Expect = 9e-19
Identities = 41/189 (21%), Positives = 67/189 (35%), Gaps = 38/189 (20%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYI------------------ 199
++TG+ GIG + LA+ +VL L A +
Sbjct: 14 AIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASVGRGAVHHVVDLTNEVSVR 73
Query: 200 ----------------LNNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTKLVL 242
NN P D W++ +NA T LM K +
Sbjct: 74 ALIDFTIDTFGRLDIVDNNAAHSDPAD--MLVTQMTVDV-WDDTFTVNARGTMLMCKYAI 130
Query: 243 PRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYPG 302
PR+ G IVN+ S ++ + T YA TKA +E ++ + + + ++ + PG
Sbjct: 131 PRLISAGGGAIVNISSATAHAAYDMSTAYACTKAAIETLTRYVATQYGRHGVRCNAIAPG 190
Query: 303 LVDTNMTKD 311
LV T +
Sbjct: 191 LVRTPRLEV 199
Score = 74.1 bits (183), Expect = 2e-15
Identities = 37/181 (20%), Positives = 63/181 (34%), Gaps = 19/181 (10%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
++TG+ GIG + LA+ +VL L A + D + +
Sbjct: 15 IITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASV----GRGAVHHVVDLTNEV 70
Query: 62 QVYAHIEKELQD---MDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMT 118
V A I+ + +D I+ NN + P ++ + + TVN M
Sbjct: 71 SVRALIDFTIDTFGRLD--IVDNNAAHSDPADM--LVTQMTVDVWDDTFTVNARGTMLMC 126
Query: 119 RMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVV-LTGSTDGIGKAYAIQLAK 177
+ +P + G IV + S Y+ TKA + LT + A Q +
Sbjct: 127 KYAIPRLISAGGGAIVNISSATAHAAYDMSTAYACTKAAIETLT-------RYVATQYGR 179
Query: 178 R 178
Sbjct: 180 H 180
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 83.3 bits (207), Expect = 1e-18
Identities = 45/210 (21%), Positives = 85/210 (40%), Gaps = 47/210 (22%)
Query: 150 NYSGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYILNNVGVVSPD 209
+ +G + + TG++ GIG A A L K +++ + EKLK+ + +N +
Sbjct: 11 DLTGKTSLI--TGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALKDNYTIE--- 65
Query: 210 PIFRSFDATPSDQI--------------------------------WNEII-INAGATAL 236
+ ++ ++++I IN A +
Sbjct: 66 ----VCNLANKEECSNLISKTSNLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFI 121
Query: 237 MTKLVLPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQV 296
+ + + +M KR G I+N+ S+ +P NY A+KA + +KSL E+ I V
Sbjct: 122 LNREAIKKMIQKRYGRIINISSIVGIAGNPGQANYCASKAGLIGMTKSLSYEVATRGITV 181
Query: 297 QYLYPGLVDTNMTKDNSLTAK-----NIPL 321
+ PG + ++MT + + IPL
Sbjct: 182 NAVAPGFIKSDMTDKLNEKQREAIVQKIPL 211
Score = 71.8 bits (177), Expect = 1e-14
Identities = 44/181 (24%), Positives = 78/181 (43%), Gaps = 25/181 (13%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
++TG++ GIG A A L K +++ +KL N ++ I + +
Sbjct: 18 LITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALKDN----YTIEVCNLANKE 73
Query: 62 QVYAHIEKELQDMDVGILVNNVGIAPPHPTFR----KFDDISKEHLYNEITVNTGAPSQM 117
+ I + ++D ILV N GI R FD + I +N A +
Sbjct: 74 ECSNLIS-KTSNLD--ILVCNAGITSDTLAIRMKDQDFDKV--------IDINLKANFIL 122
Query: 118 TRMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQLAK 177
R + M Q++ G I+ + SIV + +P NY +KA ++ G+ K+ + ++A
Sbjct: 123 NREAIKKMIQKRYGRIINISSIVGIAGNPGQANYCASKAGLI------GMTKSLSYEVAT 176
Query: 178 R 178
R
Sbjct: 177 R 177
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 83.1 bits (206), Expect = 1e-18
Identities = 20/184 (10%), Positives = 49/184 (26%), Gaps = 38/184 (20%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYI------------------ 199
V++ G +G R + I + + + +
Sbjct: 10 VLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASASVIVKMTDSFTEQADQVTAEVG 69
Query: 200 -----------LNNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTKLVLPRMKL 247
L G + + + + + + + + + L +K
Sbjct: 70 KLLGDQKVDAILCVAGGWAGGNAK----SKSLFKNCDLMWKQSIWTSTISSHLATKHLK- 124
Query: 248 KRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAEL--YEYNIQVQYLYPGLVD 305
G++ G+ ++ P + Y K + +SL + + P +D
Sbjct: 125 -EGGLLTLAGAKAALDGTPGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLD 183
Query: 306 TNMT 309
T M
Sbjct: 184 TPMN 187
Score = 75.4 bits (186), Expect = 6e-16
Identities = 26/163 (15%), Positives = 50/163 (30%), Gaps = 14/163 (8%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+V G +G R + I D V VK+ + +
Sbjct: 11 LVYGGRGALGSRCVQAFRARNWWVASI--------DVVENEEASASVIVKMTDSFTEQAD 62
Query: 62 QVYAHIEKELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMTRML 121
QV A + K L D V ++ G ++ + + + +
Sbjct: 63 QVTAEVGKLLGDQKVDAILCVAGGWAGGNAK---SKSLFKNCDLMWKQSIWTSTISSHLA 119
Query: 122 LPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVV-LTGS 163
H+ ++ G++ G+ + +P + Y K V L S
Sbjct: 120 TKHL--KEGGLLTLAGAKAALDGTPGMIGYGMAKGAVHQLCQS 160
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 83.8 bits (208), Expect = 1e-18
Identities = 41/191 (21%), Positives = 72/191 (37%), Gaps = 29/191 (15%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+VTG GIG A+ +A ++ +I R+ + ++ K++ V+ K Q D S
Sbjct: 18 IVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTD 77
Query: 62 QVYAHIEKELQDM-DVGILVNNVGIAPPHPTFR----KFDDISKEHLYNEITVN-TGAPS 115
V I++ D+ + L+ N G++ P F + VN G
Sbjct: 78 IVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFV--------YDVNVFGV-F 128
Query: 116 QMTRMLLPHMKQRKR-GMIVFVGSIV-------QVFKSPYFVNYSGTKAFVVLTGSTDGI 167
R + Q+++ G IV S+ + S V Y+ +KA +
Sbjct: 129 NTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSSLNGSLTQVFYNSSKAACS------NL 182
Query: 168 GKAYAIQLAKR 178
K A + A
Sbjct: 183 VKGLAAEWASA 193
Score = 78.4 bits (194), Expect = 7e-17
Identities = 43/214 (20%), Positives = 69/214 (32%), Gaps = 53/214 (24%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYILNNVGVVSPDPIFRSFDA 217
+++TG GIG A+ +A N+ +I RS E + GV + D
Sbjct: 17 IIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKT---KAYQCDV 73
Query: 218 TPSDQI------------------------------------WNEII-INAGATALMTKL 240
+ +D + + + +N +
Sbjct: 74 SNTDIVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRA 133
Query: 241 VLPRMKLKRR-GIIVNMGSLS-SRKPHPFL------TNYAATKAYMELFSKSLQAELYEY 292
V K++ G IV S+S L Y ++KA K L AE
Sbjct: 134 VAKLWLQKQQKGSIVVTSSMSSQIINQSSLNGSLTQVFYNSSKAACSNLVKGLAAEWASA 193
Query: 293 NIQVQYLYPGLVDTNMTKDNSLTAKN-----IPL 321
I+V L PG V+T+ T ++ IPL
Sbjct: 194 GIRVNALSPGYVNTDQTAHMDKKIRDHQASNIPL 227
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Length = 267
Score = 83.8 bits (208), Expect = 1e-18
Identities = 42/182 (23%), Positives = 67/182 (36%), Gaps = 19/182 (10%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLI-SRTLQKLNDTANEIRKQYDVEVKIIQADFSEG 60
+VTG++ GIG A A LA +V+ + + A +I + QAD S+
Sbjct: 31 IVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAA-GGKALTAQADVSDP 89
Query: 61 LQV---YAHIEKELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQM 117
V +A E+ +D +LVNN GI P + I VN
Sbjct: 90 AAVRRLFATAEEAFGGVD--VLVNNAGIMPLTT----IAETGDAVFDRVIAVNLKGTFNT 143
Query: 118 TRMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQLAK 177
R + R G I+ + + P + Y+ KA V + + + +L
Sbjct: 144 LREAAQRL--RVGGRIINMSTSQVGLLHPSYGIYAAAKAGV------EAMTHVLSKELRG 195
Query: 178 RK 179
R
Sbjct: 196 RD 197
Score = 79.1 bits (196), Expect = 5e-17
Identities = 47/215 (21%), Positives = 76/215 (35%), Gaps = 54/215 (25%)
Query: 152 SGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLI-SRSMEKLKNTAEYI----------- 199
+ A V TG++ GIG A A +LA +V+ + + A I
Sbjct: 26 TNKVAIV--TGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAGGKALTAQ 83
Query: 200 --------------------------LNNVGVVSPDPIFRSFDATPSDQIWNEII-INAG 232
+NN G++ I + D +++ +I +N
Sbjct: 84 ADVSDPAAVRRLFATAEEAFGGVDVLVNNAGIMPLTTIAET-----GDAVFDRVIAVNLK 138
Query: 233 ATALMTKLVLPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEY 292
T + R++ G I+NM + HP YAA KA +E + L EL
Sbjct: 139 GTFNTLREAAQRLR--VGGRIINMSTSQVGLLHPSYGIYAAAKAGVEAMTHVLSKELRGR 196
Query: 293 NIQVQYLYPGLVDTNMTKDN------SLTAKNIPL 321
+I V + PG T++ + AK PL
Sbjct: 197 DITVNAVAPGPTATDLFLEGKSDEVRDRFAKLAPL 231
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase,
PSI-2, P structure initiative; 2.30A {Agrobacterium
tumefaciens str}
Length = 259
Score = 83.3 bits (207), Expect = 1e-18
Identities = 37/180 (20%), Positives = 65/180 (36%), Gaps = 15/180 (8%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLI-SRTLQKLNDTANEIRKQYDVEVKIIQADFSEG 60
VV G+ IG+A AI A+ ++VL + + EI + I+AD +
Sbjct: 12 VVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIE-KLGRSALAIKADLTNA 70
Query: 61 LQVYAHIEKELQDM-DVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMTR 119
+V A I ++ LV+ G T ++ + + + VN + +
Sbjct: 71 AEVEAAISAAADKFGEIHGLVHVAGGLIARKT---IAEMDEAFWHQVLDVNLTSLFLTAK 127
Query: 120 MLLPHMKQRKRGMIVFVGSIVQVFKSPY-FVNYSGTKAFVVLTGSTDGIGKAYAIQLAKR 178
LP M K G IV S + Y+ +K V + A ++ +
Sbjct: 128 TALPKM--AKGGAIVTFSSQAGRDGGGPGALAYATSKGAV------MTFTRGLAKEVGPK 179
Score = 77.2 bits (191), Expect = 2e-16
Identities = 41/211 (19%), Positives = 73/211 (34%), Gaps = 55/211 (26%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLI-SRSMEKLKNTAEYI----------------- 199
+V+ G+ IG+A AI+ A+ N+VL + + E I
Sbjct: 11 IVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNA 70
Query: 200 --------------------LNNVGVVSPD-PIFRSFDATPSDQIWNEII-INAGATALM 237
++ G + I + W++++ +N + L
Sbjct: 71 AEVEAAISAAADKFGEIHGLVHVAGGLIARKTIAEM-----DEAFWHQVLDVNLTSLFLT 125
Query: 238 TKLVLPRMKLKRRGIIVNMGSLSSRK-PHPFLTNYAATKAYMELFSKSLQAELYEYNIQV 296
K LP+M + G IV S + R P YA +K + F++ L E+ I+V
Sbjct: 126 AKTALPKMA--KGGAIVTFSSQAGRDGGGPGALAYATSKGAVMTFTRGLAKEVGP-KIRV 182
Query: 297 QYLYPGLVDTNMTKDNSLT------AKNIPL 321
+ PG++ T + A L
Sbjct: 183 NAVCPGMISTTFHDTFTKPEVRERVAGATSL 213
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia
aquatica} SCOP: c.2.1.2
Length = 267
Score = 83.4 bits (207), Expect = 1e-18
Identities = 40/195 (20%), Positives = 75/195 (38%), Gaps = 46/195 (23%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYIL----------------- 200
V++TG G+G+A A++LA L L+ S E L+ + +L
Sbjct: 16 VLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSD 75
Query: 201 ----------------------NNVGVVSPD-PIFRSFDATPSDQIWNEII-INAGATAL 236
NN G+ P + +++++ IN L
Sbjct: 76 EAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESF-----TAAEFDKVVSINLRGVFL 130
Query: 237 MTKLVLPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQV 296
+ VL M+ + G++VN S+ + + YAA K + +++ E Y I++
Sbjct: 131 GLEKVLKIMREQGSGMVVNTASVGGIRGIGNQSGYAAAKHGVVGLTRNSAVEYGRYGIRI 190
Query: 297 QYLYPGLVDTNMTKD 311
+ PG + T M ++
Sbjct: 191 NAIAPGAIWTPMVEN 205
Score = 82.2 bits (204), Expect = 4e-18
Identities = 39/182 (21%), Positives = 72/182 (39%), Gaps = 17/182 (9%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQ-YDVEVKIIQADFSEG 60
++TG G+G+A A+ LA L L+ + + L + + + D EV AD S+
Sbjct: 17 LITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDE 76
Query: 61 LQVYAHIEKELQD---MDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQM 117
QV A++ + +D NN GI + + +++N
Sbjct: 77 AQVEAYVTATTERFGRID--GFFNNAGIEGK---QNPTESFTAAEFDKVVSINLRGVFLG 131
Query: 118 TRMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVV-LTGSTDGIGKAYAIQLA 176
+L M+++ GM+V S+ + Y+ K VV LT + A++
Sbjct: 132 LEKVLKIMREQGSGMVVNTASVGGIRGIGNQSGYAAAKHGVVGLT-------RNSAVEYG 184
Query: 177 KR 178
+
Sbjct: 185 RY 186
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold,
oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB:
3afm_A*
Length = 258
Score = 83.4 bits (207), Expect = 1e-18
Identities = 37/224 (16%), Positives = 74/224 (33%), Gaps = 56/224 (25%)
Query: 148 FVNYSGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLI-SRSMEKLKNTAEYI------- 199
F + G + + TGS+ GIG A A A+ + L ++ + T +
Sbjct: 2 FPDLKGKRVLI--TGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADGGDA 59
Query: 200 ------------------------------LNNVGVVSPDPIFRSFDATPSDQIWNEII- 228
+NN G + + + ++ ++
Sbjct: 60 AFFAADLATSEACQQLVDEFVAKFGGIDVLINNAGGLVGRKPL--PEIDDTF--YDAVMD 115
Query: 229 INAGATALMTKLVLPRMK-----LKRRGIIVNMGSLS-SRKPHPFLTNYAATKAYMELFS 282
N + + TK LP + + +++ GS++ P Y A KA++
Sbjct: 116 ANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTGGGPGAGLYGAAKAFLHNVH 175
Query: 283 KSLQAELYEYNIQVQYLYPGLVDTNMTKDNS-----LTAKNIPL 321
K+ + ++ + PG VDT D + + IP+
Sbjct: 176 KNWVDFHTKDGVRFNIVSPGTVDTAFHADKTQDVRDRISNGIPM 219
Score = 81.8 bits (203), Expect = 4e-18
Identities = 35/185 (18%), Positives = 65/185 (35%), Gaps = 18/185 (9%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQ-KLNDTANEIRKQYDVEVKIIQADFSEG 60
++TGS+ GIG A A A+ + L R +++T +R + AD +
Sbjct: 11 LITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRAD-GGDAAFFAADLATS 69
Query: 61 LQVYAHIEKELQDM-DVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMTR 119
+++ + + +L+NN G + +I + N + T+
Sbjct: 70 EACQQLVDEFVAKFGGIDVLINNAGGLVG---RKPLPEIDDTFYDAVMDANIRSVVMTTK 126
Query: 120 MLLPHMKQR-----KRGMIVFVGSIV-QVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAI 173
LPH+ + ++ GSI P Y KAF+ + K +
Sbjct: 127 FALPHLAAAAKASGQTSAVISTGSIAGHTGGGPGAGLYGAAKAFLH------NVHKNWVD 180
Query: 174 QLAKR 178
K
Sbjct: 181 FHTKD 185
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 84.9 bits (210), Expect = 1e-18
Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 15/169 (8%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQK-------LNDTANEIRKQYDVEVKIIQ 54
+TG++ GIGKA A++ AK ++V+ ++T Q + A EI +
Sbjct: 49 FITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAV-GGKALPCI 107
Query: 55 ADFSEGLQVYAHIEKELQDM-DVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGA 113
D + Q+ A +EK ++ + ILVNN T D + L + VNT
Sbjct: 108 VDVRDEQQISAAVEKAIKKFGGIDILVNNASAISLTNT----LDTPTKRLDLMMNVNTRG 163
Query: 114 PSQMTRMLLPHMKQRKRGMIVFVGSIVQVFKS--PYFVNYSGTKAFVVL 160
++ +P++K+ K I+ + + + Y+ K + +
Sbjct: 164 TYLASKACIPYLKKSKVAHILNISPPLNLNPVWFKQHCAYTIAKYGMSM 212
Score = 79.5 bits (196), Expect = 7e-17
Identities = 41/206 (19%), Positives = 75/206 (36%), Gaps = 56/206 (27%)
Query: 152 SGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEK-------LKNTAEYI----- 199
+G F+ TG++ GIGKA A++ AK N+V+ +++ + + AE I
Sbjct: 44 AGCTVFI--TGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGG 101
Query: 200 --------------------------------LNNVGVVSPDPIFRSFDATPSDQIWNEI 227
+NN +S TP+ + + +
Sbjct: 102 KALPCIVDVRDEQQISAAVEKAIKKFGGIDILVNNASAISLTNTLD----TPTKR-LDLM 156
Query: 228 I-INAGATALMTKLVLPRMKLKRRGIIVNMGSLSSRKPHPF--LTNYAATKAYMELFSKS 284
+ +N T L +K +P +K + I+N+ + P F Y K M ++
Sbjct: 157 MNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNLNPVWFKQHCAYTIAKYGMSMYVLG 216
Query: 285 LQAELYEYNIQVQYLYPG-LVDTNMT 309
+ E + I V L+P + T
Sbjct: 217 MAEEF-KGEIAVNALWPKTAIHTAAM 241
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 83.4 bits (207), Expect = 1e-18
Identities = 46/180 (25%), Positives = 76/180 (42%), Gaps = 14/180 (7%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+VTG+T GIG A L K + + + +R + L T E+R+ VE D
Sbjct: 26 LVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREA-GVEADGRTCDVRSVP 84
Query: 62 QVYAHIEKELQDM-DVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMTRM 120
++ A + ++ V +LVNN G T ++ E + + N ++T+
Sbjct: 85 EIEALVAAVVERYGPVDVLVNNAGRPGGGATAE----LADELWLDVVETNLTGVFRVTKQ 140
Query: 121 LLPH--MKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQLAKR 178
+L M +R G IV + S + YS +K VV G KA ++LA+
Sbjct: 141 VLKAGGMLERGTGRIVNIASTGGKQGVVHAAPYSASKHGVV------GFTKALGLELART 194
Score = 81.5 bits (202), Expect = 7e-18
Identities = 45/189 (23%), Positives = 74/189 (39%), Gaps = 35/189 (18%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYILNNVG--------VVSPD 209
++TG+T GIG A +L K + + + +R E L+ T + + V S
Sbjct: 25 ALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVP 84
Query: 210 PIFRSFDATP------------------------SDQIWNEII-INAGATALMTKLVLP- 243
I A +D++W +++ N +TK VL
Sbjct: 85 EIEALVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKA 144
Query: 244 -RMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYPG 302
M + G IVN+ S ++ Y+A+K + F+K+L EL I V + PG
Sbjct: 145 GGMLERGTGRIVNIASTGGKQGVVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPG 204
Query: 303 LVDTNMTKD 311
V+T M
Sbjct: 205 FVETPMAAS 213
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 83.8 bits (208), Expect = 2e-18
Identities = 37/183 (20%), Positives = 71/183 (38%), Gaps = 20/183 (10%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+VTG T GIG+ A A+ ++ + +R+ ++L+ E+ + V ++ D S+
Sbjct: 45 LVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPG 104
Query: 62 QVYAHIEKELQDM-DVGILVNNVGIAPPHPTFR----KFDDISKEHLYNEITVNTGAPSQ 116
+ + ++ N GI P + ++ + VN
Sbjct: 105 SCADAARTVVDAFGALDVVCANAGIFPEARLDTMTPEQLSEV--------LDVNVKGTVY 156
Query: 117 MTRMLLPHMKQRKRGMIVFVGSIV-QVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQL 175
+ L + RG ++ SI V P + +Y +KA + G + AI+L
Sbjct: 157 TVQACLAPLTASGRGRVILTSSITGPVTGYPGWSHYGASKAAQL------GFMRTAAIEL 210
Query: 176 AKR 178
A R
Sbjct: 211 APR 213
Score = 80.4 bits (199), Expect = 3e-17
Identities = 37/204 (18%), Positives = 75/204 (36%), Gaps = 40/204 (19%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYILNNVG---------VVSP 208
V++TG T GIG+ A A+ N+ + +RS +L + + V P
Sbjct: 44 VLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDP 103
Query: 209 DPIFRSFDA-----------------TP-------SDQIWNEII-INAGATALMTKLVLP 243
+ P + + +E++ +N T + L
Sbjct: 104 GSCADAARTVVDAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLA 163
Query: 244 RMKLKRRGIIVNMGSLS-SRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYPG 302
+ RG ++ S++ +P ++Y A+KA F ++ EL + V + PG
Sbjct: 164 PLTASGRGRVILTSSITGPVTGYPGWSHYGASKAAQLGFMRTAAIELAPRGVTVNAILPG 223
Query: 303 LVDTNMTK---DNSLTA--KNIPL 321
+ T + ++ ++IP+
Sbjct: 224 NILTEGLVDMGEEYISGMARSIPM 247
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics; 2.50A
{Mycobacterium thermoresistibile}
Length = 285
Score = 83.1 bits (206), Expect = 2e-18
Identities = 38/217 (17%), Positives = 72/217 (33%), Gaps = 56/217 (25%)
Query: 152 SGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEK-------LKNTAEYI----- 199
G F+ +G + GIG A A ++A N+ L+++S E + A+ I
Sbjct: 8 RGKTMFI--SGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGG 65
Query: 200 --------------------------------LNNVGVVSPDPIFRSFDATPSDQIWNEI 227
+NN ++ I P + ++ +
Sbjct: 66 QALPIVGDIRDGDAVAAAVAKTVEQFGGIDICVNNASAINLGSIEE----VPLKR-FDLM 120
Query: 228 I-INAGATALMTKLVLPRMKLKRRGIIVNMGS-LSSRKPHPFLTNYAATKAYMELFSKSL 285
I T +++ +P MK + I+ + + T Y K M L + +
Sbjct: 121 NGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLEPKWLRPTPYMMAKYGMTLCALGI 180
Query: 286 QAELYEYNIQVQYLYPG-LVDTNMTKDNSLTAKNIPL 321
EL + I L+P V T ++ L + +
Sbjct: 181 AEELRDAGIASNTLWPRTTVATAAVQN--LLGGDEAM 215
Score = 78.9 bits (195), Expect = 6e-17
Identities = 31/166 (18%), Positives = 61/166 (36%), Gaps = 18/166 (10%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQK-------LNDTANEIRKQYDVEVKIIQ 54
++G + GIG A A +A ++ L++++ + + A EI + + I
Sbjct: 13 FISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEA-GGQALPIV 71
Query: 55 ADFSEGLQVYAHIEKELQDM---DVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNT 111
D +G V A + K ++ D I VNN +++ + +
Sbjct: 72 GDIRDGDAVAAAVAKTVEQFGGID--ICVNNASAINLGSI----EEVPLKRFDLMNGIQV 125
Query: 112 GAPSQMTRMLLPHMKQRKRGMIVFVGSIV-QVFKSPYFVNYSGTKA 156
+++ +PHMK R I+ + + K Y K
Sbjct: 126 RGTYAVSQSCIPHMKGRDNPHILTLSPPIRLEPKWLRPTPYMMAKY 171
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc,
oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Length = 280
Score = 83.0 bits (206), Expect = 2e-18
Identities = 40/195 (20%), Positives = 65/195 (33%), Gaps = 45/195 (23%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYI------------------ 199
++TG++ GIG+A A+ A+ +V+ +R+ L + I
Sbjct: 11 AIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEA 70
Query: 200 -------------------LNNVGVVSPD-PIFRSFDATPSDQIWNEII-INAGATALMT 238
NN G + I + W E + N + L
Sbjct: 71 LHEALVELAVRRFGGLDTAFNNAGALGAMGEIS---SLSVEG--WRETLDTNLTSAFLAA 125
Query: 239 KLVLPRMKLKRRGIIVNMGSLS-SRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQ 297
K +P + G + S + YAA+KA + ++L EL I+V
Sbjct: 126 KYQVPAIAALGGGSLTFTSSFVGHTAGFAGVAPYAASKAGLIGLVQALAVELGARGIRVN 185
Query: 298 YLYPGLVDTNMTKDN 312
L PG DT N
Sbjct: 186 ALLPGGTDTPANFAN 200
Score = 78.0 bits (193), Expect = 1e-16
Identities = 38/184 (20%), Positives = 69/184 (37%), Gaps = 22/184 (11%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+VTG++ GIG+A A+ A+ +V+ +R L + +EI E + D +
Sbjct: 12 IVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGG-GGEAAALAGDVGDEA 70
Query: 62 QVYAHIEKELQ-----DMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQ 116
A +E ++ D NN G + +S E + N +
Sbjct: 71 LHEALVELAVRRFGGLD----TAFNNAGALGA---MGEISSLSVEGWRETLDTNLTSAFL 123
Query: 117 MTRMLLPHMKQRKRGMIVFVGSIV-QVFKSPYFVNYSGTKAFVV-LTGSTDGIGKAYAIQ 174
+ +P + G + F S V Y+ +KA ++ L +A A++
Sbjct: 124 AAKYQVPAIAALGGGSLTFTSSFVGHTAGFAGVAPYAASKAGLIGLV-------QALAVE 176
Query: 175 LAKR 178
L R
Sbjct: 177 LGAR 180
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: NAD; 2.10A {Mycobacterium
abscessus}
Length = 281
Score = 83.0 bits (206), Expect = 2e-18
Identities = 38/195 (19%), Positives = 73/195 (37%), Gaps = 34/195 (17%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISR------------TLQKLNDTANEIRKQYDVE 49
++TG G+G+++A+ LA+ D+ + R T L +T + K
Sbjct: 14 LITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKT-GRR 72
Query: 50 VKIIQADFSEGLQVYAHIEKELQDM-DVGILVNNVGIAPPHPTFR----KFDDISKEHLY 104
+ D + + + + + + + I + N GI+ ++D++
Sbjct: 73 CISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEV------ 126
Query: 105 NEITVN-TGAPSQMTRMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGS 163
I N TG + P M +R G IV V S++ + +Y +K V+
Sbjct: 127 --IGTNLTGT-FNTIAAVAPGMIKRNYGRIVTVSSMLGHSANFAQASYVSSKWGVI---- 179
Query: 164 TDGIGKAYAIQLAKR 178
G+ K A L
Sbjct: 180 --GLTKCAAHDLVGY 192
Score = 81.0 bits (201), Expect = 1e-17
Identities = 40/222 (18%), Positives = 76/222 (34%), Gaps = 57/222 (25%)
Query: 156 AFVVLTGSTDGIGKAYAIQLAKRKMNLVLISR------------SMEKLKNTAEYI---- 199
A + TG G+G+++A+ LA+ ++ + R + + L T +
Sbjct: 13 ALI--TGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTG 70
Query: 200 ---------------------------------LNNVGVVSPDPIFRSFDATPSDQIWNE 226
+ N G+ + + W+E
Sbjct: 71 RRCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGISTIALLPE-----VESAQWDE 125
Query: 227 II-INAGATALMTKLVLPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSL 285
+I N T V P M + G IV + S+ + +Y ++K + +K
Sbjct: 126 VIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHSANFAQASYVSSKWGVIGLTKCA 185
Query: 286 QAELYEYNIQVQYLYPGLVDTNMTKDNSLTAKNIPLSIQPIL 327
+L Y I V + PG ++T MT ++ + P +P L
Sbjct: 186 AHDLVGYGITVNAVAPGNIETPMTHNDFVFGTMRPDLEKPTL 227
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase;
protein-NADPH-active site inhibitor complex,
oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A
{Magnaporthe grisea} SCOP: c.2.1.2
Length = 274
Score = 83.0 bits (206), Expect = 2e-18
Identities = 42/183 (22%), Positives = 78/183 (42%), Gaps = 20/183 (10%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLI-SRTLQKLNDTANEIRKQYDVEVKIIQADFSEG 60
+ TG+ GIG+ AIEL +R +V+ + + + E+ K+ + IQAD S+
Sbjct: 25 LTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAEL-KKLGAQGVAIQADISKP 83
Query: 61 LQV---YAHIEKELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQM 117
+V + +D +++N G+ ++++E +NT +
Sbjct: 84 SEVVALFDKAVSHFGGLD--FVMSNSGMEVWCD----ELEVTQELFDKVFNLNTRGQFFV 137
Query: 118 TRMLLPHMKQRKRGMIVFVGSIVQVFKS-PYFVNYSGTKAFVVLTGSTDGIGKAYAIQLA 176
+ L H R+ G I+ SI V P Y+G+KA V +G +A+A+
Sbjct: 138 AQQGLKHC--RRGGRIILTSSIAAVMTGIPNHALYAGSKAAV------EGFCRAFAVDCG 189
Query: 177 KRK 179
+
Sbjct: 190 AKG 192
Score = 75.3 bits (186), Expect = 9e-16
Identities = 37/202 (18%), Positives = 72/202 (35%), Gaps = 49/202 (24%)
Query: 152 SGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLI-SRSMEKLKNTAEYI----------- 199
+G A TG+ GIG+ AI+L +R ++V+ S + + +
Sbjct: 20 AGKVALT--TGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQ 77
Query: 200 --------------------------LNNVGVVSPDPIFRSFDATPSDQIWNEII-INAG 232
++N G+ T ++++ +N
Sbjct: 78 ADISKPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELE---VTQEL--FDKVFNLNTR 132
Query: 233 ATALMTKLVLPRMKLKRRGIIVNMGSLSS-RKPHPFLTNYAATKAYMELFSKSLQAELYE 291
+ + L + R G I+ S+++ P YA +KA +E F ++ +
Sbjct: 133 GQFFVAQQGLKHCR--RGGRIILTSSIAAVMTGIPNHALYAGSKAAVEGFCRAFAVDCGA 190
Query: 292 YNIQVQYLYPGLVDTNMTKDNS 313
+ V + PG V T+M +NS
Sbjct: 191 KGVTVNCIAPGGVKTDMFDENS 212
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural
genomics, putative 3-oxoacyl-(acyl carrier protei
reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus
anthracis str}
Length = 255
Score = 82.2 bits (204), Expect = 3e-18
Identities = 45/186 (24%), Positives = 77/186 (41%), Gaps = 21/186 (11%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLI-SRTLQKLNDTANEIRKQYDVEVKIIQADFSEG 60
+VTG++ GIG+A A LA + + ++ +T EI+ I A+
Sbjct: 11 LVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSN-GGSAFSIGANLESL 69
Query: 61 LQV---YAHIEKELQDMDVG----ILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGA 113
V Y+ ++ ELQ+ IL+NN GI P ++ +++ ++VN A
Sbjct: 70 HGVEALYSSLDNELQNRTGSTKFDILINNAGIGPGAF----IEETTEQFFDRMVSVNAKA 125
Query: 114 PSQMTRMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAI 173
P + + L + R I+ + S P F+ YS TK + + + A
Sbjct: 126 PFFIIQQALSRL--RDNSRIINISSAATRISLPDFIAYSMTKGAI------NTMTFTLAK 177
Query: 174 QLAKRK 179
QL R
Sbjct: 178 QLGARG 183
Score = 78.0 bits (193), Expect = 8e-17
Identities = 41/191 (21%), Positives = 72/191 (37%), Gaps = 26/191 (13%)
Query: 149 VNYSGTKAF---VVLTGSTDGIGKAYAIQ--LAKRKMNLVLISRSMEKLKNTAEY----I 199
++Y K V ++G G A++I L L S +L+N I
Sbjct: 36 IHYGNRKEEAEETVYEIQSNG-GSAFSIGANLESLHGVEALYSSLDNELQNRTGSTKFDI 94
Query: 200 L-NNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTKLVLPRMKLKRRGIIVNMG 257
L NN G+ I + T ++ ++ +NA A + + L R++ I+N+
Sbjct: 95 LINNAGIGPGAFIE---ETTEQF--FDRMVSVNAKAPFFIIQQALSRLR--DNSRIINIS 147
Query: 258 SLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYPGLVDTNMTKD------ 311
S ++R P Y+ TK + + +L +L I V + PG V T+M +
Sbjct: 148 SAATRISLPDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFVKTDMNAELLSDPM 207
Query: 312 -NSLTAKNIPL 321
Sbjct: 208 MKQYATTISAF 218
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 82.2 bits (204), Expect = 3e-18
Identities = 62/211 (29%), Positives = 93/211 (44%), Gaps = 41/211 (19%)
Query: 150 NYSGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYILNNVG----- 204
G + V TGST GIG+A A +LA +++ S E+ K AE I N G
Sbjct: 4 KLQGKVSLV--TGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHG 61
Query: 205 ----VVSPDPIFRSFDATP------------------------SDQIWNEII-INAGATA 235
++S + I ++F+ S W E++ +N T
Sbjct: 62 VEMNLLSEESINKAFEEIYNLVDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTF 121
Query: 236 LMTKLVLPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQ 295
L+T+ L +M +R G IVN+ S+ + NY+ TKA + F+KSL EL N+
Sbjct: 122 LVTQNSLRKMIKQRWGRIVNISSVVGFTGNVGQVNYSTTKAGLIGFTKSLAKELAPRNVL 181
Query: 296 VQYLYPGLVDTNMTKDNSLTAK-----NIPL 321
V + PG ++T+MT S K IPL
Sbjct: 182 VNAVAPGFIETDMTAVLSEEIKQKYKEQIPL 212
Score = 77.5 bits (192), Expect = 1e-16
Identities = 52/183 (28%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+VTGST GIG+A A +LA +++ + ++ A EI +Y V+ ++ +
Sbjct: 11 LVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEE 70
Query: 62 QVYAHIEKELQDM-DVGILVNNVGIAPPHPTFR----KFDDISKEHLYNEITVNTGAPSQ 116
+ E+ + + ILVNN GI R ++++ + VN
Sbjct: 71 SINKAFEEIYNLVDGIDILVNNAGITRDKLFLRMSLLDWEEV--------LKVNLTGTFL 122
Query: 117 MTRMLLPHM-KQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQL 175
+T+ L M KQR G IV + S+V + VNYS TKA ++ G K+ A +L
Sbjct: 123 VTQNSLRKMIKQRW-GRIVNISSVVGFTGNVGQVNYSTTKAGLI------GFTKSLAKEL 175
Query: 176 AKR 178
A R
Sbjct: 176 APR 178
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site
inhibitor complex, dinucleotide binding fold,
oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea}
SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Length = 283
Score = 82.7 bits (205), Expect = 3e-18
Identities = 39/183 (21%), Positives = 76/183 (41%), Gaps = 20/183 (10%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLI-SRTLQKLNDTANEIRKQYDVEVKIIQADFSEG 60
+VTG+ GIG+ A+EL +R +++ + + + + I+K + ++A+
Sbjct: 33 LVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKN-GSDAACVKANVGVV 91
Query: 61 LQV---YAHIEKELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQM 117
+ + K +D I+ +N G+ D++ E T+NT +
Sbjct: 92 EDIVRMFEEAVKIFGKLD--IVCSNSGVVSFGH----VKDVTPEEFDRVFTINTRGQFFV 145
Query: 118 TRMLLPHMKQRKRGMIVFVGSIV-QVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQLA 176
R H+ G ++ +GSI Q P YSG+K + + + AI +A
Sbjct: 146 AREAYKHL--EIGGRLILMGSITGQAKAVPKHAVYSGSKGAI------ETFARCMAIDMA 197
Query: 177 KRK 179
+K
Sbjct: 198 DKK 200
Score = 75.0 bits (185), Expect = 1e-15
Identities = 39/202 (19%), Positives = 73/202 (36%), Gaps = 49/202 (24%)
Query: 152 SGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLI-SRSMEKLKNTAEYI----------- 199
G A V TG+ GIG+ A++L +R +++ + S E + I
Sbjct: 28 EGKVALV--TGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVK 85
Query: 200 --------------------------LNNVGVVSPDPIFRSFDATPSDQIWNEII-INAG 232
+N GVVS + TP + ++ + IN
Sbjct: 86 ANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKD---VTPEE--FDRVFTINTR 140
Query: 233 ATALMTKLVLPRMKLKRRGIIVNMGS-LSSRKPHPFLTNYAATKAYMELFSKSLQAELYE 291
+ + ++ G ++ MGS K P Y+ +K +E F++ + ++ +
Sbjct: 141 GQFFVAREAYKHLE--IGGRLILMGSITGQAKAVPKHAVYSGSKGAIETFARCMAIDMAD 198
Query: 292 YNIQVQYLYPGLVDTNMTKDNS 313
I V + PG + T+M
Sbjct: 199 KKITVNVVAPGGIKTDMYHAVC 220
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, protein structure initiati nysgrc; 2.30A
{Sinorhizobium meliloti}
Length = 271
Score = 82.6 bits (205), Expect = 3e-18
Identities = 44/181 (24%), Positives = 72/181 (39%), Gaps = 16/181 (8%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLI-SRTLQKLNDTANEIRKQYDVEVKIIQADFSEG 60
VTG + GIG A A LA + L ++ +EI + I+AD +
Sbjct: 35 FVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQA-GGRAVAIRADNRDA 93
Query: 61 LQVYAHIEKELQDMD-VGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMTR 119
+ I + ++ + + ILVN+ GI P ++ + + VN AP R
Sbjct: 94 EAIEQAIRETVEALGGLDILVNSAGIWHSAP----LEETTVADFDEVMAVNFRAPFVAIR 149
Query: 120 MLLPHMKQRKRGMIVFVGSIV-QVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQLAKR 178
H+ G I+ +GS + ++ P YS +KA + G+ K A L R
Sbjct: 150 SASRHL--GDGGRIITIGSNLAELVPWPGISLYSASKAAL------AGLTKGLARDLGPR 201
Query: 179 K 179
Sbjct: 202 G 202
Score = 81.8 bits (203), Expect = 5e-18
Identities = 44/214 (20%), Positives = 80/214 (37%), Gaps = 53/214 (24%)
Query: 152 SGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLI-SRSMEKLKNTAEYI----------- 199
+G AFV TG + GIG A A +LA + L + E+ + I
Sbjct: 30 AGKTAFV--TGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGGRAVAIR 87
Query: 200 --------------------------LNNVGVVSPDPIFRSFDATPSDQIWNEII-INAG 232
+N+ G+ P+ + + ++E++ +N
Sbjct: 88 ADNRDAEAIEQAIRETVEALGGLDILVNSAGIWHSAPLEET-----TVADFDEVMAVNFR 142
Query: 233 ATALMTKLVLPRMKLKRRGIIVNMGS-LSSRKPHPFLTNYAATKAYMELFSKSLQAELYE 291
A + + + G I+ +GS L+ P P ++ Y+A+KA + +K L +L
Sbjct: 143 APFVAIRSASRHLG--DGGRIITIGSNLAELVPWPGISLYSASKAALAGLTKGLARDLGP 200
Query: 292 YNIQVQYLYPGLVDTNMTKDNS----LTAKNIPL 321
I V ++PG DT+M + + I
Sbjct: 201 RGITVNIVHPGSTDTDMNPADGDHAEAQRERIAT 234
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 82.2 bits (204), Expect = 4e-18
Identities = 54/207 (26%), Positives = 87/207 (42%), Gaps = 37/207 (17%)
Query: 150 NYSGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYILNNVGVV--- 206
+G KA V TG+T GIG+A A + + L +KLK A + +V V
Sbjct: 24 KLTGRKALV--TGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLGKDVFVFSAN 81
Query: 207 --SPDPIFRSFDATP------------------------SDQIWNEII-INAGATALMTK 239
I + + DQ W++++ +N A + +T+
Sbjct: 82 LSDRKSIKQLAEVAEREMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTR 141
Query: 240 LVLPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYL 299
++ M +R G I+N+ S+ +P TNY A KA + FSK+L E+ NI V +
Sbjct: 142 ELIHSMMRRRYGRIINITSIVGVVGNPGQTNYCAAKAGLIGFSKALAQEIASRNITVNCI 201
Query: 300 YPGLVDTNMTKDNSLTAK-----NIPL 321
PG + + MT + K IP+
Sbjct: 202 APGFIKSAMTDKLNEKQKEAIMAMIPM 228
Score = 75.7 bits (187), Expect = 7e-16
Identities = 54/182 (29%), Positives = 81/182 (44%), Gaps = 23/182 (12%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+VTG+T GIG+A A + + L K EI +V + A+ S+
Sbjct: 31 LVTGATGGIGEAIARCFHAQGAIVGLHGTREDK----LKEIAADLGKDVFVFSANLSDRK 86
Query: 62 QVYAHIEKELQDM-DVGILVNNVGIAPPHPTFR----KFDDISKEHLYNEITVNTGAPSQ 116
+ E ++M + ILVNN GI R +DD+ + VN A S
Sbjct: 87 SIKQLAEVAEREMEGIDILVNNAGITRDGLFVRMQDQDWDDV--------LAVNLTAAST 138
Query: 117 MTRMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQLA 176
+TR L+ M +R+ G I+ + SIV V +P NY KA ++ G KA A ++A
Sbjct: 139 LTRELIHSMMRRRYGRIINITSIVGVVGNPGQTNYCAAKAGLI------GFSKALAQEIA 192
Query: 177 KR 178
R
Sbjct: 193 SR 194
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 82.2 bits (204), Expect = 4e-18
Identities = 47/202 (23%), Positives = 82/202 (40%), Gaps = 38/202 (18%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYILNNVG--------VVSPD 209
++TG+ GIG+ A LAK +++ ISR+ + + + I + V +
Sbjct: 47 ALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKE 106
Query: 210 PIFRSFDATP------------------------SDQIWNEII-INAGATALMTKLVLPR 244
I + + W +++ N + +T+ + R
Sbjct: 107 EISEVINKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKR 166
Query: 245 MKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYPGLV 304
M R G I+N+ S+ + NY+++KA + F+KSL EL NI V + PG +
Sbjct: 167 MINNRYGRIINISSIVGLTGNVGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFI 226
Query: 305 DTNMTKDNSLTAK-----NIPL 321
++MT S K NIP
Sbjct: 227 SSDMTDKISEQIKKNIISNIPA 248
Score = 79.2 bits (196), Expect = 6e-17
Identities = 54/183 (29%), Positives = 86/183 (46%), Gaps = 22/183 (12%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+VTG+ GIG+ A LAK ++ ISRT + + +EI K + E D S+
Sbjct: 48 LVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEI-KSFGYESSGYAGDVSKKE 106
Query: 62 QVYAHIEKELQDM-DVGILVNNVGIAPPHPTFR----KFDDISKEHLYNEITVNTGAPSQ 116
++ I K L + +V ILVNN GI + R +++D+ + N +
Sbjct: 107 EISEVINKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDV--------LRTNLNSLFY 158
Query: 117 MTRMLLPHM-KQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQL 175
+T+ + M R G I+ + SIV + + NYS +KA V+ G K+ A +L
Sbjct: 159 ITQPISKRMINNRY-GRIINISSIVGLTGNVGQANYSSSKAGVI------GFTKSLAKEL 211
Query: 176 AKR 178
A R
Sbjct: 212 ASR 214
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 81.2 bits (201), Expect = 4e-18
Identities = 29/184 (15%), Positives = 56/184 (30%), Gaps = 38/184 (20%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYI------------------ 199
V++ G +G A K ++ I S ++ +
Sbjct: 6 VIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQADSNILVDGNKNWTEQEQSILEQTA 65
Query: 200 -----------LNNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTKLVLPRMKL 247
G + + +I + ++A+ KL +K
Sbjct: 66 SSLQGSQVDGVFCVAGGWAGGSAS---SKDFVKN-ADLMIKQSVWSSAIAAKLATTHLK- 120
Query: 248 KRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAEL--YEYNIQVQYLYPGLVD 305
G++ G+ ++ P P + Y KA + + SL A+ N V + P +D
Sbjct: 121 -PGGLLQLTGAAAAMGPTPSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLD 179
Query: 306 TNMT 309
T M
Sbjct: 180 TPMN 183
Score = 76.2 bits (188), Expect = 3e-16
Identities = 23/163 (14%), Positives = 50/163 (30%), Gaps = 14/163 (8%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+V G +G A K ++ I + D+ + + + +
Sbjct: 7 IVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQADSNILVDGNKNW------TEQEQ-- 58
Query: 62 QVYAHIEKELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMTRML 121
+ LQ V + G ++ I + + + ++
Sbjct: 59 SILEQTASSLQGSQVDGVFCVAGGWAGGSAS---SKDFVKNADLMIKQSVWSSAIAAKLA 115
Query: 122 LPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVV-LTGS 163
H+ + G++ G+ + +P + Y KA V LT S
Sbjct: 116 TTHL--KPGGLLQLTGAAAAMGPTPSMIGYGMAKAAVHHLTSS 156
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU
SDR, fungi, oxidoreductase; HET: GOL; 1.48A
{Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A*
3itd_A
Length = 270
Score = 81.9 bits (203), Expect = 5e-18
Identities = 40/183 (21%), Positives = 73/183 (39%), Gaps = 20/183 (10%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLI-SRTLQKLNDTANEIRKQYDVEVKIIQADFSEG 60
+VTGS GIG A A+ L + +V+ + + + +EI+ + I+AD +
Sbjct: 22 LVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKAL-GSDAIAIKADIRQV 80
Query: 61 LQV---YAHIEKELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQM 117
++ + +D I V+N G+ D+++E ++NT +
Sbjct: 81 PEIVKLFDQAVAHFGHLD--IAVSNSGVVSFGH----LKDVTEEEFDRVFSLNTRGQFFV 134
Query: 118 TRMLLPHMKQRKRGMIVFVGSIV-QVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQLA 176
R H+ + G IV S + F P YSG+K V D + ++
Sbjct: 135 AREAYRHL--TEGGRIVLTSSNTSKDFSVPKHSLYSGSKGAV------DSFVRIFSKDCG 186
Query: 177 KRK 179
+K
Sbjct: 187 DKK 189
Score = 73.0 bits (180), Expect = 6e-15
Identities = 40/214 (18%), Positives = 69/214 (32%), Gaps = 49/214 (22%)
Query: 152 SGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLI-SRSMEKLKNTAEYI----------- 199
G A V TGS GIG A A+ L + +V+ + S + + I
Sbjct: 17 DGKVALV--TGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIK 74
Query: 200 --------------------------LNNVGVVSPDPIFRSFDATPSDQIWNEII-INAG 232
++N GVVS + D T + ++ + +N
Sbjct: 75 ADIRQVPEIVKLFDQAVAHFGHLDIAVSNSGVVSFGHLK---DVTEEE--FDRVFSLNTR 129
Query: 233 ATALMTKLVLPRMKLKRRGIIVNMGS-LSSRKPHPFLTNYAATKAYMELFSKSLQAELYE 291
+ + + G IV S S P + Y+ +K ++ F + + +
Sbjct: 130 GQFFVAREAYRHLT--EGGRIVLTSSNTSKDFSVPKHSLYSGSKGAVDSFVRIFSKDCGD 187
Query: 292 YNIQVQYLYPGLVDTNMTKDNSLTAKNIPLSIQP 325
I V + PG T+M + S S
Sbjct: 188 KKITVNAVAPGGTVTDMFHEVSHHYIPNGTSYTA 221
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 81.4 bits (202), Expect = 6e-18
Identities = 53/207 (25%), Positives = 92/207 (44%), Gaps = 37/207 (17%)
Query: 150 NYSGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYILNNVGVV--- 206
N G A V TG++ GIGKA A LA+R ++ + S + ++Y+ +N +
Sbjct: 6 NLEGKVALV--TGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKGMALN 63
Query: 207 --SPDPIFRSFDATP------------------------SDQIWNEII-INAGATALMTK 239
+P+ I A ++ W++I+ N + ++K
Sbjct: 64 VTNPESIEAVLKAITDEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSK 123
Query: 240 LVLPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYL 299
VL M KR+G I+N+GS+ + NYAA KA + F+KS+ E+ + V +
Sbjct: 124 AVLRGMMKKRQGRIINVGSVVGTMGNAGQANYAAAKAGVIGFTKSMAREVASRGVTVNTV 183
Query: 300 YPGLVDTNMTKDNSLTAK-----NIPL 321
PG ++T+MTK + + +P
Sbjct: 184 APGFIETDMTKALNDEQRTATLAQVPA 210
Score = 74.1 bits (183), Expect = 2e-15
Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 25/183 (13%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+VTG++ GIGKA A LA+R ++ + + A I K + + +
Sbjct: 13 LVTGASRGIGKAIAELLAERGAKVIGTATSESG----AQAISDYLGDNGKGMALNVTNPE 68
Query: 62 QVYAHIEKELQDM-DVGILVNNVGIAPPHPTFR----KFDDISKEHLYNEITVNTGAPSQ 116
+ A ++ + V ILVNN GI + R ++ DI + N + +
Sbjct: 69 SIEAVLKAITDEFGGVDILVNNAGITRDNLLMRMKEEEWSDI--------METNLTSIFR 120
Query: 117 MTRMLLPHM-KQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQL 175
+++ +L M K+R+ G I+ VGS+V + NY+ KA V+ G K+ A ++
Sbjct: 121 LSKAVLRGMMKKRQ-GRIINVGSVVGTMGNAGQANYAAAKAGVI------GFTKSMAREV 173
Query: 176 AKR 178
A R
Sbjct: 174 ASR 176
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A {Burkholderia
pseudomallei}
Length = 270
Score = 81.4 bits (202), Expect = 6e-18
Identities = 49/208 (23%), Positives = 80/208 (38%), Gaps = 40/208 (19%)
Query: 152 SGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYILNNVG------- 204
A V TG++ GIG+A A++LA+R ++ + + +
Sbjct: 27 DKQVAIV--TGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGLEGRGAVL 84
Query: 205 -VVSPDPIFRSFDATP------------------------SDQIWNEII-INAGATALMT 238
V + ++T D W+ +I N A ++
Sbjct: 85 NVNDATAVDALVESTLKEFGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLS 144
Query: 239 KLVLPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQY 298
+ VL M R G IVN+ S+ +P NYAA KA + +++L E+ I V
Sbjct: 145 RAVLRPMMKARGGRIVNITSVVGSAGNPGQVNYAAAKAGVAGMTRALAREIGSRGITVNC 204
Query: 299 LYPGLVDTNMTKDNSLTAK-----NIPL 321
+ PG +DT+MTK + IPL
Sbjct: 205 VAPGFIDTDMTKGLPQEQQTALKTQIPL 232
Score = 77.2 bits (191), Expect = 2e-16
Identities = 52/183 (28%), Positives = 86/183 (46%), Gaps = 22/183 (12%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+VTG++ GIG+A A+ELA+R ++ + T KQ +E + + ++
Sbjct: 32 IVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAF-KQAGLEGRGAVLNVNDAT 90
Query: 62 QVYAHIEKELQDM-DVGILVNNVGIAPPHPTFR----KFDDISKEHLYNEITVNTGAPSQ 116
V A +E L++ + +LVNN GI R ++D + I N A +
Sbjct: 91 AVDALVESTLKEFGALNVLVNNAGITQDQLAMRMKDDEWDAV--------IDTNLKAVFR 142
Query: 117 MTRMLLPHM-KQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQL 175
++R +L M K R G IV + S+V +P VNY+ KA V G+ +A A ++
Sbjct: 143 LSRAVLRPMMKARG-GRIVNITSVVGSAGNPGQVNYAAAKAGVA------GMTRALAREI 195
Query: 176 AKR 178
R
Sbjct: 196 GSR 198
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein,
NAD(P)-binding rossmann fold, csgid, oxidoreductase;
1.95A {Francisella tularensis subsp}
Length = 247
Score = 81.0 bits (201), Expect = 6e-18
Identities = 51/210 (24%), Positives = 78/210 (37%), Gaps = 40/210 (19%)
Query: 150 NYSGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYILNNVG----- 204
+ + A V TG++ GIG A LA + +V + S + +
Sbjct: 2 SLNEKVALV--TGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGFKARGL 59
Query: 205 ---VVSPDPIFRSFDATP------------------------SDQIWNEII-INAGATAL 236
+ + I F S+ W +I N +
Sbjct: 60 VLNISDIESIQNFFAEIKAENLAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFR 119
Query: 237 MTKLVLPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQV 296
M+K + M KR G I+++GS+ +P TNY A KA + FSKSL E+ NI V
Sbjct: 120 MSKECVRGMMKKRWGRIISIGSVVGSAGNPGQTNYCAAKAGVIGFSKSLAYEVASRNITV 179
Query: 297 QYLYPGLVDTNMTKDNSLTAK-----NIPL 321
+ PG + T+MT + K IP
Sbjct: 180 NVVAPGFIATDMTDKLTDEQKSFIATKIPS 209
Score = 78.3 bits (194), Expect = 5e-17
Identities = 42/183 (22%), Positives = 80/183 (43%), Gaps = 22/183 (12%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+VTG++ GIG A LA + +V + + N ++++ + + + + S+
Sbjct: 9 LVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKG-FKARGLVLNISDIE 67
Query: 62 QVYAHIEKELQDM-DVGILVNNVGIAPPHPTFR----KFDDISKEHLYNEITVNTGAPSQ 116
+ + + + ILVNN GI + R ++ + I N + +
Sbjct: 68 SIQNFFAEIKAENLAIDILVNNAGITRDNLMMRMSEDEWQSV--------INTNLSSIFR 119
Query: 117 MTRMLLPHM-KQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQL 175
M++ + M K+R G I+ +GS+V +P NY KA V+ G K+ A ++
Sbjct: 120 MSKECVRGMMKKRW-GRIISIGSVVGSAGNPGQTNYCAAKAGVI------GFSKSLAYEV 172
Query: 176 AKR 178
A R
Sbjct: 173 ASR 175
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 81.0 bits (201), Expect = 8e-18
Identities = 41/194 (21%), Positives = 78/194 (40%), Gaps = 45/194 (23%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYI------------------ 199
++TG T GIG A A + + +++ R + + A+ +
Sbjct: 9 AIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDG 68
Query: 200 ------------------LNNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTKL 240
+NN G+ + + T ++ W +++ +N T+L
Sbjct: 69 WTKLFDATEKAFGPVSTLVNNAGIAVNKSVE---ETTTAE--WRKLLAVNLDGVFFGTRL 123
Query: 241 VLPRMKLKRRG-IIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAEL--YEYNIQVQ 297
+ RMK K G I+NM S+ P L Y A+K + + SKS + +Y+++V
Sbjct: 124 GIQRMKNKGLGASIINMSSIEGFVGDPSLGAYNASKGAVRIMSKSAALDCALKDYDVRVN 183
Query: 298 YLYPGLVDTNMTKD 311
++PG + T + D
Sbjct: 184 TVHPGYIKTPLVDD 197
Score = 72.1 bits (178), Expect = 1e-14
Identities = 39/185 (21%), Positives = 69/185 (37%), Gaps = 20/185 (10%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
++TG T GIG A A + + +++ R A + ++ Q D S+
Sbjct: 10 IITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQF--FQHDSSDED 67
Query: 62 QV---YAHIEKELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMT 118
+ EK + LVNN GIA ++ + + VN T
Sbjct: 68 GWTKLFDATEKAFGPVS--TLVNNAGIAVNKS----VEETTTAEWRKLLAVNLDGVFFGT 121
Query: 119 RMLLPHMKQRKRGM-IVFVGSIVQVFKSPYFVNYSGTKAFVV-LTGSTDGIGKAYAIQLA 176
R+ + MK + G I+ + SI P Y+ +K V ++ K+ A+ A
Sbjct: 122 RLGIQRMKNKGLGASIINMSSIEGFVGDPSLGAYNASKGAVRIMS-------KSAALDCA 174
Query: 177 KRKMN 181
+ +
Sbjct: 175 LKDYD 179
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 81.0 bits (201), Expect = 9e-18
Identities = 39/195 (20%), Positives = 68/195 (34%), Gaps = 45/195 (23%)
Query: 152 SGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEY------------- 198
SG V TG+ GIG+A A+ +LV + R L
Sbjct: 5 SGKTILV--TGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAIAVVADVS 62
Query: 199 --------------------IL-NNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATAL 236
+ + GV + + W +++ +N + L
Sbjct: 63 DPKAVEAVFAEALEEFGRLHGVAHFAGVAHSALSWNL-----PLEAWEKVLRVNLTGSFL 117
Query: 237 MTKLVLPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQV 296
+ + ++ G +V GS++ L +YAA K + +++L EL ++V
Sbjct: 118 VARKAGEVLE--EGGSLVLTGSVAGLG-AFGLAHYAAGKLGVVGLARTLALELARKGVRV 174
Query: 297 QYLYPGLVDTNMTKD 311
L PGL+ T MT
Sbjct: 175 NVLLPGLIQTPMTAG 189
Score = 75.3 bits (186), Expect = 1e-15
Identities = 36/182 (19%), Positives = 75/182 (41%), Gaps = 26/182 (14%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+VTG+ GIG+A A+ LV + R + L + + + E + AD S+
Sbjct: 10 LVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAAL----EAEAIAVVADVSDPK 65
Query: 62 QVYAHIEKELQDM-DVGILVNNVGIAPPHPTFR----KFDDISKEHLYNEITVNTGAPSQ 116
V A + L++ + + + G+A ++ ++ + + VN
Sbjct: 66 AVEAVFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKV--------LRVNLTGSFL 117
Query: 117 MTRMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQLA 176
+ R + + G +V GS+ + + +Y+ K VV G+ + A++LA
Sbjct: 118 VARKAGEVL--EEGGSLVLTGSVAGL-GAFGLAHYAAGKLGVV------GLARTLALELA 168
Query: 177 KR 178
++
Sbjct: 169 RK 170
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase;
1.99A {Streptomyces coelicolor}
Length = 253
Score = 79.5 bits (197), Expect = 2e-17
Identities = 43/194 (22%), Positives = 75/194 (38%), Gaps = 33/194 (17%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYILNNVGVVSPDPIFRSFDA 217
V++TG GIG A A A + + RS E + + + + + +++
Sbjct: 24 VLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPPEGFLAVKCD---ITDTEQVEQAYKE 80
Query: 218 TP------------------------SDQIWNEII-INAGATALMTKLVLPRMKLKRRGI 252
S++ + ++ N T + K M ++G
Sbjct: 81 IEETHGPVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAKKGR 140
Query: 253 IVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYPGLVDTNMTKDN 312
+V + S+ NYAA+KA + F++SL EL NI + PG VDT+MTK
Sbjct: 141 VVLISSVVGLLGSAGQANYAASKAGLVGFARSLARELGSRNITFNVVAPGFVDTDMTKVL 200
Query: 313 SLTAK-----NIPL 321
+ + +PL
Sbjct: 201 TDEQRANIVSQVPL 214
Score = 65.3 bits (160), Expect = 2e-12
Identities = 36/182 (19%), Positives = 68/182 (37%), Gaps = 31/182 (17%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+VTG GIG A A A + + R+ + ++ D ++
Sbjct: 25 LVTGGNRGIGLAIARAFADAGDKVAITYRSGEPPE------------GFLAVKCDITDTE 72
Query: 62 QVYAHIEKELQDM-DVGILVNNVGIAPPHPTFR----KFDDISKEHLYNEITVNTGAPSQ 116
QV ++ + V +L+ N G+ R F + + N +
Sbjct: 73 QVEQAYKEIEETHGPVEVLIANAGVTKDQLLMRMSEEDFTSV--------VETNLTGTFR 124
Query: 117 MTRMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQLA 176
+ + M + K+G +V + S+V + S NY+ +KA +V G ++ A +L
Sbjct: 125 VVKRANRAMLRAKKGRVVLISSVVGLLGSAGQANYAASKAGLV------GFARSLARELG 178
Query: 177 KR 178
R
Sbjct: 179 SR 180
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, infectious D center for structural genomics of
infectious diseases; HET: NAD; 2.05A {Bacillus anthracis
str} PDB: 3i3o_A*
Length = 291
Score = 80.3 bits (199), Expect = 2e-17
Identities = 40/179 (22%), Positives = 79/179 (44%), Gaps = 14/179 (7%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLI-SRTLQKLNDTANEIRKQYDVEVKIIQADFSEG 60
++TG GIG+A +I AK ++ + N+T + K V+ ++ D S+
Sbjct: 51 LITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEK-EGVKCVLLPGDLSDE 109
Query: 61 LQVYAHIEKELQDM-DVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMTR 119
+++ ++ + + ILVNNV P + I+ E L +N + +T+
Sbjct: 110 QHCKDIVQETVRQLGSLNILVNNVAQQYPQQG---LEYITAEQLEKTFRINIFSYFHVTK 166
Query: 120 MLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQLAKR 178
L H+K + +I+ SIV + ++YS TK +V ++ + L ++
Sbjct: 167 AALSHLK--QGDVIINTASIVAYEGNETLIDYSATKGAIV------AFTRSLSQSLVQK 217
Score = 67.6 bits (166), Expect = 6e-13
Identities = 43/207 (20%), Positives = 77/207 (37%), Gaps = 48/207 (23%)
Query: 153 GTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLI-SRSMEKLKNTAEYI------------ 199
G + TG GIG+A +I AK N+ + T +Y+
Sbjct: 47 GKNVLI--TGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVKCVLLPG 104
Query: 200 -------------------------LNNVGVVSPDPIFRSFDATPSDQIWNEII-INAGA 233
+NNV P + ++Q + IN +
Sbjct: 105 DLSDEQHCKDIVQETVRQLGSLNILVNNVAQQYPQQ---GLEYITAEQ-LEKTFRINIFS 160
Query: 234 TALMTKLVLPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYN 293
+TK L +K + +I+N S+ + + + L +Y+ATK + F++SL L +
Sbjct: 161 YFHVTKAALSHLK--QGDVIINTASIVAYEGNETLIDYSATKGAIVAFTRSLSQSLVQKG 218
Query: 294 IQVQYLYPGLVDTNMTKDNSLTAKNIP 320
I+V + PG + T + +S K +
Sbjct: 219 IRVNGVAPGPIWTPLI-PSSFDEKKVS 244
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus} SCOP:
c.2.1.2
Length = 245
Score = 79.1 bits (196), Expect = 3e-17
Identities = 42/191 (21%), Positives = 69/191 (36%), Gaps = 49/191 (25%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEY------------------- 198
V++TG+ GIG+A AK LV L+ AE
Sbjct: 8 VLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERG 67
Query: 199 ------------IL-NNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTKLVLPR 244
+ + G+ + ++ + W ++ +N + L+ K
Sbjct: 68 FAEALAHLGRLDGVVHYAGITRDNFHWKM-----PLEDWELVLRVNLTGSFLVAKAASEA 122
Query: 245 MKLKRRGIIVNMGSLSSRKPHPFL-----TNYAATKAYMELFSKSLQAELYEYNIQVQYL 299
M+ K G IV S L NYAA+ A + +++L EL + I+V L
Sbjct: 123 MREKNPGSIVLTASRVY------LGNLGQANYAASMAGVVGLTRTLALELGRWGIRVNTL 176
Query: 300 YPGLVDTNMTK 310
PG ++T MT
Sbjct: 177 APGFIETRMTA 187
Score = 73.7 bits (182), Expect = 2e-15
Identities = 35/188 (18%), Positives = 68/188 (36%), Gaps = 38/188 (20%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
++TG+ GIG+A AK LV L + A + + D ++
Sbjct: 9 LITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV------GAHPVVMDVADPA 62
Query: 62 QVYAHIEKELQDM-DVGILVNNVGIAPPHPTFR----KFDDISKEHLYNEITVNTGAPSQ 116
V + L + + +V+ GI + ++ ++ + + VN
Sbjct: 63 SVERGFAEALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELV--------LRVNLTGSFL 114
Query: 117 MTRMLLPHMKQRKRGMIVFVGSIV------QVFKSPYFVNYSGTKAFVVLTGSTDGIGKA 170
+ + M+++ G IV S V Q NY+ + A VV G+ +
Sbjct: 115 VAKAASEAMREKNPGSIVLTASRVYLGNLGQ-------ANYAASMAGVV------GLTRT 161
Query: 171 YAIQLAKR 178
A++L +
Sbjct: 162 LALELGRW 169
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 78.7 bits (195), Expect = 4e-17
Identities = 42/194 (21%), Positives = 77/194 (39%), Gaps = 33/194 (17%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYILNNVGVVSPDPIFRSFDA 217
V++TG GIG A A +LA + + R K ++ V D + R+F A
Sbjct: 18 VLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLFGVEVD---VTDSDAVDRAFTA 74
Query: 218 TP------------------------SDQIWNEII-INAGATALMTKLVLPRMKLKRRGI 252
+++ + ++I N + + M+ + G
Sbjct: 75 VEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGR 134
Query: 253 IVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYPGLVDTNMTKDN 312
++ +GS+S NYAA+KA + ++S+ EL + N+ + PG +DT+MT+
Sbjct: 135 MIFIGSVSGLWGIGNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRAL 194
Query: 313 SLTAK-----NIPL 321
+ IP
Sbjct: 195 DERIQQGALQFIPA 208
Score = 64.9 bits (159), Expect = 2e-12
Identities = 38/182 (20%), Positives = 73/182 (40%), Gaps = 31/182 (17%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+VTG GIG A A LA + + + K + ++ D ++
Sbjct: 19 LVTGGNRGIGLAIAQRLAADGHKVA--------VTHRGSGAPK----GLFGVEVDVTDSD 66
Query: 62 QVYAHIEKELQDM-DVGILVNNVGIAPPHPTFR----KFDDISKEHLYNEITVNTGAPSQ 116
V + V +LV+N G++ R KF+ + I N +
Sbjct: 67 AVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKV--------INANLTGAFR 118
Query: 117 MTRMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQLA 176
+ + M++ K G ++F+GS+ ++ NY+ +KA V+ G+ ++ A +L+
Sbjct: 119 VAQRASRSMQRNKFGRMIFIGSVSGLWGIGNQANYAASKAGVI------GMARSIARELS 172
Query: 177 KR 178
K
Sbjct: 173 KA 174
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural
genomics O infectious diseases, 3-layer(ABA) sandwich,
rossmann fold; HET: NAD; 1.25A {Salmonella enterica
subsp}
Length = 294
Score = 79.1 bits (196), Expect = 5e-17
Identities = 40/183 (21%), Positives = 72/183 (39%), Gaps = 19/183 (10%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLI--SRTLQKLNDTANEIRKQYDVEVKIIQADFSE 59
+VTG GIG+A AI A+ D+ + + I + + ++ D S+
Sbjct: 53 LVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEE-CGRKAVLLPGDLSD 111
Query: 60 GLQVYAHIEKELQDM---DVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQ 116
+ + K + + D IL G P D++ E VN A
Sbjct: 112 ESFARSLVHKAREALGGLD--ILALVAGKQTAIPE---IKDLTSEQFQQTFAVNVFALFW 166
Query: 117 MTRMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQLA 176
+T+ +P + K I+ SI SP+ ++Y+ TKA ++ + A Q+A
Sbjct: 167 ITQEAIPLLP--KGASIITTSSIQAYQPSPHLLDYAATKAAIL------NYSRGLAKQVA 218
Query: 177 KRK 179
++
Sbjct: 219 EKG 221
Score = 69.5 bits (171), Expect = 1e-13
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 8/124 (6%)
Query: 199 IL-NNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTKLVLPRMKLKRRGIIVNM 256
IL G + P S+Q + + +N A +T+ +P + + I+
Sbjct: 131 ILALVAGKQTAIP---EIKDLTSEQ-FQQTFAVNVFALFWITQEAIPLLP--KGASIITT 184
Query: 257 GSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYPGLVDTNMTKDNSLTA 316
S+ + +P P L +YAATKA + +S+ L ++ E I+V + PG + T + T
Sbjct: 185 SSIQAYQPSPHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQTQ 244
Query: 317 KNIP 320
IP
Sbjct: 245 DKIP 248
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Length = 324
Score = 79.4 bits (196), Expect = 7e-17
Identities = 36/191 (18%), Positives = 65/191 (34%), Gaps = 40/191 (20%)
Query: 158 VVL-TGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYILNNVGVVSPDPIF-RSF 215
++L TG++ G G+ A LA + R + + + + +
Sbjct: 7 IILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLEL 66
Query: 216 DATPSDQIWNEI--II-----------NAG------------------------ATALMT 238
D + I II NAG +T +
Sbjct: 67 DVQSQVSVDRAIDQIIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVN 126
Query: 239 KLVLPRMKLKRRGIIVNMGSLSSRKP-HPFLTNYAATKAYMELFSKSLQAELYEYNIQVQ 297
+ LP M+ ++ G+++ + S SS P+L Y A KA M+ + EL + I+
Sbjct: 127 RAALPHMRRQKHGLLIWISSSSSAGGTPPYLAPYFAAKAAMDAIAVQYARELSRWGIETS 186
Query: 298 YLYPGLVDTNM 308
+ PG +
Sbjct: 187 IIVPGAFTSGT 197
Score = 73.6 bits (181), Expect = 7e-15
Identities = 40/183 (21%), Positives = 78/183 (42%), Gaps = 20/183 (10%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLN----DTANEIRKQYDVEVKIIQADF 57
++TG++ G G+ A LA + R + N + + DV+++ ++ D
Sbjct: 9 LITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDV 68
Query: 58 SEGLQVYAHIEKELQDM---DVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAP 114
+ V I++ + + DV L++N G P + + E +N +
Sbjct: 69 QSQVSVDRAIDQIIGEDGRIDV--LIHNAGHMVFGP----AEAFTPEQFAELYDINVLST 122
Query: 115 SQMTRMLLPHMKQRKRGMIVFVGSIV-QVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAI 173
++ R LPHM+++K G+++++ S PY Y KA + D I YA
Sbjct: 123 QRVNRAALPHMRRQKHGLLIWISSSSSAGGTPPYLAPYFAAKAAM------DAIAVQYAR 176
Query: 174 QLA 176
+L+
Sbjct: 177 ELS 179
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 78.4 bits (194), Expect = 7e-17
Identities = 39/211 (18%), Positives = 76/211 (36%), Gaps = 47/211 (22%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYILNNVGVVSPDP---IFRS 214
++TG+ GIG+A +++LA + + T + P
Sbjct: 10 ALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQ 69
Query: 215 FDATPSDQI-------------------------------------WNEII-INAGATAL 236
D + + W+++I +N T L
Sbjct: 70 ADVSEARAARCLLEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFL 129
Query: 237 MTKLVLPRM-KLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQ 295
+T+ + RG I+N+ S+ + + TNYAA+KA + +++ EL + I+
Sbjct: 130 VTQAAAQALVSNGCRGSIINISSIVGKVGNVGQTNYAASKAGVIGLTQTAARELGRHGIR 189
Query: 296 VQYLYPGLVDTNMTK---DNSLTA--KNIPL 321
+ PG + T MT+ + + IP+
Sbjct: 190 CNSVLPGFIATPMTQKVPQKVVDKITEMIPM 220
Score = 74.1 bits (183), Expect = 2e-15
Identities = 38/190 (20%), Positives = 66/190 (34%), Gaps = 27/190 (14%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQ------YDVEVKIIQA 55
+VTG+ GIG+A ++ LA + +T + QA
Sbjct: 11 LVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQA 70
Query: 56 DFSEGLQVYAHIEKELQDM--DVGILVNNVGIAPPHPTFR----KFDDISKEHLYNEITV 109
D SE +E+ ++V+ GI +D + I V
Sbjct: 71 DVSEARAARCLLEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKV--------IAV 122
Query: 110 NTGAPSQMTRMLLPHM-KQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIG 168
N +T+ + RG I+ + SIV + NY+ +KA V+ G+
Sbjct: 123 NLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKVGNVGQTNYAASKAGVI------GLT 176
Query: 169 KAYAIQLAKR 178
+ A +L +
Sbjct: 177 QTAARELGRH 186
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.95A {Mycobacterium avium}
Length = 299
Score = 78.8 bits (195), Expect = 8e-17
Identities = 40/221 (18%), Positives = 74/221 (33%), Gaps = 57/221 (25%)
Query: 156 AFVVLTGSTDGIGKAYAIQLAKRKMNLVLI------------SRSMEKLKNTAEYI---- 199
AF+ TG+ G G+++AI LA+ +++ I + + L T +
Sbjct: 31 AFI--TGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALG 88
Query: 200 ---------------------------------LNNVGVVSPDPIFRSFDATPSDQIWNE 226
L N + S + W +
Sbjct: 89 RRIIASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAALASEGTRL----NRMDPKTWRD 144
Query: 227 II-INAGATALMTKLVLPRMKLKRR-GIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKS 284
+I +N + ++ +P + +R G IV S+ + + NY A+K + ++
Sbjct: 145 MIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIGGLRGAENIGNYIASKHGLHGLMRT 204
Query: 285 LQAELYEYNIQVQYLYPGLVDTNMTKDNSLTAKNIPLSIQP 325
+ EL NI+V + P V T M + P P
Sbjct: 205 MALELGPRNIRVNIVCPSSVATPMLLNEPTYRMFRPDLENP 245
Score = 73.8 bits (182), Expect = 4e-15
Identities = 43/199 (21%), Positives = 80/199 (40%), Gaps = 40/199 (20%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLI------------SRTLQKLNDTANEIRKQYDVE 49
+TG+ G G+++AI LA+ D++ I T L +T ++
Sbjct: 32 FITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEAL-GRR 90
Query: 50 VKIIQADFSEGLQVYAHIEK---ELQDMDVGILVNNVGIAPPHPTFRK-----FDDISKE 101
+ Q D + + A ++ +L +D I++ N +A + + D+
Sbjct: 91 IIASQVDVRDFDAMQAAVDDGVTQLGRLD--IVLANAALASEGTRLNRMDPKTWRDM--- 145
Query: 102 HLYNEITVN-TGAPSQMTRMLLPHM-KQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVV 159
I VN GA R+ +PH+ ++ G IVF SI + + NY +K +
Sbjct: 146 -----IDVNLNGA-WITARVAIPHIMAGKRGGSIVFTSSIGGLRGAENIGNYIASKHGLH 199
Query: 160 LTGSTDGIGKAYAIQLAKR 178
G+ + A++L R
Sbjct: 200 ------GLMRTMALELGPR 212
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid,
3-ketoacyl-(acyl-carrier-protein) reductase, mycobac
paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium
subsp}
Length = 278
Score = 78.4 bits (194), Expect = 9e-17
Identities = 50/198 (25%), Positives = 78/198 (39%), Gaps = 39/198 (19%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLI------------SRTLQKLNDTANEIRKQYDVE 49
+TG+ G G+A+A+ LA D++ + T ++L T +
Sbjct: 17 FITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDI-GSR 75
Query: 50 VKIIQADFSEGLQVYAHIEK---ELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNE 106
+ QAD + + A ++ EL +D I+V N GIAP + D+
Sbjct: 76 IVARQADVRDRESLSAALQAGLDELGRLD--IVVANAGIAPMSAGDDGWHDV-------- 125
Query: 107 ITVN-TGAPSQMTRMLLPHM-KQRKRGMIVFVGSIV----QVFKSPYFVNYSGTKAFVVL 160
I VN TG ++ +P + KQ G IV + S P V Y K VV
Sbjct: 126 IDVNLTGV-YHTIKVAIPTLVKQGTGGSIVLISSSAGLAGVGSADPGSVGYVAAKHGVV- 183
Query: 161 TGSTDGIGKAYAIQLAKR 178
G+ + YA LA +
Sbjct: 184 -----GLMRVYANLLAGQ 196
Score = 69.5 bits (171), Expect = 1e-13
Identities = 37/227 (16%), Positives = 71/227 (31%), Gaps = 66/227 (29%)
Query: 156 AFVVLTGSTDGIGKAYAIQLAKRKMNLVLI------------SRSMEKLKNTAEYI---- 199
AF+ TG+ G G+A+A++LA +++ + + E+L T + +
Sbjct: 16 AFI--TGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIG 73
Query: 200 ---------------------------------LNNVGVVSPDPIFRSFDATPSDQIWNE 226
+ N G+ D W++
Sbjct: 74 SRIVARQADVRDRESLSAALQAGLDELGRLDIVVANAGIAPMSA---------GDDGWHD 124
Query: 227 II-INAGATALMTKLVLPRM-KLKRRGIIVNMGSLS----SRKPHPFLTNYAATKAYMEL 280
+I +N K+ +P + K G IV + S + P Y A K +
Sbjct: 125 VIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLAGVGSADPGSVGYVAAKHGVVG 184
Query: 281 FSKSLQAELYEYNIQVQYLYPGLVDTNMTKDNSLTAKNIPLSIQPIL 327
+ L I+V ++P V+T M + ++
Sbjct: 185 LMRVYANLLAGQMIRVNSIHPSGVETPMINNEFTREWLAKMAAATDT 231
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid,
structural genomics; 1.95A {Mycobacterium
thermoresistibile}
Length = 317
Score = 78.8 bits (195), Expect = 9e-17
Identities = 48/198 (24%), Positives = 84/198 (42%), Gaps = 39/198 (19%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLI------------SRTLQKLNDTANEIRKQYDVE 49
+TG+ G G+ +A+ LA+ D+V I + ++L +T + +Q
Sbjct: 50 FITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQ-GRR 108
Query: 50 VKIIQADFS--EGLQ-VYAHIEKELQDMDVGILVNNVGIAPPHPTFR----KFDDISKEH 102
+ QAD LQ V E +D ILV+NVGI+ ++ DI
Sbjct: 109 IIARQADVRDLASLQAVVDEALAEFGHID--ILVSNVGISNQGEVVSLTDQQWSDI---- 162
Query: 103 LYNEITVN-TGAPSQMTRMLLPHM-KQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVL 160
+ N GA R +LP M ++ + G ++FV S V + +P +Y+ +K V
Sbjct: 163 ----LQTNLIGA-WHACRAVLPSMIERGQGGSVIFVSSTVGLRGAPGQSHYAASKHGVQ- 216
Query: 161 TGSTDGIGKAYAIQLAKR 178
G+ + A ++ +
Sbjct: 217 -----GLMLSLANEVGRH 229
Score = 76.5 bits (189), Expect = 6e-16
Identities = 49/221 (22%), Positives = 88/221 (39%), Gaps = 58/221 (26%)
Query: 156 AFVVLTGSTDGIGKAYAIQLAKRKMNLVLI------------SRSMEKLKNTAEYI---- 199
AF+ TG+ G G+ +A++LA+ ++V I S E+LK T +
Sbjct: 49 AFI--TGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQG 106
Query: 200 ---------------------------------LNNVGVVSPDPIFRSFDATPSDQIWNE 226
++NVG+ + + +DQ W++
Sbjct: 107 RRIIARQADVRDLASLQAVVDEALAEFGHIDILVSNVGISNQGEVVS-----LTDQQWSD 161
Query: 227 II-INAGATALMTKLVLPRM-KLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKS 284
I+ N + VLP M + + G ++ + S + P ++YAA+K ++ S
Sbjct: 162 ILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVGLRGAPGQSHYAASKHGVQGLMLS 221
Query: 285 LQAELYEYNIQVQYLYPGLVDTNMTKDNSLTAKNIPLSIQP 325
L E+ +NI+V + PG V+T M + L +P P
Sbjct: 222 LANEVGRHNIRVNSVNPGAVNTEMALNEKLLKMFLPHLENP 262
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 77.5 bits (192), Expect = 1e-16
Identities = 55/209 (26%), Positives = 85/209 (40%), Gaps = 41/209 (19%)
Query: 152 SGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLI-SRSMEKLKNTAEYILNNVG------ 204
G A V TGS+ G+GKA A +L N+VL S + L TAE
Sbjct: 4 KGKTAIV--TGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAGINVVVAK 61
Query: 205 --VVSPDPIFRSFDATP------------------------SDQIWNEII-INAGATALM 237
V +P+ + S++ W++++ N + L
Sbjct: 62 GDVKNPEDVENMVKTAMDAFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLC 121
Query: 238 TKLVLPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQ 297
TK V M ++ G I+N+ S++ + NYAA+KA + F+KS+ E I
Sbjct: 122 TKAVSKIMLKQKSGKIINITSIAGIIGNAGQANYAASKAGLIGFTKSIAKEFAAKGIYCN 181
Query: 298 YLYPGLVDTNMTK---DNSLTA--KNIPL 321
+ PG++ T+MT D NIPL
Sbjct: 182 AVAPGIIKTDMTDVLPDKVKEMYLNNIPL 210
Score = 72.1 bits (178), Expect = 9e-15
Identities = 47/184 (25%), Positives = 80/184 (43%), Gaps = 23/184 (12%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLI-SRTLQKLNDTANEIRKQYDVEVKIIQADFSEG 60
+VTGS+ G+GKA A +L ++VL S L+ TA E K + V + + D
Sbjct: 9 IVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEF-KAAGINVVVAKGDVKNP 67
Query: 61 LQVYAHIEKELQDM-DVGILVNNVGIAPPHPTFR----KFDDISKEHLYNEITVNTGAPS 115
V ++ + + ILVNN GI + +DD+ + N +
Sbjct: 68 EDVENMVKTAMDAFGRIDILVNNAGITRDTLMLKMSEKDWDDV--------LNTNLKSAY 119
Query: 116 QMTRMLLPHM-KQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQ 174
T+ + M KQ+ G I+ + SI + + NY+ +KA ++ G K+ A +
Sbjct: 120 LCTKAVSKIMLKQKS-GKIINITSIAGIIGNAGQANYAASKAGLI------GFTKSIAKE 172
Query: 175 LAKR 178
A +
Sbjct: 173 FAAK 176
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics,
protein structure initiati nysgrc,oxidoreductase; 2.00A
{Rhizobium etli}
Length = 272
Score = 77.6 bits (192), Expect = 1e-16
Identities = 38/186 (20%), Positives = 71/186 (38%), Gaps = 20/186 (10%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVL-ISRTLQKLNDTANEIRKQYDVEVKIIQADFSEG 60
+VTG + GIG A A++ + + + + + I + E I D
Sbjct: 30 LVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITES-GGEAVAIPGDVGNA 88
Query: 61 LQV---YAHIEKELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQM 117
+ ++ ++++ +D LVNN GI D++S E + + VN
Sbjct: 89 ADIAAMFSAVDRQFGRLD--GLVNNAGIVDYPQR---VDEMSVERIERMLRVNVTGSILC 143
Query: 118 TRMLLPHMKQRKR---GMIVFVGSIVQVFKSP-YFVNYSGTKAFVVLTGSTDGIGKAYAI 173
+ M + G IV V S+ + S +V+Y+ +KA + D A
Sbjct: 144 AAEAVRRMSRLYSGQGGAIVNVSSMAAILGSATQYVDYAASKAAI------DTFTIGLAR 197
Query: 174 QLAKRK 179
++A
Sbjct: 198 EVAAEG 203
Score = 77.2 bits (191), Expect = 2e-16
Identities = 39/213 (18%), Positives = 77/213 (36%), Gaps = 53/213 (24%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVL-ISRSMEKLKNTAEYI----------------- 199
V++TG + GIG A A++ + + + + E I
Sbjct: 29 VLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITESGGEAVAIPGDVGNA 88
Query: 200 --------------------LNNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMT 238
+NN G+V + + ++ +N + L
Sbjct: 89 ADIAAMFSAVDRQFGRLDGLVNNAGIVDYPQRVD--EMSVER--IERMLRVNVTGSILCA 144
Query: 239 KLVLPRMKLKRR---GIIVNMGSLSSRKPHPF-LTNYAATKAYMELFSKSLQAELYEYNI 294
+ RM G IVN+ S+++ +YAA+KA ++ F+ L E+ I
Sbjct: 145 AEAVRRMSRLYSGQGGAIVNVSSMAAILGSATQYVDYAASKAAIDTFTIGLAREVAAEGI 204
Query: 295 QVQYLYPGLVDTNMTKDNSL------TAKNIPL 321
+V + PG+++T++ L A ++P+
Sbjct: 205 RVNAVRPGIIETDLHASGGLPDRAREMAPSVPM 237
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain
dehydrogenase/reductase, trypanosomatid, pterin salvage,
drug resistance; HET: NAP FE1; 2.61A {Leishmania major}
SCOP: c.2.1.2
Length = 328
Score = 78.6 bits (194), Expect = 1e-16
Identities = 31/213 (14%), Positives = 64/213 (30%), Gaps = 41/213 (19%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLI-SRTLQKLNDTANEIRKQYDVEVKIIQADFSEG 60
+VTG+ +G++ A L + L R+ + N + + + +QAD S
Sbjct: 50 LVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNV 109
Query: 61 LQVYAHIEKELQDMD------------------VGILVNNVGIAPPHPTFR----KFDDI 98
+ +LVNN P P R +
Sbjct: 110 ATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPC 169
Query: 99 SKEHLYNE------ITVNTGAPSQMTRMLLPHM------KQRKRGMIVFVGSIVQVFKSP 146
+ E N AP + + + + I+ + +
Sbjct: 170 VGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMTNQPLL 229
Query: 147 YFVNYSGTKAFVVLTGSTDGIGKAYAIQLAKRK 179
+ Y+ K + +G+ ++ A++LA +
Sbjct: 230 GYTIYTMAKGAL------EGLTRSAALELAPLQ 256
Score = 72.9 bits (179), Expect = 1e-14
Identities = 29/143 (20%), Positives = 48/143 (33%), Gaps = 20/143 (13%)
Query: 199 IL-NNVGVVSPDPIFR----SFDATP-----SDQIWNEII-INAGATALMTKLVLPRMKL 247
+L NN P P+ R + + ++ NA A + K R+
Sbjct: 145 VLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAG 204
Query: 248 ------KRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYP 301
I+NM + +P T Y K +E ++S EL I+V + P
Sbjct: 205 TPAKHRGTNYSIINMVDAMTNQPLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGP 264
Query: 302 GLVDTNMTKDNSLTAK---NIPL 321
GL ++ +PL
Sbjct: 265 GLSVLVDDMPPAVWEGHRSKVPL 287
Score = 30.9 bits (70), Expect = 0.54
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 158 VVL-TGSTDGIGKAYAIQLAKRKMNLVLI-SRSMEKLKNTAEYILNNVG 204
V L TG+ +G++ A L + L RS + + +
Sbjct: 48 VALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRP 96
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural
genomics, southea collaboratory for structural genomics,
secsg; 1.91A {Thermus thermophilus HB8}
Length = 245
Score = 77.1 bits (191), Expect = 2e-16
Identities = 44/204 (21%), Positives = 78/204 (38%), Gaps = 40/204 (19%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVL-ISRSMEKLKNTAEYILNNVG---------VVS 207
++TG++ GIG+A A++LA+ L + ++ EK + AE ++
Sbjct: 4 ALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLE 63
Query: 208 PDPIFRSFDATP------------------------SDQIWNEII-INAGATALMTKLVL 242
+ D+ W ++ N A T+ +
Sbjct: 64 AEAATALVHQAAEVLGGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAV 123
Query: 243 PRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYPG 302
M R G IVN+ S+ +P NY A+KA + F++++ E + I V + PG
Sbjct: 124 KLMMKARFGRIVNITSVVGILGNPGQANYVASKAGLIGFTRAVAKEYAQRGITVNAVAPG 183
Query: 303 LVDTNMTKDNSLTAK-----NIPL 321
++T MT+ K IP
Sbjct: 184 FIETEMTERLPQEVKEAYLKQIPA 207
Score = 75.2 bits (186), Expect = 7e-16
Identities = 47/184 (25%), Positives = 84/184 (45%), Gaps = 22/184 (11%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVL-ISRTLQKLNDTANEIRKQYDVEVKIIQADFSEG 60
++TG++ GIG+A A+ LA+ L + + +K + A E R++ V ++ A+ E
Sbjct: 5 LITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEA 64
Query: 61 LQVYAHIEKELQDM-DVGILVNNVGIAPPHPTFR----KFDDISKEHLYNEITVNTGAPS 115
A + + + + + LVNN GI R ++ + + N A
Sbjct: 65 EAATALVHQAAEVLGGLDTLVNNAGITRDTLLVRMKDEDWEAV--------LEANLSAVF 116
Query: 116 QMTRMLLPHM-KQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQ 174
+ TR + M K R G IV + S+V + +P NY +KA ++ G +A A +
Sbjct: 117 RTTREAVKLMMKARF-GRIVNITSVVGILGNPGQANYVASKAGLI------GFTRAVAKE 169
Query: 175 LAKR 178
A+R
Sbjct: 170 YAQR 173
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp}
Length = 277
Score = 77.6 bits (192), Expect = 2e-16
Identities = 45/224 (20%), Positives = 88/224 (39%), Gaps = 59/224 (26%)
Query: 156 AFVVLTGSTDGIGKAYAIQLAKRKMNLVLI-------------SRSMEKLKNTAEYI--- 199
AF+ TG+ G G+A+A+++A +++ + S + L T +
Sbjct: 14 AFI--TGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAA 71
Query: 200 ----------------------------------LNNVGVVSPDPIFRSFDATPSDQIWN 225
+ N GV +P + + +
Sbjct: 72 NRRIVAAVVDTRDFDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDD-----ITPEDFR 126
Query: 226 EII-INAGATALMTKLVLPRM-KLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSK 283
+++ IN T PR+ + R G I+ + S + K PF+ +Y A+K + ++
Sbjct: 127 DVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGMKMQPFMIHYTASKHAVTGLAR 186
Query: 284 SLQAELYEYNIQVQYLYPGLVDTNMTKDNSLTAKNIPLSIQPIL 327
+ AEL +++I+V ++PG V+T M + +TA + P L
Sbjct: 187 AFAAELGKHSIRVNSVHPGPVNTPMGSGDMVTAVGQAMETNPQL 230
Score = 76.4 bits (189), Expect = 4e-16
Identities = 40/195 (20%), Positives = 82/195 (42%), Gaps = 32/195 (16%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLI-------------SRTLQKLNDTANEIRKQYDV 48
+TG+ G G+A+A+ +A D++ + + L++T + +
Sbjct: 15 FITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAA-NR 73
Query: 49 EVKIIQADFSEGLQVYAHIE---KELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYN 105
+ D + ++ ++ L +D I+V N G+A P +DDI+ E +
Sbjct: 74 RIVAAVVDTRDFDRLRKVVDDGVAALGRLD--IIVANAGVAAPQA----WDDITPEDFRD 127
Query: 106 EITVN-TGAPSQMTRMLLPHMKQRKR-GMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGS 163
+ +N TG P + + R G I+ + S + P+ ++Y+ +K V
Sbjct: 128 VMDINVTGT-WNTVMAGAPRIIEGGRGGSIILISSAAGMKMQPFMIHYTASKHAVT---- 182
Query: 164 TDGIGKAYAIQLAKR 178
G+ +A+A +L K
Sbjct: 183 --GLARAFAAELGKH 195
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
csgid, center for structural genomics O infectious
diseases; 1.90A {Staphylococcus aureus subsp} PDB:
3sj7_A*
Length = 246
Score = 76.7 bits (190), Expect = 2e-16
Identities = 50/203 (24%), Positives = 80/203 (39%), Gaps = 39/203 (19%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVL-ISRSMEKLKNTAEYILNNVG--------VVSP 208
++TG++ GIG++ A+QLA+ N+ + + S EK + E I V
Sbjct: 7 ALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADA 66
Query: 209 DPIFRSFDATP------------------------SDQIWNEII-INAGATALMTKLVLP 243
D + +Q W+++I N + P
Sbjct: 67 DEVKAMIKEVVSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATP 126
Query: 244 RMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYPGL 303
+M +R G I+N+ S+ +P NY ATKA + +KS EL I V + PG
Sbjct: 127 QMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGF 186
Query: 304 VDTNMTKDNSLTAK-----NIPL 321
+ ++MT S K IPL
Sbjct: 187 IVSDMTDALSDELKEQMLTQIPL 209
Score = 72.9 bits (180), Expect = 5e-15
Identities = 52/184 (28%), Positives = 90/184 (48%), Gaps = 23/184 (12%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVL-ISRTLQKLNDTANEIRKQYDVEVKIIQADFSEG 60
+VTG++ GIG++ A++LA+ ++ + + + +K EI K V+ IQA+ ++
Sbjct: 8 LVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEI-KAKGVDSFAIQANVADA 66
Query: 61 LQVYAHIEKELQDM-DVGILVNNVGIAPPHPTFR----KFDDISKEHLYNEITVNTGAPS 115
+V A I++ + + +LVNN GI + R ++DD+ I N
Sbjct: 67 DEVKAMIKEVVSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDV--------IDTNLKGVF 118
Query: 116 QMTRMLLPHM-KQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQ 174
+ P M +QR G I+ + S+V +P NY TKA V+ G+ K+ A +
Sbjct: 119 NCIQKATPQMLRQRS-GAIINLSSVVGAVGNPGQANYVATKAGVI------GLTKSAARE 171
Query: 175 LAKR 178
LA R
Sbjct: 172 LASR 175
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 77.7 bits (191), Expect = 2e-16
Identities = 34/169 (20%), Positives = 59/169 (34%), Gaps = 32/169 (18%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
VVTG GIG +L+ + +VL R + K ++ +++ V Q D ++ +
Sbjct: 16 VVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPI 75
Query: 62 QV----YAHIEKELQDMDVGILVNNVGIAPPHPTFRKFD--------------------- 96
I+ +D ILVNN G+A +F
Sbjct: 76 ATMSSLADFIKTHFGKLD--ILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPE 133
Query: 97 -----DISKEHLYNEITVNTGAPSQMTRMLLPHMKQRKRGMIVFVGSIV 140
+ E + +N +T +L+P ++ IV V S
Sbjct: 134 AQELMSETYELAEECLKINYNGVKSVTEVLIPLLQLSDSPRIVNVSSST 182
Score = 60.7 bits (147), Expect = 1e-10
Identities = 42/263 (15%), Positives = 69/263 (26%), Gaps = 110/263 (41%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYI------------------ 199
V+TG GIG QL+ + +VL R + K E +
Sbjct: 15 AVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDP 74
Query: 200 ---------------------LNNVGVVSPDPIFRSFDATPS------------------ 220
+NN GV F A S
Sbjct: 75 IATMSSLADFIKTHFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEA 134
Query: 221 --------DQIWNEIIINAGATALMTKLVLPRMKLKRRGIIVNMGS-------------- 258
+ + IN +T++++P ++L IVN+ S
Sbjct: 135 QELMSETYELAEECLKINYNGVKSVTEVLIPLLQLSDSPRIVNVSSSTGSLKYVSNETAL 194
Query: 259 -----------------------------LSSRKPHPFLTNYAATKAYMELFSKSLQAEL 289
+ + F Y +KA + +++ L ++
Sbjct: 195 EILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGAAYTTSKACLNAYTRVLANKI 254
Query: 290 YEYNIQVQYLYPGLVDTNMTKDN 312
QV + PGLV T M
Sbjct: 255 --PKFQVNCVCPGLVKTEMNYGI 275
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann
fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus}
SCOP: c.2.1.2 PDB: 2cdh_G
Length = 244
Score = 76.4 bits (189), Expect = 3e-16
Identities = 50/203 (24%), Positives = 80/203 (39%), Gaps = 39/203 (19%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVL-ISRSMEKLKNTAEYILNNVG--------VVSP 208
VV+TG++ GIGKA A+ L K +++ +RS + + ++ I G V
Sbjct: 4 VVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKE 63
Query: 209 DPIFRSFDATP------------------------SDQIWNEII-INAGATALMTKLVLP 243
+ W+E+I +N L T+
Sbjct: 64 ADVEAMMKTAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATK 123
Query: 244 RMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYPGL 303
M KR+G I+N+ S+ + NYAA KA + FSK+ E NI V + PG
Sbjct: 124 IMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGF 183
Query: 304 VDTNMTK---DNSLTA--KNIPL 321
+ ++MT ++ IPL
Sbjct: 184 IASDMTAKLGEDMEKKILGTIPL 206
Score = 72.1 bits (178), Expect = 7e-15
Identities = 47/184 (25%), Positives = 83/184 (45%), Gaps = 23/184 (12%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVL-ISRTLQKLNDTANEIRKQYDVEVKIIQADFSEG 60
VVTG++ GIGKA A+ L K +++ +R+ + + + +I + Y + D S+
Sbjct: 5 VVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQI-EAYGGQAITFGGDVSKE 63
Query: 61 LQVYAHIEKELQDM-DVGILVNNVGIAPPHPTFR----KFDDISKEHLYNEITVNTGAPS 115
V A ++ + + ++VNN GI R ++D++ I +N
Sbjct: 64 ADVEAMMKTAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEV--------IDLNLTGVF 115
Query: 116 QMTRMLLPHM-KQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQ 174
T+ M K+RK G I+ + S+V + + NY+ KA V+ G K A +
Sbjct: 116 LCTQAATKIMMKKRK-GRIINIASVVGLIGNIGQANYAAAKAGVI------GFSKTAARE 168
Query: 175 LAKR 178
A R
Sbjct: 169 GASR 172
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl
carrier protein) reductase, short-chain
dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Length = 246
Score = 76.4 bits (189), Expect = 3e-16
Identities = 55/209 (26%), Positives = 83/209 (39%), Gaps = 41/209 (19%)
Query: 152 SGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVL-ISRSMEKLKNTAEYILNNVG------ 204
G A V TG++ GIG+A AI LAK+ N+V+ + + +K + I
Sbjct: 3 KGKVALV--TGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGSDAIAVR 60
Query: 205 --VVSPDPIFRSFDATP------------------------SDQIWNEII-INAGATALM 237
V + + + T ++ W+ +I N L
Sbjct: 61 ADVANAEDVTNMVKQTVDVFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLC 120
Query: 238 TKLVLPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQ 297
TK V M +R G IVN+ S+ +P NY A KA + +K+ EL NI V
Sbjct: 121 TKAVSRFMMRQRHGRIVNIASVVGVTGNPGQANYVAAKAGVIGLTKTSAKELASRNITVN 180
Query: 298 YLYPGLVDTNMTK---DNSLTA--KNIPL 321
+ PG + T+MT +N K IP
Sbjct: 181 AIAPGFIATDMTDVLDENIKAEMLKLIPA 209
Score = 73.3 bits (181), Expect = 3e-15
Identities = 55/184 (29%), Positives = 90/184 (48%), Gaps = 23/184 (12%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVL-ISRTLQKLNDTANEIRKQYDVEVKIIQADFSEG 60
+VTG++ GIG+A AI+LAK+ ++V+ + QK N+ +EI K+ + ++AD +
Sbjct: 8 LVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEI-KKLGSDAIAVRADVANA 66
Query: 61 LQVYAHIEKELQDM-DVGILVNNVGIAPPHPTFR----KFDDISKEHLYNEITVNTGAPS 115
V +++ + V ILVNN G+ + R ++D + I N
Sbjct: 67 EDVTNMVKQTVDVFGQVDILVNNAGVTKDNLLMRMKEEEWDTV--------INTNLKGVF 118
Query: 116 QMTRMLLPHM-KQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQ 174
T+ + M +QR G IV + S+V V +P NY KA V+ G+ K A +
Sbjct: 119 LCTKAVSRFMMRQRH-GRIVNIASVVGVTGNPGQANYVAAKAGVI------GLTKTSAKE 171
Query: 175 LAKR 178
LA R
Sbjct: 172 LASR 175
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain
dehydrogenase, methotrexate resistance, oxidoreductase;
HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2
PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A*
2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Length = 291
Score = 77.0 bits (190), Expect = 3e-16
Identities = 31/213 (14%), Positives = 65/213 (30%), Gaps = 41/213 (19%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLI-SRTLQKLNDTANEIRKQYDVEVKIIQADFSEG 60
+VTG+ +G++ A L + L R+ + N + + + +QAD S
Sbjct: 13 LVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNV 72
Query: 61 LQVYAHIEKELQDMDVG------------------ILVNNVGIAPPHPTFR----KFDDI 98
+ + +LVNN P P R +
Sbjct: 73 ATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPC 132
Query: 99 SKEHLYNE------ITVNTGAPSQMTRMLLPHM------KQRKRGMIVFVGSIVQVFKSP 146
+ E N AP + + + + I+ + +
Sbjct: 133 VGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMTNQPLL 192
Query: 147 YFVNYSGTKAFVVLTGSTDGIGKAYAIQLAKRK 179
+ Y+ K + +G+ ++ A++LA +
Sbjct: 193 GYTIYTMAKGAL------EGLTRSAALELAPLQ 219
Score = 72.4 bits (178), Expect = 1e-14
Identities = 29/143 (20%), Positives = 48/143 (33%), Gaps = 20/143 (13%)
Query: 199 IL-NNVGVVSPDPIFR----SFDATP-----SDQIWNEII-INAGATALMTKLVLPRMKL 247
+L NN P P+ R + + ++ NA A + K R+
Sbjct: 108 VLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAG 167
Query: 248 ------KRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYP 301
I+NM + +P T Y K +E ++S EL I+V + P
Sbjct: 168 TPAKHRGTNYSIINMVDAMTNQPLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGP 227
Query: 302 GLVDTNMTKDNSLTAK---NIPL 321
GL ++ +PL
Sbjct: 228 GLSVLVDDMPPAVWEGHRSKVPL 250
Score = 30.4 bits (69), Expect = 0.76
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 158 VVL-TGSTDGIGKAYAIQLAKRKMNLVLI-SRSMEKLKNTAEYILNNVG 204
V L TG+ +G++ A L + L RS + + +
Sbjct: 11 VALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRP 59
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold,
oxoacyl-ACP reductase, NADP binding, fatty AC
biosynthsis, oxidoreductase; HET: NAP; 2.38A
{Synechococcus elongatus} PDB: 4dml_A*
Length = 269
Score = 76.4 bits (189), Expect = 3e-16
Identities = 47/208 (22%), Positives = 77/208 (37%), Gaps = 42/208 (20%)
Query: 152 SGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVL-ISRSMEKLKNTAEYILNNVG------ 204
+ A V TG++ GIG+A A++LA + + + S I G
Sbjct: 27 TDRIALV--TGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVK 84
Query: 205 --VVSPDPIFRSFDATP------------------------SDQIWNEII-INAGATALM 237
V + F A W ++ +N G L
Sbjct: 85 ADVSQESEVEALFAAVIERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLC 144
Query: 238 TKLVLPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQ 297
++ M +R G I+N+ S+ +P NY+A KA + +K++ EL I V
Sbjct: 145 SRAAAKIMLKQRSGRIINIASVVGEMGNPGQANYSAAKAGVIGLTKTVAKELASRGITVN 204
Query: 298 YLYPGLVDTNMTKDNSLT----AKNIPL 321
+ PG + T+MT + L + IPL
Sbjct: 205 AVAPGFIATDMTSE--LAAEKLLEVIPL 230
Score = 71.8 bits (177), Expect = 2e-14
Identities = 49/184 (26%), Positives = 80/184 (43%), Gaps = 23/184 (12%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVL-ISRTLQKLNDTANEIRKQYDVEVKIIQADFSEG 60
+VTG++ GIG+A A+ELA + + + + ++ I E ++AD S+
Sbjct: 32 LVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAI-AAAGGEAFAVKADVSQE 90
Query: 61 LQVYAHIEKELQDM-DVGILVNNVGIAPPHPTFR----KFDDISKEHLYNEITVNTGAPS 115
+V A ++ + +LVNN GI R + + + +N G
Sbjct: 91 SEVEALFAAVIERWGRLDVLVNNAGITRDTLLLRMKRDDWQSV--------LDLNLGGVF 142
Query: 116 QMTRMLLPHM-KQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQ 174
+R M KQR G I+ + S+V +P NYS KA V+ G+ K A +
Sbjct: 143 LCSRAAAKIMLKQRS-GRIINIASVVGEMGNPGQANYSAAKAGVI------GLTKTVAKE 195
Query: 175 LAKR 178
LA R
Sbjct: 196 LASR 199
>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein;
structural genomics, ssgcid; 1.70A {Mycobacterium
smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A
Length = 454
Score = 78.1 bits (193), Expect = 4e-16
Identities = 43/210 (20%), Positives = 79/210 (37%), Gaps = 44/210 (20%)
Query: 152 SGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVL--ISRSMEKLKNTAE------YILNNV 203
G A V TG+ GIG A A+ +V + + E LK A+ L+
Sbjct: 212 DGKVAVV--TGAARGIGATIAEVFARDGATVVAIDVDGAAEDLKRVADKVGGTALTLD-- 267
Query: 204 GVVSPDPIFRSFDATP-------------------------SDQIWNEII-INAGATALM 237
V + D + + ++ W+ +I +N A +
Sbjct: 268 -VTADDAVDKITAHVTEHHGGKVDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRL 326
Query: 238 TKLVLPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQ 297
T+ ++ + G ++ + S++ + TNYA TKA M +++L L + I +
Sbjct: 327 TEGLVGNGTIGEGGRVIGLSSMAGIAGNRGQTNYATTKAGMIGLAEALAPVLADKGITIN 386
Query: 298 YLYPGLVDTNMTKDNSLTAK-----NIPLS 322
+ PG ++T MT+ L + L
Sbjct: 387 AVAPGFIETKMTEAIPLATREVGRRLNSLF 416
Score = 67.3 bits (165), Expect = 1e-12
Identities = 46/198 (23%), Positives = 76/198 (38%), Gaps = 54/198 (27%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVL--ISRTLQKLNDTANEIR---KQYDVEVKIIQAD 56
VVTG+ GIG A A+ +V + + L A+++ DV
Sbjct: 217 VVTGAARGIGATIAEVFARDGATVVAIDVDGAAEDLKRVADKVGGTALTLDV------TA 270
Query: 57 FSEGLQVYAHIEKELQDMDVGILVNNVGIAPPHPT-----FR----KFDDISKEHLYNEI 107
++ AH+ + V ILVNN GI T ++D + I
Sbjct: 271 DDAVDKITAHVTEHHGG-KVDILVNNAGI-----TRDKLLANMDEKRWDAV--------I 316
Query: 108 TVNTGAPSQMTRMLLPHMKQRKRGMIVFVGSIV-------QVFKSPYFVNYSGTKAFVVL 160
VN AP ++T L+ + + G ++ + S+ Q NY+ TKA ++
Sbjct: 317 AVNLLAPQRLTEGLVGNGTIGEGGRVIGLSSMAGIAGNRGQ-------TNYATTKAGMI- 368
Query: 161 TGSTDGIGKAYAIQLAKR 178
G+ +A A LA +
Sbjct: 369 -----GLAEALAPVLADK 381
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann
fold, short-chain dehydrogenase, oxidoreductase; 1.22A
{Comamonas testosteroni} SCOP: c.2.1.2
Length = 253
Score = 75.6 bits (187), Expect = 6e-16
Identities = 32/191 (16%), Positives = 67/191 (35%), Gaps = 43/191 (22%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYI------------------ 199
++TG G+G L + + + A +
Sbjct: 9 ALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWT 68
Query: 200 ----------------LNNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTKLVL 242
+NN G++ P + + + ++ ++ IN + + + +
Sbjct: 69 LVMAAVQRRLGTLNVLVNNAGILLPGDM----ETGRLED-FSRLLKINTESVFIGCQQGI 123
Query: 243 PRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAEL--YEYNIQVQYLY 300
MK + G I+NM S+SS P Y+A+KA + +++ Y I+V ++
Sbjct: 124 AAMK-ETGGSIINMASVSSWLPIEQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIH 182
Query: 301 PGLVDTNMTKD 311
P + T M +
Sbjct: 183 PDGIYTPMMQA 193
Score = 60.6 bits (148), Expect = 7e-11
Identities = 35/182 (19%), Positives = 62/182 (34%), Gaps = 18/182 (9%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+VTG G+G L + A E+ + ++ D S
Sbjct: 10 LVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGE----RSMFVRHDVSSEA 65
Query: 62 QVYAHIEKELQDM-DVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMTRM 120
+ + + + +LVNN GI P + E + +NT + +
Sbjct: 66 DWTLVMAAVQRRLGTLNVLVNNAGILLPGD----METGRLEDFSRLLKINTESVFIGCQQ 121
Query: 121 LLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVV-LTGSTDGIGKAYAIQLAKRK 179
+ MK+ G I+ + S+ + YS +KA V LT +A A+ K+
Sbjct: 122 GIAAMKETG-GSIINMASVSSWLPIEQYAGYSASKAAVSALT-------RAAALSCRKQG 173
Query: 180 MN 181
Sbjct: 174 YA 175
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 76.3 bits (188), Expect = 6e-16
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 13/143 (9%)
Query: 2 VVTGSTDGIGKAYAIELAKRK-MDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEG 60
+VTG GIG A +L + D+VL +R + + +++ + + + Q D +
Sbjct: 8 LVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG-LSPRFHQLDIDDL 66
Query: 61 LQV---YAHIEKELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQM 117
+ + KE +D +LVNN GIA F ++ + N +
Sbjct: 67 QSIRALRDFLRKEYGGLD--VLVNNAGIAFKVADPTPFHIQAEVTM----KTNFFGTRDV 120
Query: 118 TRMLLPHMKQRKRGMIVFVGSIV 140
LLP +K + R +V V SI+
Sbjct: 121 CTELLPLIKPQGR--VVNVSSIM 141
Score = 61.2 bits (149), Expect = 6e-11
Identities = 45/261 (17%), Positives = 75/261 (28%), Gaps = 94/261 (36%)
Query: 152 SGTKAFVVLTGSTDGIGKAYAIQLAKRK-MNLVLISRSMEKLKNTAEYIL---------- 200
SG +V TG GIG A L + ++VL +R + + + + +
Sbjct: 2 SGIHVALV-TGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQ 60
Query: 201 ---------------------------NNVGVVSPDPIFRSFDATPSDQIWNEII-INAG 232
NN G+ F+ D TP + N
Sbjct: 61 LDIDDLQSIRALRDFLRKEYGGLDVLVNNAGIA-----FKVADPTPFHIQAEVTMKTNFF 115
Query: 233 ATALMTKLVLPRMKLKRRGIIVN----MGSLSSRKPHPFLTN------------------ 270
T + +LP +K +G +VN M + + P L
Sbjct: 116 GTRDVCTELLPL--IKPQGRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNK 173
Query: 271 -------------------YAATKAYMELFSKSLQAELYEY----NIQVQYLYPGLVDTN 307
Y TK + + S+ +L E I + PG V T+
Sbjct: 174 FVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTD 233
Query: 308 MTKDNSLTAKNIPLSIQPILY 328
M + K+ + +Y
Sbjct: 234 MAGPKA--TKSPEEGAETPVY 252
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.85A {Mycobacterium avium}
Length = 280
Score = 74.9 bits (185), Expect = 1e-15
Identities = 38/199 (19%), Positives = 75/199 (37%), Gaps = 40/199 (20%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLI-------------SRTLQKLNDTANEIRKQYDV 48
+TG+ G G+++A+ LA D++ + + L++TA + Q
Sbjct: 19 FITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQ-GR 77
Query: 49 EVKIIQADFSEGLQVYAHIEK---ELQDMDVGILVNNVGIAPPHPTFR----KFDDISKE 101
+ D + + + + +D ++V N G+ + ++D +
Sbjct: 78 KALTRVLDVRDDAALRELVADGMEQFGRLD--VVVANAGVLSWGRVWELTDEQWDTV--- 132
Query: 102 HLYNEITVN-TGAPSQMTRMLLPHMKQRKR-GMIVFVGSIVQVFKSPYFVNYSGTKAFVV 159
I VN TG + R +P M + G IV V S + +P +YS +K +
Sbjct: 133 -----IGVNLTGT-WRTLRATVPAMIEAGNGGSIVVVSSSAGLKATPGNGHYSASKHGLT 186
Query: 160 LTGSTDGIGKAYAIQLAKR 178
+ AI+L +
Sbjct: 187 ------ALTNTLAIELGEY 199
Score = 74.1 bits (183), Expect = 3e-15
Identities = 45/213 (21%), Positives = 83/213 (38%), Gaps = 59/213 (27%)
Query: 156 AFVVLTGSTDGIGKAYAIQLAKRKMNLVLI-------------SRSMEKLKNTAEYI--- 199
AF+ TG+ G G+++A++LA +++ S E L TA +
Sbjct: 18 AFI--TGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQ 75
Query: 200 ----------------------------------LNNVGVVSPDPIFRSFDATPSDQIWN 225
+ N GV+S ++ +D+ W+
Sbjct: 76 GRKALTRVLDVRDDAALRELVADGMEQFGRLDVVVANAGVLSWGRVWE-----LTDEQWD 130
Query: 226 EII-INAGATALMTKLVLPRM-KLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSK 283
+I +N T + +P M + G IV + S + K P +Y+A+K + +
Sbjct: 131 TVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAGLKATPGNGHYSASKHGLTALTN 190
Query: 284 SLQAELYEYNIQVQYLYPGLVDTNMTKDNSLTA 316
+L EL EY I+V ++P V+T M + ++
Sbjct: 191 TLAIELGEYGIRVNSIHPYSVETPMIEPEAMME 223
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase,
oxidoreductase, structural genomics; HET: P4C; 2.25A
{Burkholderia pseudomallei 1710B}
Length = 256
Score = 74.1 bits (183), Expect = 2e-15
Identities = 46/209 (22%), Positives = 76/209 (36%), Gaps = 41/209 (19%)
Query: 152 SGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLI-SRSMEKLKNTAEYILNNVG------ 204
S A+V TG GIG + +L K +V + + E
Sbjct: 12 SQRIAYV--TGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALGFDFYASE 69
Query: 205 --VVSPDPIFRSFDATP------------------------SDQIWNEII-INAGATALM 237
V D ++FD + + W +I N + +
Sbjct: 70 GNVGDWDSTKQAFDKVKAEVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNV 129
Query: 238 TKLVLPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQ 297
TK V+ M + G I+N+ S++ +K TNY+ KA + F+ SL E+ + V
Sbjct: 130 TKQVIDGMVERGWGRIINISSVNGQKGQFGQTNYSTAKAGIHGFTMSLAQEVATKGVTVN 189
Query: 298 YLYPGLVDTNMTK---DNSLTA--KNIPL 321
+ PG + T+M K + L IP+
Sbjct: 190 TVSPGYIGTDMVKAIRPDVLEKIVATIPV 218
Score = 68.3 bits (168), Expect = 2e-13
Identities = 38/187 (20%), Positives = 67/187 (35%), Gaps = 29/187 (15%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
VTG GIG + L K +V E +K + + + +
Sbjct: 17 YVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDWD 76
Query: 62 QVYAHIEKELQDM-DVGILVNNVGIAPPHPT----FRK-----FDDISKEHLYNEITVNT 111
+K ++ ++ +LVNN GI T FRK + + I N
Sbjct: 77 STKQAFDKVKAEVGEIDVLVNNAGI-----TRDVVFRKMTREDWQAV--------IDTNL 123
Query: 112 GAPSQMTRMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAY 171
+ +T+ ++ M +R G I+ + S+ NYS KA + G +
Sbjct: 124 TSLFNVTKQVIDGMVERGWGRIINISSVNGQKGQFGQTNYSTAKAGIH------GFTMSL 177
Query: 172 AIQLAKR 178
A ++A +
Sbjct: 178 AQEVATK 184
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 73.4 bits (181), Expect = 4e-15
Identities = 43/210 (20%), Positives = 75/210 (35%), Gaps = 42/210 (20%)
Query: 152 SGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYILNNVG------- 204
+ AFV TG G+G A + +L M + + +T + G
Sbjct: 24 AKRVAFV--TGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDAGRDFKAYA 81
Query: 205 --VVSPDPIFRSFDATP------------------------SDQIWNEII-INAGATALM 237
V + R + + W+ ++ + A +
Sbjct: 82 VDVADFESCERCAEKVLADFGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNV 141
Query: 238 TKLVLPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQ 297
TK + M +R G IVN+GS++ + NYA+ KA + F+K+L E + I V
Sbjct: 142 TKQFIAGMVERRFGRIVNIGSVNGSRGAFGQANYASAKAGIHGFTKTLALETAKRGITVN 201
Query: 298 YLYPGLVDTNMTKD------NSLTAKNIPL 321
+ PG + T M + + IP+
Sbjct: 202 TVSPGYLATAMVEAVPQDVLEAKILPQIPV 231
Score = 69.1 bits (170), Expect = 1e-13
Identities = 44/187 (23%), Positives = 70/187 (37%), Gaps = 29/187 (15%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
VTG G+G A + L M + + T + + K D ++
Sbjct: 29 FVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVADFE 88
Query: 62 QVYAHIEKELQDM-DVGILVNNVGIAPPHPT----FRK-----FDDISKEHLYNEITVNT 111
EK L D V +L+NN GI T F K +D + + +
Sbjct: 89 SCERCAEKVLADFGKVDVLINNAGI-----TRDATFMKMTKGDWDAV--------MRTDL 135
Query: 112 GAPSQMTRMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAY 171
A +T+ + M +R+ G IV +GS+ + NY+ KA + G K
Sbjct: 136 DAMFNVTKQFIAGMVERRFGRIVNIGSVNGSRGAFGQANYASAKAGIH------GFTKTL 189
Query: 172 AIQLAKR 178
A++ AKR
Sbjct: 190 ALETAKR 196
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics,
3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus
thuringiensis serovar kurstakorganism_taxid}
Length = 264
Score = 73.4 bits (181), Expect = 4e-15
Identities = 39/207 (18%), Positives = 73/207 (35%), Gaps = 43/207 (20%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYILNNVG---------VVSP 208
++T T G+GK +L + ++ + S T + +V V
Sbjct: 10 ALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTKK 69
Query: 209 DPIFRSFDATP--------------------------SDQIWNEII-INAGATALMTKLV 241
+ + + + + WNE+I N A + KLV
Sbjct: 70 EDLHKIVEEAMSHFGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLV 129
Query: 242 LPRMKLKRRGIIVNMGSLSSRKPH--PFLTNYAATKAYMELFSKSLQAELYEYNIQVQYL 299
+P M+ + G I+N G + + + +AA K + +K++ E EY I +
Sbjct: 130 VPVMRKQNFGRIINYGFQGADSAPGWIYRSAFAAAKVGLVSLTKTVAYEEAEYGITANMV 189
Query: 300 YPGLVDTNMTKDNSLTAK-----NIPL 321
PG + M + A+ N P+
Sbjct: 190 CPGDIIGEMKEATIQEARQLKEHNTPI 216
Score = 68.7 bits (169), Expect = 1e-13
Identities = 34/182 (18%), Positives = 73/182 (40%), Gaps = 15/182 (8%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
++T T G+GK +L + + + + +T E K + ++ +QAD ++
Sbjct: 11 LITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTKKE 70
Query: 62 QVYAHIEKELQDM-DVGILVNNVGIAPPHPTFR--KFDDISKEHLYNEITVNTGAPSQMT 118
++ +E+ + + L+NN G F K D ++ I N A +
Sbjct: 71 DLHKIVEEAMSHFGKIDFLINNAGP----YVFERKKLVDYEEDEWNEMIQGNLTAVFHLL 126
Query: 119 RMLLPHMKQRKRGMIVFVG--SIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQLA 176
++++P M+++ G I+ G Y ++ K +V + K A + A
Sbjct: 127 KLVVPVMRKQNFGRIINYGFQGADSAPGWIYRSAFAAAKVGLV------SLTKTVAYEEA 180
Query: 177 KR 178
+
Sbjct: 181 EY 182
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid,
structural genomics, seattle structural genomics CEN
infectious disease; HET: NAD PG4; 1.55A {Mycobacterium
avium} PDB: 3uwr_A*
Length = 286
Score = 72.6 bits (179), Expect = 1e-14
Identities = 45/246 (18%), Positives = 84/246 (34%), Gaps = 61/246 (24%)
Query: 156 AFVVLTGSTDGIGKAYAIQLAKRKMNLVLI----------------SRSMEKLKNTAEYI 199
AFV TG+ G G+++A++LA+ +++ + + + E L TA+ +
Sbjct: 14 AFV--TGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLV 71
Query: 200 -------------------------------------LNNVGVVSPDPIFRSFDATPSDQ 222
+ N G+ + S++
Sbjct: 72 KGHNRRIVTAEVDVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTL----DKTSEE 127
Query: 223 IWNEII-INAGATALMTKLVLPRM-KLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMEL 280
W E+I IN K +P M R G I+ S+ K +P +Y A K +
Sbjct: 128 DWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSVGGLKAYPHTGHYVAAKHGVVG 187
Query: 281 FSKSLQAELYEYNIQVQYLYPGLVDTNMTKDNSLTAKNIPLSIQPILYPNARLYASWAVS 340
++ EL ++ I+V ++P V T M + P P A + +
Sbjct: 188 LMRAFGVELGQHMIRVNSVHPTHVKTPMLHNEGTFKMFRPDLENPGPDDMAPICQMFHTL 247
Query: 341 TLGLLR 346
+ +
Sbjct: 248 PIPWVE 253
Score = 68.4 bits (168), Expect = 3e-13
Identities = 43/198 (21%), Positives = 86/198 (43%), Gaps = 34/198 (17%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLI----------------SRTLQKLNDTANEIRKQ 45
VTG+ G G+++A+ LA+ D++ + + T + L +TA+ ++
Sbjct: 15 FVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGH 74
Query: 46 YDVEVKIIQADFSEGLQVYAHIE---KELQDMDVGILVNNVGIAPPHPTFRKFDDISKEH 102
+ + + D + + A ++ ++L +D I+V N GI T D S+E
Sbjct: 75 -NRRIVTAEVDVRDYDALKAAVDSGVEQLGRLD--IIVANAGIGNGGDTL---DKTSEED 128
Query: 103 LYNEITVN-TGAPSQMTRMLLPHM-KQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVL 160
I +N G + + +PHM + G I+ S+ + P+ +Y K VV
Sbjct: 129 WTEMIDINLAGV-WKTVKAGVPHMIAGGRGGSIILTSSVGGLKAYPHTGHYVAAKHGVV- 186
Query: 161 TGSTDGIGKAYAIQLAKR 178
G+ +A+ ++L +
Sbjct: 187 -----GLMRAFGVELGQH 199
>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones,
alternative binding mode, oxidoreductase; HET: TES;
1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A*
1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A*
3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A*
3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...
Length = 327
Score = 72.8 bits (179), Expect = 1e-14
Identities = 38/217 (17%), Positives = 66/217 (30%), Gaps = 46/217 (21%)
Query: 158 VVL-TGSTDGIGKAYAIQLAKRKM---NLVLISRSMEKLKNTAEYILNNVG--------- 204
VVL TG + GIG A++LA + R ++ E
Sbjct: 4 VVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQ 63
Query: 205 --VVSPDPIFRSFDATPSDQI---WNEIIINAGA------------------------TA 235
V + + + ++ NAG T
Sbjct: 64 LDVRDSKSVAAARERVTEGRVDVLVC----NAGLGLLGPLEALGEDAVASVLDVNVVGTV 119
Query: 236 LMTKLVLPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQ 295
M + LP MK + G ++ GS+ PF Y A+K +E +SL L + +
Sbjct: 120 RMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFALEGLCESLAVLLLPFGVH 179
Query: 296 VQYLYPGLVDTNMTKDNSLTAKNIPLSIQPILYPNAR 332
+ + G V T + + + + +
Sbjct: 180 LSLIECGPVHTAFMEKVLGSPEEVLDRTDIHTFHRFY 216
Score = 64.7 bits (158), Expect = 6e-12
Identities = 38/160 (23%), Positives = 67/160 (41%), Gaps = 12/160 (7%)
Query: 2 VVTGSTDGIGKAYAIELAKRKM--DLVLI-SRTLQKLNDTANEIRKQYDVE--VKIIQAD 56
++TG + GIG A+ LA V R L+ R ++ +Q D
Sbjct: 6 LITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLD 65
Query: 57 FSEGLQVYAHIEKELQD-MDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPS 115
+ V A E+ + +DV LV N G+ P + + ++ + + + VN
Sbjct: 66 VRDSKSVAAARERVTEGRVDV--LVCNAGLGLLGP----LEALGEDAVASVLDVNVVGTV 119
Query: 116 QMTRMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTK 155
+M + LP MK+R G ++ GS+ + P+ Y +K
Sbjct: 120 RMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASK 159
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann
fold; HET: NAI; 1.80A {Pseudomonas SP}
Length = 255
Score = 71.5 bits (176), Expect = 2e-14
Identities = 27/191 (14%), Positives = 58/191 (30%), Gaps = 38/191 (19%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLK---------------------NTA 196
+ +TGS GIG A LA+ ++ I R ++
Sbjct: 4 IAITGSASGIGAALKELLARAGHTVIGIDRGQADIEADLSTPGGRETAVAAVLDRCGGVL 63
Query: 197 EYILNNVGVVSPDP------------IFRSFDATP---SDQIWNEII-INAGATALMTKL 240
+ ++ GV + D S + + + A
Sbjct: 64 DGLVCCAGVGVTAANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPGAA 123
Query: 241 VLPRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLY 300
LP ++ G L+ ++ YA +K + ++ + +++ +
Sbjct: 124 ELPMVEAMLAGDEARAIELAEQQGQTH-LAYAGSKYAVTCLARRNVVDWAGRGVRLNVVA 182
Query: 301 PGLVDTNMTKD 311
PG V+T + +
Sbjct: 183 PGAVETPLLQA 193
Score = 66.9 bits (164), Expect = 6e-13
Identities = 34/184 (18%), Positives = 64/184 (34%), Gaps = 21/184 (11%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFS--- 58
+TGS GIG A LA+ ++ I R D ++ E + A
Sbjct: 5 AITGSASGIGAALKELLARAGHTVIGIDRGQA---DIEADLSTPGGRET-AVAAVLDRCG 60
Query: 59 ---EGLQVYAHIEKELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPS 115
+GL A + + + + VN G++ + +S+ + V + A +
Sbjct: 61 GVLDGLVCCAGVGVTAANSGLVVAVNYFGVSALLDGLA--EALSRGQQPAAVIVGSIAAT 118
Query: 116 QMTRMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVV-LTGSTDGIGKAYAIQ 174
Q LP ++ G + + + + Y+G+K V L + +
Sbjct: 119 QPGAAELPMVEAMLAGDEARAIELAEQQGQTH-LAYAGSKYAVTCLA-------RRNVVD 170
Query: 175 LAKR 178
A R
Sbjct: 171 WAGR 174
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A
{Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A*
2bgm_A*
Length = 278
Score = 71.8 bits (177), Expect = 2e-14
Identities = 41/192 (21%), Positives = 70/192 (36%), Gaps = 41/192 (21%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYI------------------ 199
++TG GIG+ A + +V+ + + + I
Sbjct: 19 AIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDED 78
Query: 200 ------------------LNNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTKL 240
NVGV+S P S ++ + ++ IN L+ K
Sbjct: 79 VRNLVDTTIAKHGKLDIMFGNVGVLSTTP--YSILEAGNED-FKRVMDINVYGAFLVAKH 135
Query: 241 VLPRMKLKRRGIIVNMGSLSSRKPHPFLTN-YAATKAYMELFSKSLQAELYEYNIQVQYL 299
M ++G IV S+SS +++ Y ATK + + SL EL EY I+V +
Sbjct: 136 AARVMIPAKKGSIVFTASISSFTAGEGVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCV 195
Query: 300 YPGLVDTNMTKD 311
P +V + + D
Sbjct: 196 SPYIVASPLLTD 207
Score = 60.6 bits (148), Expect = 1e-10
Identities = 33/183 (18%), Positives = 61/183 (33%), Gaps = 20/183 (10%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
++TG GIG+ A + +V+ N I + + D ++
Sbjct: 20 IITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS--PDVISFVHCDVTKDE 77
Query: 62 QVYAHIEKELQ-----DMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQ 116
V ++ + D I+ NVG+ P + E + +N
Sbjct: 78 DVRNLVDTTIAKHGKLD----IMFGNVGVLSTTP--YSILEAGNEDFKRVMDINVYGAFL 131
Query: 117 MTRMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVN-YSGTKAFVVLTGSTDGIGKAYAIQL 175
+ + M K+G IVF SI + Y+ TK V+ G+ + +L
Sbjct: 132 VAKHAARVMIPAKKGSIVFTASISSFTAGEGVSHVYTATKHAVL------GLTTSLCTEL 185
Query: 176 AKR 178
+
Sbjct: 186 GEY 188
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent
oxidoreductase (SDR family), structural genomics, PSI;
2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Length = 250
Score = 69.3 bits (170), Expect = 9e-14
Identities = 38/208 (18%), Positives = 80/208 (38%), Gaps = 36/208 (17%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLI--SRTLQKLNDTANEIRKQYDVEVKIIQADFSE 59
VVTG+ GIG +L K K +I +R + A E++ D V ++ +
Sbjct: 7 VVTGANRGIGLGLVQQLVKDKNIRHIIATARD----VEKATELKSIKDSRVHVLPLTVTC 62
Query: 60 GLQV---YAHIEKELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQ 116
+ + + + + + +L+NN G+ + T + ++ + ++ VNT +
Sbjct: 63 DKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTN---TEPNRAVIAEQLDVNTTSVVL 119
Query: 117 MTRMLLPHMKQ-----------RKRGMIVFVGSIV-------QVFKSPYFVNYSGTKAFV 158
+T+ LLP +K R ++ + S + + Y +KA +
Sbjct: 120 LTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNTSGSAQFPVLAYRMSKAAI 179
Query: 159 VLTGSTDGIGKAYAIQLAKRKMNLVLIS 186
+ G+ A+ L + +V
Sbjct: 180 ------NMFGRTLAVDLKDDNVLVVNFC 201
Score = 66.2 bits (162), Expect = 9e-13
Identities = 45/215 (20%), Positives = 78/215 (36%), Gaps = 59/215 (27%)
Query: 154 TKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLI--SRSMEK-------------------- 191
+ VV+TG+ GIG QL K K +I +R +EK
Sbjct: 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVT 61
Query: 192 ----LKNTAEYI------------LNNVGVVSPDPIFRSFDATPSDQIWNEIIINAGATA 235
L + +NN GV+ + I ++ +N +
Sbjct: 62 CDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYG---TNTEPNRAVIAEQLDVNTTSVV 118
Query: 236 LMTKLVLPRMK-----------LKRRGIIVN----MGSLS---SRKPHPFLTNYAATKAY 277
L+T+ +LP +K R ++ +GS++ S + Y +KA
Sbjct: 119 LLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNTSGSAQFPVLAYRMSKAA 178
Query: 278 MELFSKSLQAELYEYNIQVQYLYPGLVDTNMTKDN 312
+ +F ++L +L + N+ V PG V TN+ N
Sbjct: 179 INMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGGKN 213
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas
mycobacterium avium, structural genomics; 2.00A
{Mycobacterium avium}
Length = 281
Score = 68.9 bits (169), Expect = 2e-13
Identities = 36/197 (18%), Positives = 69/197 (35%), Gaps = 42/197 (21%)
Query: 155 KAFVVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAE----------------- 197
+ +V +G G+G+A +L + +V+ + EK K A+
Sbjct: 31 ASAIV-SGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADELGNRAEFVSTNVTSED 89
Query: 198 ----------------YILNNVGVVSPDPIFRSFDATPSD-QIWNEII-INAGATALMTK 239
Y + G D +P+D + + I + T + +
Sbjct: 90 SVLAAIEAANQLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVAR 149
Query: 240 LVLPRMKLKR------RGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYN 293
LV + RG +V S++ + T YAA KA + + + +L
Sbjct: 150 LVAASIAAAEPRENGERGALVLTASIAGYEGQIGQTAYAAAKAGVIGLTIAAARDLSSAG 209
Query: 294 IQVQYLYPGLVDTNMTK 310
I+V + PG + T + +
Sbjct: 210 IRVNTIAPGTMKTPIME 226
Score = 60.4 bits (147), Expect = 1e-10
Identities = 32/185 (17%), Positives = 64/185 (34%), Gaps = 18/185 (9%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+V+G G+G+A L + +V+ +K A+E+ + + + +
Sbjct: 34 IVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADEL----GNRAEFVSTNVTSED 89
Query: 62 QVYAHIEKELQDM-DVGILVNNVGIAPPHPTFRKFDDISKEHLYNE-ITVNTGAPSQMTR 119
V A IE Q +V + G ++ + + + I + + R
Sbjct: 90 SVLAAIEAANQLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVAR 149
Query: 120 MLLPHMKQRK------RGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAI 173
++ + + RG +V SI Y+ KA V+ G+ A A
Sbjct: 150 LVAASIAAAEPRENGERGALVLTASIAGYEGQIGQTAYAAAKAGVI------GLTIAAAR 203
Query: 174 QLAKR 178
L+
Sbjct: 204 DLSSA 208
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.34A {Sinorhizobium meliloti}
Length = 257
Score = 68.0 bits (167), Expect = 2e-13
Identities = 37/165 (22%), Positives = 60/165 (36%), Gaps = 11/165 (6%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+VTG++ G+G A LA+ ++ + + A E+ V+ AD +
Sbjct: 11 IVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAEL----GAAVRFRNADVTNEA 66
Query: 62 QVYAHIEKELQDM-DVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMTRM 120
A + Q+ V LVN G AP + + + + VN M R+
Sbjct: 67 DATAALAFAKQEFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRL 126
Query: 121 LLPHMKQRK------RGMIVFVGSIVQVFKSPYFVNYSGTKAFVV 159
M Q + RG+IV SI Y+ +K V
Sbjct: 127 AAEVMSQGEPDADGERGVIVNTASIAAFDGQIGQAAYAASKGGVA 171
Score = 66.5 bits (163), Expect = 1e-12
Identities = 38/197 (19%), Positives = 66/197 (33%), Gaps = 43/197 (21%)
Query: 155 KAFVVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYI--------------- 199
+ F+V TG++ G+G A LA+ ++ + + A +
Sbjct: 8 RVFIV-TGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAELGAAVRFRNADVTNEA 66
Query: 200 -------------------LNNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTK 239
+N G + I D + + +N T M +
Sbjct: 67 DATAALAFAKQEFGHVHGLVNCAGTAPGEKILGRSGPHALDS-FARTVAVNLIGTFNMIR 125
Query: 240 LVLPRM------KLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYN 293
L M RG+IVN S+++ YAA+K + + EL +
Sbjct: 126 LAAEVMSQGEPDADGERGVIVNTASIAAFDGQIGQAAYAASKGGVAALTLPAARELARFG 185
Query: 294 IQVQYLYPGLVDTNMTK 310
I+V + PG+ DT M
Sbjct: 186 IRVVTIAPGIFDTPMMA 202
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 66.6 bits (163), Expect = 8e-13
Identities = 37/206 (17%), Positives = 75/206 (36%), Gaps = 33/206 (16%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLI---SRTLQKLNDTANEIRKQYDVEVKIIQADFS 58
++TG G+G L + R ++ + ++ K + + I++ D
Sbjct: 25 LITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKE-LEDLAKNHS-NIHILEIDLR 82
Query: 59 EGLQV---YAHIEKELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPS 115
A IE +D + +L NN GIAP + + L + + NT P
Sbjct: 83 NFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARI---TAVRSQELLDTLQTNTVVPI 139
Query: 116 QMTRMLLPHMKQ-----------RKRGMIVFV----GSIVQVFKSPYFVNYSGTKAFVVL 160
+ + LP +K+ R I+ + GSI + Y +K+ +
Sbjct: 140 MLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQGNTDGGMYA-YRTSKSAL-- 196
Query: 161 TGSTDGIGKAYAIQLAKRKMNLVLIS 186
+ K+ ++ L +++ V +
Sbjct: 197 ----NAATKSLSVDLYPQRIMCVSLH 218
Score = 61.2 bits (149), Expect = 6e-11
Identities = 37/211 (17%), Positives = 68/211 (32%), Gaps = 60/211 (28%)
Query: 158 VVLTGSTDGIGKAYAIQ--------------------------LAKRKMNLVL------- 184
+++TG G+G LAK N+ +
Sbjct: 24 ILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRN 83
Query: 185 ---ISRSMEKLKNTAEY-----ILNNVGVVSPDPIFRSFDATPSDQIWNEIIINAGATAL 236
+ + ++ + + NN G+ A S ++ + + N +
Sbjct: 84 FDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSA---RITAVRSQELLDTLQTNTVVPIM 140
Query: 237 MTKLVLPRMK-----------LKRRGIIVN----MGSLSSRKPHPFLTNYAATKAYMELF 281
+ K LP +K R I+N +GS+ Y +K+ +
Sbjct: 141 LAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQGNTDGGMYA-YRTSKSALNAA 199
Query: 282 SKSLQAELYEYNIQVQYLYPGLVDTNMTKDN 312
+KSL +LY I L+PG V T+M +
Sbjct: 200 TKSLSVDLYPQRIMCVSLHPGWVKTDMGGSS 230
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, NAD,
tuberculosis; HET: NAD; 2.00A {Mycobacterium avium}
Length = 287
Score = 66.9 bits (164), Expect = 9e-13
Identities = 21/140 (15%), Positives = 45/140 (32%), Gaps = 22/140 (15%)
Query: 199 IL-NNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTKLVLPRMKLKRRGIIVNM 256
++ N G+ Q + + ++ LP + I+
Sbjct: 102 VVVANAGICPLGA-------HLPVQAFADAFDVDFVGVINTVHAALPYLT--SGASIITT 152
Query: 257 GS-----------LSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYPGLVD 305
GS + P Y+ K ++ ++ L A+L +I+ ++P V+
Sbjct: 153 GSVAGLIAAAQPPGAGGPQGPGGAGYSYAKQLVDSYTLQLAAQLAPQSIRANVIHPTNVN 212
Query: 306 TNMTKDNSLTAKNIPLSIQP 325
T+M + + P P
Sbjct: 213 TDMLNSAPMYRQFRPDLEAP 232
Score = 66.5 bits (163), Expect = 1e-12
Identities = 40/205 (19%), Positives = 67/205 (32%), Gaps = 47/205 (22%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLI------------SRTLQKLNDTANEIRKQYDVE 49
+VTG G G+++A++LA+ D++L T + L + E+ K +
Sbjct: 14 LVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKT-GRK 72
Query: 50 VKIIQADFSEGLQVYAHIEK---ELQDMDVGILVNNVGIAPPHP--TFRKFDDISKEHLY 104
+ D + V + E +D ++V N GI P + F D
Sbjct: 73 AYTAEVDVRDRAAVSRELANAVAEFGKLD--VVVANAGICPLGAHLPVQAFADA------ 124
Query: 105 NEITVNTGAPSQMTRMLLPHMKQRKRGMIVFVGSIV-----------QVFKSPYFVNYSG 153
V+ LP++ I+ GS+ + P YS
Sbjct: 125 --FDVDFVGVINTVHAALPYLT--SGASIITTGSVAGLIAAAQPPGAGGPQGPGGAGYSY 180
Query: 154 TKAFVVLTGSTDGIGKAYAIQLAKR 178
K V A QLA +
Sbjct: 181 AKQLVD------SYTLQLAAQLAPQ 199
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty
acid, structural genomi structural genomics/proteomics
initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus}
SCOP: c.2.1.2
Length = 242
Score = 66.1 bits (162), Expect = 1e-12
Identities = 38/186 (20%), Positives = 72/186 (38%), Gaps = 33/186 (17%)
Query: 155 KAFVVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEK-------------------LKNT 195
++ +V TG G+G+A A+ L R +V++ E +
Sbjct: 3 RSALV-TGGASGLGRAAALALKARGYRVVVLDLRREGEDLIYVEGDVTREEDVRRAVARA 61
Query: 196 AEY-----ILNNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTKLVLPRM---- 245
E +++ GV + I + + ++ +N T + +L M
Sbjct: 62 QEEAPLFAVVSAAGVGLAEKILGKEGPHGLES-FRRVLEVNLLGTFNVLRLAAWAMRENP 120
Query: 246 --KLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYPGL 303
+RG+IVN S+++ + YAA+K + + EL + I+V + PGL
Sbjct: 121 PDAEGQRGVIVNTASVAAFEGQIGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGL 180
Query: 304 VDTNMT 309
DT +
Sbjct: 181 FDTPLL 186
Score = 59.9 bits (146), Expect = 1e-10
Identities = 30/164 (18%), Positives = 61/164 (37%), Gaps = 19/164 (11%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
+VTG G+G+A A+ L R +V++ D ++ ++ ++ D +
Sbjct: 6 LVTGGASGLGRAAALALKARGYRVVVL--------D-----LRREGEDLIYVEGDVTREE 52
Query: 62 QVYAHIEKELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMTRML 121
V + + ++ + +V+ G+ K E + VN + R+
Sbjct: 53 DVRRAVARAQEEAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLA 112
Query: 122 LPHMKQRK------RGMIVFVGSIVQVFKSPYFVNYSGTKAFVV 159
M++ RG+IV S+ Y+ +K VV
Sbjct: 113 AWAMRENPPDAEGQRGVIVNTASVAAFEGQIGQAAYAASKGGVV 156
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH,
2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural
genomics, structural genomi consortium; HET: NAD GOL;
1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A*
1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Length = 265
Score = 65.0 bits (159), Expect = 3e-12
Identities = 33/198 (16%), Positives = 69/198 (34%), Gaps = 43/198 (21%)
Query: 155 KAFVVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYI--------------- 199
V+ TG G+G A A +L + + VL+ + A+ +
Sbjct: 13 LVAVI-TGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTSEK 71
Query: 200 -------------------LNNVGVVSPDPIFRSFDATPSD-QIWNEII-INAGATALMT 238
+N G+ + + + ++ +N T +
Sbjct: 72 DVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVI 131
Query: 239 KLVLPRM------KLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEY 292
+LV M + +RG+I+N S+++ + Y+A+K + + + +L
Sbjct: 132 RLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIVGMTLPIARDLAPI 191
Query: 293 NIQVQYLYPGLVDTNMTK 310
I+V + PGL T +
Sbjct: 192 GIRVMTIAPGLFGTPLLT 209
Score = 63.8 bits (156), Expect = 9e-12
Identities = 35/167 (20%), Positives = 56/167 (33%), Gaps = 13/167 (7%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
V+TG G+G A A L + VL+ A ++ AD +
Sbjct: 16 VITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKL----GNNCVFAPADVTSEK 71
Query: 62 QVYAHIEKELQDM-DVGILVNNVGIAPPHPTFRKFDD--ISKEHLYNEITVNTGAPSQMT 118
V + V + VN GIA T+ + E + VN +
Sbjct: 72 DVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVI 131
Query: 119 RMLLPHMKQRK------RGMIVFVGSIVQVFKSPYFVNYSGTKAFVV 159
R++ M Q + RG+I+ S+ YS +K +V
Sbjct: 132 RLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIV 178
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain
dehydrogenase, SDR, xenobiotic, metyrapone,
oligomerisation; 1.68A {Comamonas testosteroni} SCOP:
c.2.1.2 PDB: 1fk8_A*
Length = 257
Score = 62.0 bits (151), Expect = 3e-11
Identities = 26/140 (18%), Positives = 42/140 (30%), Gaps = 31/140 (22%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
V++G GIG A L +V I D + AD S
Sbjct: 5 VISGCATGIGAATRKVLEAAGHQIVGIDI-----RDAE-------------VIADLSTAE 46
Query: 62 QVYAHIEKELQDMD--VGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMTR 119
I L + LV G+ P ++VN +++
Sbjct: 47 GRKQAIADVLAKCSKGMDGLVLCAGLGPQTKVLGNV-----------VSVNYFGATELMD 95
Query: 120 MLLPHMKQRKRGMIVFVGSI 139
LP +K+ + V + S+
Sbjct: 96 AFLPALKKGHQPAAVVISSV 115
Score = 60.4 bits (147), Expect = 1e-10
Identities = 30/193 (15%), Positives = 61/193 (31%), Gaps = 40/193 (20%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLK---NTAEYILNNVGVVSPDPIFRS 214
+V++G GIG A L +V I ++ +TAE + V +
Sbjct: 4 IVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIADLSTAEGRKQAIADVLAK-CSKG 62
Query: 215 FDA-------TPSDQIWNEII-INAGATALMTKLVLPRMKLKRRGIIVNMGSLSS----- 261
D P ++ ++ +N + LP +K + V + S++S
Sbjct: 63 MDGLVLCAGLGPQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAF 122
Query: 262 -----------------------RKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQY 298
YA +K + + + A E +++
Sbjct: 123 DKNPLALALEAGEEAKARAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNT 182
Query: 299 LYPGLVDTNMTKD 311
+ PG +T + +
Sbjct: 183 IAPGATETPLLQA 195
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 1.85A {Mycobacterium ulcerans}
Length = 257
Score = 60.3 bits (147), Expect = 1e-10
Identities = 35/194 (18%), Positives = 68/194 (35%), Gaps = 41/194 (21%)
Query: 155 KAFVVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEK----LKNTAEYI----------- 199
VV TG G+G A +L +V++ E L + A +
Sbjct: 10 AVAVV-TGGASGLGLATTKRLLDAGAQVVVLDIRGEDVVADLGDRARFAAADVTDEAAVA 68
Query: 200 ---------------LNNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTKLVLP 243
+N G + + + +I+ IN + + +L
Sbjct: 69 SALDLAETMGTLRIVVNCAGTGNAIRVLSRDGVFSLAA-FRKIVDINLVGSFNVLRLAAE 127
Query: 244 RM--------KLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQ 295
R+ + RG+I+N S+++ Y+A+K + + + +L + I+
Sbjct: 128 RIAKTEPVGPNAEERGVIINTASVAAFDGQIGQAAYSASKGGVVGMTLPIARDLASHRIR 187
Query: 296 VQYLYPGLVDTNMT 309
V + PGL DT +
Sbjct: 188 VMTIAPGLFDTPLL 201
Score = 57.2 bits (139), Expect = 1e-09
Identities = 29/173 (16%), Positives = 57/173 (32%), Gaps = 29/173 (16%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
VVTG G+G A L +V++ + + ++ + AD ++
Sbjct: 13 VVTGGASGLGLATTKRLLDAGAQVVVLDIRGEDV---VADL----GDRARFAAADVTDEA 65
Query: 62 QVYAHIEKELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMTRML 121
V + ++ + I+VN G + S + +N + R+
Sbjct: 66 AVASALDLAETMGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLA 125
Query: 122 LPHMKQRK--------RGMIVFVGSIV-------QVFKSPYFVNYSGTKAFVV 159
+ + + RG+I+ S+ Q YS +K VV
Sbjct: 126 AERIAKTEPVGPNAEERGVIINTASVAAFDGQIGQ-------AAYSASKGGVV 171
>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation,
peroxisome, SDR, oxido; 2.22A {Candida tropicalis}
Length = 604
Score = 61.6 bits (150), Expect = 1e-10
Identities = 45/189 (23%), Positives = 80/189 (42%), Gaps = 40/189 (21%)
Query: 157 FVVLTGSTDGIGKAYAIQLAKRKMNLVL--------------------------ISRSME 190
V++TG+ G+GK YA AK +V+ +++ E
Sbjct: 324 VVLITGAGAGLGKEYAKWFAKYGAKVVVNDFKDATKTVDEIKAAGGEAWPDQHDVAKDSE 383
Query: 191 KLKNTA--EY----IL-NNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTKLVL 242
+ +Y IL NN G++ RSF + W+ + ++ T +++L
Sbjct: 384 AIIKNVIDKYGTIDILVNNAGILRD----RSFAKMSKQE-WDSVQQVHLIGTFNLSRLAW 438
Query: 243 PRMKLKRRGIIVNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYPG 302
P K+ G I+N+ S S + NY+++KA + SK++ E + NI+V + P
Sbjct: 439 PYFVEKQFGRIINITSTSGIYGNFGQANYSSSKAGILGLSKTMAIEGAKNNIKVNIVAPH 498
Query: 303 LVDTNMTKD 311
+T MT
Sbjct: 499 -AETAMTLS 506
Score = 57.8 bits (140), Expect = 2e-09
Identities = 46/189 (24%), Positives = 81/189 (42%), Gaps = 36/189 (19%)
Query: 1 MVVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDT--ANEIRKQYDVEVKIIQADFS 58
+++TG+ G+GK YA AK +V+ ND A + V I+A
Sbjct: 325 VLITGAGAGLGKEYAKWFAKYGAKVVV--------NDFKDATKT-------VDEIKAAGG 369
Query: 59 EGLQVYAHIEKELQDM---------DVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITV 109
E + K+ + + + ILVNN GI R F +SK+ + V
Sbjct: 370 EAWPDQHDVAKDSEAIIKNVIDKYGTIDILVNNAGILRD----RSFAKMSKQEWDSVQQV 425
Query: 110 NTGAPSQMTRMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGK 169
+ ++R+ P+ +++ G I+ + S ++ + NYS +KA ++ G+ K
Sbjct: 426 HLIGTFNLSRLAWPYFVEKQFGRIINITSTSGIYGNFGQANYSSSKAGIL------GLSK 479
Query: 170 AYAIQLAKR 178
AI+ AK
Sbjct: 480 TMAIEGAKN 488
Score = 57.8 bits (140), Expect = 2e-09
Identities = 39/192 (20%), Positives = 77/192 (40%), Gaps = 34/192 (17%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQY------DVEVKIIQA 55
++TG+ G+GK Y++E AK +V+ ND + Q DV V I
Sbjct: 12 IITGAGGGLGKYYSLEFAKLGAKVVV--------NDLGGALNGQGGNSKAADVVVDEIVK 63
Query: 56 DFSEGLQVYAHIEKELQDM---------DVGILVNNVGIAPPHPTFRKFDDISKEHLYNE 106
+ + Y ++ + + V +++NN GI ++++
Sbjct: 64 NGGVAVADYNNVL-DGDKIVETAVKNFGTVHVIINNAGILRD----ASMKKMTEKDYKLV 118
Query: 107 ITVNTGAPSQMTRMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDG 166
I V+ +T+ P+ +++K G IV S ++ + NY+ K+ ++ G
Sbjct: 119 IDVHLNGAFAVTKAAWPYFQKQKYGRIVNTSSPAGLYGNFGQANYASAKSALL------G 172
Query: 167 IGKAYAIQLAKR 178
+ A + AK
Sbjct: 173 FAETLAKEGAKY 184
Score = 53.9 bits (130), Expect = 4e-08
Identities = 25/112 (22%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
Query: 201 NNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTKLVLPRMKLKRRGIIVNMGSL 259
NN G++ + + +++ + +I ++ +TK P + ++ G IVN S
Sbjct: 97 NNAGILRDASMKKM-----TEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYGRIVNTSSP 151
Query: 260 SSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYPGLVDTNMTKD 311
+ + NYA+ K+ + F+++L E +YNI+ + P + MT+
Sbjct: 152 AGLYGNFGQANYASAKSALLGFAETLAKEGAKYNIKANAIAPL-ARSRMTES 202
Score = 33.1 bits (76), Expect = 0.14
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 158 VVLTGSTDGIGKAYAIQLAKR 178
V++TG+ G+GK Y+++ AK
Sbjct: 11 VIITGAGGGLGKYYSLEFAKL 31
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2,
beta-oxidation, peroxisome, SDR, steroid biosynthesis,
oxidoreductase, NADP; HET: NAI; 2.38A {Rattus
norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Length = 319
Score = 58.9 bits (143), Expect = 6e-10
Identities = 45/192 (23%), Positives = 77/192 (40%), Gaps = 34/192 (17%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQY------DVEVKIIQA 55
+VTG+ G+G+AYA+ A+R +V+ ND + + D V+ I+
Sbjct: 13 LVTGAGGGLGRAYALAFAERGALVVV--------NDLGGDFKGVGKGSSAADKVVEEIRR 64
Query: 56 DFSEGLQVYAHIEKELQDM---------DVGILVNNVGIAPPHPTFRKFDDISKEHLYNE 106
+ + Y +E + + + ++VNN GI R F IS E
Sbjct: 65 RGGKAVANYDSVE-AGEKLVKTALDTFGRIDVVVNNAGILRD----RSFSRISDEDWDII 119
Query: 107 ITVNTGAPSQMTRMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDG 166
V+ Q+TR HMK++ G I+ S ++ + NYS K ++ G
Sbjct: 120 QRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYGNFGQANYSAAKLGLL------G 173
Query: 167 IGKAYAIQLAKR 178
+ I+ K
Sbjct: 174 LANTLVIEGRKN 185
Score = 53.9 bits (130), Expect = 2e-08
Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 7/112 (6%)
Query: 201 NNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTKLVLPRMKLKRRGIIVNMGSL 259
NN G++ R SD+ W+ I ++ + +T+ MK + G I+ S
Sbjct: 98 NNAGILRDRSFSRI-----SDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASA 152
Query: 260 SSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYPGLVDTNMTKD 311
S + NY+A K + + +L E + NI + P + MT+
Sbjct: 153 SGIYGNFGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPN-AGSRMTET 203
Score = 33.5 bits (77), Expect = 0.097
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 158 VVLTGSTDGIGKAYAIQLAKR 178
V++TG+ G+G+AYA+ A+R
Sbjct: 12 VLVTGAGGGLGRAYALAFAER 32
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease, oxidoreductase; HET:
EPE; 1.50A {Mycobacterium paratuberculosis}
Length = 291
Score = 56.5 bits (137), Expect = 3e-09
Identities = 46/229 (20%), Positives = 76/229 (33%), Gaps = 68/229 (29%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYILNNVGVV-----SPDPIF 212
VV+TG+ G+G A +LA+R +++ R K + A + V V +
Sbjct: 19 VVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTMAGQVEVRELDLQDLSSV- 77
Query: 213 RSFDATPSDQIWNEI---IINAGATA----------------------LMTKLVLPRMKL 247
R F + I NAG A +T L+LPR+
Sbjct: 78 RRFADG-----VSGADVLINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRL-- 130
Query: 248 KRRGIIVNMGSLSSR-------KPHPFLTNYAATKAYME------LFSKSLQAELYE--Y 292
R +V + S++ + Y+ AY + LF+ LQ L
Sbjct: 131 TDR--VVTVSSMAHWPGRINLEDLNWRSRRYSPWLAYSQSKLANLLFTSELQRRLTAAGS 188
Query: 293 NIQVQYLYPGLVDTN-------------MTKDNSLTAKNIPLSIQPILY 328
++ +PG TN M+ + A + + LY
Sbjct: 189 PLRALAAHPGYSHTNLQGASGRKLGDALMSAATRVVATDADFGARQTLY 237
Score = 55.3 bits (134), Expect = 7e-09
Identities = 34/144 (23%), Positives = 57/144 (39%), Gaps = 21/144 (14%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
V+TG+ G+G A ELA+R +++ R +K A + +V++ + D +
Sbjct: 20 VITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTMAG----QVEVRELDLQDLS 75
Query: 62 QVYAHIEKELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEIT--VNTGAPSQMTR 119
V + + D +L+NN GI P D E N +T
Sbjct: 76 SVRRFAD-GVSGAD--VLINNAGIMAV-PYALTVDGF-------ESQIGTNHLGHFALTN 124
Query: 120 MLLPHMKQRKRGMIVFVGSIVQVF 143
+LLP + R +V V S+
Sbjct: 125 LLLPRLTDR----VVTVSSMAHWP 144
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 56.3 bits (136), Expect = 7e-09
Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 7/112 (6%)
Query: 201 NNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTKLVLPRMKLKRRGIIVNMGSL 259
NN G++ RS T WN + ++ + T+ P MK + G I+ S
Sbjct: 108 NNAGILRD----RSLVKTSEQD-WNLVNDVHLKGSFKCTQAAFPYMKKQNYGRIIMTSSN 162
Query: 260 SSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYPGLVDTNMTKD 311
S + NY A K + + ++ E N+ + P + MT+
Sbjct: 163 SGIYGNFGQVNYTAAKMGLIGLANTVAIEGARNNVLCNVIVPT-AASRMTEG 213
Score = 54.0 bits (130), Expect = 3e-08
Identities = 44/185 (23%), Positives = 74/185 (40%), Gaps = 22/185 (11%)
Query: 2 VVTGSTDGIGKAYAIELAKR---------KMDLVLISRTLQKLNDTANEIRKQYDVEVKI 52
VVTG+ G+G+ YA+ A+R + + + +EIRK V
Sbjct: 23 VVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGEAVAD 82
Query: 53 IQADFSEGLQVYAHIEKELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTG 112
+G +V K +D ILVNN GI R S++ V+
Sbjct: 83 Y-NSVIDGAKVIETAIKAFGRVD--ILVNNAGILRD----RSLVKTSEQDWNLVNDVHLK 135
Query: 113 APSQMTRMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYA 172
+ T+ P+MK++ G I+ S ++ + VNY+ K ++ G+ A
Sbjct: 136 GSFKCTQAAFPYMKKQNYGRIIMTSSNSGIYGNFGQVNYTAAKMGLI------GLANTVA 189
Query: 173 IQLAK 177
I+ A+
Sbjct: 190 IEGAR 194
Score = 32.9 bits (75), Expect = 0.16
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 158 VVLTGSTDGIGKAYAIQLAKR 178
V+TG+ G+G+ YA+ A+R
Sbjct: 22 AVVTGAGAGLGREYALLFAER 42
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 55.2 bits (132), Expect = 2e-08
Identities = 76/444 (17%), Positives = 130/444 (29%), Gaps = 166/444 (37%)
Query: 37 DT-ANEIRKQY-DVEVKIIQADFSEGLQVYAHIEKELQDMDVGIL----VNNVGIAPPHP 90
D E + QY D+ + + + F + K++QDM IL ++++ I
Sbjct: 8 DFETGEHQYQYKDI-LSVFEDAFVDNFDC-----KDVQDMPKSILSKEEIDHI-IMSKDA 60
Query: 91 ---TFRKFD------------------DISKEHLYNEITVNTGAPSQMTRMLLPHMKQRK 129
T R F I+ + L + I PS MTRM +++QR
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM---YIEQRD 117
Query: 130 RGMIVFVGSIVQVFKSPYFVN------------YSGTKA-FVVLTGSTDGIGK------- 169
R + + QVF + Y V+ A V++ G G GK
Sbjct: 118 R-----LYNDNQVF-AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL-GSGKTWVALDV 170
Query: 170 --AYAIQLA------------KRKMNLVLISRSMEKLKNTAEYILNNVGVVSPDPIFRSF 215
+Y +Q VL ++KL + + S + R
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEM--LQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 216 DATPS-----------------DQIWNEIIINA---GATALMTKLVLPRMKLKRRGIIVN 255
+ N NA L+T R + +
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT---------TRFKQVTD 279
Query: 256 MGSLSSRKPHPFLTNYAA--TKAY-MELFSKSLQAELYEYNIQVQYLYPGLVDTN----- 307
S ++ H L +++ T L K L + + Q L ++ TN
Sbjct: 280 FLSAATTT-HISLDHHSMTLTPDEVKSLLLKYL-------DCRPQDLPREVLTTNPRRLS 331
Query: 308 ----MTKDNSLTAKN------------IPLSIQPILYPNA--RLYASWAV---------S 340
+D T N I S+ +L P +++ +V
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLN-VLEPAEYRKMFDRLSVFPPSAHIPTI 390
Query: 341 TLGLLRHTTGYW-------VFDIM 357
L L+ W V ++
Sbjct: 391 LLSLI------WFDVIKSDVMVVV 408
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 51.4 bits (123), Expect = 1e-07
Identities = 25/144 (17%), Positives = 45/144 (31%), Gaps = 23/144 (15%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
VV T +G A LA ++VL R L K A+ + K++ V V +
Sbjct: 123 VVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASR 182
Query: 62 QVYAHIEKELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNE------ITVNTGAPS 115
+ ++ V G + + + NE N P
Sbjct: 183 ------AEAVKGAHF---VFTAGAIG-------LELLPQAAWQNESSIEIVADYNAQPPL 226
Query: 116 QMTRMLLPHMKQRKRGMIVFVGSI 139
+ + K ++ G G++
Sbjct: 227 GIGGIDA-TDKGKEYGGKRAFGAL 249
Score = 46.0 bits (109), Expect = 8e-06
Identities = 18/82 (21%), Positives = 27/82 (32%), Gaps = 2/82 (2%)
Query: 152 SGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYILNNVGVVSPDPI 211
G KA V T +G A LA +VL R ++K + A+ + V
Sbjct: 118 KGKKAVV--LAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAE 175
Query: 212 FRSFDATPSDQIWNEIIINAGA 233
+ + AGA
Sbjct: 176 TADDASRAEAVKGAHFVFTAGA 197
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 1.80A {Mycobacterium avium}
Length = 322
Score = 50.8 bits (122), Expect = 2e-07
Identities = 40/200 (20%), Positives = 64/200 (32%), Gaps = 40/200 (20%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLV----------LISRTLQKLNDTANEIRK------- 44
+VTG+ GIG+A+A+ A +V + +EI
Sbjct: 31 IVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVA 90
Query: 45 -QYDVEVKIIQADFSEGLQVYAHIEKELQDMDVGILVNNVGIAPPHPTFRK-----FDDI 98
+V AD+ + + + +D +LVNN GI FD +
Sbjct: 91 DGSNV------ADWDQAAGLIQTAVETFGGLD--VLVNNAGIVRDR-MIANTSEEEFDAV 141
Query: 99 SKEHLYNEITVNTGAPSQMTRMLLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFV 158
HL A + R L K G I+ S + S NYS KA +
Sbjct: 142 IAVHLKGHFATMRHAAAYW-RGLSKAGKAV-DGRIINTSSGAGLQGSVGQGNYSAAKAGI 199
Query: 159 VLTGSTDGIGKAYAIQLAKR 178
+ A ++ +
Sbjct: 200 A------TLTLVGAAEMGRY 213
Score = 47.4 bits (113), Expect = 3e-06
Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 13/118 (11%)
Query: 201 NNVGVVSPDPIFRSFDATPSDQIWNEII-INAGATALMTKLVLPRMKLKRR------GII 253
NN G+V I + S++ ++ +I ++ + + + G I
Sbjct: 120 NNAGIVRDRMIANT-----SEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRI 174
Query: 254 VNMGSLSSRKPHPFLTNYAATKAYMELFSKSLQAELYEYNIQVQYLYPGLVDTNMTKD 311
+N S + + NY+A KA + + AE+ Y + V + P T MT+
Sbjct: 175 INTSSGAGLQGSVGQGNYSAAKAGIATLTLVGAAEMGRYGVTVNAIAPS-ARTRMTET 231
Score = 33.5 bits (77), Expect = 0.077
Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 18/58 (31%)
Query: 121 LLPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQLAKR 178
L Q M V G +V V++TG+ GIG+A+A+ A
Sbjct: 11 TLEAQTQGPGSMGVVDG---RV---------------VIVTGAGGGIGRAHALAFAAE 50
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design,
oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex
aeolicus} PDB: 2hk8_A 2hk7_A
Length = 275
Score = 34.4 bits (80), Expect = 0.041
Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 27/113 (23%)
Query: 1 MVVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEG 60
++V G+ G +A L K + L +RT +K A +
Sbjct: 132 ILVLGA-GGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKF-----------------P 173
Query: 61 LQVYAHIEKELQDMDVGILVN--NVGIAPPHPTFRKFDDISKEHL-----YNE 106
L+V E+ + + ++VN +VG+ P +D I K+H+ Y E
Sbjct: 174 LEVVNSPEEVIDKVQ--VIVNTTSVGLKDEDPEIFNYDLIKKDHVVVDIIYKE 224
Score = 31.3 bits (72), Expect = 0.35
Identities = 16/83 (19%), Positives = 26/83 (31%), Gaps = 14/83 (16%)
Query: 149 VNYSGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYILNNVGVVSP 208
V+ G G +A L K + L +R+ EK A+ V SP
Sbjct: 125 PEVKEKSILVLGAG---GASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKF-PLEVVNSP 180
Query: 209 DPIFRSFDATPSDQIWNEIIINA 231
+ + +I+N
Sbjct: 181 EEVIDKVQ----------VIVNT 193
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.47
Identities = 7/38 (18%), Positives = 17/38 (44%), Gaps = 10/38 (26%)
Query: 33 QKLNDTANEIRKQYDVE--VKIIQADFSEGLQVYAHIE 68
+K ++K ++ +K+ D + L + A +E
Sbjct: 18 EK-----QALKK---LQASLKLYADDSAPALAIKATME 47
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 1.40A {Lactococcus
lactis subsp}
Length = 219
Score = 30.4 bits (69), Expect = 0.64
Identities = 25/148 (16%), Positives = 53/148 (35%), Gaps = 38/148 (25%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYILNNVGVV------SPD-- 209
+ + GST +GK+ L+ + +R +E++ NNV V +P+
Sbjct: 3 IFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQ-----YNNVKAVHFDVDWTPEEM 57
Query: 210 -PIFRSFDATPSDQIWNEIIINAGATALMTKLVLPRMKL------KRRGI--IVNMGSLS 260
DA II +G+ V + ++ + + + ++
Sbjct: 58 AKQLHGMDA---------IINVSGSGGKSLLKVDLYGAVKLMQAAEKAEVKRFILLSTIF 108
Query: 261 SRKPHPF-------LTNYAATKAYMELF 281
S +P + L +Y K + +L+
Sbjct: 109 SLQPEKWIGAGFDALKDYYIAKHFADLY 136
>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH,
oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora
spinosa}
Length = 795
Score = 30.8 bits (70), Expect = 0.73
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRK--MNLVLISRS 188
V++TG T +G A L + NLVL+SR
Sbjct: 533 VLVTGGTGALGAEVARHLVIERGVRNLVLVSRR 565
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 30.1 bits (68), Expect = 0.82
Identities = 28/186 (15%), Positives = 62/186 (33%), Gaps = 33/186 (17%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
V+ G++ +G A E R ++ + R +K+ NE +K+ +AD S
Sbjct: 8 VLIGASGFVGSALLNEALNRGFEVTAVVRHPEKI-KIENE-------HLKVKKADVSS-- 57
Query: 62 QVYAHIEKELQDMDVGILVNNVGIAPPHPTFRKFDDISKEHLYNEITVNTGAPSQMTRML 121
+ + + D +++ +P ++ +
Sbjct: 58 --LDEVCEVCKGADA--VISAFNPGWNNPDIYDET------------------IKVYLTI 95
Query: 122 LPHMKQRKRGMIVFVGSIVQVFKSPYFVNYSGTKAFVVLTGSTDGIGKAYAIQLAKRK-M 180
+ +K+ + VG +F +P + + +G+ Y L K K +
Sbjct: 96 IDGVKKAGVNRFLMVGGAGSLFIAPGLRLMDSGEVPENILPGVKALGEFYLNFLMKEKEI 155
Query: 181 NLVLIS 186
+ V S
Sbjct: 156 DWVFFS 161
>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima
dehydrogenase; shikimate, NADPH, dehydroshikimate,
bifunctional enzyme; HET: DHK TLA NAP; 1.78A
{Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*
Length = 523
Score = 30.1 bits (68), Expect = 1.3
Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 11/80 (13%)
Query: 152 SGTKAFVVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYILNNVGVVSPDPI 211
+ V+ G G GKA A ++ +V+ +R+ E+ AE I ++
Sbjct: 363 ASKTVVVIGAG---GAGKALAYGAKEKGAKVVIANRTYERALELAEAIGGKALSLTDLDN 419
Query: 212 FRSFDATPSDQIWNEIIINA 231
+ D ++ N
Sbjct: 420 YHPEDGM--------VLANT 431
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 30.2 bits (68), Expect = 1.4
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKM-NLVLISRS 188
V+TG G G A L R LVL SRS
Sbjct: 1887 YVITGGLGGFGLQLAQWLRLRGAQKLVLTSRS 1918
Score = 29.8 bits (67), Expect = 2.0
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Query: 2 VVTGSTDGIGKAYAIELAKRKM-DLVLISRTLQKLNDTANEIR---KQYDVEVKIIQAD 56
V+TG G G A L R LVL SR+ + ++ V+V + ++
Sbjct: 1888 VITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIR-TGYQARQVREWRRQGVQVLVSTSN 1945
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein;
structural genomics, oxidoreductase, amino-acid
biosynthesis; 2.10A {Clostridium acetobutylicum}
Length = 282
Score = 29.0 bits (66), Expect = 2.0
Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 17/84 (20%)
Query: 149 VNYSGTKAFVVLTGSTDGIGKAYAIQLAKRK-MNLVLISRSMEKLKNTAEYILNNVGVVS 207
V V+ +G G +A L ++ +++R+ EK V+S
Sbjct: 118 VEIKNNICVVLGSG---GAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYG----EFKVIS 170
Query: 208 PDPIFRSFDATPSDQIWNEIIINA 231
D + + ++IIN
Sbjct: 171 YDEL---------SNLKGDVIINC 185
Score = 27.5 bits (62), Expect = 7.3
Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 1 MVVTGSTDGIGKAYAIELAKRK-MDLVLISRTLQKLNDTANEIRKQYDVEVKIIQAD 56
VV G + G +A L D+ +++R +K ++ E + E+ ++ D
Sbjct: 125 CVVLG-SGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFKVISYDELSNLKGD 180
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short
chain dehydrogenase reductase, flavonoi oxidoreductase;
HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A*
3i6q_A*
Length = 346
Score = 29.2 bits (65), Expect = 2.2
Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
++ G+T IG+ A +++R + A + D I+ +E
Sbjct: 14 LIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINE-- 71
Query: 62 QVYAHIEKELQDMDVGILVNNVGIA 86
+EK L++ ++ I+V+ VG
Sbjct: 72 --QEAMEKILKEHEIDIVVSTVGGE 94
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural
genomics, PSI-2, protein structure initiative; HET:
NDP; 1.78A {Lactobacillus casei atcc 334}
Length = 224
Score = 28.4 bits (63), Expect = 2.8
Identities = 16/92 (17%), Positives = 28/92 (30%), Gaps = 13/92 (14%)
Query: 2 VVTGSTDGIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGL 61
V G+T G A E +R +++ + R QK D V + +
Sbjct: 4 AVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLG-------ATVATLVKE----- 51
Query: 62 QVYAHIEKELQDMDVGILVNNVGIAPPHPTFR 93
E +L +D + +V
Sbjct: 52 -PLVLTEADLDSVDAVVDALSVPWGSGRGYLH 82
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MNB; 2.30A {Shigella flexneri 2A}
Length = 236
Score = 28.6 bits (64), Expect = 2.9
Identities = 13/80 (16%), Positives = 31/80 (38%), Gaps = 12/80 (15%)
Query: 2 VVTGSTDGIGKAYAIELAKRK-MDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEG 60
++ G+ I + +LA ++ + L +R K++ +II D
Sbjct: 27 LILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPT-------NSQIIMGDVLN- 78
Query: 61 LQVYAHIEKELQDMDVGILV 80
+A +++ +Q D+
Sbjct: 79 ---HAALKQAMQGQDIVYAN 95
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.2 bits (65), Expect = 2.9
Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 14/68 (20%)
Query: 204 GVVSPDPIFRSFDATPSDQIWN--EIIINAGAT-----ALMTKLVLPRMKLKRRGIIVN- 255
G + + IF+ + + + + +++ AT AL LK +G+I
Sbjct: 1699 GKLKTEKIFKEINEHSTSYTFRSEKGLLS--ATQFTQPALTLMEKAAFEDLKSKGLIPAD 1756
Query: 256 ---MG-SL 259
G SL
Sbjct: 1757 ATFAGHSL 1764
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A*
1e5q_A
Length = 450
Score = 28.7 bits (63), Expect = 3.6
Identities = 24/196 (12%), Positives = 55/196 (28%), Gaps = 35/196 (17%)
Query: 9 GIGKAYAIELAKRKMDLVLISRTLQKLNDTANEIRKQYDVEVKIIQADFSEGLQVYAHIE 68
+ + L + + + RTL+ + ++ I D ++ A ++
Sbjct: 13 FVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQH-----STPISLDVND----DAALD 63
Query: 69 KELQDMDVGIL------------------VNNVGIAPPHPTFRKFDDISKEH---LYNEI 107
E+ D+ I + V + P + D +K+ + NEI
Sbjct: 64 AEVAKHDLVISLIPYTFHATVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGITVMNEI 123
Query: 108 TVNTGAPSQMTRMLLPHMKQRKRGMIVF---VGSIVQVFKSPYFVNYSGTKAFVVLTGST 164
++ G + + + F G + S + Y + +
Sbjct: 124 GLDPGIDHLYAIKTIEEVHAAGGKIKTFLSYCGGLPAPESSDNPLGYKFS--WSSRGVLL 181
Query: 165 DGIGKAYAIQLAKRKM 180
A + K
Sbjct: 182 ALRNAASFYKDGKVTN 197
>4ddp_A Beclin-1; ECD, autophagy, membrane binding, membrane protein; 1.55A
{Homo sapiens}
Length = 210
Score = 27.6 bits (61), Expect = 4.6
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 7/60 (11%)
Query: 224 WNEIIINAGATALMTKLVLPRMKLKRRGI-IVNMGSLSSRKPHPFLTNYAATKAYMELFS 282
WNEI G T L+ + +M LK + +V G+ H +L + + L+
Sbjct: 60 WNEINAAWGQTVLLLHALANKMGLKFQRYRLVPYGN------HSYLESLTDKSKELPLYC 113
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics,
APC7755, NADP, P protein structure initiative; HET: MSE
NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 27.7 bits (62), Expect = 6.0
Identities = 19/138 (13%), Positives = 48/138 (34%), Gaps = 22/138 (15%)
Query: 158 VVLTGSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYILNNVGVVS-PDPIFRSFD 216
V++ G+ + + +L + V + R+ E+ E +++ V + + +F
Sbjct: 24 VLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAFA 83
Query: 217 ----------ATPSDQIWNEIIINAGATALMTKLVLPRMKLKRRGI--IVNMGSLSSRKP 264
+ P I+I+ + ++RGI + + S+ + P
Sbjct: 84 SIDAVVFAAGSGPHTGADKTILIDLWG----AIKTIQEA--EKRGIKRFIMVSSVGTVDP 137
Query: 265 HPF---LTNYAATKAYME 279
+ +Y K +
Sbjct: 138 DQGPMNMRHYLVAKRLAD 155
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold,
structural genomics; HET: NAP F42; 1.65A {Archaeoglobus
fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Length = 212
Score = 27.5 bits (60), Expect = 6.1
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 162 GSTDGIGKAYAIQLAKRKMNLVLISRSMEKLKNTAEYILNNVG 204
G T +GK A++LA +V+ SR EK + A G
Sbjct: 7 GGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAG 49
>3n0r_A Response regulator; sigma factor, receiver, two-component SI
transduction, signaling protein; HET: MSE GOL; 1.25A
{Caulobacter vibrioides} PDB: 3t0y_A
Length = 286
Score = 27.1 bits (60), Expect = 8.8
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 15 AIELAKR-KMDLVLISRTLQ-KLN--DTANEIRKQYDVEV 50
A+E R LVL L + D +I + DV V
Sbjct: 197 ALEAVTRRTPGLVLADIQLADGSSGIDAVKDILGRMDVPV 236
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.385
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,401,419
Number of extensions: 329432
Number of successful extensions: 1948
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1244
Number of HSP's successfully gapped: 542
Length of query: 357
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 262
Effective length of database: 4,049,298
Effective search space: 1060916076
Effective search space used: 1060916076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (25.9 bits)