Query psy7514
Match_columns 347
No_of_seqs 263 out of 1103
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 20:19:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7514.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7514hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3386|consensus 100.0 4E-35 8.6E-40 257.9 16.7 141 185-347 13-153 (155)
2 PF04145 Ctr: Ctr copper trans 100.0 8.3E-36 1.8E-40 257.1 4.2 141 188-332 1-144 (144)
3 KOG3386|consensus 99.7 2.6E-17 5.6E-22 145.1 8.5 91 48-138 12-105 (155)
4 PF04145 Ctr: Ctr copper trans 99.5 8.1E-15 1.8E-19 126.3 1.5 56 52-107 1-57 (144)
5 PF11446 DUF2897: Protein of u 90.0 0.2 4.2E-06 37.1 1.8 26 311-336 1-26 (55)
6 PF08114 PMP1_2: ATPase proteo 72.9 4.3 9.3E-05 28.2 2.8 32 74-105 7-38 (43)
7 PF14012 DUF4229: Protein of u 58.0 27 0.00058 26.8 5.0 47 288-337 4-56 (69)
8 PF03672 UPF0154: Uncharacteri 57.3 7.8 0.00017 29.5 1.9 20 316-335 2-21 (64)
9 PF08114 PMP1_2: ATPase proteo 57.3 12 0.00026 26.1 2.6 32 210-241 7-38 (43)
10 PF13829 DUF4191: Domain of un 51.8 27 0.00059 32.9 5.0 41 297-337 36-76 (224)
11 PF07219 HemY_N: HemY protein 49.1 51 0.0011 27.0 5.7 34 62-95 3-38 (108)
12 COG3763 Uncharacterized protei 48.3 15 0.00032 28.5 2.1 21 315-335 8-28 (71)
13 PRK01844 hypothetical protein; 42.9 20 0.00043 28.0 2.1 18 317-334 10-27 (72)
14 PF12273 RCR: Chitin synthesis 39.1 32 0.00069 29.2 3.1 21 211-231 2-22 (130)
15 PF07219 HemY_N: HemY protein 39.0 85 0.0018 25.7 5.6 21 199-219 4-24 (108)
16 COG2991 Uncharacterized protei 37.6 25 0.00053 27.5 1.9 19 315-333 8-26 (77)
17 PRK00523 hypothetical protein; 36.9 28 0.00061 27.1 2.1 18 317-334 11-28 (72)
18 PF10031 DUF2273: Small integr 32.5 1.2E+02 0.0026 21.9 4.8 32 300-331 14-49 (51)
19 PRK10334 mechanosensitive chan 32.4 4.2E+02 0.0092 25.6 10.1 41 290-330 68-110 (286)
20 PF09578 Spore_YabQ: Spore cor 31.4 2.5E+02 0.0054 21.8 8.7 21 314-334 60-80 (80)
21 PRK02919 oxaloacetate decarbox 31.1 80 0.0017 25.1 4.0 26 300-326 7-32 (82)
22 PRK15051 4-amino-4-deoxy-L-ara 31.0 1.8E+02 0.0039 24.0 6.3 46 291-337 38-90 (111)
23 PF06376 DUF1070: Protein of u 29.2 48 0.001 22.2 2.0 13 299-311 15-27 (34)
24 PRK11431 multidrug efflux syst 28.6 1.8E+02 0.004 24.0 5.9 45 293-337 32-83 (105)
25 TIGR00540 hemY_coli hemY prote 27.5 1.2E+02 0.0025 30.5 5.4 29 59-87 24-53 (409)
26 PRK13664 hypothetical protein; 27.3 1.2E+02 0.0027 22.7 4.0 31 75-105 5-35 (62)
27 PF07125 DUF1378: Protein of u 25.8 1.1E+02 0.0025 22.6 3.6 27 80-106 11-37 (59)
28 PRK13664 hypothetical protein; 25.5 1.4E+02 0.003 22.4 4.0 31 211-241 5-35 (62)
29 PF11085 YqhR: Conserved membr 25.3 3.8E+02 0.0083 24.4 7.7 22 311-332 132-153 (173)
30 PRK10747 putative protoheme IX 24.8 1.6E+02 0.0034 29.5 5.8 28 62-89 28-55 (398)
31 TIGR00540 hemY_coli hemY prote 24.3 1.2E+02 0.0027 30.3 5.0 24 200-223 30-53 (409)
32 PRK02898 cobalt transport prot 24.0 52 0.0011 27.3 1.8 27 290-332 65-91 (100)
33 PF03248 Rer1: Rer1 family; I 23.7 5.6E+02 0.012 23.3 10.1 17 210-226 27-43 (176)
34 PRK10650 multidrug efflux syst 23.4 2.6E+02 0.0055 23.3 5.9 45 293-337 38-89 (109)
35 PF12794 MscS_TM: Mechanosensi 23.2 2.4E+02 0.0051 28.0 6.6 19 288-306 305-323 (340)
36 PRK10255 PTS system N-acetyl g 22.9 98 0.0021 33.7 4.1 37 298-335 74-115 (648)
37 PF06612 DUF1146: Protein of u 22.5 69 0.0015 22.9 2.0 13 318-330 34-46 (48)
38 PF10086 DUF2324: Putative mem 22.3 1.2E+02 0.0026 28.5 4.1 30 75-104 59-89 (223)
39 COG5547 Small integral membran 22.2 2.3E+02 0.005 21.3 4.7 35 290-331 15-49 (62)
40 COG3667 PcoB Uncharacterized p 22.0 1.1E+02 0.0023 29.9 3.7 19 173-191 66-84 (321)
41 PF13980 UPF0370: Uncharacteri 22.0 1.2E+02 0.0027 22.8 3.2 25 81-105 10-34 (63)
42 PF12273 RCR: Chitin synthesis 22.0 1.1E+02 0.0024 25.9 3.5 21 213-233 7-27 (130)
43 PF14316 DUF4381: Domain of un 21.6 1.3E+02 0.0028 25.9 3.9 33 67-99 15-47 (146)
44 PRK10747 putative protoheme IX 21.6 1.5E+02 0.0032 29.7 4.9 25 200-224 30-54 (398)
45 COG5336 Uncharacterized protei 20.9 85 0.0018 26.6 2.4 22 310-331 45-66 (116)
46 PRK09174 F0F1 ATP synthase sub 20.4 3.4E+02 0.0073 25.0 6.6 16 212-227 55-70 (204)
No 1
>KOG3386|consensus
Probab=100.00 E-value=4e-35 Score=257.86 Aligned_cols=141 Identities=45% Similarity=0.686 Sum_probs=114.9
Q ss_pred CCceeeEEEccccceEEecCceeCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccccC
Q psy7514 185 HMGMSMAFHWGYNEVILFNQWKISTPSGLIASMVGIFFLAALYEGVKYYREYLFWKTYNDLHYRSIPAQQRISSVEENKD 264 (347)
Q Consensus 185 ~~~M~M~F~~~~~~~lLF~~W~i~S~~~y~~sci~iflLav~~E~Lk~~R~~l~~k~~~~~~~~~~~~~~~~~s~~~~~~ 264 (347)
+|+|+|+|+|++++++||++|+++|.++|+++|+++|+++++||+||+.|+.++++.....+.+. +...
T Consensus 13 ~~~m~M~f~~~~~~~iLF~~W~~~s~~~~~ls~i~iflla~l~E~Lk~~r~~~~~~~~~~~~~~~----------~~~~- 81 (155)
T KOG3386|consen 13 TMMMMMFFHFKTIETILFSSWHITSAGGMALSCIAIFLLAVLYEALKFGREKLFRWQQLRQPTGH----------GHEI- 81 (155)
T ss_pred CCceEEEEecCceeEEEEcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC----------Cccc-
Confidence 58999999999998899999999999999999999999999999999999998766533211110 0000
Q ss_pred CCCCcccccccccCCCchhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhcccccccccCCCC
Q psy7514 265 TAKVVPVCDVLQKQPPSMLMLSMPHFIQTLLHVLQITMSFLLMLVFMTYNVALCIAVVAGAACGYFLFGWKKSVIVDVTE 344 (347)
Q Consensus 265 ~~~~~~l~~~~~~~~p~~~~~~~~~lira~L~~vq~~lsYlLMLivMTyN~~lflAVvlG~~lG~fiFg~~~~~~~~~s~ 344 (347)
|+. .|+....+..|++|++||++|++++|+|||++||||+|+||||++|+++|||+|+.++....+.++
T Consensus 82 -----~~~------~~s~~~~~~~h~~qt~l~~~Q~~~sY~LMLifMtfN~~l~Lavv~Ga~~G~flF~~~~~~~~~~~~ 150 (155)
T KOG3386|consen 82 -----PLS------GPSKLLNSASHLIQTLLYVVQLGFSYLLMLIFMTFNGYLFLAVVLGAGVGYFLFGSLTFTPTSEAE 150 (155)
T ss_pred -----ccc------CcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhheeeeccccCCCccc
Confidence 110 011001145799999999999999999999999999999999999999999999999985557888
Q ss_pred CCC
Q psy7514 345 HCH 347 (347)
Q Consensus 345 ~Ch 347 (347)
|||
T Consensus 151 ~c~ 153 (155)
T KOG3386|consen 151 HCH 153 (155)
T ss_pred ccc
Confidence 886
No 2
>PF04145 Ctr: Ctr copper transporter family; InterPro: IPR007274 The redox active metal copper is an essential cofactor in critical biological processes such as respiration, iron transport, oxidative stress protection, hormone production, and pigmentation. A widely conserved family of high-affinity copper transport proteins (Ctr proteins) mediates copper uptake at the plasma membrane. A series of clustered methionine residues in the hydrophilic extracellular domain, and an MXXXM motif in the second transmembrane domain, are important for copper uptake. These methionines probably coordinate copper during the process of metal transport.; GO: 0005375 copper ion transmembrane transporter activity, 0035434 copper ion transmembrane transport, 0016021 integral to membrane; PDB: 2LS4_A 2LS2_A 2LS3_A.
Probab=100.00 E-value=8.3e-36 Score=257.10 Aligned_cols=141 Identities=39% Similarity=0.606 Sum_probs=58.7
Q ss_pred eeeEEEccc-cceEEecCceeCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccc--cCCcccccccC
Q psy7514 188 MSMAFHWGY-NEVILFNQWKISTPSGLIASMVGIFFLAALYEGVKYYREYLFWKTYNDLHYRSIPAQ--QRISSVEENKD 264 (347)
Q Consensus 188 M~M~F~~~~-~~~lLF~~W~i~S~~~y~~sci~iflLav~~E~Lk~~R~~l~~k~~~~~~~~~~~~~--~~~~s~~~~~~ 264 (347)
|+|+|+|++ +++|||++|+++|.++|+++|+++|++|+++|+||++|.+++++..++.+.++.+.+ .+..++..+.+
T Consensus 1 M~M~F~~~~~~~~lLF~~W~~~s~~~~~~sci~~f~lav~~e~L~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (144)
T PF04145_consen 1 MSMYFHWGTIRDCLLFKSWKPSSAGAYVGSCIGVFLLAVLYEFLKALRRRLERRWARRRSRRASCSSSESRSRSDASSKS 80 (144)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHTTT-------------------------------------
T ss_pred CeeEEEcCCCccEEEeCCcEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCcccCCCccccccc
Confidence 899999999 677999999999999999999999999999999999999988776543322211111 11100000000
Q ss_pred CCCCcccccccccCCCchhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhc
Q psy7514 265 TAKVVPVCDVLQKQPPSMLMLSMPHFIQTLLHVLQITMSFLLMLVFMTYNVALCIAVVAGAACGYFLF 332 (347)
Q Consensus 265 ~~~~~~l~~~~~~~~p~~~~~~~~~lira~L~~vq~~lsYlLMLivMTyN~~lflAVvlG~~lG~fiF 332 (347)
++.. +........+ ......+++|+++|++|++++|+|||+|||||+|+|+||++|+++||++|
T Consensus 81 ~~~~-~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~l~Y~LMLvvMTyN~~l~~aVv~G~~~G~~~F 144 (144)
T PF04145_consen 81 SPSP-SSTSPRSSRR---RWFWSQHLIRALLHFVQVLLGYLLMLVVMTYNVYLFIAVVLGAGLGYFLF 144 (144)
T ss_dssp -------------------------SHHHHHHHHHHHHHHHHHHHHHHTT--SSSHHHHHHTTSS-GG
T ss_pred cccc-ccccccCCCC---CccHHHHHHHHHHHHHHHHHHHHHHHhhhheeHHHHHHHHHHHHHheeeC
Confidence 0000 0000011111 12346799999999999999999999999999999999999999999998
No 3
>KOG3386|consensus
Probab=99.71 E-value=2.6e-17 Score=145.12 Aligned_cols=91 Identities=29% Similarity=0.384 Sum_probs=69.2
Q ss_pred CCCcceeEEEcccceeEEecCceecCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCC-CCccCcccc-cc-
Q psy7514 48 DHMGMSMAFHWGYNEVILFNQWKISTPSGLIASMVGIFFLAALYEGVKYYREYLFWKTYNDLHYRS-IPAQQRISS-VE- 124 (347)
Q Consensus 48 ~~~~M~M~F~~~~~~~ilF~~W~i~s~~~~~~Sci~ifllav~yE~Lk~~r~~l~~~~~~~~~~~~-~~~~~~~~~-~~- 124 (347)
++|+|.|+|+|++++||||++|+++|.++|++|||+||+++++||+||+.|++++++.+.+..++. ...|....+ ..
T Consensus 12 ~~~~m~M~f~~~~~~~iLF~~W~~~s~~~~~ls~i~iflla~l~E~Lk~~r~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 91 (155)
T KOG3386|consen 12 QTMMMMMFFHFKTIETILFSSWHITSAGGMALSCIAIFLLAVLYEALKFGREKLFRWQQLRQPTGHGHEIPLSGPSKLLN 91 (155)
T ss_pred CCCceEEEEecCceeEEEEcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccccccCcchhhh
Confidence 389999999999999999999999999999999999999999999999999999987665444433 111111111 01
Q ss_pred cccccccccccccc
Q psy7514 125 ENKDTAKVVPLGMD 138 (347)
Q Consensus 125 ~~~~~~~~~~~g~~ 138 (347)
...++..+++|+++
T Consensus 92 ~~~h~~qt~l~~~Q 105 (155)
T KOG3386|consen 92 SASHLIQTLLYVVQ 105 (155)
T ss_pred hHHHHHHHHHHHHH
Confidence 33466666666654
No 4
>PF04145 Ctr: Ctr copper transporter family; InterPro: IPR007274 The redox active metal copper is an essential cofactor in critical biological processes such as respiration, iron transport, oxidative stress protection, hormone production, and pigmentation. A widely conserved family of high-affinity copper transport proteins (Ctr proteins) mediates copper uptake at the plasma membrane. A series of clustered methionine residues in the hydrophilic extracellular domain, and an MXXXM motif in the second transmembrane domain, are important for copper uptake. These methionines probably coordinate copper during the process of metal transport.; GO: 0005375 copper ion transmembrane transporter activity, 0035434 copper ion transmembrane transport, 0016021 integral to membrane; PDB: 2LS4_A 2LS2_A 2LS3_A.
Probab=99.48 E-value=8.1e-15 Score=126.25 Aligned_cols=56 Identities=41% Similarity=0.734 Sum_probs=19.0
Q ss_pred ceeEEEccc-ceeEEecCceecCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy7514 52 MSMAFHWGY-NEVILFNQWKISTPSGLIASMVGIFFLAALYEGVKYYREYLFWKTYN 107 (347)
Q Consensus 52 M~M~F~~~~-~~~ilF~~W~i~s~~~~~~Sci~ifllav~yE~Lk~~r~~l~~~~~~ 107 (347)
|+|+|+|++ ++||||++|+++|.++|+++||++|+|+++||+||.+|+++++|...
T Consensus 1 M~M~F~~~~~~~~lLF~~W~~~s~~~~~~sci~~f~lav~~e~L~~~r~~~~~~~~~ 57 (144)
T PF04145_consen 1 MSMYFHWGTIRDCLLFKSWKPSSAGAYVGSCIGVFLLAVLYEFLKALRRRLERRWAR 57 (144)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHTTT--------------
T ss_pred CeeEEEcCCCccEEEeCCcEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999 79999999999999999999999999999999999999999876543
No 5
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=90.04 E-value=0.2 Score=37.05 Aligned_cols=26 Identities=27% Similarity=0.175 Sum_probs=22.4
Q ss_pred HhhhhHHHHHHHHhhhhhhhhccccc
Q psy7514 311 MTYNVALCIAVVAGAACGYFLFGWKK 336 (347)
Q Consensus 311 MTyN~~lflAVvlG~~lG~fiFg~~~ 336 (347)
||+|+|+|+.|++|..+|.+.-=+.+
T Consensus 1 ~~~~~wlIIviVlgvIigNia~LK~s 26 (55)
T PF11446_consen 1 STWNPWLIIVIVLGVIIGNIAALKYS 26 (55)
T ss_pred CcchhhHHHHHHHHHHHhHHHHHHHh
Confidence 78999999999999999998765443
No 6
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=72.93 E-value=4.3 Score=28.21 Aligned_cols=32 Identities=19% Similarity=0.245 Sum_probs=26.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7514 74 PSGLIASMVGIFFLAALYEGVKYYREYLFWKT 105 (347)
Q Consensus 74 ~~~~~~Sci~ifllav~yE~Lk~~r~~l~~~~ 105 (347)
+++-++-++.+++.++..-++-.||+|++||.
T Consensus 7 p~GVIlVF~lVglv~i~iva~~iYRKw~aRkr 38 (43)
T PF08114_consen 7 PGGVILVFCLVGLVGIGIVALFIYRKWQARKR 38 (43)
T ss_pred CCCeeeehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777888889999999999999999874
No 7
>PF14012 DUF4229: Protein of unknown function (DUF4229)
Probab=58.05 E-value=27 Score=26.80 Aligned_cols=47 Identities=21% Similarity=0.239 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh------hHHHHHHHHhhhhhhhhcccccc
Q psy7514 288 PHFIQTLLHVLQITMSFLLMLVFMTYN------VALCIAVVAGAACGYFLFGWKKS 337 (347)
Q Consensus 288 ~~lira~L~~vq~~lsYlLMLivMTyN------~~lflAVvlG~~lG~fiFg~~~~ 337 (347)
+-+.|..+..+-+.+ ++++....- ...++|++++..++|++|.+.|.
T Consensus 4 Ytl~Rl~lfv~~~~v---i~~v~~~~~~~~p~~~~~l~A~vis~~lS~~ll~~~R~ 56 (69)
T PF14012_consen 4 YTLARLGLFVVLFAV---IWLVGLLIGVEVPLLVAALLALVISMPLSYVLLRRLRD 56 (69)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666655554 445555555 67899999999999999998864
No 8
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=57.35 E-value=7.8 Score=29.54 Aligned_cols=20 Identities=25% Similarity=0.523 Sum_probs=16.0
Q ss_pred HHHHHHHHhhhhhhhhcccc
Q psy7514 316 ALCIAVVAGAACGYFLFGWK 335 (347)
Q Consensus 316 ~lflAVvlG~~lG~fiFg~~ 335 (347)
+++++.++|+++|+|+-.+.
T Consensus 2 ~iilali~G~~~Gff~ar~~ 21 (64)
T PF03672_consen 2 LIILALIVGAVIGFFIARKY 21 (64)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999885443
No 9
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=57.32 E-value=12 Score=26.07 Aligned_cols=32 Identities=19% Similarity=0.245 Sum_probs=25.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy7514 210 PSGLIASMVGIFFLAALYEGVKYYREYLFWKT 241 (347)
Q Consensus 210 ~~~y~~sci~iflLav~~E~Lk~~R~~l~~k~ 241 (347)
++.-++-++++++.++..-.+-.||++..||.
T Consensus 7 p~GVIlVF~lVglv~i~iva~~iYRKw~aRkr 38 (43)
T PF08114_consen 7 PGGVILVFCLVGLVGIGIVALFIYRKWQARKR 38 (43)
T ss_pred CCCeeeehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667788888888888999999987764
No 10
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=51.84 E-value=27 Score=32.94 Aligned_cols=41 Identities=17% Similarity=0.268 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhcccccc
Q psy7514 297 VLQITMSFLLMLVFMTYNVALCIAVVAGAACGYFLFGWKKS 337 (347)
Q Consensus 297 ~vq~~lsYlLMLivMTyN~~lflAVvlG~~lG~fiFg~~~~ 337 (347)
.+-+.+..+|-|++=..=.|++++|++|+.+..++|+++..
T Consensus 36 l~~~~v~v~ig~l~~~~~~~~i~gi~~g~l~am~vl~rra~ 76 (224)
T PF13829_consen 36 LGPIAVFVLIGLLFGSWWYWLIIGILLGLLAAMIVLSRRAQ 76 (224)
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666666677899999999999999999853
No 11
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=49.14 E-value=51 Score=26.99 Aligned_cols=34 Identities=15% Similarity=0.274 Sum_probs=20.9
Q ss_pred eeEEecCceecCchhHHHHHHHHHHHH--HHHHHHH
Q psy7514 62 EVILFNQWKISTPSGLIASMVGIFFLA--ALYEGVK 95 (347)
Q Consensus 62 ~~ilF~~W~i~s~~~~~~Sci~iflla--v~yE~Lk 95 (347)
..|-|..|+|.+..-.++..+++++++ +++..++
T Consensus 3 V~I~~~~~~ie~sl~~~~~~l~~~~~~l~ll~~ll~ 38 (108)
T PF07219_consen 3 VLISWGGYRIETSLWVALILLLLLFVVLYLLLRLLR 38 (108)
T ss_pred EEEEECCEEEEeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999776665544433332 3444444
No 12
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.34 E-value=15 Score=28.55 Aligned_cols=21 Identities=24% Similarity=0.531 Sum_probs=17.1
Q ss_pred hHHHHHHHHhhhhhhhhcccc
Q psy7514 315 VALCIAVVAGAACGYFLFGWK 335 (347)
Q Consensus 315 ~~lflAVvlG~~lG~fiFg~~ 335 (347)
.++.+|+++|+++|||+-.+.
T Consensus 8 l~ivl~ll~G~~~G~fiark~ 28 (71)
T COG3763 8 LLIVLALLAGLIGGFFIARKQ 28 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999998886554
No 13
>PRK01844 hypothetical protein; Provisional
Probab=42.87 E-value=20 Score=27.97 Aligned_cols=18 Identities=39% Similarity=0.575 Sum_probs=13.5
Q ss_pred HHHHHHHhhhhhhhhccc
Q psy7514 317 LCIAVVAGAACGYFLFGW 334 (347)
Q Consensus 317 lflAVvlG~~lG~fiFg~ 334 (347)
+++++++|+++|+|+-.+
T Consensus 10 ~I~~li~G~~~Gff~ark 27 (72)
T PRK01844 10 GVVALVAGVALGFFIARK 27 (72)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467788899999887443
No 14
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=39.12 E-value=32 Score=29.19 Aligned_cols=21 Identities=14% Similarity=-0.018 Sum_probs=9.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q psy7514 211 SGLIASMVGIFFLAALYEGVK 231 (347)
Q Consensus 211 ~~y~~sci~iflLav~~E~Lk 231 (347)
|.+++.+|++|+|.++.-++.
T Consensus 2 W~l~~iii~~i~l~~~~~~~~ 22 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFYCH 22 (130)
T ss_pred eeeHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333
No 15
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=39.01 E-value=85 Score=25.65 Aligned_cols=21 Identities=14% Similarity=0.203 Sum_probs=14.6
Q ss_pred eEEecCceeCChhhHHHHHHH
Q psy7514 199 VILFNQWKISTPSGLIASMVG 219 (347)
Q Consensus 199 ~lLF~~W~i~S~~~y~~sci~ 219 (347)
.|-|.+|.+++..-.++..++
T Consensus 4 ~I~~~~~~ie~sl~~~~~~l~ 24 (108)
T PF07219_consen 4 LISWGGYRIETSLWVALILLL 24 (108)
T ss_pred EEEECCEEEEeeHHHHHHHHH
Confidence 488999999997555444433
No 16
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.59 E-value=25 Score=27.53 Aligned_cols=19 Identities=26% Similarity=0.564 Sum_probs=15.5
Q ss_pred hHHHHHHHHhhhhhhhhcc
Q psy7514 315 VALCIAVVAGAACGYFLFG 333 (347)
Q Consensus 315 ~~lflAVvlG~~lG~fiFg 333 (347)
.++|+.|++|..+||.+=.
T Consensus 8 Fg~Fllvi~gMsiG~I~kr 26 (77)
T COG2991 8 FGIFLLVIAGMSIGYIFKR 26 (77)
T ss_pred HHHHHHHHHHHhHhhheec
Confidence 4688999999999996543
No 17
>PRK00523 hypothetical protein; Provisional
Probab=36.88 E-value=28 Score=27.15 Aligned_cols=18 Identities=22% Similarity=0.311 Sum_probs=13.0
Q ss_pred HHHHHHHhhhhhhhhccc
Q psy7514 317 LCIAVVAGAACGYFLFGW 334 (347)
Q Consensus 317 lflAVvlG~~lG~fiFg~ 334 (347)
+++++++|+++|+|+-.+
T Consensus 11 ~i~~li~G~~~Gffiark 28 (72)
T PRK00523 11 GIPLLIVGGIIGYFVSKK 28 (72)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456778888888887433
No 18
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=32.52 E-value=1.2e+02 Score=21.90 Aligned_cols=32 Identities=19% Similarity=0.368 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhhhhH----HHHHHHHhhhhhhhh
Q psy7514 300 ITMSFLLMLVFMTYNVA----LCIAVVAGAACGYFL 331 (347)
Q Consensus 300 ~~lsYlLMLivMTyN~~----lflAVvlG~~lG~fi 331 (347)
..+++++=+++++|=.| +++.+++|..+|..+
T Consensus 14 ~~~G~ila~l~l~~GF~~tl~i~~~~~iG~~iG~~~ 49 (51)
T PF10031_consen 14 GLIGLILALLILTFGFWKTLFILLFAAIGYYIGKYL 49 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555666666555 556667888888653
No 19
>PRK10334 mechanosensitive channel MscS; Provisional
Probab=32.36 E-value=4.2e+02 Score=25.61 Aligned_cols=41 Identities=29% Similarity=0.361 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH--Hhhhhhhh
Q psy7514 290 FIQTLLHVLQITMSFLLMLVFMTYNVALCIAVV--AGAACGYF 330 (347)
Q Consensus 290 lira~L~~vq~~lsYlLMLivMTyN~~lflAVv--lG~~lG~f 330 (347)
++..++..+-+.+..++-|-.+-+|..-+++++ +|+++|..
T Consensus 68 ~~~~~~~~~i~~~~~~~~l~~lGi~~~~l~a~~G~~glaiG~a 110 (286)
T PRK10334 68 FLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLAVGLA 110 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555666677777666664 45555544
No 20
>PF09578 Spore_YabQ: Spore cortex protein YabQ (Spore_YabQ); InterPro: IPR019074 This protein is predicted to span the membrane several times. It is only found in genomes of species that perform sporulation, such as Bacillus subtilis, Clostridium tetani, and other members of the Firmicutes (low-GC Gram-positive bacteria). Mutation of this sigmaE-dependent gene blocks development of the spore cortex. The length of the C-terminal region, which includes some hydrophobic regions, is variable.
Probab=31.39 E-value=2.5e+02 Score=21.76 Aligned_cols=21 Identities=10% Similarity=0.216 Sum_probs=16.2
Q ss_pred hhHHHHHHHHhhhhhhhhccc
Q psy7514 314 NVALCIAVVAGAACGYFLFGW 334 (347)
Q Consensus 314 N~~lflAVvlG~~lG~fiFg~ 334 (347)
..|+++++++|..+=+.++.+
T Consensus 60 R~Y~~lg~~~G~~lY~~~lsr 80 (80)
T PF09578_consen 60 RFYIFLGILLGMILYFRLLSR 80 (80)
T ss_pred eHHHHHHHHHHHHHHHHHhcC
Confidence 457999999999887766543
No 21
>PRK02919 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=31.07 E-value=80 Score=25.13 Aligned_cols=26 Identities=23% Similarity=0.269 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhhh
Q psy7514 300 ITMSFLLMLVFMTYNVALCIAVVAGAA 326 (347)
Q Consensus 300 ~~lsYlLMLivMTyN~~lflAVvlG~~ 326 (347)
+.=+.-||++-|.+ +.+|+++++.+.
T Consensus 7 l~~gl~lMvlGMg~-VfvFL~lLI~~i 32 (82)
T PRK02919 7 LGEGFTLMFLGMGF-VLAFLFLLIFAI 32 (82)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 34455788888988 788888887654
No 22
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=31.04 E-value=1.8e+02 Score=23.95 Aligned_cols=46 Identities=15% Similarity=0.137 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-------hhhHHHHHHHHhhhhhhhhcccccc
Q psy7514 291 IQTLLHVLQITMSFLLMLVFMT-------YNVALCIAVVAGAACGYFLFGWKKS 337 (347)
Q Consensus 291 ira~L~~vq~~lsYlLMLivMT-------yN~~lflAVvlG~~lG~fiFg~~~~ 337 (347)
....+-+++++++++++..+|. |-.+. ++.+....+|+++|+.+-+
T Consensus 38 ~~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~-l~~v~~~~~~~l~f~E~ls 90 (111)
T PRK15051 38 LWLGLALACLGLAMVLWLLVLQNVPVGIAYPMLS-LNFVWVTLAAVKLWHEPVS 90 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHH-HHHHHHHHHHHHHhCCCCC
Confidence 3455666788889998888875 44555 6778888999999988743
No 23
>PF06376 DUF1070: Protein of unknown function (DUF1070); InterPro: IPR009424 This entry represents the arabinogalactan peptide family found in plants [].
Probab=29.19 E-value=48 Score=22.19 Aligned_cols=13 Identities=31% Similarity=0.657 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHH
Q psy7514 299 QITMSFLLMLVFM 311 (347)
Q Consensus 299 q~~lsYlLMLivM 311 (347)
.-.++|+||+++-
T Consensus 15 Dqgiay~Lm~~Al 27 (34)
T PF06376_consen 15 DQGIAYMLMLVAL 27 (34)
T ss_pred hHHHHHHHHHHHH
Confidence 3467888887763
No 24
>PRK11431 multidrug efflux system protein; Provisional
Probab=28.61 E-value=1.8e+02 Score=23.97 Aligned_cols=45 Identities=29% Similarity=0.377 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHH-------hhhhHHHHHHHHhhhhhhhhcccccc
Q psy7514 293 TLLHVLQITMSFLLMLVFM-------TYNVALCIAVVAGAACGYFLFGWKKS 337 (347)
Q Consensus 293 a~L~~vq~~lsYlLMLivM-------TyN~~lflAVvlG~~lG~fiFg~~~~ 337 (347)
+++-.+-+.++|.++-.+| .|-+|--+.++.-..+|.++|+.+.+
T Consensus 32 ~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~ 83 (105)
T PRK11431 32 SIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESAS 83 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4455667778888887777 56667777777888899999998754
No 25
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=27.55 E-value=1.2e+02 Score=30.49 Aligned_cols=29 Identities=14% Similarity=-0.081 Sum_probs=20.7
Q ss_pred ccc-eeEEecCceecCchhHHHHHHHHHHH
Q psy7514 59 GYN-EVILFNQWKISTPSGLIASMVGIFFL 87 (347)
Q Consensus 59 ~~~-~~ilF~~W~i~s~~~~~~Sci~ifll 87 (347)
+.+ ..|.|..|+|.++...++.+++++++
T Consensus 24 ~~Gyv~i~~~~~~ie~s~~~~~~~~~~~~~ 53 (409)
T TIGR00540 24 HQGYVLIETANRIIEMSITGLAIFFIIALA 53 (409)
T ss_pred CCCeEEEEECCEEEEeeHHHHHHHHHHHHH
Confidence 344 56888999999998777765555443
No 26
>PRK13664 hypothetical protein; Provisional
Probab=27.29 E-value=1.2e+02 Score=22.67 Aligned_cols=31 Identities=16% Similarity=0.105 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7514 75 SGLIASMVGIFFLAALYEGVKYYREYLFWKT 105 (347)
Q Consensus 75 ~~~~~Sci~ifllav~yE~Lk~~r~~l~~~~ 105 (347)
..|...+|.+++++++..++|.+|+.-.+|.
T Consensus 5 adyWWilill~lvG~i~N~iK~l~RvD~Kkf 35 (62)
T PRK13664 5 AKYWWILVLVFLVGVLLNVIKDLKRVDHKKF 35 (62)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 3456677899999999999999987766554
No 27
>PF07125 DUF1378: Protein of unknown function (DUF1378); InterPro: IPR009808 This entry is represented by Bacteriophage 933W, Orf25. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of hypothetical bacterial and phage proteins of around 59 residues in length. Bacterial members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=25.76 E-value=1.1e+02 Score=22.64 Aligned_cols=27 Identities=22% Similarity=0.125 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy7514 80 SMVGIFFLAALYEGVKYYREYLFWKTY 106 (347)
Q Consensus 80 Sci~ifllav~yE~Lk~~r~~l~~~~~ 106 (347)
-|-++..|-.+--+-|..|.|+.||..
T Consensus 11 FctvVcaLYLvsGGyk~IRnY~r~Kid 37 (59)
T PF07125_consen 11 FCTVVCALYLVSGGYKVIRNYFRRKID 37 (59)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344444444444455555666655543
No 28
>PRK13664 hypothetical protein; Provisional
Probab=25.52 E-value=1.4e+02 Score=22.43 Aligned_cols=31 Identities=16% Similarity=0.105 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy7514 211 SGLIASMVGIFFLAALYEGVKYYREYLFWKT 241 (347)
Q Consensus 211 ~~y~~sci~iflLav~~E~Lk~~R~~l~~k~ 241 (347)
..|-..+|++++++++.-++|.+|+.-.+|+
T Consensus 5 adyWWilill~lvG~i~N~iK~l~RvD~Kkf 35 (62)
T PRK13664 5 AKYWWILVLVFLVGVLLNVIKDLKRVDHKKF 35 (62)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 4677888999999999999999986544443
No 29
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=25.34 E-value=3.8e+02 Score=24.37 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=16.1
Q ss_pred HhhhhHHHHHHHHhhhhhhhhc
Q psy7514 311 MTYNVALCIAVVAGAACGYFLF 332 (347)
Q Consensus 311 MTyN~~lflAVvlG~~lG~fiF 332 (347)
-|.-.-+|+=++-|++|||-+=
T Consensus 132 nTiiT~~CiyiLyGlFIGYSIs 153 (173)
T PF11085_consen 132 NTIITTLCIYILYGLFIGYSIS 153 (173)
T ss_pred hHHHHHHHHHHHHHHHhceeeh
Confidence 3444557888889999999664
No 30
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=24.78 E-value=1.6e+02 Score=29.51 Aligned_cols=28 Identities=14% Similarity=0.175 Sum_probs=21.1
Q ss_pred eeEEecCceecCchhHHHHHHHHHHHHH
Q psy7514 62 EVILFNQWKISTPSGLIASMVGIFFLAA 89 (347)
Q Consensus 62 ~~ilF~~W~i~s~~~~~~Sci~ifllav 89 (347)
..|-|..|+|.++...++..++++++++
T Consensus 28 v~i~~~~~~ie~sl~~~~~~~~~~~~~~ 55 (398)
T PRK10747 28 VLIQTDNYNIETSVTGLAIILILAMVVL 55 (398)
T ss_pred EEEEECCEEEEehHHHHHHHHHHHHHHH
Confidence 5577899999999887777666665553
No 31
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=24.29 E-value=1.2e+02 Score=30.27 Aligned_cols=24 Identities=17% Similarity=-0.060 Sum_probs=16.9
Q ss_pred EEecCceeCChhhHHHHHHHHHHH
Q psy7514 200 ILFNQWKISTPSGLIASMVGIFFL 223 (347)
Q Consensus 200 lLF~~W~i~S~~~y~~sci~iflL 223 (347)
|-|.+|+++++...++.+++++++
T Consensus 30 i~~~~~~ie~s~~~~~~~~~~~~~ 53 (409)
T TIGR00540 30 IETANRIIEMSITGLAIFFIIALA 53 (409)
T ss_pred EEECCEEEEeeHHHHHHHHHHHHH
Confidence 888999999986665555444433
No 32
>PRK02898 cobalt transport protein CbiN; Provisional
Probab=23.97 E-value=52 Score=27.29 Aligned_cols=27 Identities=33% Similarity=0.454 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhc
Q psy7514 290 FIQTLLHVLQITMSFLLMLVFMTYNVALCIAVVAGAACGYFLF 332 (347)
Q Consensus 290 lira~L~~vq~~lsYlLMLivMTyN~~lflAVvlG~~lG~fiF 332 (347)
=+.++|+.+|..|+ |.|+|..+||+-=
T Consensus 65 EiESLLFaLQAAiG----------------AgiIgY~lG~~~g 91 (100)
T PRK02898 65 EIESLLFALQAALG----------------AGIIGYILGYYKG 91 (100)
T ss_pred hHHHHHHHHHHHHh----------------hhhhheeeeehhh
Confidence 47899999999976 6678888888653
No 33
>PF03248 Rer1: Rer1 family; InterPro: IPR004932 RER1 family proteins are involved in involved in the retrieval of some endoplasmic reticulum membrane proteins from the early golgi compartment. The C terminus of yeast Rer1p interacts with a coatomer complex [].; GO: 0016021 integral to membrane
Probab=23.71 E-value=5.6e+02 Score=23.34 Aligned_cols=17 Identities=12% Similarity=0.073 Sum_probs=9.4
Q ss_pred hhhHHHHHHHHHHHHHH
Q psy7514 210 PSGLIASMVGIFFLAAL 226 (347)
Q Consensus 210 ~~~y~~sci~iflLav~ 226 (347)
.|...+.++++|++-+.
T Consensus 27 RW~~~~~L~~lf~~Rv~ 43 (176)
T PF03248_consen 27 RWIAFLVLLFLFLLRVY 43 (176)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45556666666555443
No 34
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=23.39 E-value=2.6e+02 Score=23.32 Aligned_cols=45 Identities=20% Similarity=0.342 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-------hhhhHHHHHHHHhhhhhhhhcccccc
Q psy7514 293 TLLHVLQITMSFLLMLVFM-------TYNVALCIAVVAGAACGYFLFGWKKS 337 (347)
Q Consensus 293 a~L~~vq~~lsYlLMLivM-------TyN~~lflAVvlG~~lG~fiFg~~~~ 337 (347)
+++..+-+.++|.++-.+| .|-+|--+.+++-..+|.++|+.+-+
T Consensus 38 ~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~ 89 (109)
T PRK10650 38 GILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLN 89 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 6666777888888888777 45555556666667889999987653
No 35
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=23.21 E-value=2.4e+02 Score=28.02 Aligned_cols=19 Identities=5% Similarity=0.324 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy7514 288 PHFIQTLLHVLQITMSFLL 306 (347)
Q Consensus 288 ~~lira~L~~vq~~lsYlL 306 (347)
.+++|+++.++-++.=|++
T Consensus 305 lrL~~~~l~~~~~~~l~~i 323 (340)
T PF12794_consen 305 LRLLRSILLLILLVGLYWI 323 (340)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4677777766555444443
No 36
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=22.90 E-value=98 Score=33.73 Aligned_cols=37 Identities=14% Similarity=0.286 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHH-----hhhhHHHHHHHHhhhhhhhhcccc
Q psy7514 298 LQITMSFLLMLVFM-----TYNVALCIAVVAGAACGYFLFGWK 335 (347)
Q Consensus 298 vq~~lsYlLMLivM-----TyN~~lflAVvlG~~lG~fiFg~~ 335 (347)
+..+++|++|+.+| +.|.++|..|++|...++ ++++.
T Consensus 74 la~~v~yl~~~~~~~~~~~~~~~gvfgGIi~G~i~a~-l~nkf 115 (648)
T PRK10255 74 LAGAVGYFVLTKAMVTINPEINMGVLAGIITGLVGGA-AYNRW 115 (648)
T ss_pred HHHHHHHHHHHHHHHHHhhhhchhhhhhhHHHHHHHH-HHHHh
Confidence 35567777777764 458899999999998875 44443
No 37
>PF06612 DUF1146: Protein of unknown function (DUF1146); InterPro: IPR009526 Members of this protein family are small, typically about 80 residues in length, and are highly hydrophobic. The gene is found so far only in a subset of the firmicutes in association with genes of the ATP synthase F1 complex or NADH-quinone oxidoreductase. This family includes YwzB from Bacillus subtilis.
Probab=22.51 E-value=69 Score=22.86 Aligned_cols=13 Identities=15% Similarity=0.337 Sum_probs=5.5
Q ss_pred HHHHHHhhhhhhh
Q psy7514 318 CIAVVAGAACGYF 330 (347)
Q Consensus 318 flAVvlG~~lG~f 330 (347)
++||.+|..++.|
T Consensus 34 llsIalGylvs~F 46 (48)
T PF06612_consen 34 LLSIALGYLVSSF 46 (48)
T ss_pred HHHHHHHHHHHhh
Confidence 3444444444433
No 38
>PF10086 DUF2324: Putative membrane peptidase family (DUF2324); InterPro: IPR011397 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins (with several transmembrane segments).
Probab=22.33 E-value=1.2e+02 Score=28.46 Aligned_cols=30 Identities=20% Similarity=0.329 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q psy7514 75 SGLIASMVGIFFLAALYEGVKYY-REYLFWK 104 (347)
Q Consensus 75 ~~~~~Sci~ifllav~yE~Lk~~-r~~l~~~ 104 (347)
.-++..+.+.+..+++-|.-|+. .+|+.||
T Consensus 59 ~~~l~~ly~~l~AGiFEE~gR~i~~k~l~kk 89 (223)
T PF10086_consen 59 NPILYALYGGLMAGIFEETGRYIGFKYLLKK 89 (223)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44566778888889999999988 7777654
No 39
>COG5547 Small integral membrane protein [Function unknown]
Probab=22.25 E-value=2.3e+02 Score=21.28 Aligned_cols=35 Identities=20% Similarity=0.474 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhh
Q psy7514 290 FIQTLLHVLQITMSFLLMLVFMTYNVALCIAVVAGAACGYFL 331 (347)
Q Consensus 290 lira~L~~vq~~lsYlLMLivMTyN~~lflAVvlG~~lG~fi 331 (347)
++-.++..+-++++|+=|+. +++-+++|..+|++.
T Consensus 15 lvglliAili~t~GfwKtil-------viil~~lGv~iGl~~ 49 (62)
T COG5547 15 LVGLLIAILILTFGFWKTIL-------VIILILLGVYIGLYK 49 (62)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 33344444455555555543 345566788888764
No 40
>COG3667 PcoB Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=22.03 E-value=1.1e+02 Score=29.88 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=10.6
Q ss_pred CCCCCCCCCCCCCCceeeE
Q psy7514 173 PCHDMDSHEGMDHMGMSMA 191 (347)
Q Consensus 173 ~~h~m~g~~gm~~~~M~M~ 191 (347)
+.||.+-+.+|++..+++.
T Consensus 66 ~~mDh~~m~~MdHa~~~~~ 84 (321)
T COG3667 66 PQMDHGAMPHMDHAPPPIP 84 (321)
T ss_pred cCCCCCCCCCcccCCCCCC
Confidence 4444455566766555554
No 41
>PF13980 UPF0370: Uncharacterised protein family (UPF0370)
Probab=22.03 E-value=1.2e+02 Score=22.81 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7514 81 MVGIFFLAALYEGVKYYREYLFWKT 105 (347)
Q Consensus 81 ci~ifllav~yE~Lk~~r~~l~~~~ 105 (347)
.|.|++++++..++|.+|+.-.+|.
T Consensus 10 iiLl~lvG~i~n~iK~L~RvD~K~f 34 (63)
T PF13980_consen 10 IILLILVGMIINGIKELRRVDHKKF 34 (63)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 3789999999999999977666553
No 42
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=21.96 E-value=1.1e+02 Score=25.88 Aligned_cols=21 Identities=10% Similarity=0.172 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy7514 213 LIASMVGIFFLAALYEGVKYY 233 (347)
Q Consensus 213 y~~sci~iflLav~~E~Lk~~ 233 (347)
.++.+|+|||++++...-|..
T Consensus 7 iii~~i~l~~~~~~~~~rRR~ 27 (130)
T PF12273_consen 7 IIIVAILLFLFLFYCHNRRRR 27 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333333333344333344433
No 43
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=21.65 E-value=1.3e+02 Score=25.94 Aligned_cols=33 Identities=12% Similarity=0.331 Sum_probs=20.9
Q ss_pred cCceecCchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy7514 67 NQWKISTPSGLIASMVGIFFLAALYEGVKYYRE 99 (347)
Q Consensus 67 ~~W~i~s~~~~~~Sci~ifllav~yE~Lk~~r~ 99 (347)
++|...-...+++.++++.++.+++...|.+|+
T Consensus 15 swwP~a~GWwll~~lll~~~~~~~~~~~r~~~~ 47 (146)
T PF14316_consen 15 SWWPLAPGWWLLLALLLLLLILLLWRLWRRWRR 47 (146)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456666666666666666666666666666643
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=21.55 E-value=1.5e+02 Score=29.67 Aligned_cols=25 Identities=16% Similarity=0.212 Sum_probs=17.3
Q ss_pred EEecCceeCChhhHHHHHHHHHHHH
Q psy7514 200 ILFNQWKISTPSGLIASMVGIFFLA 224 (347)
Q Consensus 200 lLF~~W~i~S~~~y~~sci~iflLa 224 (347)
|-|.+|+++++.-.++..+++++++
T Consensus 30 i~~~~~~ie~sl~~~~~~~~~~~~~ 54 (398)
T PRK10747 30 IQTDNYNIETSVTGLAIILILAMVV 54 (398)
T ss_pred EEECCEEEEehHHHHHHHHHHHHHH
Confidence 7889999999865555555554444
No 45
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.87 E-value=85 Score=26.56 Aligned_cols=22 Identities=18% Similarity=0.440 Sum_probs=0.0
Q ss_pred HHhhhhHHHHHHHHhhhhhhhh
Q psy7514 310 FMTYNVALCIAVVAGAACGYFL 331 (347)
Q Consensus 310 vMTyN~~lflAVvlG~~lG~fi 331 (347)
+|+--.-++-.|++|++||+|+
T Consensus 45 a~klssefIsGilVGa~iG~ll 66 (116)
T COG5336 45 AFKLSSEFISGILVGAGIGWLL 66 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
No 46
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=20.39 E-value=3.4e+02 Score=25.02 Aligned_cols=16 Identities=6% Similarity=-0.006 Sum_probs=6.8
Q ss_pred hHHHHHHHHHHHHHHH
Q psy7514 212 GLIASMVGIFFLAALY 227 (347)
Q Consensus 212 ~y~~sci~iflLav~~ 227 (347)
++++.+|.+++|-++.
T Consensus 55 ~l~w~~I~FliL~~lL 70 (204)
T PRK09174 55 QLLWLAITFGLFYLFM 70 (204)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4544444444333333
Done!