Query psy7514
Match_columns 347
No_of_seqs 263 out of 1103
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 20:19:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7514.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7514hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ls3_A High affinity copper up 98.6 2.1E-11 7.3E-16 77.3 0.0 27 289-315 2-28 (29)
2 2ls4_A High affinity copper up 98.0 7.9E-09 2.7E-13 63.7 0.0 25 313-337 1-25 (26)
3 2ls2_A High affinity copper up 97.5 2E-07 6.7E-12 57.6 0.0 25 72-96 2-26 (26)
4 2ls2_A High affinity copper up 96.9 4E-06 1.4E-10 51.6 0.0 25 208-232 2-26 (26)
5 3oka_C N-terminal His-affinity 63.1 2.8 9.7E-05 23.5 1.1 8 8-15 3-10 (21)
6 3udc_A Small-conductance mecha 41.7 2E+02 0.0069 26.1 11.3 42 288-329 65-108 (285)
7 4g1u_A Hemin transport system 40.0 6 0.00021 38.3 0.0 24 313-336 330-353 (357)
8 2vv5_A MSCS, small-conductance 33.5 2E+02 0.0067 26.2 9.3 41 290-330 68-110 (286)
9 2yjp_A Putative ABC transporte 28.4 12 0.00042 33.3 0.0 11 7-17 2-12 (291)
10 1ydx_A Type I restriction enzy 27.2 13 0.00045 35.1 0.0 11 7-17 2-12 (406)
11 3uau_A JLPA, surface-exposed l 26.3 14 0.00048 34.7 0.0 11 7-17 2-12 (379)
12 4g2c_A DYP2; DYE peroxidase, o 21.3 20 0.00068 36.2 0.0 11 7-17 2-12 (493)
13 2i68_A Protein EMRE; transmemb 20.6 1.2E+02 0.004 25.0 4.6 39 297-335 37-82 (137)
14 3dfz_A SIRC, precorrin-2 dehyd 20.5 21 0.00073 32.0 0.0 14 224-237 170-183 (223)
15 1t3o_A Carbon storage regulato 20.1 28 0.00094 27.5 0.6 14 53-66 21-35 (95)
No 1
>2ls3_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=98.61 E-value=2.1e-11 Score=77.26 Aligned_cols=27 Identities=56% Similarity=1.115 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy7514 289 HFIQTLLHVLQITMSFLLMLVFMTYNV 315 (347)
Q Consensus 289 ~lira~L~~vq~~lsYlLMLivMTyN~ 315 (347)
|++|+++|++|++++|+|||++||||+
T Consensus 2 h~~ra~l~~~q~~~~Y~LML~~MtyN~ 28 (29)
T 2ls3_A 2 HLLQTVLHIIQVVISYFLMLIFMTYNK 28 (29)
Confidence 789999999999999999999999996
No 2
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=97.97 E-value=7.9e-09 Score=63.66 Aligned_cols=25 Identities=72% Similarity=1.290 Sum_probs=23.8
Q ss_pred hhhHHHHHHHHhhhhhhhhcccccc
Q psy7514 313 YNVALCIAVVAGAACGYFLFGWKKS 337 (347)
Q Consensus 313 yN~~lflAVvlG~~lG~fiFg~~~~ 337 (347)
||+|+||||++|+++|||+|+++++
T Consensus 1 YNg~l~iavvlGa~~Gyf~F~~~~~ 25 (26)
T 2ls4_A 1 YNGYLCIAVAAGAGTGYFLFSWKKX 25 (26)
Confidence 8999999999999999999999875
No 3
>2ls2_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=97.50 E-value=2e-07 Score=57.56 Aligned_cols=25 Identities=36% Similarity=0.737 Sum_probs=23.2
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHH
Q psy7514 72 STPSGLIASMVGIFFLAALYEGVKY 96 (347)
Q Consensus 72 ~s~~~~~~Sci~ifllav~yE~Lk~ 96 (347)
+|.++|++|||+||+++++||+||.
T Consensus 2 ~s~~~~v~Sci~ifll~~~YE~Lk~ 26 (26)
T 2ls2_A 2 NTAGEMAGAFVAVFLLAMFYEGLKX 26 (26)
Confidence 5789999999999999999999984
No 4
>2ls2_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=96.93 E-value=4e-06 Score=51.65 Aligned_cols=25 Identities=36% Similarity=0.737 Sum_probs=23.0
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHH
Q psy7514 208 STPSGLIASMVGIFFLAALYEGVKY 232 (347)
Q Consensus 208 ~S~~~y~~sci~iflLav~~E~Lk~ 232 (347)
+|+++|++||+++|+++++||+||.
T Consensus 2 ~s~~~~v~Sci~ifll~~~YE~Lk~ 26 (26)
T 2ls2_A 2 NTAGEMAGAFVAVFLLAMFYEGLKX 26 (26)
Confidence 5789999999999999999999983
No 5
>3oka_C N-terminal His-affinity TAG; GT-B fold, alpha-mannosyltransferase, GDP-MAN binding, trans; HET: GDD; 2.20A {Escherichia coli}
Probab=63.12 E-value=2.8 Score=23.51 Aligned_cols=8 Identities=63% Similarity=1.202 Sum_probs=3.0
Q ss_pred CCcCCCCC
Q psy7514 8 HDMHSHHH 15 (347)
Q Consensus 8 ~~~~~~~h 15 (347)
|++|+++|
T Consensus 3 hhhhhhhh 10 (21)
T 3oka_C 3 HHHHHHHH 10 (26)
T ss_pred cccccccc
Confidence 33333333
No 6
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=41.67 E-value=2e+02 Score=26.08 Aligned_cols=42 Identities=12% Similarity=0.218 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH--Hhhhhhh
Q psy7514 288 PHFIQTLLHVLQITMSFLLMLVFMTYNVALCIAVV--AGAACGY 329 (347)
Q Consensus 288 ~~lira~L~~vq~~lsYlLMLivMTyN~~lflAVv--lG~~lG~ 329 (347)
..+++.++..+-++++.++.|-..-.|..-+++.+ +|+++|.
T Consensus 65 ~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~l~a~~g~~g~aig~ 108 (285)
T 3udc_A 65 TSLTKNAVRYIIYFLAGASILKLFNIDMTSLLAVAGIGSLAIGF 108 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666667766555444 5556664
No 7
>4g1u_A Hemin transport system permease protein HMUU; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=39.98 E-value=6 Score=38.29 Aligned_cols=24 Identities=13% Similarity=0.286 Sum_probs=15.8
Q ss_pred hhhHHHHHHHHhhhhhhhhccccc
Q psy7514 313 YNVALCIAVVAGAACGYFLFGWKK 336 (347)
Q Consensus 313 yN~~lflAVvlG~~lG~fiFg~~~ 336 (347)
--++++++++.|-.+=|++..+++
T Consensus 330 lPvGivtaliGaP~fl~Ll~r~~~ 353 (357)
T 4g1u_A 330 MPVGLLTSLLGGPYFLWLILRQRE 353 (357)
T ss_dssp CCHHHHHHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHHHHHHHHHHhccc
Confidence 467788888888888887775543
No 8
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=33.53 E-value=2e+02 Score=26.22 Aligned_cols=41 Identities=27% Similarity=0.328 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH--HHhhhhhhh
Q psy7514 290 FIQTLLHVLQITMSFLLMLVFMTYNVALCIAV--VAGAACGYF 330 (347)
Q Consensus 290 lira~L~~vq~~lsYlLMLivMTyN~~lflAV--vlG~~lG~f 330 (347)
+++.++..+-++++.++.|-..-.|..-+++. ++|+++|..
T Consensus 68 ~~~~i~~~~i~~i~~~~~l~~~gi~~~~l~a~~g~~g~aig~a 110 (286)
T 2vv5_A 68 FLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLVVGLA 110 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555555665444433 356666643
No 9
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=28.35 E-value=12 Score=33.30 Aligned_cols=11 Identities=55% Similarity=1.096 Sum_probs=0.0
Q ss_pred CCCcCCCCCCc
Q psy7514 7 DHDMHSHHHHQ 17 (347)
Q Consensus 7 ~~~~~~~~h~~ 17 (347)
.|+||+|||||
T Consensus 2 ~~~~~~~~~~~ 12 (291)
T 2yjp_A 2 GHHHHHHHHHH 12 (291)
T ss_dssp -----------
T ss_pred Ccccccccccc
Confidence 34444444433
No 10
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=27.15 E-value=13 Score=35.10 Aligned_cols=11 Identities=55% Similarity=1.096 Sum_probs=0.0
Q ss_pred CCCcCCCCCCc
Q psy7514 7 DHDMHSHHHHQ 17 (347)
Q Consensus 7 ~~~~~~~~h~~ 17 (347)
.|+||+|||||
T Consensus 2 ~~~~~~~~~~~ 12 (406)
T 1ydx_A 2 GHHHHHHHHHH 12 (406)
T ss_dssp -----------
T ss_pred Ccccccccccc
Confidence 34444444433
No 11
>3uau_A JLPA, surface-exposed lipoprotein; adhesin, bacterial cell surface, cell adhesion; 2.70A {Campylobacter jejuni subsp}
Probab=26.26 E-value=14 Score=34.69 Aligned_cols=11 Identities=55% Similarity=1.096 Sum_probs=0.0
Q ss_pred CCCcCCCCCCc
Q psy7514 7 DHDMHSHHHHQ 17 (347)
Q Consensus 7 ~~~~~~~~h~~ 17 (347)
.|+||+|||||
T Consensus 2 ~~~~~~~~~~~ 12 (379)
T 3uau_A 2 GHHHHHHHHHH 12 (379)
T ss_dssp -----------
T ss_pred Ccccccccccc
Confidence 34444444433
No 12
>4g2c_A DYP2; DYE peroxidase, oxidoreductase; HET: HEM; 2.25A {Amycolatopsis SP}
Probab=21.27 E-value=20 Score=36.19 Aligned_cols=11 Identities=55% Similarity=1.096 Sum_probs=0.0
Q ss_pred CCCcCCCCCCc
Q psy7514 7 DHDMHSHHHHQ 17 (347)
Q Consensus 7 ~~~~~~~~h~~ 17 (347)
.|+||+|||||
T Consensus 2 ~~~~~~~~~~~ 12 (493)
T 4g2c_A 2 GHHHHHHHHHH 12 (493)
T ss_dssp -----------
T ss_pred ccccccccccc
Confidence 34444444444
No 13
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=20.61 E-value=1.2e+02 Score=25.01 Aligned_cols=39 Identities=18% Similarity=0.309 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHH-------hhhhHHHHHHHHhhhhhhhhcccc
Q psy7514 297 VLQITMSFLLMLVFM-------TYNVALCIAVVAGAACGYFLFGWK 335 (347)
Q Consensus 297 ~vq~~lsYlLMLivM-------TyN~~lflAVvlG~~lG~fiFg~~ 335 (347)
++-++++|++...++ .|-.|..+..++...+|.++|+..
T Consensus 37 i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ 82 (137)
T 2i68_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQR 82 (137)
T ss_dssp HHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 334445555555544 344445556666666676666654
No 14
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=20.51 E-value=21 Score=32.01 Aligned_cols=14 Identities=7% Similarity=-0.066 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHH
Q psy7514 224 AALYEGVKYYREYL 237 (347)
Q Consensus 224 av~~E~Lk~~R~~l 237 (347)
+-+.+.+..+|+.+
T Consensus 170 ~~~~~~~~~~R~~v 183 (223)
T 3dfz_A 170 TQYTQFLYECRVLI 183 (223)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444455555544
No 15
>1t3o_A Carbon storage regulator; CSRA, CSRB, CSRC, mostly beta strands, RNA binding protein, beta sheet surface; NMR {Bacillus subtilis}
Probab=20.07 E-value=28 Score=27.48 Aligned_cols=14 Identities=29% Similarity=0.169 Sum_probs=6.0
Q ss_pred eeEEEcc-cceeEEe
Q psy7514 53 SMAFHWG-YNEVILF 66 (347)
Q Consensus 53 ~M~F~~~-~~~~ilF 66 (347)
.|+-=.- .++.|+.
T Consensus 21 ~MLVLtRK~GEsI~I 35 (95)
T 1t3o_A 21 HMLVLSRKINEAIQI 35 (95)
T ss_dssp EEEEEECTTCCCEEE
T ss_pred eeEEEEccCCCeEEE
Confidence 4543333 3455544
Done!