Query psy7514
Match_columns 347
No_of_seqs 263 out of 1103
Neff 6.0
Searched_HMMs 13730
Date Fri Aug 16 20:19:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7514.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7514hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2vv5a3 f.34.1.1 (A:27-112) Me 27.1 88 0.0064 21.3 8.4 42 288-329 40-83 (86)
2 d2axtl1 f.23.31.1 (L:1-37) Pho 16.2 63 0.0046 19.3 3.0 19 210-228 14-32 (37)
3 d2axtt1 f.23.34.1 (T:1-30) Pho 15.8 30 0.0022 19.5 1.4 10 218-227 14-23 (30)
4 d2r6gf1 e.70.1.1 (F:13-260) Ma 12.6 1.3E+02 0.0096 25.1 5.5 45 293-337 6-50 (248)
5 d2axth1 f.23.33.1 (H:2-65) Pho 10.8 47 0.0034 22.4 1.4 25 66-90 21-45 (64)
6 d1ppjw_ f.23.14.1 (W:) Subunit 9.8 75 0.0055 21.3 2.2 25 311-335 14-38 (62)
7 d2e74e1 f.23.24.1 (E:1-32) Pet 9.6 83 0.006 17.8 2.0 13 317-329 10-22 (32)
8 d1xmec1 f.23.9.1 (C:2-34) Bact 8.1 2E+02 0.014 16.3 4.1 25 78-102 7-31 (33)
9 d2e74g1 f.23.26.1 (G:9-35) Pet 7.2 1.4E+02 0.01 16.2 2.2 19 78-96 2-20 (27)
10 d3cx5i1 f.23.14.1 (I:4-58) Sub 7.0 62 0.0045 21.2 0.7 24 311-334 8-31 (55)
No 1
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=27.07 E-value=88 Score=21.25 Aligned_cols=42 Identities=26% Similarity=0.358 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH--Hhhhhhh
Q psy7514 288 PHFIQTLLHVLQITMSFLLMLVFMTYNVALCIAVV--AGAACGY 329 (347)
Q Consensus 288 ~~lira~L~~vq~~lsYlLMLivMTyN~~lflAVv--lG~~lG~ 329 (347)
.+++..+++.+-..++.++.|-.+-+|..-+++.. +|.++|.
T Consensus 40 ~~~i~~~~~~~i~~i~~~~~L~~~Gi~~t~l~a~~G~~gvaiGf 83 (86)
T d2vv5a3 40 ADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLVVGL 83 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 35566666666677777777888888887665554 5666664
No 2
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=16.20 E-value=63 Score=19.26 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=14.6
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q psy7514 210 PSGLIASMVGIFFLAALYE 228 (347)
Q Consensus 210 ~~~y~~sci~iflLav~~E 228 (347)
.....+.++.||+++++..
T Consensus 14 rtsLy~GlLlifvl~vLFs 32 (37)
T d2axtl1 14 RTSLYLGLLLILVLALLFS 32 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 4567778888999988764
No 3
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=15.82 E-value=30 Score=19.53 Aligned_cols=10 Identities=30% Similarity=1.035 Sum_probs=4.9
Q ss_pred HHHHHHHHHH
Q psy7514 218 VGIFFLAALY 227 (347)
Q Consensus 218 i~iflLav~~ 227 (347)
|++|++++++
T Consensus 14 i~lfffaiff 23 (30)
T d2axtt1 14 IALFFFAIFF 23 (30)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 3455555543
No 4
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=12.65 E-value=1.3e+02 Score=25.11 Aligned_cols=45 Identities=18% Similarity=0.468 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhcccccc
Q psy7514 293 TLLHVLQITMSFLLMLVFMTYNVALCIAVVAGAACGYFLFGWKKS 337 (347)
Q Consensus 293 a~L~~vq~~lsYlLMLivMTyN~~lflAVvlG~~lG~fiFg~~~~ 337 (347)
.+|-.+..+..|.+.++..--+.++.+.+++-.+++.++|..++.
T Consensus 6 ~ll~l~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~vy~s~r~ 50 (248)
T d2r6gf1 6 SVLGLLGLLVGYLVVLMYAQGEYLFAITTLILSSAGLYIFANRKA 50 (248)
T ss_dssp HHHHHHHHHHHHTHHHHHGGGCHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHheEEEEEccCc
Confidence 677778888899888887777776666666666777777766653
No 5
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=10.78 E-value=47 Score=22.39 Aligned_cols=25 Identities=16% Similarity=0.351 Sum_probs=19.2
Q ss_pred ecCceecCchhHHHHHHHHHHHHHH
Q psy7514 66 FNQWKISTPSGLIASMVGIFFLAAL 90 (347)
Q Consensus 66 F~~W~i~s~~~~~~Sci~ifllav~ 90 (347)
-.+|-++..-+.+..++++|++.++
T Consensus 21 aPGWGTTplMgv~m~Lf~vfl~iiL 45 (64)
T d2axth1 21 APGWGTTPLMAVFMGLFLVFLLIIL 45 (64)
T ss_dssp CSTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcCccHHHHHHHHHHHHHHHHHH
Confidence 4678878788888888888877654
No 6
>d1ppjw_ f.23.14.1 (W:) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.76 E-value=75 Score=21.29 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=18.4
Q ss_pred HhhhhHHHHHHHHhhhhhhhhcccc
Q psy7514 311 MTYNVALCIAVVAGAACGYFLFGWK 335 (347)
Q Consensus 311 MTyN~~lflAVvlG~~lG~fiFg~~ 335 (347)
+-=|.-+.++|++|+++++..|..-
T Consensus 14 frRnStf~~tI~~gAf~fE~~fD~~ 38 (62)
T d1ppjw_ 14 FRRTSTFALTIVVGALFFERAFDQG 38 (62)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3445667888899999998888543
No 7
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=9.59 E-value=83 Score=17.77 Aligned_cols=13 Identities=38% Similarity=0.542 Sum_probs=7.5
Q ss_pred HHHHHHHhhhhhh
Q psy7514 317 LCIAVVAGAACGY 329 (347)
Q Consensus 317 lflAVvlG~~lG~ 329 (347)
+|+|...|.++|-
T Consensus 10 vfialffgiavgi 22 (32)
T d2e74e1 10 VFIALFFGIAVGI 22 (32)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhh
Confidence 4555666666664
No 8
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=8.15 E-value=2e+02 Score=16.32 Aligned_cols=25 Identities=12% Similarity=0.146 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7514 78 IASMVGIFFLAALYEGVKYYREYLF 102 (347)
Q Consensus 78 ~~Sci~ifllav~yE~Lk~~r~~l~ 102 (347)
++..++|..|.++.-++..+--++.
T Consensus 7 al~vi~il~l~ilvfw~gv~avf~a 31 (33)
T d1xmec1 7 ALAVILVLTLTILVFWLGVYAVFFA 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455666777777777776655554
No 9
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=7.17 E-value=1.4e+02 Score=16.24 Aligned_cols=19 Identities=11% Similarity=0.111 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy7514 78 IASMVGIFFLAALYEGVKY 96 (347)
Q Consensus 78 ~~Sci~ifllav~yE~Lk~ 96 (347)
++.+|++-+-+.+|.+.+.
T Consensus 2 vlgli~~tl~glf~aayqq 20 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHHH
Confidence 3445555566666655443
No 10
>d3cx5i1 f.23.14.1 (I:4-58) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.02 E-value=62 Score=21.22 Aligned_cols=24 Identities=21% Similarity=0.149 Sum_probs=18.1
Q ss_pred HhhhhHHHHHHHHhhhhhhhhccc
Q psy7514 311 MTYNVALCIAVVAGAACGYFLFGW 334 (347)
Q Consensus 311 MTyN~~lflAVvlG~~lG~fiFg~ 334 (347)
+-=|.-+..+|++|+++++..|..
T Consensus 8 frRnSv~~~tI~~gAf~fe~~fD~ 31 (55)
T d3cx5i1 8 FKRNAVFVGTIFAGAFVFQTVFDT 31 (55)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHH
Confidence 334556788899999999988854
Done!