RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7514
(347 letters)
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization,
metal transport; NMR {Homo sapiens}
Length = 26
Score = 43.5 bits (102), Expect = 1e-06
Identities = 18/24 (75%), Positives = 18/24 (75%)
Query: 313 YNVALCIAVVAGAACGYFLFGWKK 336
YN LCIAV AGA GYFLF WKK
Sbjct: 1 YNGYLCIAVAAGAGTGYFLFSWKK 24
>2ls3_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization,
metal transport; NMR {Homo sapiens}
Length = 29
Score = 41.5 bits (97), Expect = 7e-06
Identities = 15/26 (57%), Positives = 23/26 (88%)
Query: 289 HFIQTLLHVLQITMSFLLMLVFMTYN 314
H +QT+LH++Q+ +S+ LML+FMTYN
Sbjct: 2 HLLQTVLHIIQVVISYFLMLIFMTYN 27
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 0.001
Identities = 32/268 (11%), Positives = 78/268 (29%), Gaps = 83/268 (30%)
Query: 70 KISTPSGLIASMVGIFFLAALYEGV---KYYREYLFWK-------TYNDL-------HYR 112
+ P S++ ++ +G+ ++ K + N L +
Sbjct: 324 TTN-P--RRLSIIA----ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 113 S---------IPAQ------QRISSVEENKDTAKVVPLGM---DHSSMDHDMHSHH---- 150
IP + + K+ + + S +
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436
Query: 151 --------HHQEALSLESSNSAAASGNPMAPCHDM--DSHEGMDHM-GMSMAFHWGYNEV 199
H+ + + S + + P D SH G H+ + +
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG-HHLKNIEHPERMTLFRM 495
Query: 200 ILFN-QW---KI---STPSGLIASMVGIFFLAALYEGVKYYREYLFWKTYNDLHYRSIPA 252
+ + ++ KI ST S + + +K+Y+ Y+ ND Y
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGS------ILNTLQQLKFYKPYI---CDNDPKY----- 541
Query: 253 QQRISSVEEN--KDTAKVV--PVCDVLQ 276
++ ++++ + K ++ D+L+
Sbjct: 542 ERLVNAILDFLPKIEENLICSKYTDLLR 569
Score = 28.3 bits (62), Expect = 5.0
Identities = 23/167 (13%), Positives = 57/167 (34%), Gaps = 40/167 (23%)
Query: 8 HDMHSHHHHQEALSLESSNSAAASGNPMAPCHDM--DSHEGMDHM-GMSMAFHWGYNEVI 64
+ + H+ + + S + + P D SH G H+ + ++
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG-HHLKNIEHPERMTLFRMV 496
Query: 65 LFN-QW---KI---STPSGLIASMVGIFFLAALYEGVKYYREYLFWKTYNDLHYRSIPAQ 117
+ ++ KI ST S + + +K+Y+ Y+ ND Y +
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGS------ILNTLQQLKFYKPYI---CDNDPKY-----E 542
Query: 118 QRISSVEENKDTAKVVPLGMDHSSMDHDMHSHHHH---QEALSLESS 161
+ ++++ + +P ++ ++ + + AL E
Sbjct: 543 RLVNAILDF------LP------KIEENLICSKYTDLLRIALMAEDE 577
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 0.003
Identities = 40/289 (13%), Positives = 80/289 (27%), Gaps = 99/289 (34%)
Query: 59 GYNEVILFNQWKISTPSGLIASMVGIFFLAA------LYEGVKYYREYLFW------KTY 106
G+ L + + +G +V +A + V+ LF+ + Y
Sbjct: 257 GFTPGELRSY--LKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAY 314
Query: 107 NDLHYRSIPAQQRISSVEENKDTAKVVPL----GMDHSSMDHDM-----HSHHHHQEALS 157
+ S+P S+E N+ P+ + + + H Q +S
Sbjct: 315 PNT---SLPPSILEDSLENNEGVPS--PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS 369
Query: 158 LESSNSAAA---SGNPM-------------APCHDMDSHEGMDHMGMSMAFHWGYNEVIL 201
L N A SG P AP +D I
Sbjct: 370 L--VNGAKNLVVSGPPQSLYGLNLTLRKAKAP-SGLDQSR------------------IP 408
Query: 202 FNQWK---------ISTP--SGLIASMVGIFFLAALYEGVKYYREYLFWKTYNDLHYRSI 250
F++ K +++P S L+ + + V + + + I
Sbjct: 409 FSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDI-----------QI 457
Query: 251 PAQQRISSVEENKD----TAKVVP-VCDVLQKQP---PSMLMLSMPHFI 291
P + + D + + + D + + P + H +
Sbjct: 458 P----VYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHIL 502
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap,
CPX-pathway, envelope stress, transduction; HET: MSE;
1.45A {Escherichia coli str} PDB: 3qzc_A
Length = 145
Score = 33.0 bits (75), Expect = 0.061
Identities = 12/40 (30%), Positives = 16/40 (40%)
Query: 11 HSHHHHQEALSLESSNSAAASGNPMAPCHDMDSHEGMDHM 50
H HHHH L S + SG+ P ++ HM
Sbjct: 1 HHHHHHSSGLVPRGSAAEVGSGDNWHPGEELTQRSTQSHM 40
Score = 33.0 bits (75), Expect = 0.061
Identities = 12/40 (30%), Positives = 16/40 (40%)
Query: 147 HSHHHHQEALSLESSNSAAASGNPMAPCHDMDSHEGMDHM 186
H HHHH L S + SG+ P ++ HM
Sbjct: 1 HHHHHHSSGLVPRGSAAEVGSGDNWHPGEELTQRSTQSHM 40
>2f73_A L-FABP, fatty acid-binding protein, liver; structural genomics,
structural genomics consortium, SGC, lipid binding
protein; 2.50A {Homo sapiens} SCOP: b.60.1.2
Length = 149
Score = 29.6 bits (66), Expect = 0.91
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 9/52 (17%)
Query: 10 MHSHHHHQEALSLESSNSAAASGNPMAPC--HDMDSHEGMD----HMGMSMA 55
MH HHHH + L + N M+ + + S E + +G+
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQ---SMSFSGKYQLQSQENFEAFMKAIGLPEE 49
Score = 29.6 bits (66), Expect = 0.91
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 9/52 (17%)
Query: 146 MHSHHHHQEALSLESSNSAAASGNPMAPC--HDMDSHEGMD----HMGMSMA 191
MH HHHH + L + N M+ + + S E + +G+
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQ---SMSFSGKYQLQSQENFEAFMKAIGLPEE 49
>2es4_D Lipase chaperone; protein-protein complex, steric chaperone,
triacylglycerol hydrolase, all alpha helix protein, A/B
hydrolase fold; 1.85A {Burkholderia glumae} SCOP:
a.137.15.1
Length = 332
Score = 29.8 bits (66), Expect = 1.3
Identities = 10/30 (33%), Positives = 10/30 (33%)
Query: 8 HDMHSHHHHQEALSLESSNSAAASGNPMAP 37
H H HHHH AA S P
Sbjct: 3 HHHHHHHHHSSGHIEGRHMPAAPSPAPAGA 32
Score = 29.8 bits (66), Expect = 1.3
Identities = 10/30 (33%), Positives = 10/30 (33%)
Query: 144 HDMHSHHHHQEALSLESSNSAAASGNPMAP 173
H H HHHH AA S P
Sbjct: 3 HHHHHHHHHSSGHIEGRHMPAAPSPAPAGA 32
>2ls2_A High affinity copper uptake protein 1; HCTR1 TMDS,
oligomerization, metal transport; NMR {Homo sapiens}
Length = 26
Score = 26.1 bits (57), Expect = 1.7
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 72 STPSGLIASMVGIFFLAALYEGVK 95
+T + + V +F LA YEG+K
Sbjct: 2 NTAGEMAGAFVAVFLLAMFYEGLK 25
Score = 26.1 bits (57), Expect = 1.7
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 208 STPSGLIASMVGIFFLAALYEGVK 231
+T + + V +F LA YEG+K
Sbjct: 2 NTAGEMAGAFVAVFLLAMFYEGLK 25
>1sfs_A Hypothetical protein; structural genomics, unknown function,
possible bacterial lysozyme, PSI, protein structure
initiative; 1.07A {Geobacillus stearothermophilus}
SCOP: c.1.8.8
Length = 240
Score = 28.9 bits (64), Expect = 2.2
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 10 MHSHHHHQEALSLESSNSAAASGNPMAPCHDMDS 43
MH HHHH + L + N S +DS
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSNAMARGIWGVDS 34
Score = 28.9 bits (64), Expect = 2.2
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 146 MHSHHHHQEALSLESSNSAAASGNPMAPCHDMDS 179
MH HHHH + L + N S +DS
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSNAMARGIWGVDS 34
>4ef4_A Transmembrane protein 173; sting/MITA/ERIS/MPYS/TMEM173, innate
immune system, type I interferon, dimerization,
C-DI-GMP; HET: C2E; 2.15A {Homo sapiens} PDB: 4ef5_A
Length = 265
Score = 28.1 bits (62), Expect = 4.1
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 10 MHSHHHHQEALSLESSNSAAASGNPMAPCH--DMDSHEGMDH-MGMSMAFHWGYNEVIL 65
MH HHHH + L + + N +AP + + G++ +++ GY +IL
Sbjct: 1 MHHHHHHSSGVDL-GTENLYFQSNALAPAEISAVCEKGNFNVAHGLAWSYYIGYLRLIL 58
Score = 28.1 bits (62), Expect = 4.1
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 146 MHSHHHHQEALSLESSNSAAASGNPMAPCH--DMDSHEGMDH-MGMSMAFHWGYNEVIL 201
MH HHHH + L + + N +AP + + G++ +++ GY +IL
Sbjct: 1 MHHHHHHSSGVDL-GTENLYFQSNALAPAEISAVCEKGNFNVAHGLAWSYYIGYLRLIL 58
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural
genomics, structural genomics consortium, SGC,
metal-binding; 1.75A {Homo sapiens}
Length = 118
Score = 27.0 bits (60), Expect = 4.1
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 10 MHSHHHHQEALSLESSNSAAASGNP 34
MH HHHH + L + N S +
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMHE 25
Score = 27.0 bits (60), Expect = 4.1
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 146 MHSHHHHQEALSLESSNSAAASGNP 170
MH HHHH + L + N S +
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMHE 25
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD
binding, isomerase; HET: NAD; 2.55A {Helicobacter
pylori}
Length = 362
Score = 28.0 bits (63), Expect = 4.5
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 14/65 (21%)
Query: 90 LYEGVKYYREYLFWKTYNDLHYRSIPAQQRISSVEENKDTAKVVP--LGMDHSSMDHDMH 147
L G+K +YL +I QR +K K +P LG+D + H H
Sbjct: 310 LESGIK---DYLPH-------IHAIFKGQRAKGELNSKLEGKPIPNLLGLDSTRTGH--H 357
Query: 148 SHHHH 152
HHHH
Sbjct: 358 HHHHH 362
>1uoz_A Putative cellulase; hydrolase, glycoside hydrolase, family 6;
HET: GLC SSG; 1.10A {Mycobacterium tuberculosis} SCOP:
c.6.1.1 PDB: 1up3_A* 1up0_A* 1up2_A*
Length = 315
Score = 27.7 bits (61), Expect = 5.2
Identities = 10/31 (32%), Positives = 12/31 (38%), Gaps = 4/31 (12%)
Query: 6 MDHDMHSHHHHQEALSLESSNSAAASGNPMA 36
M H H HHHH + NP+A
Sbjct: 1 MGHHHHHHHHHHSS----GHIEGRHMANPLA 27
Score = 27.7 bits (61), Expect = 5.2
Identities = 10/31 (32%), Positives = 12/31 (38%), Gaps = 4/31 (12%)
Query: 142 MDHDMHSHHHHQEALSLESSNSAAASGNPMA 172
M H H HHHH + NP+A
Sbjct: 1 MGHHHHHHHHHHSS----GHIEGRHMANPLA 27
>2yy8_A ATRM56, UPF0106 protein PH0461; DEEP trefoil knot, structural
genomics, NPPSFA; HET: SAM MTA; 2.48A {Pyrococcus
horikoshii}
Length = 201
Score = 27.2 bits (60), Expect = 6.2
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 10/69 (14%)
Query: 86 FLAALYEGVKYYREYLFWKTYNDLHYRSIPAQQ--RISSVEENKDTAKVVPLGMDHSSMD 143
L L EG +E+ + +P + ++ V+ + K G +
Sbjct: 141 LLDRLLEGKGLKKEF------KGAKIKIVPQARGKKVVEVQGYAEQDKAE--GKATPGKN 192
Query: 144 HDMHSHHHH 152
+ H HHHH
Sbjct: 193 WENHHHHHH 201
>2nn5_A Hypothetical protein EF_2215; structural genomics, APC29336,
PSI-2, structure initiative; HET: MSE; 1.45A
{Enterococcus faecalis} SCOP: d.129.3.5
Length = 184
Score = 27.1 bits (59), Expect = 6.4
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 10 MHSHHHHQEALSLESSNSAAASGNPMAPCHDMDSHEGMDHMGMSMA 55
MH HHHH + L + N S N M +++ +++
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQS-NAMKDTFRLENQTIYFGTERAIS 45
Score = 27.1 bits (59), Expect = 6.4
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 146 MHSHHHHQEALSLESSNSAAASGNPMAPCHDMDSHEGMDHMGMSMA 191
MH HHHH + L + N S N M +++ +++
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQS-NAMKDTFRLENQTIYFGTERAIS 45
>4a4y_A Protein MXIG; protein binding, FHA domain; 1.57A {Shigella
flexneri} PDB: 2xxs_A
Length = 146
Score = 27.0 bits (59), Expect = 7.0
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 11 HSHHHHQEALSLESSNSAAASGNPMAP 37
H HHHH L S+ + A + +AP
Sbjct: 5 HHHHHHSSGLVPRGSHMSEAKNSNLAP 31
Score = 27.0 bits (59), Expect = 7.0
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 147 HSHHHHQEALSLESSNSAAASGNPMAP 173
H HHHH L S+ + A + +AP
Sbjct: 5 HHHHHHSSGLVPRGSHMSEAKNSNLAP 31
>3hht_A NitrIle hydratase alpha subunit; alpha and beta proteins (A+B),
lyase; 1.16A {Geobacillus pallidus} PDB: 2dpp_A 1v29_A
Length = 216
Score = 27.3 bits (60), Expect = 7.1
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 1 MDHSSMDHDMHSHHHHQEALS 21
+ + + D HHH S
Sbjct: 3 IGQKNTNIDPRFPHHHPRPQS 23
Score = 27.3 bits (60), Expect = 7.1
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 137 MDHSSMDHDMHSHHHHQEALS 157
+ + + D HHH S
Sbjct: 3 IGQKNTNIDPRFPHHHPRPQS 23
>4g8t_A Glucarate dehydratase; enolase, enzyme function INI EFI,
structural genomics, lyase; 1.70A {Actinobacillus
succinogenes} PDB: 1ec7_A 1ec8_A* 1ec9_A* 1ecq_A*
1jdf_A* 3pwi_A* 1jct_A* 3pwg_A* 1bqg_A
Length = 464
Score = 27.5 bits (61), Expect = 7.9
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 10 MHSHHHHQEALSLESSNSAAASGNPM 35
MH HHHH + L + N S +
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMSTP 26
Score = 27.5 bits (61), Expect = 7.9
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 146 MHSHHHHQEALSLESSNSAAASGNPM 171
MH HHHH + L + N S +
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMSTP 26
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 27.5 bits (61), Expect = 8.3
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 83 GIFFLA----ALYEGVKYYREYLFWKTYNDLHYRSIPA--QQRISSVEENKDTAKVVPLG 136
GI + AL GV Y T D RS+PA + +++ E+ + K
Sbjct: 1184 GIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPAPGKGILTTAREHHSSVKYASPN 1243
Query: 137 MD 138
++
Sbjct: 1244 LN 1245
Score = 27.1 bits (60), Expect = 9.7
Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 219 GIFFLA----ALYEGVKYYREYLFWKTYNDLHYRSIPA 252
GI + AL GV Y T D RS+PA
Sbjct: 1184 GIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPA 1221
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase;
transferase; 3.10A {Arabidospis thaliana}
Length = 979
Score = 27.7 bits (62), Expect = 8.3
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 11 HSHHHHQEALSLESSNSAAASGNPMAPCHDMDSHEGMDHMGM 52
H HHHH L S+ A + A M+ ++ +
Sbjct: 5 HHHHHHSSGLVPRGSHMARMAPQEQAVSQVMEKQSNNNNSDV 46
Score = 27.7 bits (62), Expect = 8.3
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 147 HSHHHHQEALSLESSNSAAASGNPMAPCHDMDSHEGMDHMGM 188
H HHHH L S+ A + A M+ ++ +
Sbjct: 5 HHHHHHSSGLVPRGSHMARMAPQEQAVSQVMEKQSNNNNSDV 46
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.132 0.419
Gapped
Lambda K H
0.267 0.0639 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,558,619
Number of extensions: 331001
Number of successful extensions: 2446
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2423
Number of HSP's successfully gapped: 68
Length of query: 347
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 253
Effective length of database: 4,077,219
Effective search space: 1031536407
Effective search space used: 1031536407
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.3 bits)